RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9050
         (73 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 38.0 bits (87), Expect = 3e-05
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 1   MGYLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 53
            G           D     +TI  +    ++V NP++Y   N+ FR     TL
Sbjct: 269 AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 321


>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
           ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 223

 Score = 24.1 bits (52), Expect = 1.6
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 37  MYAYFNRDFREAFKNTLSFVFP 58
           +   FNR  RE  +N   F + 
Sbjct: 79  IAVDFNRAVREFKENPGQFHYK 100


>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse
          mammary tumor virus [TaxId: 11757]}
          Length = 26

 Score = 21.9 bits (46), Expect = 3.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 58 PWCFSCFKNAH 68
          P CFSC K  H
Sbjct: 3  PVCFSCGKTGH 13


>d1ne9a2 d.108.1.4 (A:165-335) Peptidyltransferase FemX {Weissella
           viridescens [TaxId: 1629]}
          Length = 171

 Score = 23.2 bits (49), Expect = 3.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 22  ILFWIGYFNSVLNPLMYAYFNRD 44
              +IG  + VL+P +YA   +D
Sbjct: 149 PREYIGEIDKVLDPEVYAELVKD 171


>d2ewla1 g.91.1.1 (A:5-56) E7 oncoprotein {Human papillomavirus
          type 45 [TaxId: 10593]}
          Length = 52

 Score = 21.2 bits (45), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 43 RDFREAFKNTLSFVFPWC 60
          R  ++ F +TLSFV PWC
Sbjct: 31 RTLQQLFLSTLSFVCPWC 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.147    0.532 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,883
Number of extensions: 11366
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 11
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.0 bits)