BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9052
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 108/209 (51%), Gaps = 14/209 (6%)
Query: 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTL 61
+Y + +T+++TRY+ LQL+ DI+ GR+ C+ +L SY +Q+E G+Y+ E H +
Sbjct: 96 FYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGV 155
Query: 62 EYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQ 121
+Y+ DF L P E L + V++ H + ++ A+ ++ A++L YG
Sbjct: 156 DYVSDFKLAPNQTKE---------LEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGV 206
Query: 122 ETFLVKDEHGLETILGVTLKGIIVSGTN-SSKFYKWAEIANVLNHKKNFGIETSNAD--- 177
+ KD G++ ILGV G++V + W ++ + + +F I+ +
Sbjct: 207 DLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQEQ 266
Query: 178 -DHIVNFVFPDVESAKYVFRMCVHQHTFY 205
+ + F P +AK ++++CV HTF+
Sbjct: 267 YESTIGFKLPSYRAAKKLWKVCVEHHTFF 295
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 108/209 (51%), Gaps = 14/209 (6%)
Query: 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTL 61
+Y + +T+++TRY+ LQL+ DI+ GR+ C+ +L SY +Q+E G+Y+ E H +
Sbjct: 79 FYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGV 138
Query: 62 EYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQ 121
+Y+ DF L P E L + V++ H + ++ A+ ++ A++L YG
Sbjct: 139 DYVSDFKLAPNQTKE---------LEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGV 189
Query: 122 ETFLVKDEHGLETILGVTLKGIIVSGTN-SSKFYKWAEIANVLNHKKNFGIETSNAD--- 177
+ KD G++ ILGV G++V + W ++ + + +F I+ +
Sbjct: 190 DLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQEQ 249
Query: 178 -DHIVNFVFPDVESAKYVFRMCVHQHTFY 205
+ + F P +AK ++++CV HTF+
Sbjct: 250 YESTIGFKLPSYRAAKKLWKVCVEHHTFF 278
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 109/209 (52%), Gaps = 14/209 (6%)
Query: 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTL 61
+Y + +++++TRY+ LQL++DI+ GR+ C+ +L SY +Q+E G+Y+ +
Sbjct: 81 FYPPDPAQLSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGS 140
Query: 62 EYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQ 121
+Y+ +F P E L D VI+ H + G++ AE +++ A++L YG
Sbjct: 141 DYISEFRFAPNHTKE---------LEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGV 191
Query: 122 ETFLVKDEHGLETILGVTLKGIIVSGTN-SSKFYKWAEIANVLNHKKNFGIETSNAD--- 177
+ KD G+E +LGV G+++ + W ++ + + NF I+ +
Sbjct: 192 DLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWPKVLKISYKRNNFYIKIRPGEFEQ 251
Query: 178 -DHIVNFVFPDVESAKYVFRMCVHQHTFY 205
+ + F P+ +AK ++++CV HTF+
Sbjct: 252 FESTIGFKLPNHRAAKRLWKVCVEHHTFF 280
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 109/209 (52%), Gaps = 14/209 (6%)
Query: 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTL 61
+Y + +++++TRY+ LQL++DI+ GR+ C+ +L SY +Q+E G+Y+ +
Sbjct: 81 FYPPDPAQLSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDYDPDECGS 140
Query: 62 EYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQ 121
+Y+ +F P E L D VI+ H + G++ AE +++ A++L YG
Sbjct: 141 DYISEFRFAPNHTKE---------LEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGV 191
Query: 122 ETFLVKDEHGLETILGVTLKGIIVSGTN-SSKFYKWAEIANVLNHKKNFGIETSNAD--- 177
+ KD G+E +LGV G+++ + W ++ + + NF I+ +
Sbjct: 192 DLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWPKVLKISYKRNNFYIKIRPGEFEQ 251
Query: 178 -DHIVNFVFPDVESAKYVFRMCVHQHTFY 205
+ + F P+ +AK ++++CV HTF+
Sbjct: 252 FESTIGFKLPNHRAAKRLWKVCVEHHTFF 280
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T+ FLQ+K I+ I C + AV+LASY +QA++G+YN E H YL + L
Sbjct: 95 LIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRL 154
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ ++E H E+ + + H G+ + + Y+ AQ L+ YG F +K++
Sbjct: 155 LPQRVLEQ-HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 213
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E LGV G+ + + W+EI N+ + K F I+ D +FVF
Sbjct: 214 KGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKP--IDKKAPDFVF 271
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P + K + +C+ H YM
Sbjct: 272 YAPRLRINKRILALCMGNHELYM 294
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T+ FLQ+K I+ I C + AV+LASY +QA++G+YN E H YL + L
Sbjct: 95 LIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRL 154
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ ++E H E+ + + H G+ + + Y+ AQ L+ YG F +K++
Sbjct: 155 LPQRVLEQ-HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 213
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E LGV G+ + + W+EI N+ + K F I+ D +FVF
Sbjct: 214 KGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKP--IDKKAPDFVF 271
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P + K + +C+ H YM
Sbjct: 272 YAPRLRINKRILALCMGNHELYM 294
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T+ FLQ+K I+ I C + AV+LASY +QA++G+YN E H YL + L
Sbjct: 95 LIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRL 154
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ ++E H E+ + + H G+ + + Y+ AQ L+ YG F +K++
Sbjct: 155 LPQRVLEQ-HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 213
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E LGV G+ + + W+EI N+ + K F I+ D +FVF
Sbjct: 214 KGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKP--IDKKAPDFVF 271
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P + K + +C+ H YM
Sbjct: 272 YAPRLRINKRILALCMGNHELYM 294
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T+ FLQ+K I+ I C + AV+LASY +QA++G+YN E H YL + L
Sbjct: 93 LIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRL 152
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ ++E H E+ + + H G+ + + Y+ AQ L+ YG F +K++
Sbjct: 153 LPQRVLEQ-HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 211
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E LGV G+ + + W+EI N+ + K F I+ D +FVF
Sbjct: 212 KGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKP--IDKKAPDFVF 269
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P + K + +C+ H YM
Sbjct: 270 YAPRLRINKRILALCMGNHELYM 292
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T+ FLQ+K I+ I C + AV+LASY +QA++G+YN E H YL + L
Sbjct: 93 LIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRL 152
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ ++E H E+ + + H G+ + + Y+ AQ L+ YG F +K++
Sbjct: 153 LPQRVLEQ-HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 211
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E LGV G+ + + W+EI N+ + K F I+ D +FVF
Sbjct: 212 KGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKP--IDKKAPDFVF 269
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P + K + +C+ H YM
Sbjct: 270 YAPRLRINKRILALCMGNHELYM 292
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T+ FLQ+K I+ I C + AV+LASY +QA++G+YN E H YL + L
Sbjct: 93 LIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRL 152
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ ++E H E+ + + H G+ + + Y+ AQ L+ YG F +K++
Sbjct: 153 LPQRVLEQ-HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNK 211
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E LGV G+ + + W+EI N+ + K F I+ D +FVF
Sbjct: 212 KGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKP--IDKKAPDFVF 269
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P + K + +C+ H YM
Sbjct: 270 YAPRLRINKRILALCMGNHELYM 292
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ ++T+ FLQ+K I+ I C + AV+L SY +QA+FG+YN E H YL L
Sbjct: 92 LIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVHKSGYLSSERL 151
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ +++ H ++ D + H+ G+ + A Y+ AQ L+ YG F +K++
Sbjct: 152 IPQRVMDQ-HKLTRDQWEDRIQVWHAEHRGMLKDNAMLEYLKIAQDLEMYGINYFEIKNK 210
Query: 130 HGLETILGVTLKGIIVSGTN---SSKF-YKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G + LGV G+ + + + K + W+EI N+ + K F I+ D +FVF
Sbjct: 211 KGTDLWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDKKFVIKP--IDKKAPDFVF 268
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P + K + ++C+ H YM
Sbjct: 269 YAPRLRINKRILQLCMGNHELYM 291
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 5/201 (2%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T++ FLQ+K I++ +I C + +V+LASY +QA++G+Y+ H +L L
Sbjct: 97 LVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEEL 156
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
PK ++ N + E + + ++ G ++ AE Y+ AQ L+ YG F ++++
Sbjct: 157 LPKRVI-NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNK 215
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E +LGV G+ + + + W EI N+ K F I+ + + F
Sbjct: 216 KGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNS 275
Query: 186 PDVESAKYVFRMCVHQHTFYM 206
+ K + ++C+ H +M
Sbjct: 276 SKLRVNKLILQLCIGNHDLFM 296
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 5/201 (2%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T++ FLQ+K I++ +I C + +V+LASY +QA++G+Y+ H +L L
Sbjct: 110 LVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEEL 169
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
PK ++ N + E + + ++ G ++ AE Y+ AQ L+ YG F ++++
Sbjct: 170 LPKRVI-NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNK 228
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E +LGV G+ + + + W EI N+ K F I+ + + F
Sbjct: 229 KGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNS 288
Query: 186 PDVESAKYVFRMCVHQHTFYM 206
+ K + ++C+ H +M
Sbjct: 289 SKLRVNKLILQLCIGNHDLFM 309
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 5/201 (2%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T++ FLQ+K I++ +I C + +V+LASY +QA++G+Y+ H +L L
Sbjct: 110 LVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEEL 169
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
PK ++ N + E + + ++ G ++ AE Y+ AQ L+ YG F ++++
Sbjct: 170 LPKRVI-NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNK 228
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E +LGV G+ + + + W EI N+ K F I+ + + F
Sbjct: 229 KGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNS 288
Query: 186 PDVESAKYVFRMCVHQHTFYM 206
+ K + ++C+ H +M
Sbjct: 289 SKLRVNKLILQLCIGNHDLFM 309
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 100/201 (49%), Gaps = 5/201 (2%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T++ FLQ+K I++ ++ C + +V+LASY +QA++G+Y+ H +L L
Sbjct: 92 LVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEEL 151
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
PK ++ N + E + + ++ G ++ AE Y+ AQ L+ YG F ++++
Sbjct: 152 LPKRVI-NLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNK 210
Query: 130 HGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
G E +LGV G+ + + + W EI N+ K F I+ + + F
Sbjct: 211 KGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNS 270
Query: 186 PDVESAKYVFRMCVHQHTFYM 206
+ K + ++C+ H +M
Sbjct: 271 SKLRVNKLILQLCIGNHDLFM 291
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 12/213 (5%)
Query: 2 YYVSGIS--LITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERH 59
+Y +S LI D +T+ FLQ+K I+ I C + AV+LASY +Q+++G++N E H
Sbjct: 84 FYPEDVSEELIQD-ITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH 142
Query: 60 TLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
YL L P+ ++E H ++ + + H G+ + A Y+ AQ L+ Y
Sbjct: 143 KSGYLAGDKLLPQRVLEQ-HKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMY 201
Query: 120 GQETFLVKDEHGLETILGVTLKGIIVSGTN---SSKF-YKWAEIANVLNHKKNFGIETSN 175
G F +K++ G E LGV G+ + N + K + W+EI N+ + K F I+
Sbjct: 202 GVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKP-- 259
Query: 176 ADDHIVNFVF--PDVESAKYVFRMCVHQHTFYM 206
D +FVF P + K + +C+ H YM
Sbjct: 260 IDKKAPDFVFYAPRLRINKRILALCMGNHELYM 292
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 12/213 (5%)
Query: 2 YYVSGIS--LITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERH 59
+Y +S LI D +T+ FLQ+K I+ I C + AV+LASY +Q+++G++N E H
Sbjct: 84 FYPEDVSEELIQD-ITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH 142
Query: 60 TLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
YL L P+ ++E H ++ + + H G+ + A Y+ AQ L+ Y
Sbjct: 143 KSGYLAGDKLLPQRVLEQ-HKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMY 201
Query: 120 GQETFLVKDEHGLETILGVTLKGIIVSGTN---SSKF-YKWAEIANVLNHKKNFGIETSN 175
G F +K++ G E LGV G+ + N + K + W+EI N+ + K F I+
Sbjct: 202 GVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKP-- 259
Query: 176 ADDHIVNFVF--PDVESAKYVFRMCVHQHTFYM 206
D +FVF P + K + +C+ H YM
Sbjct: 260 IDKKAPDFVFYAPRLRINKRILALCMGNHELYM 292
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 12/212 (5%)
Query: 2 YYVSGIS--LITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERH 59
+Y +S LI D +T+ FLQ+K I+ I C + AV+LASY +Q+++G++N E H
Sbjct: 81 FYPEDVSEELIQD-ITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH 139
Query: 60 TLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
YL L P+ ++E H ++ + + H G + A Y+ AQ L+ Y
Sbjct: 140 KSGYLAGDKLLPQRVLEQ-HKLNKDQWEERIQVWHEEHRGXLREDAVLEYLKIAQDLEXY 198
Query: 120 GQETFLVKDEHGLETILGVTLKGIIVSGTN---SSKF-YKWAEIANVLNHKKNFGIETSN 175
G F +K++ G E LGV G+ + N + K + W+EI N+ + K F I+
Sbjct: 199 GVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKP-- 256
Query: 176 ADDHIVNFVF--PDVESAKYVFRMCVHQHTFY 205
D +FVF P + K + +C H Y
Sbjct: 257 IDKKAPDFVFYAPRLRINKRILALCXGNHELY 288
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 9/203 (4%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T +LQ+KN I+ I C + +V+LASY +QA G++N H +L + L
Sbjct: 93 LIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRL 152
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE 129
P+ V + H E ++ G+ + A Y+ AQ L+ YG F ++++
Sbjct: 153 LPQ-RVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNK 211
Query: 130 HGLETILGVTLKGIIVSGTN---SSKF-YKWAEIANVLNHKKNFGIETSNADDHIVNFVF 185
E LGV G+ + + + K + W+EI N+ + + F I+ D +FVF
Sbjct: 212 KNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKP--IDKKAPDFVF 269
Query: 186 --PDVESAKYVFRMCVHQHTFYM 206
P V K + +C+ H YM
Sbjct: 270 FAPRVRVNKRILALCMGNHELYM 292
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain
Length = 109
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+T+++TRY+ LQL+ DI+ GR+ C+ +L SY +Q+E G+Y+ E H ++Y+ DF L
Sbjct: 9 LTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKL 68
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQL 116
P E L + V++ H + ++ A+ ++ A++L
Sbjct: 69 APNQTKE---------LEEKVMELHKSYRSMTPAQADLEFLENAKKL 106
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEY--LKDFALFPKDLVEN 77
++Q ++DI+ G + D A A + Q +FG +N ++H + LKDF PK+ V+
Sbjct: 33 YVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDF--LPKEYVK- 89
Query: 78 GHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILG 137
++ + Q H +S+ A+ Y+ A+ L YG FLVK++ + L
Sbjct: 90 ------QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLV 143
Query: 138 VTLKGI 143
L GI
Sbjct: 144 PRLLGI 149
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEY--LKDFALFPKDLVEN 77
++Q ++DI+ G + D A A + Q +FG +N ++H + LKDF PK+ V+
Sbjct: 8 YVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDF--LPKEYVK- 64
Query: 78 GHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILG 137
++ + Q H +S+ A+ Y+ A+ L YG FLVK++ + L
Sbjct: 65 ------QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLV 118
Query: 138 VTLKGI 143
L GI
Sbjct: 119 PRLLGI 124
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEY--LKDFALFPKDLVEN 77
++Q ++DI+ G + D A A + Q +FG +N ++H + LKDF PK+ V+
Sbjct: 187 YVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDF--LPKEYVKQ 244
Query: 78 GHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILG 137
ER + Q H +S+ A+ Y+ A+ L YG FLVK++ + L
Sbjct: 245 KG----ER---KIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLV 297
Query: 138 VTLKGI 143
L GI
Sbjct: 298 PRLLGI 303
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGH 79
++Q ++DI+ G + D A A Y Q +FG +N ++H +L+ PK+ ++
Sbjct: 17 YVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIK--- 73
Query: 80 NGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVT 139
++ + H +S+ A+ Y+ A+ L YG FLVK++ + L
Sbjct: 74 ----QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPR 129
Query: 140 LKGI 143
L GI
Sbjct: 130 LLGI 133
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGH 79
++Q ++DI+ G + D A A Y Q +FG +N ++H +L+ PK+ ++
Sbjct: 22 YVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIK--- 78
Query: 80 NGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVT 139
++ + H +S+ A+ Y+ A+ L YG FLVK++ + L
Sbjct: 79 ----QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPR 134
Query: 140 LKGI 143
L GI
Sbjct: 135 LLGI 138
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGH 79
++Q ++DI+ G + D A A Y Q +FG +N ++H +L+ PK+ ++
Sbjct: 8 YVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIK--- 64
Query: 80 NGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVT 139
++ + H +S+ A+ Y+ A+ L YG FLVK++ + L
Sbjct: 65 ----QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPR 120
Query: 140 LKGI 143
L GI
Sbjct: 121 LLGI 124
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGH 79
++Q ++DI+ G + + A + Q +FG + +H +L PK+ ++
Sbjct: 33 YVQARDDILNGSHPVSFEKACEFGGFQAQIQFGPHVEHKHKPGFLDLKEFLPKEYIK--Q 90
Query: 80 NGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVT 139
G +R + Q+H +S+ A+ Y+ A+ L YG FLVK++ + L
Sbjct: 91 RGAEKR----IFQEHKNCGEMSEIEAKVKYVKLARSLRTYGVSFFLVKEKMKGKNKLVPR 146
Query: 140 LKGI 143
L GI
Sbjct: 147 LLGI 150
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 20 FLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGH 79
++Q ++DI+ G + D A A Y Q +FG +N ++H +L+ PK+ ++
Sbjct: 28 YVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIK--- 84
Query: 80 NGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYG 120
++ + H +S+ A+ Y+ A+ L YG
Sbjct: 85 ----QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYG 121
>pdb|1V54|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2EIJ|C Chain C, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|P Chain P, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|C Chain C, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|P Chain P, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|C Chain C, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|P Chain P, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|C Chain C, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|P Chain P, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|C Chain C, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|P Chain P, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|C Chain C, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|P Chain P, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|C Chain C, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|P Chain P, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|C Chain C, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|P Chain P, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|C Chain C, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|P Chain P, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|C Chain C, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|P Chain P, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|2Y69|C Chain C, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|P Chain P, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|3ASN|C Chain C, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|P Chain P, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|C Chain C, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|P Chain P, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|2YBB|N Chain N, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2DYS|C Chain C, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|P Chain P, Bovine Heart Cytochrome C Oxidase Modified By Dccd
Length = 261
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 105 AEEYYILAAQQLDG-YGQETFLVKDEHGLETILGVTLKGIIVSGTNSSKFYKWAEIANVL 163
A EYY DG YG F+ HGL I+G T +IV KF+
Sbjct: 178 ASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTF--LIVCFFRQLKFH--------F 227
Query: 164 NHKKNFGIETSNADDHIVNFVF 185
+FG E + H V+ V+
Sbjct: 228 TSNHHFGFEAAAWYWHFVDVVW 249
>pdb|4GLW|A Chain A, Dna Ligase A In Complex With Inhibitor
pdb|4GLW|B Chain B, Dna Ligase A In Complex With Inhibitor
Length = 305
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 201 QHTFYMTYEATEEDNEGEVQNPRSSGGGNGRLFQNIDTALLSSREE---LDEVTSPSMRN 257
+ +F +A +E+ E E NPR++ G R +DTA+++ R L + SPS R+
Sbjct: 169 RASFDQVNQARQENGEPEFANPRNAAAGTLR---QLDTAVVAKRNLATFLYQEASPSTRD 225
>pdb|2YXH|A Chain A, Crystal Structure Of Mazg-Related Protein From Thermotoga
Maritima
pdb|2YXH|B Chain B, Crystal Structure Of Mazg-Related Protein From Thermotoga
Maritima
Length = 116
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 234 QNIDTALLSSREELDEVTSPSMRNVMSNSREELGD 268
Q+I+T L + E++EV +N ++N EE+GD
Sbjct: 22 QSIETLLEALASEIEEVAEAVKKNDLANLEEEIGD 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,052,042
Number of Sequences: 62578
Number of extensions: 464619
Number of successful extensions: 1431
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 38
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)