BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9050
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MGYLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLS 54
+ ++++T C C + + W+GY NS LNP++Y FN +FR+AF LS
Sbjct: 419 LTHVLNTHC-QTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS 471
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 15 CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
C E++ W+GY NS LNPL+Y N +F++ FK L
Sbjct: 403 CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 16 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
P+++ W+GY NS +NP++Y + DFR+AFK L+F
Sbjct: 263 PDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLAF 301
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 16 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
P+++ W+GY NS +NP++Y + DFR+AFK L+F
Sbjct: 261 PDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLAF 299
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 4 LISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
LI+T C P C P + TI +W+ Y NS +NP YA N F++ FK+ L
Sbjct: 409 LINTFCAP-C-IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 7 TLCGPPCD-CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
T P C P +++ + + + NSV+NP +YAY R+FR+ F+ +
Sbjct: 418 TFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 465
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 7 TLCGPPCD-CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
T P C P +++ + + + NSV+NP +YAY R+FR+ F+ +
Sbjct: 377 TFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 424
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 11 PPCD-CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
P C P +++ + + + NSV+NP +YAY R+FR+ F+ +
Sbjct: 260 PDCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 11 PPCD-CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
P C P +++ + + + NSV+NP +YAY R+FR+ F+ +
Sbjct: 260 PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 11 PPCD-CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
P C P +++ + + + NSV+NP +YAY R+FR+ F+ +
Sbjct: 260 PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 26 IGYFNSVLNPLMYAYFNRDFREAFK 50
+GY NS LNP++YA+ + +F+ F+
Sbjct: 381 LGYVNSCLNPILYAFLDENFKACFR 405
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+ +L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 456 VYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 489
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+ +L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 443 VYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 476
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+ +L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 442 VYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 475
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+ +L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 443 VYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 476
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+ +L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 411 VYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 444
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 3 YLISTLCGPPCDC--PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
Y I L CD P+ + +W+ Y NS +NP+ YA N+ FR FK L
Sbjct: 390 YNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLL 442
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 26 IGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58
+GY NS LNP++YA+ + +F+ F++ F FP
Sbjct: 440 LGYTNSSLNPILYAFLDENFKRCFRD---FCFP 469
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 26 IGYFNSVLNPLMYAYFNRDFREAFKN 51
+GY NS LNP++YA+ + +F+ F+
Sbjct: 425 LGYANSSLNPVLYAFLDENFKRCFRQ 450
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 22 ILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 311 LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 341
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 22 ILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 254 LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 284
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 16 PEYIVTILFW-----IGYFNSVLNPLMYAYFNRDFREAFKN 51
PE + W +GY NS LNP++YA+ + +F+ F+
Sbjct: 412 PETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 22 ILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 310 LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 340
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 22 ILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 287 LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 317
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 26 IGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
+G+ +S LNP++YA+ ++FR F L+
Sbjct: 265 LGFLHSCLNPIIYAFIGQNFRHGFLKILAM 294
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 26 IGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58
+ Y +S +NP++Y + +FR+ F +TL+ + P
Sbjct: 458 LAYASSAINPILYNLVSANFRQVFLSTLACLCP 490
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 29 FNSVLNPLMYAYFNRDFREAFKN 51
NS +NP++YA ++D R AF++
Sbjct: 12 LNSTVNPIIYALRSKDLRHAFRS 34
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 30 NSVLNPLMYAYFNRDFREAFKNTLSFVFPWCFSC 63
+++ NP++Y+ + FREA T FPW +C
Sbjct: 306 SAIHNPMIYSVSHPKFREAISQT----FPWVLTC 335
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 30 NSVLNPLMYAYFNRDFREAFKNTLSFVFPWCFSC 63
+++ NP++Y+ + FREA T FPW +C
Sbjct: 307 SAIHNPMIYSVSHPKFREAISQT----FPWVLTC 336
>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
pdb|2E4G|B Chain B, Rebh With Bound L-Trp
pdb|2OAL|A Chain A, Rebh With Bound Fad
pdb|2OAL|B Chain B, Rebh With Bound Fad
pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The Apo Form
pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The Apo Form
pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
Complex
pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
Complex
Length = 550
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 33 LNPLMYAYFNRDFREAFKNTLSFV 56
LNP++ A FNR+ F +T F+
Sbjct: 400 LNPVLTARFNREIETMFDDTRDFI 423
>pdb|2EWL|A Chain A, Solution Structure Of The C-Terminal Domain (Monomer) Of
The Hpv45 Oncoprotein E7
pdb|2F8B|A Chain A, Nmr Structure Of The C-Terminal Domain (Dimer) Of Hpv45
Oncoprotein E7
pdb|2F8B|B Chain B, Nmr Structure Of The C-Terminal Domain (Dimer) Of Hpv45
Oncoprotein E7
Length = 56
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 43 RDFREAFKNTLSFVFPWCFS 62
R ++ F +TLSFV PWC +
Sbjct: 35 RTLQQLFLSTLSFVCPWCAT 54
>pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
pdb|1Q7L|C Chain C, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
Length = 198
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 15 CPEYIVTILFWIG--------YFNSVLN--PLMYAYFNRDFREAFKNTLSFVF 57
P Y+VT+L W G NS + P+ +++ D EAFK++ +++
Sbjct: 55 APGYVVTVLTWPGTNPTLSSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIY 107
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 20 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56
++I + +F+ LNP++YA+ F+ + ++ L+ V
Sbjct: 458 ISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSV 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.333 0.147 0.532
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,301,944
Number of Sequences: 62578
Number of extensions: 74749
Number of successful extensions: 239
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 36
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 45 (21.9 bits)