RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9050
(73 letters)
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 28.3 bits (63), Expect = 0.27
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKN 51
Y + I I + + +NP++YA+ ++F++ FKN
Sbjct: 272 YSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKN 305
>gnl|CDD|216016 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
PB1. Two GTP binding sites exist in this protein.
Length = 740
Score = 27.5 bits (61), Expect = 0.55
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 29 FNSVLNP----LMYAYFNRDFREAFKNTLSFVFPWCFS 62
+N LNP M Y +D + K LS + P FS
Sbjct: 310 WNECLNPEAMLAMLTYITKDSPQWMKELLS-IAPVLFS 346
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 27.2 bits (61), Expect = 0.62
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 30 NSVLNPLMYAYFNRDFREAFKNTLS 54
N V NP YA +D F T+S
Sbjct: 175 NGVANP--YAQMRKDLGFEFCRTVS 197
>gnl|CDD|223074 PHA03396, lef-9, late expression factor 9; Provisional.
Length = 493
Score = 27.2 bits (61), Expect = 0.62
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 26 IGYFNSVLNPLMYAYFNRDFREAFKNTLS 54
I YFNS++ L+ Y + R + LS
Sbjct: 51 INYFNSLIEQLISVYQECELRNEHTDLLS 79
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 26.5 bits (59), Expect = 1.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 4 LISTLCGPPCDCPEYIVTILF-WIGYFNSVLNPLMY 38
L+ +LC ++ W+ Y NS LNP++Y
Sbjct: 216 LLDSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|233848 TIGR02400, trehalose_OtsA, alpha,alpha-trehalose-phosphate synthase
[UDP-forming]. This enzyme catalyzes the key,
penultimate step in biosynthesis of trehalose, a
compatible solute made as an osmoprotectant in some
species in all three domains of life. The gene symbol
OtsA stands for osmotically regulated trehalose
synthesis A. Trehalose helps protect against both
osmotic and thermal stresses, and is made from two
glucose subunits. This model excludes
glucosylglycerol-phosphate synthase, an enzyme of an
analogous osmoprotectant system in many cyanobacterial
strains. This model does not identify archaeal examples,
as they are more divergent than
glucosylglycerol-phosphate synthase. Sequences that
score in the gray zone between the trusted and noise
cutoffs include a number of yeast multidomain proteins
in which the N-terminal domain may be functionally
equivalent to this family. The gray zone also includes
the OtsA of Cornyebacterium glutamicum (and related
species), shown to be responsible for synthesis of only
trace amounts of trehalose while the majority is
synthesized by the TreYZ pathway; the significance of
OtsA in this species is unclear (see Wolf, et al.,
PMID:12890033) [Cellular processes, Adaptations to
atypical conditions].
Length = 456
Score = 25.7 bits (57), Expect = 2.1
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 12 PCDCPEYIVTILFWIGYFNSVLNPLM-----YAYFNRDFREAFK 50
P E V ++ G+ NS L PL ++R EA++
Sbjct: 69 PVFLSEEDVD-GYYNGFSNSTLWPLFHYRPDLIRYDRKAWEAYR 111
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 24.7 bits (54), Expect = 4.9
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 29 FNSVLNPLM--YAYFNRDFREAFKNTLSFVFPWCFSCFKNAHT 69
F + N L+ + + L ++F + C KN T
Sbjct: 102 FGYLQNKLVTPLDFILSIVEASLSFVLYYIFNYSIPCLKNGRT 144
>gnl|CDD|227104 COG4763, COG4763, Predicted membrane protein [Function unknown].
Length = 388
Score = 24.5 bits (53), Expect = 5.2
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 24 FWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
+ YF P F F+
Sbjct: 63 CRMPYFFLYSGPFRMPVFFFISGYLFRRRRYI 94
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 24.4 bits (53), Expect = 7.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 29 FNSVLNPLMYAYFNRDFREAFK 50
+ +LNP++YA+ DF + F+
Sbjct: 297 LHCLLNPILYAFLGNDFLKRFR 318
>gnl|CDD|206164 pfam13994, PgaD, PgaD-like protein. This family includes the
PgaD protein from E. coli. The homopolymer
poly-beta-1,6-N-acetyl-D-glucosamine (beta-1,6-GlcNAc;
PGA) serves as an adhesin for the maintenance of
biofilm structural stability in eubacteria. The pgaABCD
operon is required for its synthesis and export. It has
been shown that PgaD is essential for this process.
Length = 138
Score = 23.8 bits (52), Expect = 7.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 18 YIVTILFWIGYF 29
I+T+LFW G+
Sbjct: 18 GILTLLFWGGWL 29
>gnl|CDD|113849 pfam05094, LEF-9, Late expression factor 9 (LEF-9). Late
expression factor 9 (LEF-9) is one of the primary
components of RNA polymerase produced by baculoviruses.
LEF-9 is homologous to the largest beta-subunit of
prokaryotic DNA-directed RNA polymerase.
Length = 487
Score = 23.9 bits (52), Expect = 9.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 26 IGYFNSVLNPLMYAYFNRDFREAFKNTLS 54
YFNS++ L+ Y D R + LS
Sbjct: 48 CNYFNSLIEQLINVYQENDERNEHTDLLS 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.333 0.147 0.532
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,623,891
Number of extensions: 269020
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 23
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (24.2 bits)