Query psy9053
Match_columns 168
No_of_seqs 92 out of 94
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 17:45:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00278 ARP2/3 complex subuni 100.0 9E-103 2E-107 635.8 16.3 168 1-168 1-172 (174)
2 PF05856 ARPC4: ARP2/3 complex 100.0 7E-103 1E-107 635.2 13.0 168 1-168 1-170 (170)
3 KOG1876|consensus 100.0 7.6E-96 2E-100 588.1 13.1 168 1-168 1-168 (168)
4 PF04045 P34-Arc: Arp2/3 compl 85.8 19 0.00041 31.3 11.5 120 48-167 91-232 (241)
5 PF14506 CppA_N: CppA N-termin 72.6 4 8.6E-05 32.8 3.0 36 54-89 38-84 (125)
6 KOG2826|consensus 70.1 14 0.0003 33.3 6.0 65 70-152 55-119 (301)
7 PTZ00040 translation initiatio 53.6 24 0.00052 30.6 4.5 43 68-114 183-227 (233)
8 PF04045 P34-Arc: Arp2/3 compl 42.7 12 0.00025 32.6 0.9 42 72-123 2-48 (241)
9 KOG2826|consensus 42.0 1.4E+02 0.003 27.1 7.5 116 51-167 142-277 (301)
10 PF08581 Tup_N: Tup N-terminal 31.7 83 0.0018 23.1 3.8 34 125-158 42-78 (79)
11 PF14065 DUF4255: Protein of u 31.4 41 0.00089 26.2 2.3 73 65-142 36-108 (179)
12 PF04592 SelP_N: Selenoprotein 28.8 25 0.00055 30.9 0.8 13 110-122 58-71 (238)
13 PF15382 DUF4609: Domain of un 27.5 61 0.0013 23.8 2.4 34 35-68 2-36 (70)
14 PF10398 DUF2443: Protein of u 26.8 99 0.0021 23.3 3.5 34 125-158 24-71 (79)
15 PF01397 Terpene_synth: Terpen 24.5 15 0.00032 30.4 -1.3 42 71-115 58-108 (183)
16 PF03158 DUF249: Multigene fam 24.2 28 0.00061 29.8 0.2 30 110-140 135-164 (192)
17 PF14792 DNA_pol_B_palm: DNA p 22.9 44 0.00096 25.1 1.1 21 105-126 35-55 (112)
18 PF13078 DUF3942: Protein of u 21.4 1.1E+02 0.0023 24.8 3.0 30 118-147 12-41 (126)
19 TIGR02697 WPE_wolbac Wolbachia 20.7 54 0.0012 21.4 1.0 23 107-129 2-25 (36)
No 1
>PTZ00278 ARP2/3 complex subunit; Provisional
Probab=100.00 E-value=9e-103 Score=635.79 Aligned_cols=168 Identities=63% Similarity=1.033 Sum_probs=167.2
Q ss_pred CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceec----cCCcccccccEEEeecCCceEEEecccceEEEEEEe
Q psy9053 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEV----RTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAV 76 (168)
Q Consensus 1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~----~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~i 76 (168)
||+|+||||+|||+||+|||||+|||||+||||||||||+ ++|+|+||+|++|+||++|+||||||||||||||||
T Consensus 1 Ms~~l~pYl~aVr~tL~aAlcL~nF~Sq~vErhnkPEVE~~~~~~ts~elLl~pl~I~Rne~E~clIE~SiNSvRiSi~i 80 (174)
T PTZ00278 1 MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELNGYEGKSKELVLNPIYIVRSEKEKCLIEPSINSVRISFSF 80 (174)
T ss_pred CCcccchHHHHHHHHHHHHHHHhcCchHHHhccCCCcEEecCCCCCCHHHhcCcEEEEEcCCceEEEEcccceEEEEEEe
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eccchHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy9053 77 KQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNAR 156 (168)
Q Consensus 77 kq~DeiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naR 156 (168)
||+||||+||+|||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|
T Consensus 81 kqaDeie~iL~~kf~~Fl~~RAe~F~ILRrkPv~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaR 160 (174)
T PTZ00278 81 KKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTR 160 (174)
T ss_pred hhhChHHHHHHHHHHHHHHhhhhceeEEeecCcCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcC
Q psy9053 157 ARICSEEFLKRF 168 (168)
Q Consensus 157 aR~~A~~fl~~~ 168 (168)
||+||++||++|
T Consensus 161 aR~~A~~fl~~f 172 (174)
T PTZ00278 161 ARIAAPEFFKAL 172 (174)
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 2
>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....
Probab=100.00 E-value=6.8e-103 Score=635.19 Aligned_cols=168 Identities=79% Similarity=1.185 Sum_probs=139.8
Q ss_pred CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceecc--CCcccccccEEEeecCCceEEEecccceEEEEEEeec
Q psy9053 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVR--TSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQ 78 (168)
Q Consensus 1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~--~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq 78 (168)
||+||+|||+|||+||+|||||+|||||+||||||||||++ +|||+||||++|+||++|+||||||||||||||+|||
T Consensus 1 Ms~tl~pYl~~Vr~tL~aalcL~nf~sq~vErhnkPEVE~~~~~s~elll~pl~I~Rne~E~clIE~SiNSvRvSi~ikq 80 (170)
T PF05856_consen 1 MSATLRPYLDAVRRTLTAALCLQNFPSQVVERHNKPEVEVQGPSSKELLLNPLVISRNEKEKCLIEPSINSVRVSIKIKQ 80 (170)
T ss_dssp --TSHHHHHHHHHHHHHHHT-------SSSTT----HHHH-----CCCB---EEEESSSS-EEEEEEBSSEEEEEEE---
T ss_pred CCcchhhHHHHHHHHHHHHHHHhhCchhhhhhcCCCceeecCCCCHHHhcCceeeccCCCceEEEEcccceEEEEEEecc
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy9053 79 ADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARAR 158 (168)
Q Consensus 79 ~DeiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR 158 (168)
+||||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|||
T Consensus 81 ~Deie~iL~~kf~rFl~~RAe~F~ILRRkPv~GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR 160 (170)
T PF05856_consen 81 ADEIERILCHKFTRFLMQRAENFFILRRKPVEGYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARAR 160 (170)
T ss_dssp -SCHHHHHHHHHHHHHHHCTTTSTTB-SS--TTSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cChHHHHHHHHHHHHHHhhhhhheeeeecCcCCCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy9053 159 ICSEEFLKRF 168 (168)
Q Consensus 159 ~~A~~fl~~~ 168 (168)
++|++||++|
T Consensus 161 ~~A~~fl~~f 170 (170)
T PF05856_consen 161 IVAEEFLKQF 170 (170)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHhcC
Confidence 9999999987
No 3
>KOG1876|consensus
Probab=100.00 E-value=7.6e-96 Score=588.11 Aligned_cols=168 Identities=83% Similarity=1.224 Sum_probs=167.1
Q ss_pred CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEecccceEEEEEEeeccc
Q psy9053 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQAD 80 (168)
Q Consensus 1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~D 80 (168)
||+||+|||.+||.||+|||||+|||||+||||||||||+++|+|+|++|++|||||+|+||||||||||||||++||+|
T Consensus 1 ms~tl~pyl~avr~tl~aal~L~nFssq~VERhnkPEVEv~ss~elll~pv~isRNe~Ek~LIE~SiNSvRiSi~vKQaD 80 (168)
T KOG1876|consen 1 MSATLRPYLTAVRHTLTAALCLENFSSQEVERHNKPEVEVKSSKELLLTPVVISRNEQEKVLIEPSINSVRISIAVKQAD 80 (168)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHhCCHHHHHhcCCCcceecCcHHHhhCceEeecccccceeEecccceEEEEEeecchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9053 81 EIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARIC 160 (168)
Q Consensus 81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~ 160 (168)
|||+||||||+||||||||+|+|||||||+||||||||||+|+|+|+||||+||+|+|||++|||||+|||++|+|||.+
T Consensus 81 EiE~IL~~KF~rFl~~RAe~F~iLRRkPv~gy~IsfLItn~hte~m~k~Klvdf~iefmeeidkeiSemkl~~n~rar~~ 160 (168)
T KOG1876|consen 81 EIERILCHKFTRFLMMRAEAFFILRRKPVQGYDISFLITNFHTEQMYKHKLVDFIIEFMEEIDKEISEMKLFLNARARQV 160 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeeeeCCcCccchhhhhhccchHHHHhchhHHHHHHHHHHHhhhhhhhccccchhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy9053 161 SEEFLKRF 168 (168)
Q Consensus 161 A~~fl~~~ 168 (168)
|++|++.|
T Consensus 161 ae~fl~~F 168 (168)
T KOG1876|consen 161 AEEFLKRF 168 (168)
T ss_pred HHHHHhcC
Confidence 99999976
No 4
>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....
Probab=85.78 E-value=19 Score=31.32 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=94.3
Q ss_pred cccEEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHhh-c-c---cceeeeeeC---CcC---------
Q psy9053 48 LTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMM-R-A---ENFIVLRRK---PIE--------- 110 (168)
Q Consensus 48 l~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~~-R-A---e~f~ILRrk---Pv~--------- 110 (168)
-.|+.|-..++|-++|.++=+.|=|-+.+.-.|+-++++.+-|+.=+.. | + .+=++|... |.+
T Consensus 91 ~~~~~i~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~APqvlfS~~~PPlEl~~~~~~~~ 170 (241)
T PF04045_consen 91 EKPAVIHYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSRQTAPQVLFSHREPPLELRGVPGARN 170 (241)
T ss_dssp TT-EEEEECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT--TTS-EEEEECSS--CGGTT-TT---
T ss_pred CceEEEEeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccCCCCCceeccCCCCChhHcCCCCccc
Confidence 4678888888999999999999999999999999999999999876631 1 1 234555543 322
Q ss_pred ----ccceeeeeehhH-HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Q psy9053 111 ----GYDISFLITNFH-TEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKR 167 (168)
Q Consensus 111 ----GYDISFLITn~H-~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~~ 167 (168)
+.=|||.+.-.| ++.=...+-|+.|..|=.-+-=-|.--|--+-+|=|.=.++|++-
T Consensus 171 ~~~n~gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lkv 232 (241)
T PF04045_consen 171 LGDNVGYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLKV 232 (241)
T ss_dssp -STTEEEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 233899999999 667778889999999999888888888988999988888888763
No 5
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=72.63 E-value=4 Score=32.83 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=26.7
Q ss_pred eecCCceEEEec--ccce---------EEEEEEeeccchHHHHHHHH
Q psy9053 54 SRNEKEKVLIEG--SINS---------VRISIAVKQADEIEKILCHK 89 (168)
Q Consensus 54 ~Rne~E~~lIE~--SiNS---------vRVSi~ikq~DeiE~iL~~k 89 (168)
.++..|+.+||- |..+ -|+.|++-+++|||.+|++.
T Consensus 38 ~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe~LLar~ 84 (125)
T PF14506_consen 38 DQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIEALLARG 84 (125)
T ss_dssp -TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHHHHHHC-
T ss_pred CCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHHHHHhcc
Confidence 468889999994 4554 48999999999999999874
No 6
>KOG2826|consensus
Probab=70.11 E-value=14 Score=33.32 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=36.5
Q ss_pred EEEEEEeeccchHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q psy9053 70 VRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEM 149 (168)
Q Consensus 70 vRVSi~ikq~DeiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsem 149 (168)
+++||+.|---|+-.-=.-..++++. + -++.-|-+|||+|-||+-..+=+ . -+.+-+.|+-+
T Consensus 55 illSislK~y~elq~~Ga~~LLk~~y---g---~~~~epE~Gyn~slli~L~~lpa---~---------~~~l~~~i~~l 116 (301)
T KOG2826|consen 55 ILLSISLKFYKELQLHGADDLLKRVY---G---SYLSEPEPGYNVSLLIDLAELPA---D---------KESLAKTISLL 116 (301)
T ss_pred EEEEEehhhHHHHHHcCHHHHHHHHh---c---cccCCCCCCccEEEEEEHHhCch---h---------HHHHHHHHHHh
Confidence 46777775444432222222222222 2 35678999999999998765321 1 34555666766
Q ss_pred hhh
Q psy9053 150 KLA 152 (168)
Q Consensus 150 Kl~ 152 (168)
|.+
T Consensus 117 krn 119 (301)
T KOG2826|consen 117 KRN 119 (301)
T ss_pred hhh
Confidence 654
No 7
>PTZ00040 translation initiation factor E4; Provisional
Probab=53.61 E-value=24 Score=30.62 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=33.9
Q ss_pred ceEEEEEEeeccchHHH--HHHHHHHHHHhhcccceeeeeeCCcCccce
Q psy9053 68 NSVRISIAVKQADEIEK--ILCHKFMRFMMMRAENFIVLRRKPIEGYDI 114 (168)
Q Consensus 68 NSvRVSi~ikq~DeiE~--iL~~kf~rFl~~RAe~f~ILRrkPv~GYDI 114 (168)
+..|+|||++.+++=+. -|++++.+-|.++.|-+.|- | +-||+
T Consensus 183 ~~~rIsIW~~~~~d~~~~~~i~~~i~~~l~~~l~~~~~~---~-~~~~~ 227 (233)
T PTZ00040 183 GVIRIEIWFTNLGDQSDRNQLMKEIETCMARRLDGSSGF---P-PKFDL 227 (233)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHhcCcceec---C-Cccee
Confidence 56899999999876443 47999999999999998775 3 55553
No 8
>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....
Probab=42.68 E-value=12 Score=32.62 Aligned_cols=42 Identities=24% Similarity=0.452 Sum_probs=25.7
Q ss_pred EEEEeeccchHH-----HHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHH
Q psy9053 72 ISIAVKQADEIE-----KILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHT 123 (168)
Q Consensus 72 VSi~ikq~DeiE-----~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~ 123 (168)
|||.+|--+||. ..|.++|-.++. -.|=+|||+|.+|.-..+
T Consensus 2 vSi~~~~~~~l~~~G~~e~l~~~Yg~~~~----------~~pe~Gy~~tL~idl~~l 48 (241)
T PF04045_consen 2 VSISLKCWKELQQYGAEEYLKREYGSYVQ----------TPPESGYDVTLVIDLEKL 48 (241)
T ss_dssp EEEE-TTHHHHHTTTHHHHHHHHCCCCE-----------ES--TTSSEEEEEETTS-
T ss_pred eEEEechHHHHHHcCHHHHHHHhcccccc----------CCCCCCccEEEEEEcccC
Confidence 688887777654 444444433332 678899999999987754
No 9
>KOG2826|consensus
Probab=42.01 E-value=1.4e+02 Score=27.13 Aligned_cols=116 Identities=24% Similarity=0.398 Sum_probs=88.7
Q ss_pred EEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHh--hcc-----cceeeeeeCCcC-------------
Q psy9053 51 VLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMM--MRA-----ENFIVLRRKPIE------------- 110 (168)
Q Consensus 51 l~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~--~RA-----e~f~ILRrkPv~------------- 110 (168)
.+|---..|-.+|||+=+-|-|-+.-..-||=+.|+-+-|+.=+- .|| .-++-.|-.|.+
T Consensus 142 ~~I~YRddEti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra~qtAPqVLfShrePPLElkd~~~~~vgdn~ 221 (301)
T KOG2826|consen 142 AVIHYRDDETIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRASQTAPQVLFSHREPPLELKDLYDARVGDNI 221 (301)
T ss_pred eEEEeccCceEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhhhccccHHHhhcCCCCchhhhcCCccccccc
Confidence 555555679999999999999988888888888888888875432 222 223334556655
Q ss_pred ccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Q psy9053 111 GYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKR 167 (168)
Q Consensus 111 GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~~ 167 (168)
|| |+|..--.|+-.=.+..-|+.|-.|-.-.-=-|.--|.-+-+|-|+--..|+|-
T Consensus 222 gy-iTFVLFpRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dFlKV 277 (301)
T KOG2826|consen 222 GY-ITFVLFPRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDFLKV 277 (301)
T ss_pred ce-EEEEEecccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHH
Confidence 53 788999999998888999999999988887777777888888888888888763
No 10
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.73 E-value=83 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=29.6
Q ss_pred HhhhhHHHHHHHHHHH---HHHHHHhhhhhhhhhhhh
Q psy9053 125 QMYKHKLVDFVLHFME---EIDKEISEMKLAVNARAR 158 (168)
Q Consensus 125 ~m~k~kLidFIi~Fme---eidkeIsemKl~~naRaR 158 (168)
++.|+++.+.=-++.. .-+.||+.+|..+.+||+
T Consensus 42 ~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 42 QQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5788999998888875 678899999999999987
No 11
>PF14065 DUF4255: Protein of unknown function (DUF4255)
Probab=31.37 E-value=41 Score=26.22 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=50.0
Q ss_pred cccceEEEEEEeeccchHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHH
Q psy9053 65 GSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEI 142 (168)
Q Consensus 65 ~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~Fmeei 142 (168)
...+.-+|++.+.+..| |..+.+.... -.+..... ++.|---.|.+||||....-....|++.--+++|..+-
T Consensus 36 ~~~~~~~l~l~Ly~i~e-~~~~r~~~~~--~~~~~~~~--~~~ppl~l~L~yLvta~~~~~~~~~~~Lg~vi~~l~~~ 108 (179)
T PF14065_consen 36 SSPTDPTLNLFLYNIEE-NPTLRNSPPY--PRRNGDGT--RRRPPLPLNLHYLVTAWAENYEEELRLLGRVIQFLQDH 108 (179)
T ss_pred ccCCCCEEEEEEEEeEE-cccccCCCCc--cccCCCCc--ccCCCeEEEEEEEEEeCCCCchHHHHHHHHHHHHHHhC
Confidence 34567788898888765 2222222211 22222233 67777789999999999777778899999999998753
No 12
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=28.77 E-value=25 Score=30.88 Aligned_cols=13 Identities=46% Similarity=0.933 Sum_probs=12.0
Q ss_pred Ccc-ceeeeeehhH
Q psy9053 110 EGY-DISFLITNFH 122 (168)
Q Consensus 110 ~GY-DISFLITn~H 122 (168)
+|| ||||+|-|.+
T Consensus 58 ~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 58 EGLSNISFMVVNHQ 71 (238)
T ss_pred CCCCceEEEEEcCC
Confidence 699 9999999977
No 13
>PF15382 DUF4609: Domain of unknown function (DUF4609)
Probab=27.48 E-value=61 Score=23.84 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=26.0
Q ss_pred cCceeccCCc-ccccccEEEeecCCceEEEecccc
Q psy9053 35 KPEVEVRTSK-ELLLTPVLISRNEKEKVLIEGSIN 68 (168)
Q Consensus 35 kPEVE~~~s~-elLl~Pl~I~Rne~E~~lIE~SiN 68 (168)
||+|-.++|+ .....-++|.|-++|-..==+|+.
T Consensus 2 kpd~kqksskkk~viPqIiITraS~ETL~S~ss~~ 36 (70)
T PF15382_consen 2 KPDVKQKSSKKKVVIPQIIITRASNETLISYSSSG 36 (70)
T ss_pred CcchhhhccccccccceEEEEecCccceeeccCCC
Confidence 7999888885 566677999999999876555543
No 14
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=26.75 E-value=99 Score=23.26 Aligned_cols=34 Identities=29% Similarity=0.638 Sum_probs=26.4
Q ss_pred HhhhhHHHHHHH--------------HHHHHHHHHHhhhhhhhhhhhh
Q psy9053 125 QMYKHKLVDFVL--------------HFMEEIDKEISEMKLAVNARAR 158 (168)
Q Consensus 125 ~m~k~kLidFIi--------------~FmeeidkeIsemKl~~naRaR 158 (168)
.|-|-.|+|||. .|.+.||.|++++|=.+||=-+
T Consensus 24 ~~AkiSl~DyImiKRGS~DmPe~l~~~~~~QideeV~~LKe~IdaLNK 71 (79)
T PF10398_consen 24 KIAKISLVDYIMIKRGSQDMPEHLNMAFLAQIDEEVEKLKEHIDALNK 71 (79)
T ss_dssp HHHT--HHHHHHHHTTSS---TTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHhcccCCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888885 6899999999999999887554
No 15
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=24.46 E-value=15 Score=30.38 Aligned_cols=42 Identities=33% Similarity=0.477 Sum_probs=28.8
Q ss_pred EEEEEeeccchHHHHHHHHHHHHHhhc---------ccceeeeeeCCcCcccee
Q psy9053 71 RISIAVKQADEIEKILCHKFMRFMMMR---------AENFIVLRRKPIEGYDIS 115 (168)
Q Consensus 71 RVSi~ikq~DeiE~iL~~kf~rFl~~R---------Ae~f~ILRrkPv~GYDIS 115 (168)
|..|.=+.-+||+.+|.+-|..+.... |=.|.+||. .||+||
T Consensus 58 RLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRq---hGy~VS 108 (183)
T PF01397_consen 58 RLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQ---HGYYVS 108 (183)
T ss_dssp HTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHH---TT----
T ss_pred HcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHH---cCCccc
Confidence 444555677899999999998877666 346888886 799998
No 16
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=24.17 E-value=28 Score=29.82 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=27.4
Q ss_pred CccceeeeeehhHHHHhhhhHHHHHHHHHHH
Q psy9053 110 EGYDISFLITNFHTEQMYKHKLVDFVLHFME 140 (168)
Q Consensus 110 ~GYDISFLITn~H~e~m~k~kLidFIi~Fme 140 (168)
.+.|..+|+| .|+|.--..|+.+|+++=.+
T Consensus 135 ~~~d~~~ll~-~hl~~a~~kgll~F~letlk 164 (192)
T PF03158_consen 135 HNEDPTSLLT-QHLEKAAAKGLLPFVLETLK 164 (192)
T ss_pred cccCHHHHHH-HHHHHHHHCCCHHHHHHHHH
Confidence 6889999999 99999999999999987766
No 17
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=22.92 E-value=44 Score=25.11 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=16.0
Q ss_pred eeCCcCccceeeeeehhHHHHh
Q psy9053 105 RRKPIEGYDISFLITNFHTEQM 126 (168)
Q Consensus 105 RrkPv~GYDISFLITn~H~e~m 126 (168)
|.||--| ||-+|||+......
T Consensus 35 RGK~~~g-DiDiLIt~~~~~~~ 55 (112)
T PF14792_consen 35 RGKETSG-DIDILITHPDPSSV 55 (112)
T ss_dssp TT-SEES-SEEEEEEETTCSTT
T ss_pred cCCCcCC-CeEEEEeCCCcCcc
Confidence 6666555 99999999987775
No 18
>PF13078 DUF3942: Protein of unknown function (DUF3942)
Probab=21.45 E-value=1.1e+02 Score=24.83 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=27.2
Q ss_pred eehhHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy9053 118 ITNFHTEQMYKHKLVDFVLHFMEEIDKEIS 147 (168)
Q Consensus 118 ITn~H~e~m~k~kLidFIi~FmeeidkeIs 147 (168)
+++.|-|++.|.|-=|.|.+.|-.+|-+|-
T Consensus 12 l~~d~eEKii~e~~~dvi~~~~~kle~~i~ 41 (126)
T PF13078_consen 12 LEEDKEEKIIKEKHNDVIFPYLKKLENEIG 41 (126)
T ss_pred hcchhhHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999997653
No 19
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=20.66 E-value=54 Score=21.45 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=18.2
Q ss_pred CCcCcc-ceeeeeehhHHHHhhhh
Q psy9053 107 KPIEGY-DISFLITNFHTEQMYKH 129 (168)
Q Consensus 107 kPv~GY-DISFLITn~H~e~m~k~ 129 (168)
.||++| |=-=||+|.|+-+|++.
T Consensus 2 IPV~~hwDp~~li~n~~~~~l~nk 25 (36)
T TIGR02697 2 IPVPRHWDPENLIANERIRQLYNK 25 (36)
T ss_pred cccccccCcchhhhhHHHHHHhcc
Confidence 367654 77889999999999874
Done!