Query psy9050
Match_columns 73
No_of_seqs 162 out of 1136
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 17:41:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4220|consensus 99.3 1.7E-12 3.8E-17 83.7 2.7 57 1-59 435-491 (503)
2 PHA03234 DNA packaging protein 99.1 1.8E-10 3.9E-15 72.9 5.5 39 18-56 279-317 (338)
3 PHA02834 chemokine receptor-li 98.8 5E-09 1.1E-13 65.8 4.5 36 20-55 274-309 (323)
4 KOG4219|consensus 98.8 9E-09 1.9E-13 66.5 3.9 37 20-56 300-336 (423)
5 PHA03235 DNA packaging protein 98.8 2.1E-08 4.5E-13 65.1 5.5 38 18-55 286-323 (409)
6 PHA02638 CC chemokine receptor 98.8 2.4E-08 5.2E-13 64.9 5.7 39 19-57 361-399 (417)
7 PHA03087 G protein-coupled che 98.7 6.3E-08 1.4E-12 60.7 5.3 39 19-57 287-325 (335)
8 KOG2087|consensus 98.0 3.1E-06 6.6E-11 54.3 1.9 30 27-56 278-307 (363)
9 PF10324 7TM_GPCR_Srw: Serpent 97.5 0.00025 5.5E-09 44.3 4.9 39 18-56 280-318 (318)
10 PF00001 7tm_1: 7 transmembran 96.7 0.0025 5.4E-08 37.4 3.3 24 15-38 234-257 (257)
11 PF10320 7TM_GPCR_Srsx: Serpen 95.7 0.0087 1.9E-07 36.8 2.2 35 19-53 223-257 (257)
12 PF10321 7TM_GPCR_Srt: Serpent 95.1 0.019 4.1E-07 36.6 2.2 42 15-56 267-308 (313)
13 PF10323 7TM_GPCR_Srv: Serpent 90.6 0.44 9.4E-06 29.8 3.4 34 22-55 250-283 (283)
14 KOG4564|consensus 84.2 2.4 5.2E-05 28.9 4.1 35 20-54 384-418 (473)
15 PF05296 TAS2R: Mammalian tast 83.6 4.1 8.8E-05 25.8 4.8 37 19-55 265-301 (303)
16 PF10317 7TM_GPCR_Srd: Serpent 68.8 5.6 0.00012 24.9 2.4 32 20-51 261-292 (292)
17 PF10328 7TM_GPCR_Srx: Serpent 66.6 4.8 0.00011 24.8 1.8 25 29-53 249-273 (274)
18 PF10318 7TM_GPCR_Srh: Serpent 60.1 18 0.00039 22.5 3.5 38 18-55 265-302 (302)
19 KOG4193|consensus 57.5 54 0.0012 23.4 5.6 32 25-56 548-582 (610)
20 PF10326 7TM_GPCR_Str: Serpent 38.9 8.3 0.00018 24.1 -0.4 28 23-50 280-307 (307)
21 PF11970 Git3_C: G protein-cou 35.8 21 0.00046 18.2 0.9 29 17-45 46-74 (76)
22 PF02295 z-alpha: Adenosine de 35.3 15 0.00032 18.2 0.3 13 31-43 35-47 (66)
23 PF04628 Sedlin_N: Sedlin, N-t 33.8 35 0.00077 18.9 1.7 27 27-53 101-130 (132)
24 PF10842 DUF2642: Protein of u 22.1 41 0.00089 16.8 0.5 15 29-43 4-18 (66)
25 PF07746 LigA: Aromatic-ring-o 21.9 1.3E+02 0.0029 15.7 2.4 19 33-51 1-19 (88)
26 PF02101 Ocular_alb: Ocular al 21.0 1.7E+02 0.0037 20.0 3.2 21 31-51 206-226 (405)
No 1
>KOG4220|consensus
Probab=99.29 E-value=1.7e-12 Score=83.74 Aligned_cols=57 Identities=39% Similarity=0.734 Sum_probs=50.9
Q ss_pred CeeeeccccCCCCCCcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccCc
Q psy9050 1 MGYLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPW 59 (73)
Q Consensus 1 v~~~~~~~~~~~c~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~ 59 (73)
|+.++..|| ++| +|.+++.+..||.|+||.+||++|++-|+.||+.+++++.|+...
T Consensus 435 ImVlv~tFC-~~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~ 491 (503)
T KOG4220|consen 435 IMVLVNTFC-KNC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKK 491 (503)
T ss_pred eeeehHhhc-ccc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecc
Confidence 456677899 577 699999999999999999999999999999999999999887653
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.11 E-value=1.8e-10 Score=72.94 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
..+.++.+++++|||+||+||++.+++||+++++.++..
T Consensus 279 ~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 279 ILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDF 317 (338)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 446788899999999999999999999999999877543
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=98.84 E-value=5e-09 Score=65.77 Aligned_cols=36 Identities=28% Similarity=0.692 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhc
Q psy9050 20 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55 (73)
Q Consensus 20 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 55 (73)
..++.+++++|||+||+||++.+++||+++++++++
T Consensus 274 ~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~ 309 (323)
T PHA02834 274 IDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCR 309 (323)
T ss_pred HHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHh
Confidence 457788999999999999999999999999998854
No 4
>KOG4219|consensus
Probab=98.77 E-value=9e-09 Score=66.45 Aligned_cols=37 Identities=22% Similarity=0.786 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 20 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 20 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
+....||+..|+|+||+||++.|++||.++++.++++
T Consensus 300 yl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 300 YLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC 336 (423)
T ss_pred HHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence 5567799999999999999999999999999999875
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.76 E-value=2.1e-08 Score=65.11 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhc
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 55 (73)
.+..++.+++++|||+||+||++.+++||+++++.++.
T Consensus 286 ~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 286 AVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 45567888999999999999999999999999987754
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.76 E-value=2.4e-08 Score=64.92 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 19 ~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
...++..++++|||+||++|++.+++||+++++.+++..
T Consensus 361 ~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 361 AMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999999886443
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.66 E-value=6.3e-08 Score=60.66 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 19 ~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
...++.+++.+|+++||+||++++++||+++++.++...
T Consensus 287 ~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~ 325 (335)
T PHA03087 287 ALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMF 325 (335)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHh
Confidence 345777889999999999999999999999999886443
No 8
>KOG2087|consensus
Probab=98.01 E-value=3.1e-06 Score=54.27 Aligned_cols=30 Identities=43% Similarity=0.594 Sum_probs=25.9
Q ss_pred HHHhhhhhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 27 GYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 27 ~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
--+|||+||++|++.++.||+.++.+....
T Consensus 278 lPlns~~NP~LYa~fT~~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 278 LPLNSCLNPFLYAFFTPVFKEDLFLLLSKV 307 (363)
T ss_pred EEcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence 347999999999999999999999877543
No 9
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.52 E-value=0.00025 Score=44.32 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
....+...+..+|+..|++||.+++.+||++++++++++
T Consensus 280 ~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 280 QLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 445677889999999999999999999999999999753
No 10
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=96.69 E-value=0.0025 Score=37.39 Aligned_cols=24 Identities=29% Similarity=0.768 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHH
Q psy9050 15 CPEYIVTILFWIGYFNSVLNPLMY 38 (73)
Q Consensus 15 ~~~~~~~~~~~l~~~ns~~NPiiY 38 (73)
.......++.+++++||++||++|
T Consensus 234 ~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 234 ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 467778899999999999999998
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.71 E-value=0.0087 Score=36.82 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHh
Q psy9050 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53 (73)
Q Consensus 19 ~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~ 53 (73)
+.....+++.++.+.|-++|.++++|||+++++++
T Consensus 223 i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 223 IQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 44556678899999999999999999999999863
No 12
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.06 E-value=0.019 Score=36.62 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 15 CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 15 ~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
.+.++..++...--+++..+|+||-..|+..|++++++++.+
T Consensus 267 ~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k 308 (313)
T PF10321_consen 267 PPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPK 308 (313)
T ss_pred ccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHccc
Confidence 356667777777788999999999999999999999998643
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=90.64 E-value=0.44 Score=29.82 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhc
Q psy9050 22 ILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55 (73)
Q Consensus 22 ~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 55 (73)
+.-.+..+.|.+||+.--+.|++.|+++++.++|
T Consensus 250 ~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 250 FYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 3344566778999999999999999999998865
No 14
>KOG4564|consensus
Probab=84.18 E-value=2.4 Score=28.89 Aligned_cols=35 Identities=14% Similarity=0.507 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhh
Q psy9050 20 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLS 54 (73)
Q Consensus 20 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 54 (73)
..+...|..+.-.+=-++|+|.|++.|.++|+...
T Consensus 384 ~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~ 418 (473)
T KOG4564|consen 384 LYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWS 418 (473)
T ss_pred HHHHHHHHhccchheehheeecCHHHHHHHHHHHH
Confidence 34555566666667789999999999999999654
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=83.58 E-value=4.1 Score=25.85 Aligned_cols=37 Identities=14% Similarity=-0.009 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhc
Q psy9050 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55 (73)
Q Consensus 19 ~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 55 (73)
...+......+.+...|++-.+.|++.|+++++.+.+
T Consensus 265 ~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~ 301 (303)
T PF05296_consen 265 WFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWC 301 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhh
Confidence 3455666778888999999999999999999998864
No 16
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=68.78 E-value=5.6 Score=24.86 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHH
Q psy9050 20 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKN 51 (73)
Q Consensus 20 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 51 (73)
......+..+.+.+||++.-..=+.||+.++|
T Consensus 261 e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 261 EYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 44555567788899999999999999998764
No 17
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=66.63 E-value=4.8 Score=24.78 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=20.8
Q ss_pred HhhhhhHHHHHhhcHHHHHHHHHHh
Q psy9050 29 FNSVLNPLMYAYFNRDFREAFKNTL 53 (73)
Q Consensus 29 ~ns~~NPiiY~~~~~~fr~~~~~~~ 53 (73)
+.-++|++++...|+++|+..++..
T Consensus 249 ~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 249 LVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHhcceeEeEEcHHHHHHHHhcc
Confidence 3446899999999999999988753
No 18
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=60.12 E-value=18 Score=22.52 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhc
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 55 (73)
....++..+...+..+.-+..-+.++.+|+.++++++|
T Consensus 265 ~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 265 ALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred ccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 34456666777888888999999999999999998864
No 19
>KOG4193|consensus
Probab=57.51 E-value=54 Score=23.35 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=22.9
Q ss_pred HHHHHhhh---hhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 25 WIGYFNSV---LNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 25 ~l~~~ns~---~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
++..+|+. .=-+.|++++++.|++.++.+++.
T Consensus 548 lFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~ 582 (610)
T KOG4193|consen 548 LFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCG 582 (610)
T ss_pred HHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhccc
Confidence 34444443 335688999999999999988743
No 20
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=38.94 E-value=8.3 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhhHHHHHhhcHHHHHHHH
Q psy9050 23 LFWIGYFNSVLNPLMYAYFNRDFREAFK 50 (73)
Q Consensus 23 ~~~l~~~ns~~NPiiY~~~~~~fr~~~~ 50 (73)
...+..+-+++||++--+.-++||++++
T Consensus 280 ~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 280 ISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred hhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 3334556678999999999999999864
No 21
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=35.76 E-value=21 Score=18.17 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhcHHH
Q psy9050 17 EYIVTILFWIGYFNSVLNPLMYAYFNRDF 45 (73)
Q Consensus 17 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~f 45 (73)
.+...++..+..+|..+|-++|+++.+..
T Consensus 46 ~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 46 FWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred hHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 45566777777788888988888876543
No 22
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=35.32 E-value=15 Score=18.16 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=10.2
Q ss_pred hhhhHHHHHhhcH
Q psy9050 31 SVLNPLMYAYFNR 43 (73)
Q Consensus 31 s~~NPiiY~~~~~ 43 (73)
.-+|+++|.+..+
T Consensus 35 k~VN~~LY~L~k~ 47 (66)
T PF02295_consen 35 KEVNRVLYRLEKQ 47 (66)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 5689999987654
No 23
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=33.76 E-value=35 Score=18.91 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=19.1
Q ss_pred HHHhhhhhHHH---HHhhcHHHHHHHHHHh
Q psy9050 27 GYFNSVLNPLM---YAYFNRDFREAFKNTL 53 (73)
Q Consensus 27 ~~~ns~~NPii---Y~~~~~~fr~~~~~~~ 53 (73)
.|+....||+. =-+.++.|.+.++++.
T Consensus 101 ~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~ 130 (132)
T PF04628_consen 101 LYVKALCNPFYQPGTPIKSPKFDSRVRALA 130 (132)
T ss_dssp HHHHHHTSTTCGCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCCCCCcCCHHHHHHHHHHh
Confidence 56677788885 3566778888887765
No 24
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=22.06 E-value=41 Score=16.76 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=10.4
Q ss_pred HhhhhhHHHHHhhcH
Q psy9050 29 FNSVLNPLMYAYFNR 43 (73)
Q Consensus 29 ~ns~~NPiiY~~~~~ 43 (73)
+.|.+||.+|-...+
T Consensus 4 ~vs~vdpyvyq~lq~ 18 (66)
T PF10842_consen 4 MVSLVDPYVYQTLQS 18 (66)
T ss_pred ceeccCHHHHHHHHH
Confidence 356789998865544
No 25
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=21.93 E-value=1.3e+02 Score=15.73 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.0
Q ss_pred hhHHHHHhhcHHHHHHHHH
Q psy9050 33 LNPLMYAYFNRDFREAFKN 51 (73)
Q Consensus 33 ~NPiiY~~~~~~fr~~~~~ 51 (73)
+|=+++.+..+..|..+++
T Consensus 1 lNkf~~~L~~~~~r~~F~~ 19 (88)
T PF07746_consen 1 LNKFCWSLNDPENRERFLA 19 (88)
T ss_dssp HHHHHHGGGSHHHHHHHHH
T ss_pred ChHHHHHHcCHHHHHHHHH
Confidence 4677888888888888876
No 26
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=21.05 E-value=1.7e+02 Score=19.95 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=15.1
Q ss_pred hhhhHHHHHhhcHHHHHHHHH
Q psy9050 31 SVLNPLMYAYFNRDFREAFKN 51 (73)
Q Consensus 31 s~~NPiiY~~~~~~fr~~~~~ 51 (73)
-..||++|.-..++....++.
T Consensus 206 lvaNPiLy~~a~~~V~~~lk~ 226 (405)
T PF02101_consen 206 LVANPILYIKAVRAVASLLKG 226 (405)
T ss_pred HHhccHHHHHHHHHHHHHHhh
Confidence 368999998776666555554
Done!