RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9052
(356 letters)
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 109 bits (274), Expect = 3e-30
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ E+T++ FLQ+K I++ +I C + +V+LASY +QA++G+Y+ H +L L
Sbjct: 6 LVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEEL 65
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQL 116
PK ++ + E + + ++ G ++ AE Y+ AQ L
Sbjct: 66 LPKRVINL-YQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 104 bits (261), Expect = 2e-28
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 10 ITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDFAL 69
+ ++T+ FLQ+K I+ I C + AV+LASY +Q+++G++N E H YL L
Sbjct: 6 LIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKL 65
Query: 70 FPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQL 116
P+ ++E H ++ + + H G+ + A Y+ AQ L
Sbjct: 66 LPQRVLEQ-HKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL 111
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 101 bits (252), Expect = 3e-27
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 8 SLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDF 67
+ +T+++TRY+ LQL+ DI+ GR+ C+ +L SY +Q+E G+Y+ E H ++Y+ DF
Sbjct: 4 AQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDF 63
Query: 68 ALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
L P E L + V++ H + ++ A+ ++ A++L Y
Sbjct: 64 KLAPNQTKE---------LEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 96.9 bits (241), Expect = 2e-25
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 2 YYVSGISLITDEMTRYHCFLQLKNDIIEGRIQCNLDDAVVLASYCMQAEFGNYNSERHTL 61
+Y D + ++Q ++DI+ G + D A A Y Q +FG +N ++H
Sbjct: 4 FYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKP 63
Query: 62 EYLKDFALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
+L+ PK+ ++ ++ + H +S+ A+ Y+ A+ L Y
Sbjct: 64 GFLELKDFLPKEYIK-------QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 91.4 bits (227), Expect = 1e-23
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 117 DGYGQETFLVKDEHGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIE 172
+ YG F +K++ G E LGV G+ + + W+EI N+ + K F I+
Sbjct: 1 EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIK 60
Query: 173 TSNADDHIVNFVFPDVESAKYVFRMCVHQHTFYM 206
+ F P + K + +C+ H YM
Sbjct: 61 PIDKKAPDFVFYAPRLRINKRILALCMGNHELYM 94
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 89.1 bits (221), Expect = 9e-23
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 117 DGYGQETFLVKDEHGLETILGVTLKGIIV----SGTNSSKFYKWAEIANVLNHKKNFGIE 172
+ YG F ++++ G E +LGV G+ + + + W EI N+ K F I+
Sbjct: 1 EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIK 60
Query: 173 TSNADDHIVNFVFPDVESAKYVFRMCVHQHTFYM 206
+ + F + K + ++C+ H +M
Sbjct: 61 PLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFM 94
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 76.4 bits (188), Expect = 4e-18
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 120 GQETFLVKDEHGLETILGVTLKGIIV-SGTNSSKFYKWAEIANVLNHKKNFGIETSNAD- 177
G + KD G++ ILGV G++V + W ++ + + +F I+ +
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQ 60
Query: 178 ---DHIVNFVFPDVESAKYVFRMCVHQHTFY 205
+ + F P +AK ++++CV HTF+
Sbjct: 61 EQYESTIGFKLPSYRAAKKLWKVCVEHHTFF 91
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 57.8 bits (139), Expect = 4e-11
Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 9 LITDEMTRYHCFLQLKNDIIEGRI-QCNLDDAVVLASYCMQAEFGNYNSERHTLEYLKDF 67
D+ T + Q+KND + Q + + A+ L ++ +G + +
Sbjct: 7 FTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEV 66
Query: 68 --------ALFPKDLVENGHNGLLERLTDAVIQQHSALVGLSQGTAEEYYILAAQQLDGY 119
FPK L+++ L +L + Q L++ + + + +
Sbjct: 67 LEKDVGLRRFFPKSLLDSVKAKTLRKL---IQQTFRQFANLNREESILKFFEILSPVYRF 123
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 25.6 bits (56), Expect = 5.3
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 148 TNSSKFYKWAEIANVLNHKKNFGIETSNADDHIVNFVF-PDVESAKYVFRMCVHQHTF 204
++ K + ++G+ET D + F P+ + + +F + + F
Sbjct: 57 GVINRVEKIG--GASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMK-YAF 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.381
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,298,566
Number of extensions: 57699
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 10
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)