BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9053
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 OS=Mus musculus
GN=Arpc4 PE=1 SV=3
Length = 168
Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/168 (88%), Positives = 158/168 (94%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
M++TL PYL VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens
GN=ARPC4 PE=1 SV=3
Length = 168
Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/168 (88%), Positives = 158/168 (94%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
M++TL PYL VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|Q148J6|ARPC4_BOVIN Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4
PE=1 SV=3
Length = 168
Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/168 (88%), Positives = 158/168 (94%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
M++TL PYL VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4
OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1
Length = 169
Score = 280 bits (716), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/168 (77%), Positives = 154/168 (91%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
MS+TL PYL+ VRHTL AA+CLE FSSQVVERHNKPEVEV+TSKELL+TPV+++RN++E+
Sbjct: 1 MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQER 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
VLIE S+NSVRISIA+KQ+DEIEKILCHKF RFM RA+NF VLRRKP+ GYDISFLIT
Sbjct: 61 VLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITA 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
HTE M+KHKLVDF+LHFM+EIDKEISEMKL++NARAR+ +EEFLKRF
Sbjct: 121 SHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168
>sp|O96625|ARPC4_DICDI Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium
discoideum GN=arcD PE=1 SV=1
Length = 169
Score = 253 bits (647), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 111/168 (66%), Positives = 147/168 (87%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
MS+ +PYL +R+TL A+MCL+NF SQ+VERHNKPEVEV+TSKEL+L PV+I+RN+ E+
Sbjct: 1 MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNER 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
VLIE SINS+RIS+++K++DE++ IL KF+RF+ RAENFI+LRRKP+EGYDISFL+TN
Sbjct: 61 VLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
FHTE M+KHKLVDF++ FME+ID+EIS++KL +NAR RI + E+LK F
Sbjct: 121 FHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168
>sp|Q92352|ARPC4_SCHPO Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1
Length = 168
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 138/168 (82%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
MS+TL PYL VR TL A++ LE FSS++VER ++PEVEV S E+LL P+++SRNE+E+
Sbjct: 1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
LIE S+NSVR SI +KQ DEIE+IL KFM+F+M RAE+F +LRRKP++GYDISFLITN
Sbjct: 61 CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
+HTE+M KHKLVDF++ FMEE+D EISEMKL +N RAR+ +E +L F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>sp|P33204|ARPC4_YEAST Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC19 PE=1
SV=2
Length = 171
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/169 (65%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEV-RTSKELLLTPVLISRNEKE 59
MS +L PYL VR++L AA+ L NFSSQ VERHN+PEVEV TS ELLL P+ ISRNE E
Sbjct: 1 MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENE 60
Query: 60 KVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLIT 119
+VLIE S+NSVR+S+ VKQADEIE+IL HKF RF+ RAE F +LRR PI GY ISFLIT
Sbjct: 61 QVLIEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLIT 120
Query: 120 NFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
N HTE M KLVDF++ FME++DKEISE+KL +NARAR +E +L F
Sbjct: 121 NKHTESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEF 169
>sp|Q9J559|P4A_FOWPN Major core protein 4a precursor OS=Fowlpox virus (strain NVSL)
GN=FPV174 PE=3 SV=1
Length = 891
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 47 LLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRF 93
L+T L RN K+ I +I + I+ KQ D I+KI CH M F
Sbjct: 725 LITNALKDRNMKDSNFIATNILNSITQISEKQMDGIKKITCHGTMMF 771
>sp|B4PRE2|DGKH_DROYA Diacylglycerol kinase eta OS=Drosophila yakuba GN=GE24946 PE=3 SV=2
Length = 1917
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Query: 13 RHTLNAAMCLENFSSQVVERH----NKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSIN 68
R+ + L+ +S V E+ P++ + T +E +LT ++ S N + ++E S
Sbjct: 467 RYESASTKMLDRWSIMVFEKAIPVPKTPKMSISTEQEAMLTGMVTSANHHLRFIVETSDT 526
Query: 69 SVRISIAVKQADEIEKILC-----HKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHT 123
IS D ++ ++C HK + ++ E +LR+K ++ L+
Sbjct: 527 QTLISSTRNLCDTVDDLVCRISEHHKDDEQLAVKCE---ILRQK------LNMLLDALQE 577
Query: 124 EQMYKHKLVDFVLHFMEEIDKEI 146
E+M H D + I + I
Sbjct: 578 EEMGAHSGDDLIATIRSLIARSI 600
>sp|Q8ZTQ7|SAHH_PYRAE Adenosylhomocysteinase OS=Pyrobaculum aerophilum (strain ATCC 51768
/ IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=ahcY PE=3
SV=1
Length = 437
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 100 NFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKL 151
N + P E D+SF E + K+KL V +EID+E++ +KL
Sbjct: 361 NLVAAEGHPSEVMDLSFANQALAAEFLAKNKLSVDVYKLPDEIDREVARLKL 412
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,619,125
Number of Sequences: 539616
Number of extensions: 1875690
Number of successful extensions: 7481
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7457
Number of HSP's gapped (non-prelim): 43
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)