Query psy9050
Match_columns 73
No_of_seqs 162 out of 1136
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 17:42:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2koe_A Human cannabinoid recep 99.4 5.4E-14 1.9E-18 63.3 1.0 37 19-55 2-38 (40)
2 4grv_A Neurotensin receptor ty 99.4 1.4E-14 4.9E-19 93.4 -1.7 40 18-57 450-489 (510)
3 2rh1_A Beta-2-adrenergic recep 99.3 2.5E-12 8.5E-17 82.6 3.2 49 6-57 431-479 (500)
4 3eml_A Human adenosine A2A rec 99.2 1.1E-11 3.7E-16 78.3 4.2 47 14-60 426-472 (488)
5 4eiy_A Adenosine receptor A2A/ 99.2 1.2E-11 4.1E-16 77.5 3.9 45 14-58 385-429 (447)
6 3pbl_A D(3) dopamine receptor, 99.2 2.2E-11 7.5E-16 77.0 4.0 48 11-58 428-475 (481)
7 2lnl_A C-X-C chemokine recepto 99.2 2E-11 6.9E-16 73.4 3.6 39 18-56 257-295 (296)
8 3uon_A Human M2 muscarinic ace 99.1 5.1E-11 1.8E-15 75.0 3.4 44 15-58 418-461 (467)
9 3v2y_A Sphingosine 1-phosphate 99.1 1.6E-11 5.5E-16 79.3 0.9 41 18-58 456-496 (520)
10 3vw7_A Proteinase-activated re 99.1 1.8E-11 6.1E-16 77.4 0.6 42 17-58 427-468 (484)
11 1u19_A Rhodopsin; G protein-co 99.0 1.7E-09 5.9E-14 65.7 7.2 45 13-57 282-326 (349)
12 2ks9_A Substance-P receptor; w 99.0 2.2E-09 7.5E-14 65.8 7.5 41 16-56 283-323 (364)
13 4dkl_A MU-type opioid receptor 99.0 6.2E-10 2.1E-14 69.9 4.7 40 16-55 417-456 (464)
14 3rze_A Histamine H1 receptor, 98.9 7.7E-10 2.6E-14 69.4 4.4 43 16-58 404-446 (452)
15 4amj_A Beta-1 adrenergic recep 98.9 1.8E-09 6.3E-14 64.6 5.5 42 15-57 262-303 (315)
16 3odu_A C-X-C chemokine recepto 98.8 3.6E-10 1.2E-14 71.7 -0.1 42 17-58 455-496 (502)
17 4ea3_A Fusion protein of nocic 98.8 4.5E-09 1.6E-13 66.3 4.2 40 18-57 373-412 (434)
18 3sn6_R Lysozyme, beta-2 adrene 98.7 1.2E-08 4.1E-13 65.6 4.0 42 15-57 452-493 (514)
19 2z73_A Rhodopsin; visual pigme 98.7 4.1E-08 1.4E-12 61.9 6.2 39 16-54 293-331 (448)
20 2ket_A Cathelicidin-6; antimic 70.9 3.7 0.00013 15.8 1.8 13 43-55 4-16 (27)
21 3noh_A Putative peptide bindin 52.4 3.9 0.00013 22.3 0.5 23 32-54 26-48 (139)
22 3eyi_A Z-DNA-binding protein 1 45.0 5 0.00017 19.6 0.1 24 20-43 28-52 (72)
No 1
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.39 E-value=5.4e-14 Score=63.32 Aligned_cols=37 Identities=27% Similarity=0.555 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhc
Q psy9050 19 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55 (73)
Q Consensus 19 ~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 55 (73)
++.++.+++++||++||+||++.+++||+++++++++
T Consensus 2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~ 38 (40)
T 2koe_A 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPS 38 (40)
T ss_dssp HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhh
Confidence 4567888999999999999999999999999987753
No 2
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.38 E-value=1.4e-14 Score=93.39 Aligned_cols=40 Identities=28% Similarity=0.591 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
.++.++.+|+|+|||+||+||+++|++||++++++++|+.
T Consensus 450 ~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C 489 (510)
T 4grv_A 450 YFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLC 489 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Confidence 4566888999999999999999999999999999997643
No 3
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.26 E-value=2.5e-12 Score=82.57 Aligned_cols=49 Identities=35% Similarity=0.560 Sum_probs=40.0
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 6 STLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 6 ~~~~~~~c~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
..+| .+..+..++.+..+|+++||++||+||++ +++||++++++++++.
T Consensus 431 ~~~~--~~~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~~~ 479 (500)
T 2rh1_A 431 HVIQ--DNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRR 479 (500)
T ss_dssp HHHS--TTSSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC--
T ss_pred HHHc--CCcccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhhhc
Confidence 3455 33467788899999999999999999996 9999999999996543
No 4
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.21 E-value=1.1e-11 Score=78.30 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccCcc
Q psy9050 14 DCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPWC 60 (73)
Q Consensus 14 ~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~ 60 (73)
.....+..++.+++++||++||+||++++++||+++++++++...+.
T Consensus 426 ~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~~ 472 (488)
T 3eml_A 426 HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ 472 (488)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTSCC
T ss_pred cccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhccccc
Confidence 45677788899999999999999999999999999999998765443
No 5
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.19 E-value=1.2e-11 Score=77.47 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccC
Q psy9050 14 DCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58 (73)
Q Consensus 14 ~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 58 (73)
..+..+..++.+++++||++||+||++++++||+++++++++...
T Consensus 385 ~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~~ 429 (447)
T 4eiy_A 385 HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL 429 (447)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC-
T ss_pred ccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHHh
Confidence 456677888999999999999999999999999999999976554
No 6
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=76.98 Aligned_cols=48 Identities=40% Similarity=0.762 Sum_probs=40.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccC
Q psy9050 11 PPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58 (73)
Q Consensus 11 ~~c~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 58 (73)
+.+.....++.++.+++++||++||+||++++++||++++++++|..+
T Consensus 428 ~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~ 475 (481)
T 3pbl_A 428 QTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRP 475 (481)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC---
T ss_pred ccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhccCc
Confidence 355667888889999999999999999999999999999999976543
No 7
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.16 E-value=2e-11 Score=73.42 Aligned_cols=39 Identities=28% Similarity=0.640 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
..+.++.+++++||++||+||++++++||++++++++|+
T Consensus 257 ~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~cr 295 (296)
T 2lnl_A 257 RALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMH 295 (296)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 345678889999999999999999999999999999763
No 8
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.09 E-value=5.1e-11 Score=74.97 Aligned_cols=44 Identities=36% Similarity=0.709 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccC
Q psy9050 15 CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58 (73)
Q Consensus 15 ~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 58 (73)
.+..+..++.+++++||++||+||++++++||++++++++|+.+
T Consensus 418 ~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~ 461 (467)
T 3uon_A 418 IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYK 461 (467)
T ss_dssp SCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC----
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhhcc
Confidence 46778889999999999999999999999999999999976543
No 9
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.09 E-value=1.6e-11 Score=79.28 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccC
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 58 (73)
....++.+++++|||+||+||++++++||++++++++++..
T Consensus 456 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 496 (520)
T 3v2y_A 456 FRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLE 496 (520)
T ss_dssp TSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcc
Confidence 34556778999999999999999999999999999976554
No 10
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.07 E-value=1.8e-11 Score=77.44 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccC
Q psy9050 17 EYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58 (73)
Q Consensus 17 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 58 (73)
..++.++.+++++||++||+||++++++||++++++++|+..
T Consensus 427 ~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~~~~ 468 (484)
T 3vw7_A 427 YFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKES 468 (484)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHTSSCC-------------
T ss_pred HHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhhccC
Confidence 455678889999999999999999999999999999876544
No 11
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=98.99 E-value=1.7e-09 Score=65.70 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 13 CDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 13 c~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
...+.....+..+++++||++||+||++++++||++++++++|..
T Consensus 282 ~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~ 326 (349)
T 1u19_A 282 SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK 326 (349)
T ss_dssp SCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSC
T ss_pred cccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccC
Confidence 344566777888899999999999999999999999999986543
No 12
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=98.98 E-value=2.2e-09 Score=65.84 Aligned_cols=41 Identities=22% Similarity=0.588 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcc
Q psy9050 16 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 56 (73)
Q Consensus 16 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 56 (73)
...++.+..+++++||++||+||++.+++||++++++++++
T Consensus 283 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 323 (364)
T 2ks9_A 283 IQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCC 323 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Confidence 45567778889999999999999999999999999998754
No 13
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=98.97 E-value=6.2e-10 Score=69.87 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhc
Q psy9050 16 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55 (73)
Q Consensus 16 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 55 (73)
....+.++.+++++||++||+||++++++||+++++++++
T Consensus 417 ~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~~ 456 (464)
T 4dkl_A 417 QTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIP 456 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhcc
Confidence 4556678888999999999999999999999999998643
No 14
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=98.95 E-value=7.7e-10 Score=69.36 Aligned_cols=43 Identities=37% Similarity=0.738 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccC
Q psy9050 16 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58 (73)
Q Consensus 16 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 58 (73)
+..+..++.+++++||++||+||++++++||++++++++++..
T Consensus 404 ~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~ 446 (452)
T 3rze_A 404 NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSG 446 (452)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC---
T ss_pred cHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhccc
Confidence 3445668888999999999999999999999999999976543
No 15
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=98.93 E-value=1.8e-09 Score=64.59 Aligned_cols=42 Identities=40% Similarity=0.884 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 15 CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 15 ~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
.+.....+..+++++||++||++|+ ++++||+++++++++..
T Consensus 262 ~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~ 303 (315)
T 4amj_A 262 VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPR 303 (315)
T ss_dssp SCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCC
Confidence 4566777888899999999999999 89999999999997544
No 16
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=98.83 E-value=3.6e-10 Score=71.74 Aligned_cols=42 Identities=24% Similarity=0.533 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhcccC
Q psy9050 17 EYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 58 (73)
Q Consensus 17 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 58 (73)
..++.++.+++++||++||+||++++++||++++++++++.+
T Consensus 455 ~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~ 496 (502)
T 3odu_A 455 HKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRP 496 (502)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccCCc
Confidence 344568888999999999999999999999999999976554
No 17
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=98.80 E-value=4.5e-09 Score=66.29 Aligned_cols=40 Identities=30% Similarity=0.625 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 18 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
....++.+++++||++||+||++++++||++++++++++.
T Consensus 373 ~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~~~ 412 (434)
T 4ea3_A 373 AILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASA 412 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3456677789999999999999999999999999886543
No 18
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=98.70 E-value=1.2e-08 Score=65.65 Aligned_cols=42 Identities=40% Similarity=0.691 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhhccc
Q psy9050 15 CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 57 (73)
Q Consensus 15 ~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 57 (73)
.+..++.++.+++++||++||+||+ ++++||++++++++++.
T Consensus 452 ~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~ 493 (514)
T 3sn6_R 452 IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRR 493 (514)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC---
T ss_pred cchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCc
Confidence 4566778888999999999999999 89999999999986543
No 19
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=98.69 E-value=4.1e-08 Score=61.94 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHhhcHHHHHHHHHHhh
Q psy9050 16 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLS 54 (73)
Q Consensus 16 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 54 (73)
......+..+++++||++||+||.+++++||++++++++
T Consensus 293 ~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~ 331 (448)
T 2z73_A 293 TPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331 (448)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred ChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence 455667778899999999999999999999999999885
No 20
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=70.88 E-value=3.7 Score=15.78 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhc
Q psy9050 43 RDFREAFKNTLSF 55 (73)
Q Consensus 43 ~~fr~~~~~~~~~ 55 (73)
+.||+.++++++.
T Consensus 4 krfrkkfkklfkk 16 (27)
T 2ket_A 4 KRFRKKFKKLFKK 16 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6788888888864
No 21
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=52.43 E-value=3.9 Score=22.29 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.8
Q ss_pred hhhHHHHHhhcHHHHHHHHHHhh
Q psy9050 32 VLNPLMYAYFNRDFREAFKNTLS 54 (73)
Q Consensus 32 ~~NPiiY~~~~~~fr~~~~~~~~ 54 (73)
|+||.+=.+.+.++|+.++.+..
T Consensus 26 ~iNp~ld~~~~~~~R~~Lka~~~ 48 (139)
T 3noh_A 26 CMNPLLDKLSDEDIREQLKAFVT 48 (139)
T ss_dssp EECTTSGGGCCHHHHHHHHHHHT
T ss_pred EeccccCccccHHHHHHHHHHhc
Confidence 67888888899999999998764
No 22
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=45.03 E-value=5 Score=19.65 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhh-hhHHHHHhhcH
Q psy9050 20 VTILFWIGYFNSV-LNPLMYAYFNR 43 (73)
Q Consensus 20 ~~~~~~l~~~ns~-~NPiiY~~~~~ 43 (73)
..++.-|+.=.+= +||-+|.+.++
T Consensus 28 L~IAK~LGlktAK~VNp~LY~m~~~ 52 (72)
T 3eyi_A 28 LVIAQALGMRTAKDVNRDLYRMKSR 52 (72)
T ss_dssp HHHHHHTTCCSGGGTHHHHHHHHHT
T ss_pred HHHHHHhCcchhhhcCHHHHHHHHc
Confidence 4455555544444 99999998765
Done!