RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9050
(73 letters)
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 69.4 bits (169), Expect = 4e-16
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
++++T C C + + W+GY NS LNP++Y FN +FR+AF LS
Sbjct: 421 HVLNTHC-QTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC 472
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 67.8 bits (165), Expect = 2e-15
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
+ C P +++ + + + NSV+NP +YAY R+FR+ F+ +
Sbjct: 415 NCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS 467
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 65.9 bits (160), Expect = 1e-14
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLS 54
+ C P +++ + + + NSV+NP +YAY R+FR+ F+ +
Sbjct: 374 NCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 425
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 65.3 bits (159), Expect = 1e-14
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
++ + + + +L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 442 NIVHVIQ--DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL 491
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 65.1 bits (158), Expect = 2e-14
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
LI+T C P + TI +W+ Y NS +NP YA N F++ FK+ L
Sbjct: 408 VLINTFC--APCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 64.1 bits (155), Expect = 4e-14
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPWCFS 62
L+ C + + NS NP++Y N++ R AF + F
Sbjct: 441 LLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLFQ 500
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 63.9 bits (155), Expect = 4e-14
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+++ C C E++ W+GY NS LNPL+Y N +F++ FK L
Sbjct: 393 FMVIAFC--KNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 62.8 bits (152), Expect = 1e-13
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
++ + + + +L WIGY NS NPL+Y + DFR AF+ L
Sbjct: 428 NIVHVIQ--DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL 475
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 59.0 bits (143), Expect = 2e-12
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 3 YLISTLCGPPCDC--PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 55
+ + + P+++ W+GY NS +NP++Y + DFR+AFK L+F
Sbjct: 248 FFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF 301
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 42.7 bits (101), Expect = 1e-06
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPWCFSC 63
+ + W+ +++ NP++Y N FR FK+ F C
Sbjct: 285 QVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKH----AFRCCPFI 326
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 40.9 bits (96), Expect = 5e-06
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 3 YLISTLCGPPCDCPEYIVTILF--WIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
++++ G + + F +GY NS LNP++YA+ + +F+ F+
Sbjct: 356 FVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFC 408
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 38.8 bits (90), Expect = 3e-05
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 4 LISTLCGPPCDCPEYIV-TILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
+I L P + + +GY NS LNP++YA+ + +F+ F+
Sbjct: 404 IIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFC 454
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 37.6 bits (87), Expect = 8e-05
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 10 GPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPWC 60
GP Y + +++ NP++Y+ + FREA T +V C
Sbjct: 287 GPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCC 337
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 36.4 bits (84), Expect = 3e-04
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 18 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
++I + +F+ LNP++YA+ F+ + ++ L
Sbjct: 456 KWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 33.5 bits (77), Expect = 0.002
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 3 YLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
D +TI + ++V NP++Y N+ FR TL
Sbjct: 272 VAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.048
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 19 IVTILFWIG------YFNSVLNPLMYAY 40
+T+LF+IG Y N+ L P +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILED 326
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 24.3 bits (52), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 29 FNSVLNPLMYAYFNRDFREAFKNTLS 54
NS +NP++YA ++D R AF++
Sbjct: 12 LNSTVNPIIYALRSKDLRHAFRSMFP 37
>3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1
UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A
1p4n_A* 1xix_A 1xf8_A 1xe4_A
Length = 336
Score = 24.7 bits (53), Expect = 3.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 21 TILFWIGYFNSVLNPLMYAYF 41
+IG + VL+P +YA
Sbjct: 313 APREYIGEIDKVLDPEVYAEL 333
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein
COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB:
2f8b_A
Length = 56
Score = 23.3 bits (50), Expect = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 43 RDFREAFKNTLSFVFPWC 60
R ++ F +TLSFV PWC
Sbjct: 35 RTLQQLFLSTLSFVCPWC 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.333 0.147 0.532
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,118,504
Number of extensions: 49196
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 23
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.9 bits)