RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9052
(356 letters)
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 195 bits (497), Expect = 3e-60
Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 1 MYYVSGISL-ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERH 59
+Y + E+T++ FLQ+K I++ +I C + +V+LASY +QA++G+Y+ H
Sbjct: 100 KFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVH 159
Query: 60 TLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
+L L PK ++ + E + + ++ G ++ AE Y+ AQ L+ Y
Sbjct: 160 KRGFLAQEELLPKRVINL-YQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMY 218
Query: 120 GQETFLVKDEHGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSN 175
G F ++++ G E +LGV G+ + + + W EI N+ K F I+ +
Sbjct: 219 GVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLD 278
Query: 176 ADDHIVNFVFPDVESAKYVFRMCVHQHTFYM 206
+ F + K + ++C+ H +M
Sbjct: 279 KKIDVFKFNSSKLRVNKLILQLCIGNHDLFM 309
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 187 bits (475), Expect = 3e-57
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 6/211 (2%)
Query: 1 MYYVSGIS-LITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERH 59
+Y +S + ++T+ FLQ+K I+ I C + AV+LASY +Q+++G++N E H
Sbjct: 80 KFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH 139
Query: 60 TLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
YL L P+ ++E H ++ + + H G+ + A Y+ AQ L+ Y
Sbjct: 140 KSGYLAGDKLLPQRVLEQ-HKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMY 198
Query: 120 GQETFLVKDEHGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSN 175
G F +K++ G E LGV G+ + + W+EI N+ + K F I+ +
Sbjct: 199 GVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPID 258
Query: 176 ADDHIVNFVFPDVESAKYVFRMCVHQHTFYM 206
F P + K + +C+ H YM
Sbjct: 259 KKAPDFVFYAPRLRINKRILALCMGNHELYM 289
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 186 bits (474), Expect = 5e-57
Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 14/210 (6%)
Query: 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHT 60
+Y + +T+++TRY+ LQL+ DI+ GR+ C+ +L SY +Q+E G+Y+ E H
Sbjct: 95 KFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHG 154
Query: 61 LEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYG 120
++Y+ DF L P + L + V++ H + ++ A+ ++ A++L YG
Sbjct: 155 VDYVSDFKLAPNQ---------TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYG 205
Query: 121 QETFLVKDEHGLETILGVTLKGIIV-SGTNSSKFYKWAEIANVLNHKKNFGIETSNAD-- 177
+ KD G++ ILGV G++V + W ++ + + +F I+ +
Sbjct: 206 VDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQE 265
Query: 178 --DHIVNFVFPDVESAKYVFRMCVHQHTFY 205
+ + F P +AK ++++CV HTF+
Sbjct: 266 QYESTIGFKLPSYRAAKKLWKVCVEHHTFF 295
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 178 bits (451), Expect = 4e-51
Identities = 56/270 (20%), Positives = 110/270 (40%), Gaps = 6/270 (2%)
Query: 1 MYYVSGIS-LITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERH 59
+Y ++ + E+T +LQ+KN I+ I C + +V+LASY +QA G++N H
Sbjct: 83 KFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVH 142
Query: 60 TLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
+L + L P+ + + H E ++ G+ + A Y+ AQ L+ Y
Sbjct: 143 GPGFLANDRLLPQRVTDQ-HKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMY 201
Query: 120 GQETFLVKDEHGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIETSN 175
G F ++++ E LGV G+ + + W+EI N+ + + F I+ +
Sbjct: 202 GVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPID 261
Query: 176 ADDHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEATEEDNEGEVQNPRSSGGGNGRLFQN 235
F P V K + +C+ H YM + + +++ + +
Sbjct: 262 KKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQRE 321
Query: 236 IDTALLSSREELDEVTSPSMRNVMSNSREE 265
+++RE ++ + E
Sbjct: 322 KLQLEIAARERAEKKQQEYQDRLRQMQEEM 351
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 159 bits (403), Expect = 2e-47
Identities = 37/208 (17%), Positives = 81/208 (38%), Gaps = 18/208 (8%)
Query: 7 ISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKD 66
D + ++Q ++DI+ G + D A A + Q +FG +N ++H +L
Sbjct: 20 FQSSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDL 79
Query: 67 FALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQETFLV 126
PK+ V+ ++ + Q H +S+ A+ Y+ A+ L YG FLV
Sbjct: 80 KDFLPKEYVK-------QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLV 132
Query: 127 KDEHG-----LETILGVTLKGIIV---SGTNSSKFYKWAEIANVLNHKKNFGIETSNADD 178
K++ + +LG+T + ++ + + I K+F ++ + D
Sbjct: 133 KEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQD 192
Query: 179 HIVNFVFPDVESAKYVFRMCVHQHTFYM 206
+ + + + ++ +
Sbjct: 193 GYYSVQTTE---GEQIAQLIAGYIDIIL 217
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 160 bits (405), Expect = 5e-46
Identities = 38/213 (17%), Positives = 82/213 (38%), Gaps = 18/213 (8%)
Query: 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTL 61
+Y D + ++Q ++DI+ G + D A A + Q +FG +N ++H
Sbjct: 169 FYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKA 228
Query: 62 EYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQ 121
+L PK+ V+ ++ + Q H +S+ A+ Y+ A+ L YG
Sbjct: 229 GFLDLKDFLPKEYVK-------QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGV 281
Query: 122 ETFLVKDEHG-----LETILGVTLKGIIV---SGTNSSKFYKWAEIANVLNHKKNFGIET 173
FLVK++ + +LG+T + ++ + + I K+F ++
Sbjct: 282 SFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDF 341
Query: 174 SNADDHIVNFVFPDVESAKYVFRMCVHQHTFYM 206
+ D + + + ++ +
Sbjct: 342 GDYQDGYYSV---QTTEGEQIAQLIAGYIDIIL 371
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 143 bits (363), Expect = 9e-42
Identities = 37/213 (17%), Positives = 83/213 (38%), Gaps = 18/213 (8%)
Query: 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTL 61
+Y D + ++Q ++DI+ G + D A A Y Q +FG +N ++H
Sbjct: 4 FYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKP 63
Query: 62 EYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGYGQ 121
+L+ PK+ ++ ++ + H +S+ A+ Y+ A+ L YG
Sbjct: 64 GFLELKDFLPKEYIK-------QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGV 116
Query: 122 ETFLVKDEHG-----LETILGVTLKGIIV---SGTNSSKFYKWAEIANVLNHKKNFGIET 173
FLVK++ + +LG+T + ++ + + I K+F ++
Sbjct: 117 SFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDF 176
Query: 174 SNADDHIVNFVFPDVESAKYVFRMCVHQHTFYM 206
+ D + + + + ++ +
Sbjct: 177 GDYQDGYYSVQTTE---GEQIAQLIAGYIDIIL 206
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 119 bits (300), Expect = 3e-31
Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 18/192 (9%)
Query: 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHT 60
+ I D + F + + ++++G + LAS +Q +GNY S++H
Sbjct: 99 RLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHK 158
Query: 61 LEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEE-----YYILAAQQ 115
+L + L + T+ ++ ++ L + E ++ +
Sbjct: 159 QGFLNEENLKSI-VPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWE 217
Query: 116 LDGYGQETFLV--------KDEHGLETILGVTLKGIIV---SGTNSSKFYKWAEIA-NVL 163
+ YG F + + +GV +KG+ + K+ +
Sbjct: 218 IPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCFMWQLG 277
Query: 164 NHKKNFGIETSN 175
+ F I +
Sbjct: 278 DTDTCFQIHSME 289
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 93.0 bits (230), Expect = 3e-21
Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 23/225 (10%)
Query: 2 YYVSGIS--LITDEMTRYHCFLQLKNDIIEGRI-QCNLDDAVVLASYCMQAEFGNYNSER 58
Y L D T + + QL+ND ++ + + A+ L ++ F +
Sbjct: 118 YLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNA 177
Query: 59 ----HTLEYLKDFA----LFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYI 110
E L+ FPK + EN + + Q L + +
Sbjct: 178 LDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFRK---MIQQTFQQYASLREEECVMKFF 234
Query: 111 LAAQQLDGYGQETFLVKDEHG--LETILGVTLKGI---IVSGTNSSKFYKWAEIANVLNH 165
QET+ + G + L + KGI + ++ +I ++
Sbjct: 235 NTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKPTCLAEFKQIRSIRCL 294
Query: 166 KKNFGIETSN----ADDHIVNFVFPDVESAKYVFRMCVHQHTFYM 206
G ++ + A+ + +
Sbjct: 295 PLEEGQAVLQLGIEGAPQALSIKTSSLAEAENMADLIDGYCRLQG 339
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 84.6 bits (208), Expect = 4e-18
Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 25/210 (11%)
Query: 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNL-DDAVVLASYCMQAEFGNYNSERH 59
+ + D + + Q+ + G +C DD LAS ++G+
Sbjct: 355 EVFTPWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSEMILER 414
Query: 60 TLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGT-----AEEYYILAAQ 114
L + + P + N LE+ I H + + T E+ A
Sbjct: 415 LLSLVPTY--IPDREITPLKN--LEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARF 470
Query: 115 QLDGYGQETFLVKDE-----HGLETILGVTLKGIIV--SGTNSSKFYKWAEIANVLNHKK 167
+ + + I+ V G+ + EI V + +
Sbjct: 471 KWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLELSFPEIMAVSSSRG 530
Query: 168 NFGIETSNADDHIVNFVFPDVESAKYVFRM 197
+ +F ++ +Y F
Sbjct: 531 TKMMA--------PSFTLATIKGDEYTFTS 552
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 83.8 bits (206), Expect = 6e-18
Identities = 29/201 (14%), Positives = 66/201 (32%), Gaps = 32/201 (15%)
Query: 1 MYYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHT 60
++ ++ D + F Q +I G ++ VLA+ +Q G+Y
Sbjct: 306 YCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYTLHAAI 365
Query: 61 LEYLKDFA--------------------------LFPKDLVENGHNGLLERLTDAVIQQH 94
+ ++ + + +++ + ++I +
Sbjct: 366 PPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKW 425
Query: 95 SALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHG---LETILGVTLKGIIVSGTNSS 151
G++Q A Y+ ++ GYG F V+ + G E LGV+ + V
Sbjct: 426 RKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEG 485
Query: 152 K---FYKWAEIANVLNHKKNF 169
+ +++ I + N
Sbjct: 486 RPLEVFQYEHILSFGAPLANT 506
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 76.8 bits (188), Expect = 8e-16
Identities = 33/228 (14%), Positives = 74/228 (32%), Gaps = 28/228 (12%)
Query: 2 YYVSGIS--LITDEMTRYHCFLQLKNDIIEGRI-QCNLDDAVVLASYCMQAEFGNYNSER 58
Y G D+ T + Q+KND + Q + + A+ L ++ +G
Sbjct: 98 YLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNA 157
Query: 59 H----TLEYL-KDFAL---FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYI 110
E L KD L FPK L+++ L + + Q L++ + +
Sbjct: 158 LEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRK---LIQQTFRQFANLNREESILKFF 214
Query: 111 LAAQQLDGYGQETFLVK--DEHGLETILGVTLKG----IIVSGTNSSKFYKWAEIANV-- 162
+ + +E F + L + + + G N + + ++ +
Sbjct: 215 EILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQVQTIQY 274
Query: 163 -----LNHKKNFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQHTFY 205
+ K ++ + A + + P + A+ + +
Sbjct: 275 SNSEDKDRKGMLQLKIAGAPEPLT-VTAPSLTIAENMADLIDGYCRLV 321
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.7 bits (94), Expect = 1e-04
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 285 QDIDKLRSLLPSYRP--APDYETAIQQKYNAS 314
Q + KL++ L Y AP AI A+
Sbjct: 20 QALKKLQASLKLYADDSAP--ALAI----KAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 42/290 (14%), Positives = 77/290 (26%), Gaps = 107/290 (36%)
Query: 7 ISLI----TDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLE 62
+S+I D + + + + D + I+ +L+ VL + +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN---VLEPAEYR-------------K 373
Query: 63 YLKDFALFPKD----------------------LVENGHN-GLLER-------------- 85
++FP +V H L+E+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 86 ----LTDAVIQQHSALVGLSQGTAEEYYI--------LAAQQLDGYGQETF-------LV 126
+ H ++V + Y I L LD Y F L
Sbjct: 434 ELKVKLENEYALHRSIV-------DHYNIPKTFDSDDLIPPYLDQY----FYSHIGHHLK 482
Query: 127 KDEHGLETILGVTL---------KGIIVSGTNSSKFYKWAEIANVLNHKKNFGIETSNAD 177
EH L + K I T + L K + +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 178 DHIVN----FVF---PDVESAKYVFRMCVHQHTFYMTYEATEEDNEGEVQ 220
+ +VN F+ ++ +KY + + EA E+ +VQ
Sbjct: 542 ERLVNAILDFLPKIEENLICSKY---TDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 34.4 bits (78), Expect = 0.070
Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 44/164 (26%)
Query: 154 YKWAEIANVL--NHKKNF----------GIETSNADDHIVNFVFPDVESAKYVFRMCV-- 199
Y++ +I +V NF I + DHI+ D S +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLRLFWTLLS 73
Query: 200 -HQHTFYMTYEATEEDNEGEVQNPRSSGGGNGRLFQNIDTALLSSREELDEVTSPSMRNV 258
+ E N + +P + + ++++ R+
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKT--------EQRQPSMMTRMYI-------EQRDR 118
Query: 259 MSNSREELGDLN-ERTTSNLDLVDGNHQDIDKLRSLLPSYRPAP 301
+ N + N R Q KLR L RPA
Sbjct: 119 LYNDNQVFAKYNVSR-----------LQPYLKLRQALLELRPAK 151
Score = 30.6 bits (68), Expect = 1.0
Identities = 55/389 (14%), Positives = 104/389 (26%), Gaps = 118/389 (30%)
Query: 15 TRYHCFLQLKND----------IIEG-----------------RIQCNLDDAVVLASYCM 47
+R +L+L+ +I+G ++QC +D + +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--- 188
Query: 48 QAEFGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEE 107
N NS LE L+ LL ++ + +
Sbjct: 189 ---LKNCNSPETVLEMLQK---------------LLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 108 YYILAAQQLDGYGQETFLVKDEHGLETILGVTLKGIIVSGTNSSKFYKW-AEIANVLNHK 166
L + LV V A+ N N
Sbjct: 231 QAELRRLLKSKPYENCLLVLLN---------------V----------QNAKAWNAFNLS 265
Query: 167 KNFGIETSNADDHIVNFVFPDVESAKYVFRMCVHQHTFYMTYEATEEDNEG--------E 218
+ T + +F+ + + H T T ++ +
Sbjct: 266 CKILLTTRFKQ--VTDFLSAATTT---HISLDHHSMTL------TPDEVKSLLLKYLDCR 314
Query: 219 VQN-PRSSGGGNGRLFQNIDTAL---LSSREELDEVTSPSMRNVMSNSREELGDLNERTT 274
Q+ PR N R I ++ L++ + V + ++ +S L + E
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRK 373
Query: 275 SNLDLV----DGNHQDI-DKLRSLLPSYRPAPDYETAIQQKYNAS--EQQMYSSQPEIHS 327
L + I L SL+ D + + + S E+Q S I S
Sbjct: 374 MFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 328 --------FPDVTQHYGHRNVLHTYSTPD 348
+ HR+++ Y+ P
Sbjct: 431 IYLELKVKLENEYAL--HRSIVDHYNIPK 457
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.004
Identities = 68/491 (13%), Positives = 135/491 (27%), Gaps = 190/491 (38%)
Query: 4 VSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQ-------------AE 50
+ S TR L L + G ++ L Q
Sbjct: 1 MDAYS------TRP---LTLSH----GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG 47
Query: 51 FGNYNSERHTLEYLKDFALFPKDLVENGHNGLLERLTDAVIQQ-----------HSALVG 99
F + E + F + LVE G +++ + + + H+
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 100 L----------SQGTAEEYYILAAQQL------------------DG----Y----GQ-- 121
L ++ + Y A+ + +G GQ
Sbjct: 108 LLQENDTTLVKTKELIKNYI--TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 122 -ETFLVKDEHGLETI--------------LGVTLKGIIVSGTNSSKFY-------KWAE- 158
+ + +E L + TL +I + ++ K + +W E
Sbjct: 166 TDDYF--EE--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 159 ------------------------IANVLNHKKNFGIETSNADDHI--VNFVFPDVESAK 192
+A+ + K G ++ + +A
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 193 YV--------FRMCVHQHT---FYMTYEATEEDNEGEVQNPRSSGGGNGRLFQNIDTALL 241
+ F + V + F++ E P +S + ++L
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYE-------AYPNTS----------LPPSIL 324
Query: 242 SSREELDEVTSPS-MRNVMSNSREELGDLNERTTSNLD--------LVDGNHQDI----- 287
E +E PS M ++ + ++E++ D +T S+L LV+G +
Sbjct: 325 EDSLENNE-GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 288 DKLRSLLPSYR--PAPDYETAIQQKYNASEQQMYSSQPEI-HSFPDVTQHYGHRNVLHT- 343
L L + R AP Q + SE+ + + + F V + H+
Sbjct: 384 QSLYGLNLTLRKAKAPS--GLDQSRIPFSER-----KLKFSNRFLPVASPF------HSH 430
Query: 344 YSTPDLDKIKQ 354
P D I +
Sbjct: 431 LLVPASDLINK 441
Score = 35.8 bits (82), Expect = 0.027
Identities = 34/189 (17%), Positives = 54/189 (28%), Gaps = 67/189 (35%)
Query: 39 AVVLASYCMQAEFGNYNSERHTLEYLKDFALFPKDLVENGH-----------NGLLERLT 87
A+ L A F E LK L P D GH ++ +
Sbjct: 1735 ALTLMEK---AAF----------EDLKSKGLIPADATFAGHSLGEYAALASLADVMS-IE 1780
Query: 88 DAVIQQHSALV---GLSQGTAEE--------YYILA---AQQLDGYGQETF-LVKDEHGL 132
V +V G++ A Y ++A + + QE V + G
Sbjct: 1781 SLV-----EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 133 ETILGVTL-------KG--IIVSGTNSSKFYKWA--EIANVLNHKKNFGIETSNADDHIV 181
T G + + + +G A + NVLN K I+
Sbjct: 1836 RT--GWLVEIVNYNVENQQYVAAGDLR------ALDTVTNVLNFIKLQKIDIIELQ---K 1884
Query: 182 NFVFPDVES 190
+ +VE
Sbjct: 1885 SLSLEEVEG 1893
Score = 35.4 bits (81), Expect = 0.029
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 52/133 (39%)
Query: 59 HTLEYLKD-------------FALFPKDL---VENGHNG---------LLERLTDAVIQQ 93
H+ L + KD+ V + +G + ER+ D +I+
Sbjct: 428 HS-HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 94 H-----------SALVGLSQGTAEEYYILAAQQLDGYGQETFLVKDEHGLETILGVTLKG 142
+ ++ G A +L + DG G + I+ TL
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG-----------VRVIVAGTLD- 534
Query: 143 IIVSGTNSSKFYK 155
+ +K
Sbjct: 535 ---INPDDDYGFK 544
Score = 30.4 bits (68), Expect = 1.2
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 26/103 (25%)
Query: 189 ESAKYVF-RMCVHQHTFYMTYEATEEDNEGEVQ-NPRSS----GGGNGR---------LF 233
++A+ V+ R H F TY + D V NP + GG G+ +F
Sbjct: 1640 KAAQDVWNRADNH---FKDTYGFSILD---IVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 234 QNIDTALLSSREELDEVTSPSMRNVMSNSREELGDLNERTTSN 276
+ I L + + E+ + S + L L+ T
Sbjct: 1694 ETIVDGKLKTEKIFKEIN-EHSTSYTFRSEKGL--LSA--TQF 1731
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 31.4 bits (72), Expect = 0.46
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 299 PAPDY----ETAIQQKYNASEQQMYSSQPEIHS-FPDVTQHYG 336
+ Y I ++ SE ++SQPE+
Sbjct: 61 ESYAYGYFALKGIIPEWEWSE--NFASQPEMLRYVNRAADAMD 101
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 28.7 bits (65), Expect = 3.7
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 299 PAPDY----ETAIQQKYNASEQQMYSSQPEIHS-FPDVTQHYG 336
+ DY ++Q++N SE Y++QPEI + V +
Sbjct: 73 ESIDYSYSFSPELEQEWNWSE--KYATQPEILAYLEHVADRFD 113
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 28.3 bits (64), Expect = 4.3
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 299 PAPDY----ETAIQQKYNASEQQMYSSQPEIHS-FPDVTQHYG 336
+ Y + + Q+ Y +QPEI DV +
Sbjct: 61 ESHLYRFSFDRDLLQESTWKT--TYITQPEILEYLEDVVDRFD 101
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 28.3 bits (64), Expect = 4.6
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 299 PAPDY----ETAIQQKYNASEQQMYSSQPEIHS-FPDVTQHYG 336
+ +Y + Q++N +E Y+SQPEI V +
Sbjct: 68 ESIEYCYSFSEEVLQEWNWTE--RYASQPEILRYINFVADKFD 108
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor,
chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Length = 258
Score = 27.5 bits (60), Expect = 6.2
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 3/113 (2%)
Query: 216 EGEVQNPRSSGGGNGRLFQNIDTA---LLSSREELDEVTSPSMRNVMSNSREELGDLNER 272
EV + +Q I A LL R ++ + + + +L
Sbjct: 127 SQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALAD 186
Query: 273 TTSNLDLVDGNHQDIDKLRSLLPSYRPAPDYETAIQQKYNASEQQMYSSQPEI 325
T + + + + + + +YR A S +M +I
Sbjct: 187 TDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADI 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.381
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,412,768
Number of extensions: 320021
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 30
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)