Query psy9052
Match_columns 356
No_of_seqs 161 out of 925
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:43:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3530|consensus 100.0 1.7E-49 3.8E-54 402.1 17.0 202 1-211 89-297 (616)
2 KOG0792|consensus 100.0 7.4E-49 1.6E-53 416.1 15.9 334 1-350 103-521 (1144)
3 KOG3527|consensus 100.0 1.7E-38 3.8E-43 331.7 11.0 205 1-214 109-319 (975)
4 KOG3529|consensus 100.0 7.9E-30 1.7E-34 265.4 8.9 212 1-213 92-308 (596)
5 PF00373 FERM_M: FERM central 99.9 1.1E-24 2.4E-29 182.8 12.0 116 6-124 1-126 (126)
6 cd00836 FERM_C FERM_C domain. 99.9 2.5E-23 5.5E-28 168.5 10.7 89 118-206 1-92 (92)
7 KOG3531|consensus 99.9 2E-24 4.3E-29 225.6 -3.5 204 1-215 118-326 (1036)
8 smart00295 B41 Band 4.1 homolo 99.8 1.3E-20 2.8E-25 170.2 9.8 123 1-124 83-207 (207)
9 PF09380 FERM_C: FERM C-termin 99.8 3E-20 6.6E-25 149.5 10.2 84 128-211 1-88 (90)
10 KOG0248|consensus 99.7 1.1E-16 2.5E-21 165.2 10.1 188 8-199 688-893 (936)
11 KOG4261|consensus 99.6 3.8E-16 8.1E-21 163.0 3.7 201 2-213 197-405 (1003)
12 KOG4371|consensus 99.6 1.6E-15 3.4E-20 162.2 7.0 207 1-210 595-821 (1332)
13 KOG3552|consensus 98.6 1.3E-07 2.9E-12 101.5 9.5 187 2-192 269-483 (1298)
14 KOG4257|consensus 98.2 1.4E-05 3E-10 84.3 11.8 206 1-210 99-328 (974)
15 KOG3727|consensus 98.1 1.1E-05 2.3E-10 83.5 8.0 184 21-213 451-647 (664)
16 KOG4371|consensus 97.9 2.4E-06 5.2E-11 93.1 0.7 192 1-203 123-334 (1332)
17 cd00435 ACBP Acyl CoA binding 97.5 0.00068 1.5E-08 54.5 8.4 81 19-120 4-85 (85)
18 KOG3531|consensus 97.3 9.4E-05 2E-09 79.6 2.3 159 1-171 257-418 (1036)
19 PF00887 ACBP: Acyl CoA bindin 97.2 0.0015 3.4E-08 52.3 7.1 76 20-116 5-82 (87)
20 PTZ00458 acyl CoA binding prot 96.1 0.04 8.8E-07 44.9 8.4 79 20-119 5-86 (90)
21 KOG3784|consensus 95.6 0.063 1.4E-06 54.2 9.2 104 9-167 205-317 (407)
22 KOG4335|consensus 95.5 0.0059 1.3E-07 63.0 1.6 140 2-145 335-491 (558)
23 COG4281 ACB Acyl-CoA-binding p 95.0 0.093 2E-06 41.5 6.4 79 18-117 4-82 (87)
24 KOG4335|consensus 94.6 0.032 7E-07 57.8 3.7 136 10-145 216-386 (558)
25 KOG0817|consensus 92.2 1.3 2.8E-05 39.1 9.4 84 19-123 8-92 (142)
26 PF02174 IRS: PTB domain (IRS- 86.1 8.4 0.00018 31.6 9.4 65 131-198 21-91 (100)
27 cd00934 PTB Phosphotyrosine-bi 81.9 13 0.00028 30.4 8.9 67 129-197 39-114 (123)
28 cd01203 DOK_PTB Downstream of 80.1 16 0.00035 30.6 8.7 65 131-198 20-90 (104)
29 smart00462 PTB Phosphotyrosine 80.1 22 0.00047 29.7 9.8 73 129-201 41-124 (134)
30 PF14317 YcxB: YcxB-like prote 80.1 2.7 5.9E-05 30.0 3.7 37 138-174 1-37 (62)
31 cd00824 PTBI IRS-like phosphot 78.9 16 0.00034 30.6 8.3 68 131-198 20-94 (104)
32 KOG3527|consensus 77.9 0.55 1.2E-05 51.8 -0.8 194 10-211 470-675 (975)
33 PF10480 ICAP-1_inte_bdg: Beta 77.2 29 0.00063 32.2 10.1 89 105-199 87-188 (200)
34 PF00640 PID: Phosphotyrosine 73.5 38 0.00082 28.3 9.6 59 129-187 49-117 (140)
35 PF14470 bPH_3: Bacterial PH d 72.5 29 0.00062 27.1 8.1 66 130-198 20-94 (96)
36 KOG3878|consensus 71.0 5.4 0.00012 39.9 4.2 68 29-115 48-116 (469)
37 cd01215 Dab Disabled (Dab) Pho 68.0 21 0.00045 31.5 6.8 64 130-193 51-120 (139)
38 PF06115 DUF956: Domain of unk 65.2 12 0.00027 32.0 4.6 59 138-201 29-97 (118)
39 PF10756 bPH_6: Bacterial PH d 62.7 19 0.00042 27.4 5.0 34 136-169 4-37 (73)
40 cd01267 CED6_AIDA1b Phosphotyr 62.3 62 0.0013 27.5 8.7 69 129-197 42-119 (132)
41 cd01273 CED-6 CED-6 Phosphotyr 59.6 46 0.001 28.9 7.5 66 130-195 53-126 (142)
42 cd01274 AIDA-1b AIDA-1b Phosph 58.6 89 0.0019 26.8 8.9 69 129-197 38-114 (127)
43 cd01269 PLX Pollux (PLX) Phosp 55.7 60 0.0013 28.2 7.2 70 127-196 38-119 (129)
44 smart00310 PTBI Phosphotyrosin 55.5 98 0.0021 25.6 8.3 68 132-200 20-91 (98)
45 cd01217 CG12581 CG12581 Phosph 55.4 64 0.0014 28.9 7.5 37 128-164 39-80 (158)
46 cd01202 FRS2 Fibroblast growth 49.0 1E+02 0.0022 25.8 7.4 64 132-198 21-88 (102)
47 KOG3727|consensus 48.3 9.7 0.00021 40.6 1.5 41 12-52 276-316 (664)
48 COG4687 Uncharacterized protei 42.2 45 0.00098 28.5 4.3 58 139-201 30-96 (122)
49 PF14719 PID_2: Phosphotyrosin 41.3 2E+02 0.0044 26.4 8.8 69 130-198 37-115 (182)
50 cd01216 Fe65 Fe65 Phosphotyros 33.6 1.7E+02 0.0036 25.0 6.7 72 130-201 38-118 (123)
51 KOG1431|consensus 32.5 39 0.00085 32.7 2.8 28 284-312 277-304 (315)
52 cd01214 CG8312 CG8312 Phosphot 30.7 3E+02 0.0064 24.2 7.7 69 130-198 40-118 (133)
53 cd01208 X11 X11 Phosphotyrosin 29.5 1.8E+02 0.0039 26.2 6.3 45 129-173 47-94 (156)
54 cd00900 PH-like Pleckstrin hom 25.6 2.6E+02 0.0057 20.2 8.3 67 130-198 18-95 (99)
55 cd01268 Numb Numb Phosphotyros 23.1 3.2E+02 0.007 23.9 6.7 47 130-176 48-100 (138)
56 cd01209 SHC SHC phosphotyrosin 22.8 2.4E+02 0.0052 25.5 5.9 66 130-195 73-146 (160)
No 1
>KOG3530|consensus
Probab=100.00 E-value=1.7e-49 Score=402.08 Aligned_cols=202 Identities=33% Similarity=0.588 Sum_probs=193.0
Q ss_pred CcccCCCCCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCc
Q psy9052 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHN 80 (356)
Q Consensus 1 kFY~~d~~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~ 80 (356)
|||+.||..|.+|.|||+||||||+||++|||+|+.++|++||||++|+|+|||+++.|+.+|+.+.+|+|.+.
T Consensus 89 KfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qt------ 162 (616)
T KOG3530|consen 89 KFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQT------ 162 (616)
T ss_pred EeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEeccccc------
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred chHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEeeccceEE-eCccceeeeecccc
Q psy9052 81 GLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIV-SGTNSSKFYKWAEI 159 (356)
Q Consensus 81 ~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~~~GI~V-~~~~~~~~f~W~~I 159 (356)
|.++.+|++.||+++|++|++||..||+.|+.|++|||++|.|++++|.+..||+++.||.| .+..++..|-|++|
T Consensus 163 ---e~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~kig~f~WpkI 239 (616)
T KOG3530|consen 163 ---EELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKKIGLFFWPKI 239 (616)
T ss_pred ---HHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCceeeEEecchh
Confidence 67899999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cceeccCceEEEEEcCCC------CceEEEEeCCHHHHHHHHHHHHHhhHHhhcCccc
Q psy9052 160 ANVLNHKKNFGIETSNAD------DHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEAT 211 (356)
Q Consensus 160 ~~lsf~~k~F~I~~~~~~------~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~~ 211 (356)
.++.|++++|++++...+ +++..|.+++.++||+|||||+|||+|||+....
T Consensus 240 ~KvdFk~kk~~L~v~edd~~~~~q~hTf~F~~~~~~AcKhLWKCavEhhaFFRl~~p~ 297 (616)
T KOG3530|consen 240 TKVDFKGKKFTLVVSEDDDQGREQEHTFVFRLPSPKACKHLWKCAVEHHAFFRLRCPV 297 (616)
T ss_pred eEeeccCcEEEEEEeeccccCCcccceEEEeCCCcchhHHHHHHhhhccceEeccCCc
Confidence 999999999999987543 2478999999999999999999999999998773
No 2
>KOG0792|consensus
Probab=100.00 E-value=7.4e-49 Score=416.09 Aligned_cols=334 Identities=28% Similarity=0.510 Sum_probs=255.2
Q ss_pred CcccCCCCCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCc
Q psy9052 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHN 80 (356)
Q Consensus 1 kFY~~d~~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~ 80 (356)
|||+++|+.|+|+.||++||||+|.||++||++|+..+|++||+|++||+||||+...+. ++++...++|...... .
T Consensus 103 ~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQae~gdy~~~~s~-~~l~~~~~~p~~~~~~--~ 179 (1144)
T KOG0792|consen 103 KFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGDYNQKQSQ-DGLEYLSVFPQCTLQD--E 179 (1144)
T ss_pred EEEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcchhhhcCC-ccchhccccccccccc--h
Confidence 699999999999999999999999999999999999999999999999999999965543 5555555666655432 2
Q ss_pred chHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEeeccceEEeCc--cceeeeeccc
Q psy9052 81 GLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIVSGT--NSSKFYKWAE 158 (356)
Q Consensus 81 ~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~~~GI~V~~~--~~~~~f~W~~ 158 (356)
..+++++++|.+.|+...|+.+.+||.+||++|++|++||+++|.++|..|..+.|||...||.|.++ .....|+|.+
T Consensus 180 n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~~~~~~~W~d 259 (1144)
T KOG0792|consen 180 NVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGRQSVKFPWGD 259 (1144)
T ss_pred hhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCccccceechhh
Confidence 24578999999999999999999999999999999999999999999999999999999999999443 3557999999
Q ss_pred ccceeccCceEEEEEcCCCC----ceEEEEeCCHHHHHHHHHHHHHhhHHhhcCcccccccCCCC---------------
Q psy9052 159 IANVLNHKKNFGIETSNADD----HIVNFVFPDVESAKYVFRMCVHQHTFYMTYEATEEDNEGEV--------------- 219 (356)
Q Consensus 159 I~~lsf~~k~F~I~~~~~~~----~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~~~~~~~~~~--------------- 219 (356)
|.+++|+++.|-|+..+.++ ..+.|.|.+.+.||+|||+|+++|+||++++....-....+
T Consensus 260 i~~is~~ks~~~le~~~~~~~~r~t~~~F~~~~~~~ak~lwk~cv~~H~Ffr~~~~~~lp~~~~~~~~~~~~~~ss~~~~ 339 (1144)
T KOG0792|consen 260 IIKISFKKSTFGLEQRNKDSESRETLLGFNMLDARTAKYLWKLCVEHHKFFRLKKPCVLPSSSKSPIRRVQSSRSSLPEM 339 (1144)
T ss_pred hhhhhcchhhhhhhhhhccccchhhhheeeecccchhHHHHHHHHHHhhHhhccccccCCcccCCCcccccccccccccc
Confidence 99999999999999987643 34699999999999999999999999999966222110000
Q ss_pred --CCCCCC-CCCCCccccchhHHhhhhhhh-----hhhcCCccccccccCcccccccccccccccccCcCCC--------
Q psy9052 220 --QNPRSS-GGGNGRLFQNIDTALLSSREE-----LDEVTSPSMRNVMSNSREELGDLNERTTSNLDLVDGN-------- 283 (356)
Q Consensus 220 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 283 (356)
..+..+ +.+.+.|+.+. -.+++.+ +.+.++. +-+-+..+.+|++||+++|.+|
T Consensus 340 ~~y~~~~~~~~~~~~hys~~---~~s~qd~l~~~~~~~s~~~--------~~tsld~m~gq~~s~~~~s~~s~~s~~~~~ 408 (1144)
T KOG0792|consen 340 QDYSEPQCKEPSRRDHYSES---HGSGQDDLFTANANSSNST--------SSTSLDNMNGQAQSGHVASLGSKNSLNCMR 408 (1144)
T ss_pred cccccccccchhhccccccc---ccccchhhhcccccccccc--------cchhhhhhhcccccccccccCccccccccc
Confidence 011111 22223444433 1222222 3333333 2134578899999999998661
Q ss_pred --------C--CchhhHhhhCCCCCCCCChHHHHHHHhhhc-----------cccccCCCCCC-----------------
Q psy9052 284 --------H--QDIDKLRSLLPSYRPAPDYETAIQQKYNAS-----------EQQMYSSQPEI----------------- 325 (356)
Q Consensus 284 --------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~----------------- 325 (356)
+ .-+.+..+|+|.|+|||+|+++|+.+|+.. ...-.+|+|++
T Consensus 409 ~~~qa~~~~~n~~~~~~~~m~pdy~pa~~~sp~~~~~yr~~~~~~~~~~i~~~~~q~~s~~~ln~~~~h~~~~~~~~~~~ 488 (1144)
T KOG0792|consen 409 TYLQAVPNSKNFEDSGSDAMRPDYAPAPRYSPQSPLAYRPTVMKQLIRGIPHPDRQSNSKRLLNDGGNHAESLPLEIREE 488 (1144)
T ss_pred cccccCCCCCccccccccccCcccccccccccccccccCchhhHHhhhcCcchhhccccccccccccccccccchhhhhc
Confidence 1 122344599999999999999999999933 11334445544
Q ss_pred CCCCCccccc----------CCCcceeecCCCCcc
Q psy9052 326 HSFPDVTQHY----------GHRNVLHTYSTPDLD 350 (356)
Q Consensus 326 ~~~~~~~~~~----------~~~~~~~~~~~~~~~ 350 (356)
|.||+++++. ++.+. .+|.|..|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~P~--~~p~~~~P 521 (1144)
T KOG0792|consen 489 HGYPGPAVPKGNQSLYVHDVSRSPA--KSPGPRSP 521 (1144)
T ss_pred ccCCCccccccccceecccccCCCC--CCCCCCCC
Confidence 5699999988 22333 66777777
No 3
>KOG3527|consensus
Probab=100.00 E-value=1.7e-38 Score=331.72 Aligned_cols=205 Identities=29% Similarity=0.604 Sum_probs=191.4
Q ss_pred CcccCCCCCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCc
Q psy9052 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHN 80 (356)
Q Consensus 1 kFY~~d~~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~ 80 (356)
||||++|..|.+++|||+++||+|.||++|||||+.-+.+.|++|.+|+|+|||+++.|..+|+..+.+-|.+.
T Consensus 109 KfyPp~Psql~EditrY~lcLq~R~Dil~GrlPcsfvt~allgsy~vq~E~gdYd~ee~~~~y~~df~~aPnqt------ 182 (975)
T KOG3527|consen 109 KFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPCSFVTHALLGSYTVQSELGDYDPEEHGSDYLSDFKFAPNQT------ 182 (975)
T ss_pred eeCCCChHhccccchhheehhhhhhhhhcCccccchhhhhhhhhHhHHhHhccCCHHHcccchhhhhccCcchh------
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEeeccceEEeCc-cceeeeecccc
Q psy9052 81 GLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIVSGT-NSSKFYKWAEI 159 (356)
Q Consensus 81 ~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~~~GI~V~~~-~~~~~f~W~~I 159 (356)
..+++.|...|+..+||++++|+..||..|.+|.+||+..+++||+.|..+.||||.+|+.|..+ -.+..|.|+.|
T Consensus 183 ---~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~d~lrinrfawPKi 259 (975)
T KOG3527|consen 183 ---KELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYRDRLRINRFAWPKI 259 (975)
T ss_pred ---hhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEeechhhhccccCchh
Confidence 34678899999999999999999999999999999999999999999999999999999999544 46899999999
Q ss_pred cceeccCceEEEEEcCCC----CceEEEEeCCHHHHHHHHHHHHHhhHHhhcCcc-cccc
Q psy9052 160 ANVLNHKKNFGIETSNAD----DHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEA-TEED 214 (356)
Q Consensus 160 ~~lsf~~k~F~I~~~~~~----~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~-~~~~ 214 (356)
.+++|++..|.|++++.. +.++.|+++++++||+||+.|+|||+|||+.-+ ..+|
T Consensus 260 lKisykR~~FyiKirPge~eq~EstigFklpnhraakrlwk~cvEHhtffrl~~Pe~~pk 319 (975)
T KOG3527|consen 260 LKISYKRSNFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFRLVSPEPPPK 319 (975)
T ss_pred hhhccceeeeEEEecCCccccccccccccccchhhHHhhhHhhhhccceeeeccCCCCcc
Confidence 999999999999998642 357999999999999999999999999999855 4444
No 4
>KOG3529|consensus
Probab=99.96 E-value=7.9e-30 Score=265.37 Aligned_cols=212 Identities=25% Similarity=0.474 Sum_probs=191.9
Q ss_pred CcccCCCC-CCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCC
Q psy9052 1 MYYVSGIS-LITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGH 79 (356)
Q Consensus 1 kFY~~d~~-~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~ 79 (356)
|||++++. .|.+++|.+|||||+|..|+.|.+.|+.|+.+.||||++|+.+|||+.+.|..+++.....||..++...+
T Consensus 92 kfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~ 171 (596)
T KOG3529|consen 92 KFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHK 171 (596)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhhhhhccccCcccchhhhhhcc
Confidence 79999997 78899999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred cchHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEeeccceEE-eCc---cceeeee
Q psy9052 80 NGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIV-SGT---NSSKFYK 155 (356)
Q Consensus 80 ~~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~~~GI~V-~~~---~~~~~f~ 155 (356)
. ....|+..|...|.+++||+.++|+++||++++.||+||+.+|+++++.|..+||||+..|+.+ +.. .+...|+
T Consensus 172 ~-s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~~~~k~~P~~~f~ 250 (596)
T KOG3529|consen 172 M-TPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYDESDKLTPKIGFP 250 (596)
T ss_pred c-cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccccccCCCCCCCCC
Confidence 3 2467999999999999999999999999999999999999999999999999999999999999 432 3568999
Q ss_pred cccccceeccCceEEEEEcCCCCceEEEEeCCHHHHHHHHHHHHHhhHHhhcCccccc
Q psy9052 156 WAEIANVLNHKKNFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEATEE 213 (356)
Q Consensus 156 W~~I~~lsf~~k~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~~~~ 213 (356)
|..|.+++|.+++|+|++.+.......|.-+.....+.++.+|.+.|..|+.++..+.
T Consensus 251 w~eirnisf~~kkf~~k~id~~~~~f~~~~~~~~~~~~~l~~~~~~~~l~~rr~~~~t 308 (596)
T KOG3529|consen 251 WSEIRNISFNDKKFHIKPIDKKASDFSFYAPRLRINKRILDLCMGNHELYMRRRKPDT 308 (596)
T ss_pred ccccCCCCCCcccccCCCCCcccCcccccccccccchhhhhhhhccchhhhhcccccc
Confidence 9999999999999999987542224566666667999999999999999999987554
No 5
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.92 E-value=1.1e-24 Score=182.82 Aligned_cols=116 Identities=30% Similarity=0.562 Sum_probs=98.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCC-Cccchhhhhhh-------hccCC--chhh
Q psy9052 6 GISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYN-SERHTLEYLKD-------FALFP--KDLV 75 (356)
Q Consensus 6 d~~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~-~~~h~~~yl~~-------~~~lP--~~i~ 75 (356)
||..+.|+.+++++|+|+|+||++|+++|+.++|++||||++|+++||++ ...+..+++.. ..|+| ..++
T Consensus 1 ~p~~~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~ 80 (126)
T PF00373_consen 1 DPLHIDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLI 80 (126)
T ss_dssp SGGGTTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHH
Confidence 57779999999999999999999999999999999999999999999999 45555555432 24899 7766
Q ss_pred hcCCcchHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeE
Q psy9052 76 ENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETF 124 (356)
Q Consensus 76 ~~~~~~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F 124 (356)
.... .+.|...|.+.|++++|+++.+|+..||++|++||+||+++|
T Consensus 81 ~~~~---~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 81 KKMK---QKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp CCST---HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred hhhh---HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 5433 367999999999999999999999999999999999999998
No 6
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=99.90 E-value=2.5e-23 Score=168.46 Aligned_cols=89 Identities=31% Similarity=0.659 Sum_probs=83.1
Q ss_pred CCCceeEEeecCCCCeEEEEeeccceEE-eCccceeeeecccccceeccCceEEEEEcCC--CCceEEEEeCCHHHHHHH
Q psy9052 118 GYGQETFLVKDEHGLETILGVTLKGIIV-SGTNSSKFYKWAEIANVLNHKKNFGIETSNA--DDHIVNFVFPDVESAKYV 194 (356)
Q Consensus 118 ~YGv~~F~Vkd~~~~~l~LGV~~~GI~V-~~~~~~~~f~W~~I~~lsf~~k~F~I~~~~~--~~~~~~F~~~s~~~AK~L 194 (356)
+||+++|+|+|+.|.+++|||++.||.| .++.++..|+|++|.+++|++|+|.|++.+. .+..+.|++++.++||+|
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~~~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~f~~~s~~~~k~l 80 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTPINEFPWPEIRKISFKRKKFTLKVRDKDGQEITLSFQTPSHRACKYL 80 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCEEEEEEcccceEEEEcCCEEEEEEecCcCceeeEEEECCCHHHHHHH
Confidence 6999999999999999999999999999 5555889999999999999999999999876 246789999999999999
Q ss_pred HHHHHHhhHHhh
Q psy9052 195 FRMCVHQHTFYM 206 (356)
Q Consensus 195 wklcie~H~Ffr 206 (356)
|++|+++|+|||
T Consensus 81 wk~~ve~H~Ffr 92 (92)
T cd00836 81 WKLCVEQHAFFR 92 (92)
T ss_pred HHHHHhhhhhcC
Confidence 999999999997
No 7
>KOG3531|consensus
Probab=99.87 E-value=2e-24 Score=225.62 Aligned_cols=204 Identities=25% Similarity=0.457 Sum_probs=188.2
Q ss_pred CcccCCCCCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCc
Q psy9052 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHN 80 (356)
Q Consensus 1 kFY~~d~~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~ 80 (356)
|||++|+-.+.++.||+++-+|++.|+..|++.|+..+|..|+++++|.+.|||+ +.....+++..+|+|.++
T Consensus 118 kf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~-~~~d~~~l~~~~~~p~q~------ 190 (1036)
T KOG3531|consen 118 KFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFD-EYLDREHLAHTRYLPNQD------ 190 (1036)
T ss_pred cccCCCccccchhHHHHhhhhccccccccCCccCCCchhhhhhcccccccCCchh-ccccceeeeeeecCchHH------
Confidence 6999999999999999999999999999999999999999999999999999994 445667888899999873
Q ss_pred chHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEeeccceEE-eCccceeeeecccc
Q psy9052 81 GLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIV-SGTNSSKFYKWAEI 159 (356)
Q Consensus 81 ~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~~~GI~V-~~~~~~~~f~W~~I 159 (356)
.+.++|...|+...|++|+++..+-|..|+++++||+.++.++|-+|..+-|+|..-||.| .+-+++..|.|..|
T Consensus 191 ----~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAki 266 (1036)
T KOG3531|consen 191 ----ELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKI 266 (1036)
T ss_pred ----HHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999 88888999999999
Q ss_pred cceeccCceEEEEEcCCC----CceEEEEeCCHHHHHHHHHHHHHhhHHhhcCccccccc
Q psy9052 160 ANVLNHKKNFGIETSNAD----DHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEATEEDN 215 (356)
Q Consensus 160 ~~lsf~~k~F~I~~~~~~----~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~~~~~~ 215 (356)
.+++|+.+.|-|+..+.. +.++.|.+.+...||..|+-|+++|.||++....+++-
T Consensus 267 rklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk~cve~h~ffr~~~~~~~k~ 326 (1036)
T KOG3531|consen 267 RKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWKICVEHHAFFRLVEEPKPKP 326 (1036)
T ss_pred HHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHhccccccchhhhhcccCCCC
Confidence 999999999999988652 24678888999999999999999999999998877744
No 8
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.83 E-value=1.3e-20 Score=170.21 Aligned_cols=123 Identities=33% Similarity=0.586 Sum_probs=105.0
Q ss_pred CcccCCCCCC-CchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccc-hhhhhhhhccCCchhhhcC
Q psy9052 1 MYYVSGISLI-TDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERH-TLEYLKDFALFPKDLVENG 78 (356)
Q Consensus 1 kFY~~d~~~L-~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h-~~~yl~~~~~lP~~i~~~~ 78 (356)
|||++++..+ .|+.+..++|.|++.||++|++||+.++++.||||.+|+++||++...+ ...+.....++|+.+....
T Consensus 83 r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~ 162 (207)
T smart00295 83 KFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSE 162 (207)
T ss_pred EEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhc
Confidence 5788876544 4555566999999999999999999999999999999999999987665 3455667789999987653
Q ss_pred CcchHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeE
Q psy9052 79 HNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETF 124 (356)
Q Consensus 79 ~~~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F 124 (356)
+ ...+.|.++|.+.|+++.|+++.+|+..||++|++||+||+++|
T Consensus 163 ~-~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 163 K-RTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred c-ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 2 11367899999999999999999999999999999999999987
No 9
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=99.83 E-value=3e-20 Score=149.49 Aligned_cols=84 Identities=33% Similarity=0.673 Sum_probs=74.8
Q ss_pred cCCCCeEEEEeeccceEE-eCccce--eeeecccccceeccCceEEEEEcC-CCCceEEEEeCCHHHHHHHHHHHHHhhH
Q psy9052 128 DEHGLETILGVTLKGIIV-SGTNSS--KFYKWAEIANVLNHKKNFGIETSN-ADDHIVNFVFPDVESAKYVFRMCVHQHT 203 (356)
Q Consensus 128 d~~~~~l~LGV~~~GI~V-~~~~~~--~~f~W~~I~~lsf~~k~F~I~~~~-~~~~~~~F~~~s~~~AK~Lwklcie~H~ 203 (356)
|+.|.+++|||+++||.| ..+... ..|+|.+|.+++|++|+|.|++.+ ..+..+.|++++++.||+||++|++||+
T Consensus 1 D~~~~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~~~k~F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H~ 80 (90)
T PF09380_consen 1 DKNGSPLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSFKKKKFTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQHT 80 (90)
T ss_dssp ETTSBEEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEEETTEEEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEcCCEeEEEeCCCcccceeeehhheeEEEecccEEEEEEeecccceEEEEEECCHHHHHHHHHHHHHHHH
Confidence 578899999999999999 555555 999999999999999999999986 4457899999999999999999999999
Q ss_pred HhhcCccc
Q psy9052 204 FYMTYEAT 211 (356)
Q Consensus 204 Ffr~~~~~ 211 (356)
||+++++.
T Consensus 81 Ff~~~~~~ 88 (90)
T PF09380_consen 81 FFRLRRPP 88 (90)
T ss_dssp HHHHHTS-
T ss_pred HhcccCCC
Confidence 99998874
No 10
>KOG0248|consensus
Probab=99.68 E-value=1.1e-16 Score=165.23 Aligned_cols=188 Identities=15% Similarity=0.270 Sum_probs=159.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhh--hhccCCchhhhcCCcchHHH
Q psy9052 8 SLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLK--DFALFPKDLVENGHNGLLER 85 (356)
Q Consensus 8 ~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~--~~~~lP~~i~~~~~~~~le~ 85 (356)
..-.++..|-|+|-|.-+.|..||+|.+.+.+..+|||.+|.++||-.. .....-|+ ..+|.|..+...... |.
T Consensus 688 ~~~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~-~~k~q~l~qv~~rFyP~ryrdga~~---eq 763 (936)
T KOG0248|consen 688 ALTETPIERQFLVWRASEEIVNGRIPLSNQLCESLAALYAQMVFGDANQ-SLSDQQFEFISQRFYPSKMLDVACI---KS 763 (936)
T ss_pred hcCCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHHHHHHhhccccc-cchHHHHHHHHHHhChhhhhccCCH---HH
Confidence 3445788999999999999999999999999999999999999999763 23333332 368999998876554 45
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeec-----CCCCeEEEEeeccceEE-eCc--cceeeeecc
Q psy9052 86 LTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKD-----EHGLETILGVTLKGIIV-SGT--NSSKFYKWA 157 (356)
Q Consensus 86 ~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd-----~~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~ 157 (356)
+.+.|...|..|+|+|+.|+...||.+|++||+||..+|.++. +.+.-+||+|+.+||.+ +.+ +.+.+|+|+
T Consensus 764 LR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N~M~vi~tYpYs 843 (936)
T KOG0248|consen 764 LRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRNHMDVIRTYPYS 843 (936)
T ss_pred HHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceeccccceeEEEEeecc
Confidence 6689999999999999999999999999999999999999875 35567999999999999 554 578999999
Q ss_pred cccceeccCceEEEEEcCCC--------CceEEEEeCCHHHHHHHHHHHH
Q psy9052 158 EIANVLNHKKNFGIETSNAD--------DHIVNFVFPDVESAKYVFRMCV 199 (356)
Q Consensus 158 ~I~~lsf~~k~F~I~~~~~~--------~~~~~F~~~s~~~AK~Lwklci 199 (356)
.+..++.-...|++++.+.. .+++.|.|.-++.+..-+-++.
T Consensus 844 Sl~TFGG~qDDFMlVI~~tp~K~~~~~~~EKL~F~MAkPKI~E~Tl~~AS 893 (936)
T KOG0248|consen 844 SLSTFGGFQDDFMLVIIRTPGKHPDEAPKEKLTFSMAKPKIEELTLHLAS 893 (936)
T ss_pred ccccccCcccceEEEEecCCCCCCCccchhhhhhhhccchHHHHHHHHHH
Confidence 99999999999999997642 2578999999998888777764
No 11
>KOG4261|consensus
Probab=99.60 E-value=3.8e-16 Score=163.05 Aligned_cols=201 Identities=18% Similarity=0.309 Sum_probs=166.9
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCcc
Q psy9052 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHNG 81 (356)
Q Consensus 2 FY~~d~~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~~ 81 (356)
||-++-.--.|++-..|||.|.|.+|+.|.+|++.++|+++|++..+..||++..++|. .++....++|+...+..
T Consensus 197 f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq~g~~~~~k~k-~~ld~kd~lpk~y~k~k--- 272 (1003)
T KOG4261|consen 197 FFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQFGPHNEDKHK-GFLDLKDFLPKEYVKQK--- 272 (1003)
T ss_pred hhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccccCCchhhccc-cchhccccChHHHhccc---
Confidence 34444445678999999999999999999999999999999999999999999999998 89999999999988753
Q ss_pred hHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecC-----CCCeEEEEeeccceEE-eCc--cceee
Q psy9052 82 LLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDE-----HGLETILGVTLKGIIV-SGT--NSSKF 153 (356)
Q Consensus 82 ~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~-----~~~~l~LGV~~~GI~V-~~~--~~~~~ 153 (356)
. +.+|...|+.+.||+..+|+..|.+.|+.|++||++||-||.+ ...|.+|||+...+.- +.. ..+..
T Consensus 273 ---~-ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~svmr~de~tk~il~e 348 (1003)
T KOG4261|consen 273 ---G-EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKESVMRVDEKTKEILQE 348 (1003)
T ss_pred ---c-chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHHhhhhcchhhhhHhhh
Confidence 2 6889999999999999999999999999999999999999875 4578999999987776 433 35688
Q ss_pred eecccccceeccCceEEEEEcCCCCceEEEEeCCHHHHHHHHHHHHHhhHHhhcCccccc
Q psy9052 154 YKWAEIANVLNHKKNFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEATEE 213 (356)
Q Consensus 154 f~W~~I~~lsf~~k~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~~~~ 213 (356)
||...|..|.-+-+.|++-+... .-.|+-.......-+..++-.+......++....
T Consensus 349 wpl~~V~rw~~s~~~ftldfgdy---q~~yysvqtT~~e~i~Qli~gyidiilkkk~skd 405 (1003)
T KOG4261|consen 349 WPLTTVRRWAASPKSFTLDFGDY---QDGYYSVQTTEGEQIAQLIAGYIDIILKKKQTKD 405 (1003)
T ss_pred cchhHHHHhccCcceeccccccc---cccccceeeccchHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999988643 2234444444566677777777777766655433
No 12
>KOG4371|consensus
Probab=99.58 E-value=1.6e-15 Score=162.16 Aligned_cols=207 Identities=20% Similarity=0.322 Sum_probs=176.8
Q ss_pred CcccCCCCCCCchhH---HHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhc
Q psy9052 1 MYYVSGISLITDEMT---RYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVEN 77 (356)
Q Consensus 1 kFY~~d~~~L~de~T---R~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~ 77 (356)
+||+..-..+.++++ |.-+|+|++.++++.+..-..+-+.+||++++|+++|+..++.+..+|+...+|+|.++...
T Consensus 595 ~~y~s~l~~is~~~akltrse~Y~~~q~qvLeeq~V~~~da~f~laaFalqadsGNr~~n~~~gdysdP~hY~ps~yss~ 674 (1332)
T KOG4371|consen 595 KFYPSILDFISTDVAKLTRSELYLQCQRQVLEEQIVPKRDAAFELAAFALQADSGNRPPNPVIGDYSDPQHYLPSKYSSF 674 (1332)
T ss_pred EeccccCcchhhhhhhhhhhHHHHhhhHHHHhhcccccchhhhhHHhhhhhhhcCCCCCCccccccCChhhhcccceecc
Confidence 478877777777777 99999999999999999888889999999999999999999999999999999999998764
Q ss_pred CCcchHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEe---e--------cCCCCeEEEEeeccceEE-
Q psy9052 78 GHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLV---K--------DEHGLETILGVTLKGIIV- 145 (356)
Q Consensus 78 ~~~~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~V---k--------d~~~~~l~LGV~~~GI~V- 145 (356)
.+. ..+...+...|..--|.+..+|...|+++++..+.|+++++++ + ...+.+.|+|+.++||.|
T Consensus 675 e~q---~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~ 751 (1332)
T KOG4371|consen 675 EDQ---SLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIY 751 (1332)
T ss_pred cch---hhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCccccccccceecc
Confidence 332 1233444477777788999999999999999999999999876 2 124679999999999999
Q ss_pred eC----ccceeeeecccccceeccCceEEEEEcCCC-CceEEEEeCCHHHHHHHHHHHHHhhHHhhcCcc
Q psy9052 146 SG----TNSSKFYKWAEIANVLNHKKNFGIETSNAD-DHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEA 210 (356)
Q Consensus 146 ~~----~~~~~~f~W~~I~~lsf~~k~F~I~~~~~~-~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~ 210 (356)
.. ..++..|+|..|..+.|.++.|.|...+.. .....|++..+..+.++++++...|.||+.+++
T Consensus 752 ~p~~~a~~~~a~fPpa~v~~lqFd~k~f~Is~~g~p~~~i~~~yt~hh~~S~~~L~~~~~thR~ym~~~q 821 (1332)
T KOG4371|consen 752 EPQGGAREVIAEFPPAQVQTLQFDKKRFVISAVGAPDEQIETFYTDHHSKSSYFLRFAASTHRWYMKMRQ 821 (1332)
T ss_pred ccCCCCccccCCCCCCCCCceeecCCCceeecCCCCCcceEEeeccCCcchhHHHHHHHHhhHHHhhchh
Confidence 22 246789999999999999999999987653 356789999999999999999999999999975
No 13
>KOG3552|consensus
Probab=98.61 E-value=1.3e-07 Score=101.51 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=123.2
Q ss_pred cccCCCC-C-CCchhHHHHHHHHHHHHHHcCcccC--CHHHHHHHHHHHHH-hhhCCCCCccchhhhhhh----hccCCc
Q psy9052 2 YYVSGIS-L-ITDEMTRYHCFLQLKNDIIEGRIQC--NLDDAVVLASYCMQ-AEFGNYNSERHTLEYLKD----FALFPK 72 (356)
Q Consensus 2 FY~~d~~-~-L~de~TR~LlYLQlr~dIl~Grlpc--s~e~av~LAAL~lQ-ae~GDy~~~~h~~~yl~~----~~~lP~ 72 (356)
|-|.|+. + -.|+++..++|+|...||...|+-. -.+.|..||||.|+ +-+-+--+.+-+..|+.. ++|+|.
T Consensus 269 FVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elALRLAALhm~~~~~a~~q~qKislKyIEkewGlE~Fvp~ 348 (1298)
T KOG3552|consen 269 FVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELALRLAALHMHQHALANNQAQKISLKYIEKEWGLERFVPV 348 (1298)
T ss_pred eccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhchhhcccH
Confidence 4456664 3 3599999999999999999999975 47999999999994 556554444667778764 689999
Q ss_pred hhhhcCCcchHHHHHHHHHHHhhhc--------cCCCHHHHHHHHHHHHhcCCCCCceeEEeecCC---CCeEEEEeecc
Q psy9052 73 DLVENGHNGLLERLTDAVIQQHSAL--------VGLSQGTAEEYYILAAQQLDGYGQETFLVKDEH---GLETILGVTLK 141 (356)
Q Consensus 73 ~i~~~~~~~~le~~~~~I~~~Hk~L--------~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~---~~~l~LGV~~~ 141 (356)
.++.+.+.. + +++.+.+|-++ +-++..+|+..||++...|+.||-..|.+.-.. ...+.|=|+++
T Consensus 349 sll~~MK~K---~-ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~~LLVgpr 424 (1298)
T KOG3552|consen 349 SLLEGMKRK---E-IKKAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESERVLLVGPR 424 (1298)
T ss_pred HHHhhhhHH---H-HHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeEEEEeccc
Confidence 998866532 2 33344444433 225678999999999999999999999875433 36677777775
Q ss_pred -ceEE--eCc-ccee-eeecccccce---eccCceEEEEEcCCCCceEEEEeCCHHHHH
Q psy9052 142 -GIIV--SGT-NSSK-FYKWAEIANV---LNHKKNFGIETSNADDHIVNFVFPDVESAK 192 (356)
Q Consensus 142 -GI~V--~~~-~~~~-~f~W~~I~~l---sf~~k~F~I~~~~~~~~~~~F~~~s~~~AK 192 (356)
||.. +.+ +... .=.+.+|..+ .=....-.|.+--.+.+.++|.|.+...|.
T Consensus 425 yGiSqVinak~nv~~~la~f~~~trVe~~~Ede~~~~V~i~mldvk~vtllmEs~da~~ 483 (1298)
T KOG3552|consen 425 YGISQVINAKNNVPQPLAAFEDFTRVEVNREDEVTCSVSIFMLDVKAVTLLMESRDACE 483 (1298)
T ss_pred cchhHhhhcccccchhHHHhhhcceeEeeccccceEEEEEEEeccceeEEEeeccccch
Confidence 7765 332 2111 0112233322 222223333332234468999999875554
No 14
>KOG4257|consensus
Probab=98.18 E-value=1.4e-05 Score=84.32 Aligned_cols=206 Identities=16% Similarity=0.182 Sum_probs=153.3
Q ss_pred CcccCCCCC--CCchhHHHHHHHHHHHHHHcCcc-cCCHHHHHHHHHHHHHhhhCCCCCcc----chhhhhhh----hcc
Q psy9052 1 MYYVSGISL--ITDEMTRYHCFLQLKNDIIEGRI-QCNLDDAVVLASYCMQAEFGNYNSER----HTLEYLKD----FAL 69 (356)
Q Consensus 1 kFY~~d~~~--L~de~TR~LlYLQlr~dIl~Grl-pcs~e~av~LAAL~lQae~GDy~~~~----h~~~yl~~----~~~ 69 (356)
||-|.++.. -.|..|..+||.|+++|.....- .++.+.|++||+|-+--.|-+.+-.. +-.+++.. ..|
T Consensus 99 Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~~~na~~kksh~e~lekevglksf 178 (974)
T KOG4257|consen 99 RYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEHQHNAPGKKSHLEDLEKEVGLKSF 178 (974)
T ss_pred eeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCcccCCCccccHHHHHHHhhHHhh
Confidence 455666643 34778889999999999996543 57899999999999999888754322 22345554 479
Q ss_pred CCchhhhcCCcchHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeec--CCCCeEEEEeecc-ceEE-
Q psy9052 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKD--EHGLETILGVTLK-GIIV- 145 (356)
Q Consensus 70 lP~~i~~~~~~~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd--~~~~~l~LGV~~~-GI~V- 145 (356)
||+.+...... ..+...|.+-+++...+.+.|....|+.+....-.|.++.|.+.- ..+..+.|.|+++ ||.-
T Consensus 179 fPksl~~~~Kp---k~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~WnisveLvvGPh~Gisy~ 255 (974)
T KOG4257|consen 179 FPKSLHNPFKP---KHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWNISVELVVGPHTGISYL 255 (974)
T ss_pred ChHhhhcccCh---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccceeEEEEecCcccceec
Confidence 99998876443 456667777789999999999999999999988889999998864 3568899999999 9998
Q ss_pred -eCc-cceeeeecccccceecc-------CceEEEEEcCCCCceEEEEeCCHHHHHHHHHHHHHhhHHhhcCcc
Q psy9052 146 -SGT-NSSKFYKWAEIANVLNH-------KKNFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEA 210 (356)
Q Consensus 146 -~~~-~~~~~f~W~~I~~lsf~-------~k~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~ 210 (356)
+.+ .+...-.+..|.+|... +-...|.+.+.. +.+..++++-..|..+..+.-++...+.....
T Consensus 256 t~~~~~~t~laefkqi~sI~~c~~~eek~k~~lQlkisga~-e~l~It~ssl~~aesmAdLiDGYcrL~n~~~~ 328 (974)
T KOG4257|consen 256 TNERCDPTRLAEFKQIASITICKMEEEKEKTLLQLKISGAP-EPLLITLSSLELAESMADLIDGYCRLYNQRDS 328 (974)
T ss_pred cCCCCChHHHHhhhhhheeEEeecccccccceeeeeccCCC-CCeEEecChhhHHHHHHHHHHHHHHHHcCCCc
Confidence 222 23444556677766511 113344444332 57889999999999999999999888877654
No 15
>KOG3727|consensus
Probab=98.06 E-value=1.1e-05 Score=83.52 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=129.7
Q ss_pred HHHHHHHHcCcccCC----HHHHHHHHHHHHHhhhCC-CCC--ccchhhhhhhhccCCchhhhcCCcchHHHHHHHHHHH
Q psy9052 21 LQLKNDIIEGRIQCN----LDDAVVLASYCMQAEFGN-YNS--ERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQ 93 (356)
Q Consensus 21 LQlr~dIl~Grlpcs----~e~av~LAAL~lQae~GD-y~~--~~h~~~yl~~~~~lP~~i~~~~~~~~le~~~~~I~~~ 93 (356)
.=+.+--..|+-..+ .|+-.-|+-|.||---+. ... +... .-+....|+...+++.... +.+.++|+++
T Consensus 451 MAaCrLASKGktMADSSY~sEV~sIlsfL~MQ~~n~g~~q~~~~~~~-~d~np~~~vSPr~~rk~ks---KQ~~~RILEA 526 (664)
T KOG3727|consen 451 MAACRLASKGKTMADSSYQSEVQSILSFLKMQRPNSGSRQAAPVKLP-RDVNPECYVSPRYVRKLKS---KQITQRILEA 526 (664)
T ss_pred HHHhhHhhcCCccccccccHHHHHHHHHHHhcCCCCCCCcCCcccCc-CCCCchhhcCHHHHHHHhh---HHHHHHHHHH
Confidence 334555556777653 677777888888865442 111 1111 1122334444444443221 3478999999
Q ss_pred hhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCC-CCeEEEEeeccceEE-eC--ccceeeeecccccceecc--Cc
Q psy9052 94 HSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEH-GLETILGVTLKGIIV-SG--TNSSKFYKWAEIANVLNH--KK 167 (356)
Q Consensus 94 Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~-~~~l~LGV~~~GI~V-~~--~~~~~~f~W~~I~~lsf~--~k 167 (356)
|...+-|+-.||++.||+.-++||.||+++|-|+-+. .+.=+|||..+-|+- +- ...+.+|++.+++.|.-. =|
T Consensus 527 HqNVaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLirmDlatGd~iKTWRfsnMKqWNVNWeir 606 (664)
T KOG3727|consen 527 HQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLIRMDLATGDHIKTWRFSNMKQWNVNWEIR 606 (664)
T ss_pred hhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhheeeeecccCCceeeeeecchhhhcccceee
Confidence 9999999999999999999999999999999998653 345689999988887 43 346789999999988554 57
Q ss_pred eEEEEEcCCCCceEEEEeCCHHHHHHHHHHHHHhhHHhhcCccccc
Q psy9052 168 NFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEATEE 213 (356)
Q Consensus 168 ~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~~~~ 213 (356)
..+|++..+ ..+.|.|-+ ..||-+...+-++ .|+.+|+.+.
T Consensus 607 ~v~IeF~de--v~iaFsc~S-ADCKVVHEfIGGY--IFLStRsKd~ 647 (664)
T KOG3727|consen 607 QVMIEFEDE--VNIAFSCLS-ADCKVVHEFIGGY--IFLSTRSKDQ 647 (664)
T ss_pred EEEEEeccc--ceEEEEeec-ccchhhhhhccce--EEEEecchhc
Confidence 888888633 458999988 4888888887777 3777766443
No 16
>KOG4371|consensus
Probab=97.93 E-value=2.4e-06 Score=93.08 Aligned_cols=192 Identities=13% Similarity=-0.070 Sum_probs=122.0
Q ss_pred CcccCCCCCCCchhHHHHHHHHHHHHHHcCcc--cCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcC
Q psy9052 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRI--QCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENG 78 (356)
Q Consensus 1 kFY~~d~~~L~de~TR~LlYLQlr~dIl~Grl--pcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~ 78 (356)
+||++++-.|.++..|+.||||++.|++.--. +++++.++.+|+|++|++|||-.+ ++.+-..+.|.+.....
T Consensus 123 ~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr~~~e~a~~~~a~lalq~d~g~~~~-----g~s~~~qy~g~~~~~~p 197 (1332)
T KOG4371|consen 123 SGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPRPAPEKAAEEYARLALQNDFGEEEE-----GESQFGQYGGTLSGRDP 197 (1332)
T ss_pred EEeecCceeccCCCCccchhhhhhhhhhccccCCcchHHHHHHHHhhhhcCccCcCCc-----ccccccccCcceeccCc
Confidence 48999999999999999999999999997333 678899999999999999999543 44555567777655432
Q ss_pred C--------cchHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEee----ccceEEe
Q psy9052 79 H--------NGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVT----LKGIIVS 146 (356)
Q Consensus 79 ~--------~~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~----~~GI~V~ 146 (356)
- ...+..+...+-+.-..+-.....++...=|-+-..|++-|...+..+| .+++|++ .+|+.-+
T Consensus 198 ~~~g~g~s~~n~l~~~~~~~nE~~~~~~~~~~~e~~r~~i~l~~~l~~~~~~~~~~~d----~a~~g~~~~~~a~~~~~c 273 (1332)
T KOG4371|consen 198 FDEGSGNSNENQLREKKLHKNEQLAHRLSSSSEEIVRASIHLDEPLVMAQIPEEKPKD----KAIPGFDNAYDADFDNSC 273 (1332)
T ss_pred cccccccccccccHHHHHhhhHHHHHHHHHHHHHhcccccCCCCCccccCCccccCcc----ccccccCchhhhhhhcCC
Confidence 1 1112222222222111111112223333333333345555555555555 3677888 8888872
Q ss_pred C-----c-cceeeeecccccceeccCceEEEEEcCCCCceEEEEeCCHHHHHHHHHHHHHhhH
Q psy9052 147 G-----T-NSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQHT 203 (356)
Q Consensus 147 ~-----~-~~~~~f~W~~I~~lsf~~k~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklcie~H~ 203 (356)
. . .......|-+..+..+..++-++.-.+. .+..-.--+.+.++|+...|+.-|.
T Consensus 274 ~~~h~g~~~~e~~Ls~~~~A~~~~~~~~a~~~~s~~--sk~e~~~~~a~~~~y~~~~~~~~~e 334 (1332)
T KOG4371|consen 274 PLHHYGAVHLETGLSPLEEAQRALRANRARHKPSNV--SKAEEAKLAARQRYYNASDIRREEE 334 (1332)
T ss_pred CcccccchhhhccccHHHHHHHHHHhhhceeccccc--chhhhhhhhHHHHHHhHHHhhhcch
Confidence 2 1 2457889999999999998888765432 2222333455677888888866554
No 17
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=97.49 E-value=0.00068 Score=54.54 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCcchHHHHHHHHHHHhhhcc
Q psy9052 19 CFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALV 98 (356)
Q Consensus 19 lYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~~~le~~~~~I~~~Hk~L~ 98 (356)
-|..+...|.+-....+.++-.+|=||--||..||++...+ +.+. -....--..|+++.
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P--~~~d-------------------~~~~~K~~AW~~l~ 62 (85)
T cd00435 4 EFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERP--GMFD-------------------LKGRAKWDAWNSLK 62 (85)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCC--Cccc-------------------HhhHHHHHHHHHcC
Confidence 36677777777777789999999999999999999974321 1111 01133346899999
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCC
Q psy9052 99 GLSQGTAEEYYILAAQQL-DGYG 120 (356)
Q Consensus 99 GmS~~eAe~~FL~~a~~L-p~YG 120 (356)
|||+++|+..|++++.++ |.||
T Consensus 63 ~ms~~eA~~~YV~~~~~l~~~~~ 85 (85)
T cd00435 63 GMSKEDAMKAYIAKVEELIAKYA 85 (85)
T ss_pred CCCHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999874 7776
No 18
>KOG3531|consensus
Probab=97.34 E-value=9.4e-05 Score=79.61 Aligned_cols=159 Identities=6% Similarity=-0.169 Sum_probs=131.3
Q ss_pred CcccCCCCCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhh---hccCCchhhhc
Q psy9052 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKD---FALFPKDLVEN 77 (356)
Q Consensus 1 kFY~~d~~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~---~~~lP~~i~~~ 77 (356)
|||..|+..|....+|+++|||.+++...|-+.|+.|.++..+.+..|+-.|++... +|++. ..+.|+...-+
T Consensus 257 kinTf~wAkirklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk~cve~h----~ffr~~~~~~~k~k~~~~S 332 (1036)
T KOG3531|consen 257 KINTFNWAKIRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWKICVEHH----AFFRLVEEPKPKPKTVFFS 332 (1036)
T ss_pred eccCCCHHHHHHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHhcccccc----chhhhhcccCCCCCceeec
Confidence 678888889999999999999999999999999999999999999999999998764 34442 22344433322
Q ss_pred CCcchHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEeeccceEEeCccceeeeecc
Q psy9052 78 GHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIVSGTNSSKFYKWA 157 (356)
Q Consensus 78 ~~~~~le~~~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~~~GI~V~~~~~~~~f~W~ 157 (356)
.+ ..+...|+..+|+.+.+++..-++.+.+.+.||+..+..++-.+.+..+..-+.|+....-.....+.|-
T Consensus 333 ~g--------ssfrysgrtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd~~~~~~~~sl~~~n~~~~~ 404 (1036)
T KOG3531|consen 333 KG--------SSFRYSGRTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSDVPEQHRNGSLYEANGTDSY 404 (1036)
T ss_pred cc--------chhhhcCcchhccchhhhhcccccchhhcccccccccchhhccCCchhhhhccccccccceeecccccCc
Confidence 22 4566678999999999999999999999999999999998888888889999999888212345789999
Q ss_pred cccceeccCceEEE
Q psy9052 158 EIANVLNHKKNFGI 171 (356)
Q Consensus 158 ~I~~lsf~~k~F~I 171 (356)
.+.++.+++.-+..
T Consensus 405 ~~~~~~~ss~P~l~ 418 (1036)
T KOG3531|consen 405 NKHQNVHSSEPHIA 418 (1036)
T ss_pred ccccccccCCceec
Confidence 99999999887666
No 19
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=97.17 E-value=0.0015 Score=52.30 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCcc--cCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCcchHHHHHHHHHHHhhhc
Q psy9052 20 FLQLKNDIIEGRI--QCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSAL 97 (356)
Q Consensus 20 YLQlr~dIl~Grl--pcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~~~le~~~~~I~~~Hk~L 97 (356)
|..+..-|.+..- .++.++-+.|-||--||..||++...+ +.+ .+ ....--+.|+++
T Consensus 5 F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P--~~~--------d~-----------~~~~K~~AW~~l 63 (87)
T PF00887_consen 5 FEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRP--GFF--------DI-----------EGRAKWDAWKAL 63 (87)
T ss_dssp HHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CT--TTT--------CH-----------HHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCC--cch--------hH-----------HHHHHHHHHHHc
Confidence 4444555554444 889999999999999999999984332 222 11 112334689999
Q ss_pred cCCCHHHHHHHHHHHHhcC
Q psy9052 98 VGLSQGTAEEYYILAAQQL 116 (356)
Q Consensus 98 ~GmS~~eAe~~FL~~a~~L 116 (356)
.|||+++|+..|++++.++
T Consensus 64 ~gms~~eA~~~Yi~~v~~~ 82 (87)
T PF00887_consen 64 KGMSKEEAMREYIELVEEL 82 (87)
T ss_dssp TTTHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 20
>PTZ00458 acyl CoA binding protein; Provisional
Probab=96.12 E-value=0.04 Score=44.89 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCcc--cCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCcchHHHHHHHHHHHhhhc
Q psy9052 20 FLQLKNDIIEGRI--QCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSAL 97 (356)
Q Consensus 20 YLQlr~dIl~Grl--pcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~~~le~~~~~I~~~Hk~L 97 (356)
|.++...|..-.- +++.++-..|=||--||..||++...+ +.+. + ....=-..|.++
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P--~~~d--------~-----------~~raKw~AW~~l 63 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEP--SMFK--------Y-----------QDRKKYEAWKSI 63 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCC--Cccc--------H-----------HHHHHHHHHHHc
Confidence 5666666654222 678999999999999999999864321 1111 0 112223579999
Q ss_pred cCCCHHHHHHHHHHHHhcC-CCC
Q psy9052 98 VGLSQGTAEEYYILAAQQL-DGY 119 (356)
Q Consensus 98 ~GmS~~eAe~~FL~~a~~L-p~Y 119 (356)
.|||+++|+..|++++.++ |.|
T Consensus 64 ~~ms~~eA~~~YI~l~~~l~~~w 86 (90)
T PTZ00458 64 ENLNREDAKKRYVEIVTELFPNW 86 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999875 444
No 21
>KOG3784|consensus
Probab=95.64 E-value=0.063 Score=54.22 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=75.7
Q ss_pred CCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCcchHHHHHH
Q psy9052 9 LITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTD 88 (356)
Q Consensus 9 ~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~~~le~~~~ 88 (356)
++.+...-.|+|.|+..||-+|....+.++.-+|-+|..|
T Consensus 205 L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq~q---------------------------------------- 244 (407)
T KOG3784|consen 205 LMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQEE---------------------------------------- 244 (407)
T ss_pred HhcCchHHHHHHHHHHHHHhcCceeechhhHHHHHHHHHh----------------------------------------
Confidence 4556677778899999999888876554443344444333
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEe--ec--CCCCeEEEEeeccceEE-eC--c--cceeeeecccc
Q psy9052 89 AVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLV--KD--EHGLETILGVTLKGIIV-SG--T--NSSKFYKWAEI 159 (356)
Q Consensus 89 ~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~V--kd--~~~~~l~LGV~~~GI~V-~~--~--~~~~~f~W~~I 159 (356)
.-+.+||+.|++|++||...|+- -| +.|.++.+-++-+-+.. .. . +....|.|..|
T Consensus 245 ---------------~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~ll~~~teegq~~q~i~F~~trm 309 (407)
T KOG3784|consen 245 ---------------ESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHELLLACTEEGQQNQEIAFRWTRM 309 (407)
T ss_pred ---------------hhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhheeeeccCCCccceeEEEeeee
Confidence 23568999999999999999973 23 57888888888888888 32 2 24578999999
Q ss_pred cceeccCc
Q psy9052 160 ANVLNHKK 167 (356)
Q Consensus 160 ~~lsf~~k 167 (356)
+.|.-...
T Consensus 310 r~Wrvte~ 317 (407)
T KOG3784|consen 310 RCWRVTEE 317 (407)
T ss_pred EeeeccHH
Confidence 99977654
No 22
>KOG4335|consensus
Probab=95.52 E-value=0.0059 Score=63.05 Aligned_cols=140 Identities=17% Similarity=0.119 Sum_probs=103.0
Q ss_pred cccCCC-CCCCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhcc--CCchhhhcC
Q psy9052 2 YYVSGI-SLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL--FPKDLVENG 78 (356)
Q Consensus 2 FY~~d~-~~L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~--lP~~i~~~~ 78 (356)
||.... ..+.|+..-+++|.-.|.+++.|++....+..+.+|.+.++...+.++.++|+...+..+.+ +|.....
T Consensus 335 ~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEelk~~~~t~~~-- 412 (558)
T KOG4335|consen 335 HLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEELKSWDHTSPE-- 412 (558)
T ss_pred cchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeehhhhhcccceeeccccccchhcccHHHhcccCCCCCh--
Confidence 344333 35788889999999999999999999999999999999999999999988898776654433 2222111
Q ss_pred CcchHHHHHHH-HHHHhhhc---cCCCHHHH--HHHHHHHHhcCCCCCceeEEeec--------CCCCeEEEEeeccceE
Q psy9052 79 HNGLLERLTDA-VIQQHSAL---VGLSQGTA--EEYYILAAQQLDGYGQETFLVKD--------EHGLETILGVTLKGII 144 (356)
Q Consensus 79 ~~~~le~~~~~-I~~~Hk~L---~GmS~~eA--e~~FL~~a~~Lp~YGv~~F~Vkd--------~~~~~l~LGV~~~GI~ 144 (356)
.++...|.+. +...++.+ .|++...| ...+|+.|-.++.||++++.-.| ....+..|||+ +|+.
T Consensus 413 -~~~~~~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~~pqd~ak~SpSD~~~~~~~vqv~-k~l~ 490 (558)
T KOG4335|consen 413 -EEEPILWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQGAEPAGPQDSAKGSPSDHSSSPAPVQVN-KGLP 490 (558)
T ss_pred -hhcchhhhhhhhhccccCccceechhHHHHHHHHHHHHHheeehhccccccCcccccCCCCCcccccccccccc-ccch
Confidence 0111123333 55555544 57777766 57899999999999999987644 34578899999 9999
Q ss_pred E
Q psy9052 145 V 145 (356)
Q Consensus 145 V 145 (356)
+
T Consensus 491 ~ 491 (558)
T KOG4335|consen 491 K 491 (558)
T ss_pred h
Confidence 9
No 23
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=94.99 E-value=0.093 Score=41.53 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCcchHHHHHHHHHHHhhhc
Q psy9052 18 HCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSAL 97 (356)
Q Consensus 18 LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~~~le~~~~~I~~~Hk~L 97 (356)
..|.|...+|-+=.-.-+.++...|-||.-|+..||-+.+++ +++.. .. .---+.|..|
T Consensus 4 ~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekP--G~~d~--------~g-----------r~K~eAW~~L 62 (87)
T COG4281 4 TRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKP--GFFDI--------VG-----------RYKYEAWAGL 62 (87)
T ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCC--Ccccc--------cc-----------chhHHHHhhc
Confidence 468999999985444456788999999999999999876654 33321 00 1112468899
Q ss_pred cCCCHHHHHHHHHHHHhcCC
Q psy9052 98 VGLSQGTAEEYYILAAQQLD 117 (356)
Q Consensus 98 ~GmS~~eAe~~FL~~a~~Lp 117 (356)
+|.|+++|+..||..+..|.
T Consensus 63 KGksqedA~qeYialVeeLk 82 (87)
T COG4281 63 KGKSQEDARQEYIALVEELK 82 (87)
T ss_pred cCccHHHHHHHHHHHHHHHH
Confidence 99999999999999997753
No 24
>KOG4335|consensus
Probab=94.57 E-value=0.032 Score=57.77 Aligned_cols=136 Identities=19% Similarity=0.264 Sum_probs=96.5
Q ss_pred CCchhHHHHHHHHHHHHHHcCc--ccCCHHHHHHHHHH-HHHhhhCCCCCccchhhhhh----hhccCCchhhhcCCcch
Q psy9052 10 ITDEMTRYHCFLQLKNDIIEGR--IQCNLDDAVVLASY-CMQAEFGNYNSERHTLEYLK----DFALFPKDLVENGHNGL 82 (356)
Q Consensus 10 L~de~TR~LlYLQlr~dIl~Gr--lpcs~e~av~LAAL-~lQae~GDy~~~~h~~~yl~----~~~~lP~~i~~~~~~~~ 82 (356)
+.++.-..+.|.-++++|+.+| ++|+.+....++|| .+-..+|+|++..+....++ ...|||.+++...-.-.
T Consensus 216 ~~~ee~a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~~~gir~~~~~qs~f~~w~cs~~lslq 295 (558)
T KOG4335|consen 216 IIDEEVARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRPAACGIRLSEKLQSFFPAWLCSRGLSLQ 295 (558)
T ss_pred hhHHHHHHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccchhhhcchHHHHHHHhHHHHhhcchhhh
Confidence 3445555566778999999999 88999999999999 67899999999888776666 35789999887421000
Q ss_pred H---------HHHHHHHHHHhhhccCCC---HHHH-----HHHHHHHHhcCCCCCceeEE-eecC---------CCCeEE
Q psy9052 83 L---------ERLTDAVIQQHSALVGLS---QGTA-----EEYYILAAQQLDGYGQETFL-VKDE---------HGLETI 135 (356)
Q Consensus 83 l---------e~~~~~I~~~Hk~L~GmS---~~eA-----e~~FL~~a~~Lp~YGv~~F~-Vkd~---------~~~~l~ 135 (356)
+ -.-..+++.+|+.+.-.. .-++ -..++..+-+.|.||..+|+ +++. ....+.
T Consensus 296 lk~~h~p~~~v~~wp~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~ 375 (558)
T KOG4335|consen 296 LKLRHRPARAVPGWPELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVS 375 (558)
T ss_pred hhhccCCcccccccHHHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeee
Confidence 0 001255677777663222 1122 24678888899999998886 4432 346888
Q ss_pred EE-eeccceEE
Q psy9052 136 LG-VTLKGIIV 145 (356)
Q Consensus 136 LG-V~~~GI~V 145 (356)
+| |+..|++|
T Consensus 376 va~i~l~~vhv 386 (558)
T KOG4335|consen 376 VASISLEGVHV 386 (558)
T ss_pred hhhhhccccee
Confidence 99 99999999
No 25
>KOG0817|consensus
Probab=92.21 E-value=1.3 Score=39.08 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhhhccCCchhhhcCCcchHHHHHHHHHHHhhhcc
Q psy9052 19 CFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALV 98 (356)
Q Consensus 19 lYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~~~~lP~~i~~~~~~~~le~~~~~I~~~Hk~L~ 98 (356)
-|......+-.=-=..+.++.++|=||-=||..||++..++. +++. ..+.=-+.|+++.
T Consensus 8 ~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg--~~d~-------------------~~k~Kw~AW~~l~ 66 (142)
T KOG0817|consen 8 KFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPG--FFDE-------------------EGKAKWQAWNSLG 66 (142)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCc--hhhH-------------------HHHHHHHHHHhcC
Confidence 455555555422222678999999999999999998765432 2221 1122234699999
Q ss_pred CCCHHHHHHHHHHHHhc-CCCCCcee
Q psy9052 99 GLSQGTAEEYYILAAQQ-LDGYGQET 123 (356)
Q Consensus 99 GmS~~eAe~~FL~~a~~-Lp~YGv~~ 123 (356)
||++++|+..|+..+.+ .+.||...
T Consensus 67 ~~s~~eA~~~Yv~~~~~l~~~~~~~~ 92 (142)
T KOG0817|consen 67 GMSKEEAMEAYVEKVEELIPKYGAEA 92 (142)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999976 56777544
No 26
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=86.10 E-value=8.4 Score=31.57 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCeEEEEeeccceEE-eCc--cceeeeecccccceeccCceEEEEEcCCC---CceEEEEeCCHHHHHHHHHHH
Q psy9052 131 GLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHKKNFGIETSNAD---DHIVNFVFPDVESAKYVFRMC 198 (356)
Q Consensus 131 ~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~k~F~I~~~~~~---~~~~~F~~~s~~~AK~Lwklc 198 (356)
..+.+|.|+...|.+ +.. ..+..||+..|.+.+..++.|.++..... .-...|.+++ |+.|++..
T Consensus 21 ~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~~F~fEaGRrc~tG~G~f~f~t~~---a~~I~~~v 91 (100)
T PF02174_consen 21 SGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDGIFSFEAGRRCPTGEGLFWFQTPD---AEEIFETV 91 (100)
T ss_dssp EEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETTEEEEEESTTSTTCSEEEEEEEST---HHHHHHHH
T ss_pred eEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCCEEEEEECCcCCCCCcEEEEEeCC---HHHHHHHH
Confidence 357899999999999 443 46789999999999999999999997432 2346677766 44455444
No 27
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=81.89 E-value=13 Score=30.36 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCCCeEEEEeeccceEE-eCc--cceeeeecccccceecc---CceEEEEEcCCC-Cc--eEEEEeCCHHHHHHHHHH
Q psy9052 129 EHGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNH---KKNFGIETSNAD-DH--IVNFVFPDVESAKYVFRM 197 (356)
Q Consensus 129 ~~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~---~k~F~I~~~~~~-~~--~~~F~~~s~~~AK~Lwkl 197 (356)
..+.+++|-|+..||.+ +.+ ..+..|+..+|.-++.. .+.|-+.++... +. =..|.+.+. |+.|-..
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~~~~CHvF~c~~~--a~~i~~~ 114 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGSSRFECHVFKCEKV--AEPIALT 114 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCCcEEEEEEEeCch--HHHHHHH
Confidence 46689999999999999 544 45788898888887666 457888887543 22 257777776 5554443
No 28
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=80.12 E-value=16 Score=30.63 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=48.4
Q ss_pred CCeEEEEeeccceEE-eCc--cceeeeecccccceeccCceEEEEEcCCC--C-ceEEEEeCCHHHHHHHHHHH
Q psy9052 131 GLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHKKNFGIETSNAD--D-HIVNFVFPDVESAKYVFRMC 198 (356)
Q Consensus 131 ~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~k~F~I~~~~~~--~-~~~~F~~~s~~~AK~Lwklc 198 (356)
..++||-|....|.+ +.. .++..|||.-|.+....++.|.++..... + -...|.+... +.|+.+.
T Consensus 20 ~G~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~d~~~FsFEAGRrC~tGeG~f~F~t~~~---~~if~~v 90 (104)
T cd01203 20 PGSYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGRDKGKFSFEAGRRCTSGEGVFTFDTTQG---NEIFRAV 90 (104)
T ss_pred ceeEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcccCCEEEEEecCcCCCCCcEEEEecCCH---HHHHHHH
Confidence 358999999999999 543 46789999999999999999999987532 2 2445555543 4555544
No 29
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=80.11 E-value=22 Score=29.67 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=48.9
Q ss_pred CCCCeEEEEeeccceEE-eCc--cceeeeecccccceecc---CceEEEEEcCCCCc-e--EEEEeCCHH--HHHHHHHH
Q psy9052 129 EHGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNH---KKNFGIETSNADDH-I--VNFVFPDVE--SAKYVFRM 197 (356)
Q Consensus 129 ~~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~---~k~F~I~~~~~~~~-~--~~F~~~s~~--~AK~Lwkl 197 (356)
+...++.|-|+..||.+ +.+ +.+..|+..+|.-.+.. .+.|.+..+..... . ..|.+.+.. .+..|-..
T Consensus 41 ~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~a~~i~~~i~~a 120 (134)
T smart00462 41 KEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKAAEDIALAIGQA 120 (134)
T ss_pred CCCCEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCchHHHHHHHHHHH
Confidence 45689999999999999 543 45789999999877766 45677777654332 2 466666642 44444444
Q ss_pred HHHh
Q psy9052 198 CVHQ 201 (356)
Q Consensus 198 cie~ 201 (356)
+...
T Consensus 121 F~~a 124 (134)
T smart00462 121 FQLA 124 (134)
T ss_pred HHHH
Confidence 4433
No 30
>PF14317 YcxB: YcxB-like protein
Probab=80.08 E-value=2.7 Score=30.02 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=30.6
Q ss_pred eeccceEEeCccceeeeecccccceeccCceEEEEEc
Q psy9052 138 VTLKGIIVSGTNSSKFYKWAEIANVLNHKKNFGIETS 174 (356)
Q Consensus 138 V~~~GI~V~~~~~~~~f~W~~I~~lsf~~k~F~I~~~ 174 (356)
++.+||.+........++|.+|.++.-.++.|.|.+.
T Consensus 1 f~~~gi~~~~~~~~~~~~w~~i~~v~e~~~~~~l~~~ 37 (62)
T PF14317_consen 1 FDEDGIIIESGNGSSRIPWSDIKKVVETKDYFYLYLG 37 (62)
T ss_pred CCCCEEEEEECCeEEEEEchheEEEEEeCCEEEEEEC
Confidence 4678999944445678999999999999999999875
No 31
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=78.87 E-value=16 Score=30.61 Aligned_cols=68 Identities=13% Similarity=-0.012 Sum_probs=50.2
Q ss_pred CCeEEEEeeccceEE-eCc--cceeeeecccccceeccCceEEEEEcCCC---CceEEEEeC-CHHHHHHHHHHH
Q psy9052 131 GLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHKKNFGIETSNAD---DHIVNFVFP-DVESAKYVFRMC 198 (356)
Q Consensus 131 ~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~k~F~I~~~~~~---~~~~~F~~~-s~~~AK~Lwklc 198 (356)
..+.+|-++.++|.+ +.. .....|||..|......+..|.++..... .-...|.+. ....++.+-..+
T Consensus 20 ~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v~~~i 94 (104)
T cd00824 20 LGSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDSNLFSFEAGRRCVTGEGIFTFQTDRAEEIFQNVHETI 94 (104)
T ss_pred ceeEEEEECCCEEEEEecCCCceEEEeehHHeeecccCCCEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 358899999999999 544 46788999999999999999999986432 235677776 334455444443
No 32
>KOG3527|consensus
Probab=77.92 E-value=0.55 Score=51.77 Aligned_cols=194 Identities=13% Similarity=0.117 Sum_probs=134.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhCCCCCccchhhhhhh---hccCCchhhhcCCcchHHHH
Q psy9052 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKD---FALFPKDLVENGHNGLLERL 86 (356)
Q Consensus 10 L~de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~~~yl~~---~~~lP~~i~~~~~~~~le~~ 86 (356)
..|...|+.-+.+.+.+.++++.+........|++++++-.+||-..+.....-+.. ..+.... .+ ...
T Consensus 470 s~dk~a~ee~~kerrrrelEer~~Ae~~~h~~ltsf~A~n~~g~~~~E~tdtkE~d~~sg~rvi~~~--h~------~~~ 541 (975)
T KOG3527|consen 470 SEDKHAREEEVKERRRRELEERTPAELSLHERLTSFAADNIFGDAPAETTDTKELDKVSGPRVIRAY--HS------GET 541 (975)
T ss_pred hhhhhcchhhccccccccccccccchhhhhhhcccchhhhhccccchhhccccccccccCCcccccc--cC------ccc
Confidence 445566777788999999999999999999999999999999983322211111110 1111111 00 012
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHhcCCCCCceeEEe-ec--CCCCeEEE-EeeccceEE-eCccceeeeecccccc
Q psy9052 87 TDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLV-KD--EHGLETIL-GVTLKGIIV-SGTNSSKFYKWAEIAN 161 (356)
Q Consensus 87 ~~~I~~~Hk~L~GmS~~eAe~~FL~~a~~Lp~YGv~~F~V-kd--~~~~~l~L-GV~~~GI~V-~~~~~~~~f~W~~I~~ 161 (356)
...+...++..+|.+..+++..|...+....+||...+.. .+ ..+.++-. .+...+|-. ..-.....+.|..|.+
T Consensus 542 ~~~i~~l~e~~rs~s~setee~~~~r~~~k~~~Gi~~~~~e~~~~k~~~~~d~~~~~ee~ipeaEpv~~t~s~v~~ni~~ 621 (975)
T KOG3527|consen 542 YKKIVNLSELMRSQSESETEEQFRDRCKHKALYGIHLFEAESDKDKEPEPVDRAEVGEEDIPEAEPVQKTHSFVWQNIIT 621 (975)
T ss_pred ccccccchhhhccccccchhhhhhcccccccccccchhhhhcccccCcccccchhcccccccccceeccccccccccccc
Confidence 2445567788899999999999999999999999999864 22 23333321 122666666 4445668899999999
Q ss_pred eeccCceEEEEEcCC----CCceEEEEeCCHHHHHHHHHHHHHhhHHhhcCccc
Q psy9052 162 VLNHKKNFGIETSNA----DDHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEAT 211 (356)
Q Consensus 162 lsf~~k~F~I~~~~~----~~~~~~F~~~s~~~AK~Lwklcie~H~Ffr~~~~~ 211 (356)
.++..-.|.+.+... .+....+.-+-....+.=|++....|+|+...+..
T Consensus 622 ksy~~~~l~~dv~~~AvEk~e~p~v~te~v~v~~e~~~k~~~~~~t~~pi~qte 675 (975)
T KOG3527|consen 622 KSYREGYLSIDVKAGAVEKNEKPLVKTEPVTVLDERNAKSAEIHTTFVPIVQTE 675 (975)
T ss_pred cccccccceeccCcchhhcccccceeccceehhhhccccccccccccccccccc
Confidence 999999999988632 12234455555567888899999999999887663
No 33
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=77.25 E-value=29 Score=32.22 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCCCCceeEEeecCCCCeEEEEeeccceEE-eCcc--ceeeeecccccce-eccC------ceEEEEEc
Q psy9052 105 AEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIV-SGTN--SSKFYKWAEIANV-LNHK------KNFGIETS 174 (356)
Q Consensus 105 Ae~~FL~~a~~Lp~YGv~~F~Vkd~~~~~l~LGV~~~GI~V-~~~~--~~~~f~W~~I~~l-sf~~------k~F~I~~~ 174 (356)
-...+|+.+|++ |--.|. .....++++|+..||.| +.++ .+..+|.-.|..+ +|.+ .-|.+++.
T Consensus 87 ~lI~~ID~aQq~---GkLP~v---~~~eevil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~YdDGlG~g~~llAlK~~ 160 (200)
T PF10480_consen 87 ELINYIDSAQQD---GKLPFV---PSDEEVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVCYDDGLGAGKNLLALKVG 160 (200)
T ss_pred HHHHHHHHHhhc---CcCCCC---CCCCeEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEEEecCcCCcceEEEEEcc
Confidence 356788888864 333332 23357889999999999 5543 5688888888855 3332 33555655
Q ss_pred CCCCc---eEEEEeCCHHHHHHHHHHHH
Q psy9052 175 NADDH---IVNFVFPDVESAKYVFRMCV 199 (356)
Q Consensus 175 ~~~~~---~~~F~~~s~~~AK~Lwklci 199 (356)
....+ -..|.|.+...|.-|=++..
T Consensus 161 ~~~~e~y~l~v~Qcss~~qA~~ICk~l~ 188 (200)
T PF10480_consen 161 DERQEEYQLWVYQCSSDEQAQEICKVLG 188 (200)
T ss_pred CCCcceEEEEEEEcCCHHHHHHHHHHHH
Confidence 44222 36888999988887766653
No 34
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=73.48 E-value=38 Score=28.29 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=42.5
Q ss_pred CCCCeEEEEeeccceEE-eCc--cceeeeecccccceec-c---CceEEEEEcCCC-Cce--EEEEeCC
Q psy9052 129 EHGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLN-H---KKNFGIETSNAD-DHI--VNFVFPD 187 (356)
Q Consensus 129 ~~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf-~---~k~F~I~~~~~~-~~~--~~F~~~s 187 (356)
..+.+++|.|+..||.| +.+ ..+..++-..|.-++. . .+.|........ +.. ..|.+.+
T Consensus 49 ~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~~~~CHVF~~~~ 117 (140)
T PF00640_consen 49 KKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRSSRFYCHVFKCED 117 (140)
T ss_dssp STSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSSSCEEEEEEEESS
T ss_pred ccCeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCCCccccEeeeHhh
Confidence 35689999999999999 543 4678999999998888 3 347777554332 222 5777777
No 35
>PF14470 bPH_3: Bacterial PH domain
Probab=72.52 E-value=29 Score=27.10 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCCeEEEEeeccceEE-eCc----cceeeeecccccceeccC----ceEEEEEcCCCCceEEEEeCCHHHHHHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGT----NSSKFYKWAEIANVLNHK----KNFGIETSNADDHIVNFVFPDVESAKYVFRMC 198 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~----~~~~~f~W~~I~~lsf~~----k~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklc 198 (356)
...+-++.++.+-|.+ ... .....|+|.+|.++..++ .++.|.+. ++.+.|..-+...++.+.+..
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~~---~~~~~i~~i~k~~~~~~~~~i 94 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIETN---GEKIKIDNIQKGDVKEFYEYI 94 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEEC---CEEEEEEEcCHHHHHHHHHHH
Confidence 3567788889888888 322 346899999999999997 67888873 457777765777777776654
No 36
>KOG3878|consensus
Probab=71.00 E-value=5.4 Score=39.94 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=52.1
Q ss_pred cCcccCCHHHHHHHHHHHHHhhhCCCCCccch-hhhhhhhccCCchhhhcCCcchHHHHHHHHHHHhhhccCCCHHHHHH
Q psy9052 29 EGRIQCNLDDAVVLASYCMQAEFGNYNSERHT-LEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEE 107 (356)
Q Consensus 29 ~Grlpcs~e~av~LAAL~lQae~GDy~~~~h~-~~yl~~~~~lP~~i~~~~~~~~le~~~~~I~~~Hk~L~GmS~~eAe~ 107 (356)
---++++-|+-+.|-||--|+.+|.|+++..+ .++|.. +-....++|+.|-.||+++|+.
T Consensus 48 GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv-------------------~GnDr~~~W~~LG~~sre~AM~ 108 (469)
T KOG3878|consen 48 GKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDV-------------------IGNDRQQHWQLLGEISREQAME 108 (469)
T ss_pred CCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeec-------------------ccChHHHHHHHHhcccHHHHHH
Confidence 34568899999999999999999999976542 233321 1234567899999999999999
Q ss_pred HHHHHHhc
Q psy9052 108 YYILAAQQ 115 (356)
Q Consensus 108 ~FL~~a~~ 115 (356)
.|+.+.-.
T Consensus 109 ~FV~Lldr 116 (469)
T KOG3878|consen 109 GFVDLLDR 116 (469)
T ss_pred HHHHHHHh
Confidence 99887644
No 37
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=67.96 E-value=21 Score=31.48 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred CCCeEEEEeeccceEE-eCc--cceeeeecccccceecc---CceEEEEEcCCCCceEEEEeCCHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNH---KKNFGIETSNADDHIVNFVFPDVESAKY 193 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~---~k~F~I~~~~~~~~~~~F~~~s~~~AK~ 193 (356)
....++|-|+.+||.| +.. ..+..++-..|.-++-. .|.|...++..++....|.+.+.+.|..
T Consensus 51 kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~~~~~H~f~~~k~~k~A~~ 120 (139)
T cd01215 51 HKTRITLQINIDGIKVLDEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGEPGGKHRFYGIKTAQAADQ 120 (139)
T ss_pred ccceEEEEEccCCEEEEcCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEcCCCcEEEEEEEhHHcchh
Confidence 4579999999999999 543 34566666655544333 4678888776444334444555455533
No 38
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=65.25 E-value=12 Score=32.02 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=36.2
Q ss_pred eeccceEE-eCcc--ceeeeecccccce----eccCc---eEEEEEcCCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy9052 138 VTLKGIIV-SGTN--SSKFYKWAEIANV----LNHKK---NFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQ 201 (356)
Q Consensus 138 V~~~GI~V-~~~~--~~~~f~W~~I~~l----sf~~k---~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklcie~ 201 (356)
|+.+|+.. +..+ ....+||.+|..+ .|++| .|.|.+... -.|.|.+ +.++.++|.+.+|
T Consensus 29 iGDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~~----G~f~Fss-kd~k~~Lk~~r~y 97 (118)
T PF06115_consen 29 IGDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKKN----GKFTFSS-KDSKKVLKAIRKY 97 (118)
T ss_pred EcccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEECCC----CEEEEEE-CChHHHHHHHHHh
Confidence 34556666 2222 3468999999765 55554 488887532 3466655 3567777777655
No 39
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=62.69 E-value=19 Score=27.42 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=26.5
Q ss_pred EEeeccceEEeCccceeeeecccccceeccCceE
Q psy9052 136 LGVTLKGIIVSGTNSSKFYKWAEIANVLNHKKNF 169 (356)
Q Consensus 136 LGV~~~GI~V~~~~~~~~f~W~~I~~lsf~~k~F 169 (356)
+-|+..||.+.+--....++|.+|..+.+....-
T Consensus 4 v~v~~~Gl~vr~~~rt~~vpW~~I~~v~~~~~~~ 37 (73)
T PF10756_consen 4 VEVDPDGLRVRNLFRTRRVPWSEIAGVRFRRGRR 37 (73)
T ss_pred EEEcCCcEEEEcCceeEEEChHHeEEEEccCCce
Confidence 5678999999332356799999999999887654
No 40
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=62.30 E-value=62 Score=27.51 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=45.3
Q ss_pred CCCCeEEEEeeccceEE-eCc--cceeeeecccccceeccC---ceEEEEEcCCC-Cce--EEEEeCCHHHHHHHHHH
Q psy9052 129 EHGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHK---KNFGIETSNAD-DHI--VNFVFPDVESAKYVFRM 197 (356)
Q Consensus 129 ~~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~---k~F~I~~~~~~-~~~--~~F~~~s~~~AK~Lwkl 197 (356)
+...++.|-|+.+||.| +.+ ..+..++..+|+-++... +.|....+... ++. ..|.+...+.|+.|...
T Consensus 42 ~k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~t 119 (132)
T cd01267 42 EKIPKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQDKEDLRFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILT 119 (132)
T ss_pred CCCCeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecCCCCCeEEEEEEecCCCCceEEEEEECCCHHHHHHHHHH
Confidence 35678999999999999 654 356788888887776543 45666665443 223 35555665556665543
No 41
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=59.57 E-value=46 Score=28.91 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=45.5
Q ss_pred CCCeEEEEeeccceEE-eCc--cceeeeecccccceeccC---ceEEEEEcCCC--CceEEEEeCCHHHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHK---KNFGIETSNAD--DHIVNFVFPDVESAKYVF 195 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~---k~F~I~~~~~~--~~~~~F~~~s~~~AK~Lw 195 (356)
...++.|-|+.+||.| +.+ ..+..++..+|+-.+... +.|....+... ++..++.|.+.+.|+.|-
T Consensus 53 k~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~d~~~~r~FayIak~~~~~~~~~ChvF~s~~~A~~I~ 126 (142)
T cd01273 53 KLQKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCADDKDDKRMFSFIAKAEGASGKHSCFVFTSEKLAEDIT 126 (142)
T ss_pred cCcEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEecCCCCCeEEEEEecCCCCCCcEEEEEEeccchHHHHH
Confidence 3478999999999999 654 356778877777776653 45776666442 455677777766666643
No 42
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=58.58 E-value=89 Score=26.82 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=45.3
Q ss_pred CCCCeEEEEeeccceEE-eCcc--ceeeeecccccceeccC---ceEEEEEcCCCCce--EEEEeCCHHHHHHHHHH
Q psy9052 129 EHGLETILGVTLKGIIV-SGTN--SSKFYKWAEIANVLNHK---KNFGIETSNADDHI--VNFVFPDVESAKYVFRM 197 (356)
Q Consensus 129 ~~~~~l~LGV~~~GI~V-~~~~--~~~~f~W~~I~~lsf~~---k~F~I~~~~~~~~~--~~F~~~s~~~AK~Lwkl 197 (356)
+...++.|-|+.+||.+ +.++ .+..++-.+|.-.+... +.|....++..+.. ..|.+.+.+.|..|...
T Consensus 38 ~k~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~ISf~~~D~~d~~~FayIakd~~~~~~CHvF~~~~~~~A~~I~~t 114 (127)
T cd01274 38 ETIPRVTLDLTCNGVKFIDETFKTLIDGHGIYNIRCVCQDREDLNFFAYITKDTENRHYCHVFCVLTSGLAAEIITT 114 (127)
T ss_pred CCCCEEEEEEeCCeEEEEECCCCeEEEEeeeeEEEEEecCCCCceEEEEEeeCCCCCEEEEEEEcCCHHHHHHHHHH
Confidence 35578999999999999 6543 45777766666544333 46877776554333 35566667667666543
No 43
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=55.71 E-value=60 Score=28.22 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=50.1
Q ss_pred ecCCCCeEEEEeeccceEE-eCcc--ceeeeecccccceeccC---ceEEEEEcCCCC----ceEEEE--eCCHHHHHHH
Q psy9052 127 KDEHGLETILGVTLKGIIV-SGTN--SSKFYKWAEIANVLNHK---KNFGIETSNADD----HIVNFV--FPDVESAKYV 194 (356)
Q Consensus 127 kd~~~~~l~LGV~~~GI~V-~~~~--~~~~f~W~~I~~lsf~~---k~F~I~~~~~~~----~~~~F~--~~s~~~AK~L 194 (356)
+..+|..+.|-|+..||.+ +.++ .....++.+|..-+-.. +.|-+.++.... +-+.|+ +.|.+.|..|
T Consensus 38 kr~~nrtm~~~I~~~~v~lispdtK~vl~~k~f~dISsC~qg~~~~dhFgFIcrEs~~~~~~~f~CyVFqc~Se~la~eI 117 (129)
T cd01269 38 RLKDNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCADESLVDEV 117 (129)
T ss_pred hccCCcEEEEEEeccceEEEcCCcceEEEecCccccchhhcCCCCcceEEEEeccCCCCCcceEEEEEEEcCCHHHHHHH
Confidence 4445788999999999999 6654 45778889998876553 578888876532 124454 4588888866
Q ss_pred HH
Q psy9052 195 FR 196 (356)
Q Consensus 195 wk 196 (356)
..
T Consensus 118 ~l 119 (129)
T cd01269 118 ML 119 (129)
T ss_pred HH
Confidence 53
No 44
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=55.45 E-value=98 Score=25.64 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=48.9
Q ss_pred CeEEEEeeccceEE-eC--ccceeeeecccccceeccCceEEEEEcCCCC-ceEEEEeCCHHHHHHHHHHHHH
Q psy9052 132 LETILGVTLKGIIV-SG--TNSSKFYKWAEIANVLNHKKNFGIETSNADD-HIVNFVFPDVESAKYVFRMCVH 200 (356)
Q Consensus 132 ~~l~LGV~~~GI~V-~~--~~~~~~f~W~~I~~lsf~~k~F~I~~~~~~~-~~~~F~~~s~~~AK~Lwklcie 200 (356)
...+|-++++.|.+ +. ......|||..|......+..|.++...... -.-.|.|.+ ..|+.|+.+.-+
T Consensus 20 G~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t-~~a~~i~~~v~~ 91 (98)
T smart00310 20 GSYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGRDKNFFFFEAGRRCVSGPGEFTFQT-VVAQEIFQLVLE 91 (98)
T ss_pred eeEEEEECCcEEEEEecCCCccEEEeehhHeeeecCCCCEEEEEccCcCCCCCCEEEEEc-CcHHHHHHHHHH
Confidence 47899999999999 53 3456789999999999999999999864321 122344443 356666665533
No 45
>cd01217 CG12581 CG12581 Phosphotyrosine-binding (PTB) domain. CG12581 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=55.36 E-value=64 Score=28.86 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=25.7
Q ss_pred cCCCCeEEEEeeccceEE-eC----ccceeeeecccccceec
Q psy9052 128 DEHGLETILGVTLKGIIV-SG----TNSSKFYKWAEIANVLN 164 (356)
Q Consensus 128 d~~~~~l~LGV~~~GI~V-~~----~~~~~~f~W~~I~~lsf 164 (356)
++.+..-||-|+..|+.| .. +.....||...|.-|+-
T Consensus 39 ~kKl~~gsL~Ics~GLrvk~s~~~~~~E~~~fP~~~i~~~aA 80 (158)
T cd01217 39 KKKGIDSWLSVWSNGLLLEISALAEKNETLFFPIHNLHYCAA 80 (158)
T ss_pred ccccccceEEEecCceEEEeccccccccccccccceeeEeeE
Confidence 456678899999999999 21 23346777766665543
No 46
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=49.00 E-value=1e+02 Score=25.80 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=47.0
Q ss_pred CeEEEEeeccceEE-eCccceeeeecccccceeccCceEEEEEcCCC--C-ceEEEEeCCHHHHHHHHHHH
Q psy9052 132 LETILGVTLKGIIV-SGTNSSKFYKWAEIANVLNHKKNFGIETSNAD--D-HIVNFVFPDVESAKYVFRMC 198 (356)
Q Consensus 132 ~~l~LGV~~~GI~V-~~~~~~~~f~W~~I~~lsf~~k~F~I~~~~~~--~-~~~~F~~~s~~~AK~Lwklc 198 (356)
...||-|+..-|.+ ..+.....|||..|.+..+.+..|.++..... + -...|.+.. |+.|+.+.
T Consensus 21 g~g~L~vt~~~L~l~~~~~~~~~WPl~~LRRYG~d~~~FsFEAGRRC~tGeG~f~F~t~~---~~~if~~v 88 (102)
T cd01202 21 GSGWLELTRTELTLYISGKEPVVWPLLCLRRYGYNSDLFSFESGRRCQTGEGIFAFRCKR---AEELFNLL 88 (102)
T ss_pred eeEEEEecceEEEEEcCCCCEEEccHHHhHhhccCCCEEEEEccCcCCCCCCEEEEEcCC---HHHHHHHH
Confidence 46799999999999 54445679999999999999999999986532 1 245555544 55555554
No 47
>KOG3727|consensus
Probab=48.33 E-value=9.7 Score=40.60 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHhhhC
Q psy9052 12 DEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFG 52 (356)
Q Consensus 12 de~TR~LlYLQlr~dIl~Grlpcs~e~av~LAAL~lQae~G 52 (356)
|.+--.++|.|+|-+++...+.|+++++..+||++.|+.+-
T Consensus 276 d~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~~ 316 (664)
T KOG3727|consen 276 DQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNHQ 316 (664)
T ss_pred ceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 44445679999999999999999999999999999998653
No 48
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.24 E-value=45 Score=28.47 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=34.8
Q ss_pred eccceEEeCc---cceeeeecccccceecc------CceEEEEEcCCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy9052 139 TLKGIIVSGT---NSSKFYKWAEIANVLNH------KKNFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQ 201 (356)
Q Consensus 139 ~~~GI~V~~~---~~~~~f~W~~I~~lsf~------~k~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklcie~ 201 (356)
+.+|+.+.++ +.-..|||++|..+.-+ .+.|.|.+... -.|.|.| +.+..+++.+.++
T Consensus 30 GDkgfEFYn~~nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~~----gk~~FaS-kdsg~iLk~ir~y 96 (122)
T COG4687 30 GDKGFEFYNDRNVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDTQ----GKVRFAS-KDSGKILKKIREY 96 (122)
T ss_pred cccceeecCCCChhheeEecHHHhheeheeehhhhhcceEEEEEcCC----ceEEEEe-CCchhHHHHHHHH
Confidence 3455555222 24578999999766433 35788887533 3466665 3556677766554
No 49
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=41.29 E-value=2e+02 Score=26.43 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCCeEEEEeeccceEE-eCccceeeeecccccce---eccCceEEEEEcCCCC------ceEEEEeCCHHHHHHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGTNSSKFYKWAEIANV---LNHKKNFGIETSNADD------HIVNFVFPDVESAKYVFRMC 198 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~~~~~~f~W~~I~~l---sf~~k~F~I~~~~~~~------~~~~F~~~s~~~AK~Lwklc 198 (356)
.+..+.|-|++.||.+ ..+.....|+-..|.-- ....|.|...++.+.+ +=..|.|++...|+.|-...
T Consensus 37 ~~~~m~L~V~~~Gik~~~~~~~~~~y~i~RItYC~ad~~~PrVFawIyrhe~~~~~~~L~CHAvlC~k~~~Akama~~L 115 (182)
T PF14719_consen 37 PDKKMKLTVSPSGIKMETKDKGLTEYWIHRITYCTADPQHPRVFAWIYRHEGKKLKVELRCHAVLCSKEEKAKAMARAL 115 (182)
T ss_pred CCceeEEEEcCCceEEEECCCCceEEEeeeEEEecCCCCCCceEEEEEEcccCCCcccEEEEEEEECCHHHHHHHHHHH
Confidence 4568899999999999 55544455554444322 2235789988865422 12588899998888875443
No 50
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=33.60 E-value=1.7e+02 Score=24.97 Aligned_cols=72 Identities=8% Similarity=-0.010 Sum_probs=47.0
Q ss_pred CCCeEEEEeeccceEE-eCcc--ceeeeecccccceeccC--ceEEEEEcCCCCce--EEEEeCCH--HHHHHHHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGTN--SSKFYKWAEIANVLNHK--KNFGIETSNADDHI--VNFVFPDV--ESAKYVFRMCVH 200 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~~--~~~~f~W~~I~~lsf~~--k~F~I~~~~~~~~~--~~F~~~s~--~~AK~Lwklcie 200 (356)
.+.++.|-|+..||.| +.++ .+..++-..|.-++-.+ +.|-......++.- ..|.+... ..|+.|=+.|..
T Consensus 38 ~~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk~~r~FafI~~~~~~~~~CHVF~c~~~a~~i~~tv~~ac~l 117 (123)
T cd01216 38 DWKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGRDVRDFAFIMRTERRRFMCHVFRCEPNAGALATTVEAACKL 117 (123)
T ss_pred cCeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCCCCcEEEEEEEcCCCeEEEEEEEcCCCHHHHHHHHHHHHHH
Confidence 4578999999999999 6543 57888888887776653 46766666443333 34555433 456666666644
Q ss_pred h
Q psy9052 201 Q 201 (356)
Q Consensus 201 ~ 201 (356)
.
T Consensus 118 ~ 118 (123)
T cd01216 118 R 118 (123)
T ss_pred H
Confidence 3
No 51
>KOG1431|consensus
Probab=32.50 E-value=39 Score=32.69 Aligned_cols=28 Identities=39% Similarity=0.616 Sum_probs=23.3
Q ss_pred CCchhhHhhhCCCCCCCCChHHHHHHHhh
Q psy9052 284 HQDIDKLRSLLPSYRPAPDYETAIQQKYN 312 (356)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (356)
.-+..+||+|||.|+=.| .|+||++-|.
T Consensus 277 tasnsKL~sl~pd~~ft~-l~~ai~~t~~ 304 (315)
T KOG1431|consen 277 TASNSKLRSLLPDFKFTP-LEQAISETVQ 304 (315)
T ss_pred ccchHHHHHhCCCcccCh-HHHHHHHHHH
Confidence 345579999999999765 8999999875
No 52
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=30.73 E-value=3e+02 Score=24.16 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=44.8
Q ss_pred CCCeEEEEeeccceEE-eCccceeeeecccccceec---cCceEEEEEcCCCC------ceEEEEeCCHHHHHHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGTNSSKFYKWAEIANVLN---HKKNFGIETSNADD------HIVNFVFPDVESAKYVFRMC 198 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~~~~~~f~W~~I~~lsf---~~k~F~I~~~~~~~------~~~~F~~~s~~~AK~Lwklc 198 (356)
....+.|-|+++||.+ +.......|+-.+|.=-+- ..+-|.-..+.+.+ +=..|-|...+.||.+-...
T Consensus 40 ~~~km~L~Vsp~GI~~~~~~~~~~~~~i~RIsYCsad~~~p~VFa~I~r~~~~~~~~~l~CHAvlC~k~~~A~aial~L 118 (133)
T cd01214 40 QDTKMKLTVSASGLKAVTAQRGLTEYWAHRITYCVAPARYPKVFCWIYRHEGKHLKVELRCHAVLCSKPEKAQAIALLL 118 (133)
T ss_pred ccceEEEEEcCCceEEEeccccceEEEEeeeeeecCCcCCCcEEEEEEeecccccCcceEEEEEEeCCHHHHHHHHHHH
Confidence 4467999999999999 5544455565444433222 24677766664422 12578889999999886544
No 53
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=29.51 E-value=1.8e+02 Score=26.23 Aligned_cols=45 Identities=11% Similarity=0.013 Sum_probs=32.0
Q ss_pred CCCCeEEEEeeccceEE-eCc--cceeeeecccccceeccCceEEEEE
Q psy9052 129 EHGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHKKNFGIET 173 (356)
Q Consensus 129 ~~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~k~F~I~~ 173 (356)
.-+..+-|-|+.+||.| +.+ ..+..++...|+-+.--++.|.+..
T Consensus 47 ~~~t~V~L~IS~~gV~v~~~~tk~im~~h~L~~ISy~AD~~d~~v~mA 94 (156)
T cd01208 47 QPSTEVDLFISTEKIMVLNTDLQEIXMDHALRTISYIADIGDLVVLMA 94 (156)
T ss_pred CCCcEEEEEEEeCeEEEEecCccceeccCcccceEEEecCCCeEEEEE
Confidence 34568999999999999 554 3467788877777764455555543
No 54
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=25.63 E-value=2.6e+02 Score=20.22 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=42.5
Q ss_pred CCCeEEEEeeccceEE-eCc--cce--eeeecccccceeccC------ceEEEEEcCCCCceEEEEeCCHHHHHHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGT--NSS--KFYKWAEIANVLNHK------KNFGIETSNADDHIVNFVFPDVESAKYVFRMC 198 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~--~~~--~~f~W~~I~~lsf~~------k~F~I~~~~~~~~~~~F~~~s~~~AK~Lwklc 198 (356)
...+.|+-|...+|.+ ..+ ... ..++...|. +.... ..|.|.......+.+.|.+++...+ ..|..+
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~-~~W~~a 95 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEA-QEWVEA 95 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHH-HHHHHH
Confidence 4568899999999998 332 222 367777777 65554 5666665431246788899887444 445444
No 55
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.08 E-value=3.2e+02 Score=23.95 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=35.0
Q ss_pred CCCeEEEEeeccceEE-eCc--cceeeeecccccceeccC---ceEEEEEcCC
Q psy9052 130 HGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHK---KNFGIETSNA 176 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~---k~F~I~~~~~ 176 (356)
....++|-|+.+||.+ +.. ..+..+++.+|+=++... +.|.-..+..
T Consensus 48 k~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~D~~d~r~FayIakd~ 100 (138)
T cd01268 48 KPVKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAPDRNFDRGFSYICRDG 100 (138)
T ss_pred CCCEEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEecCCCCCcEEEEEecCC
Confidence 4578999999999999 654 356788888888776654 4677666644
No 56
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.85 E-value=2.4e+02 Score=25.50 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=40.4
Q ss_pred CCCeEEEEeeccceEE-eCc--cceeeeecccccceeccC----ceEEEEEcCCCCceEEEEeCCH-HHHHHHH
Q psy9052 130 HGLETILGVTLKGIIV-SGT--NSSKFYKWAEIANVLNHK----KNFGIETSNADDHIVNFVFPDV-ESAKYVF 195 (356)
Q Consensus 130 ~~~~l~LGV~~~GI~V-~~~--~~~~~f~W~~I~~lsf~~----k~F~I~~~~~~~~~~~F~~~s~-~~AK~Lw 195 (356)
.+.++.|.|+.+||.+ +.+ +.+..++...|+-.+..+ +.|....++.++...+++|... ..|.-|.
T Consensus 73 ~~~~V~l~IS~~~v~~~~~~t~~ii~~H~l~~ISfaa~gd~d~~~~~ayIAKd~~~~r~ChVf~~~~~lAq~Ii 146 (160)
T cd01209 73 AGMPITINVSSSSLNLMAQDCKQIIANHHMQSISFASGGDPDTAEYVAYIAKNPDNQRACHVLECPEGLAQDLI 146 (160)
T ss_pred cCceEEEEEEeeEEEEeccCchhHHhcCCCcceEEEeCCCCCcceeEEEEEcCCCCCceeEEEEcCCchHHHHH
Confidence 5788999999999999 544 455777777776665322 3444444444444566666433 3444443
Done!