RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9049
         (64 letters)



>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
          5664]}
          Length = 475

 Score = 45.2 bits (106), Expect = 4e-08
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 5  LDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLP 41
          L  EK  ++   ++P+AV    + L V++ +    + 
Sbjct: 49 LTNEKRDILVKHLIPQAVQLHTERLKVQQVQGKWKVT 85



 Score = 37.1 bits (85), Expect = 3e-05
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 32 RKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR 64
          R      ++P+AV    + L V++ +   ++  
Sbjct: 54 RDILVKHLIPQAVQLHTERLKVQQVQGKWKVTD 86


>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 218

 Score = 23.7 bits (50), Expect = 2.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 4   RLDAEKFQLINNTVLPEAVHFWEQAL 29
           +L  +K  LI +  LP A HF+   +
Sbjct: 170 KLKTQKGILITHRTLPGANHFFNGKV 195


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 22.8 bits (49), Expect = 3.8
 Identities = 5/15 (33%), Positives = 6/15 (40%)

Query: 47  WEQALMVRKTEKVIR 61
              AL  R  + V R
Sbjct: 240 AAVALRSRNVDAVAR 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 230,122
Number of extensions: 7640
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 4
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.6 bits)