Query psy9053
Match_columns 168
No_of_seqs 92 out of 94
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 17:45:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_F Actin-related protein 2 100.0 5E-105 2E-109 644.9 15.2 168 1-168 1-168 (168)
2 1k8k_F P20, ARP2/3 complex 20 100.0 1E-104 4E-109 643.3 15.4 168 1-168 1-168 (168)
3 3dwl_D Actin-related protein 2 85.4 10 0.00034 33.2 11.2 118 49-166 155-293 (317)
4 1k8k_D P34, ARP2/3 complex 34 81.2 26 0.0009 30.3 12.8 118 49-166 140-275 (300)
5 1k8k_D P34, ARP2/3 complex 34 47.6 17 0.00059 31.4 4.0 43 69-122 54-101 (300)
6 2c5k_T Syntaxin TLG1, T-snare 36.1 18 0.00062 26.0 2.0 20 137-156 75-94 (95)
7 2jpp_A Translational repressor 28.7 55 0.0019 22.9 3.4 17 51-67 2-18 (70)
8 1lme_A PDF, peptide deformylas 28.5 62 0.0021 25.7 4.1 64 4-67 37-100 (176)
9 3o6q_B Stage II sporulation pr 22.8 63 0.0022 21.9 2.7 29 96-129 12-43 (56)
10 1zke_A Hypothetical protein HP 22.5 48 0.0017 24.0 2.2 34 125-158 26-73 (83)
11 4fyk_A Deoxyribonucleoside 5'- 21.5 20 0.00069 27.8 0.0 47 49-95 95-145 (152)
No 1
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-105 Score=644.88 Aligned_cols=168 Identities=64% Similarity=1.019 Sum_probs=165.5
Q ss_pred CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEecccceEEEEEEeeccc
Q psy9053 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQAD 80 (168)
Q Consensus 1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~D 80 (168)
||+||||||+|||+||+|||||+|||||+||||||||||+++|||+||||++|+||++|+||||||||||||||+|||+|
T Consensus 1 Ma~tl~pYl~~Vr~tL~aAlcl~nF~Sq~vErhnkPEVE~~~s~elll~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaD 80 (168)
T 3dwl_F 1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVD 80 (168)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCCCCCCSSSTTCCCCHHHHCCCTTTBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCS
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcCchHHHhhcCCCceeccCCHhHhcCceEEeecCCceEEEEcccceEEEEEEehhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9053 81 EIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARIC 160 (168)
Q Consensus 81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~ 160 (168)
|||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|||+|
T Consensus 81 eie~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~ 160 (168)
T 3dwl_F 81 EIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLV 160 (168)
T ss_dssp SHHHHHHHHHHHHHGGGTTTSTTBCSSCCTTCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccceEEeeeCCcCCcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy9053 161 SEEFLKRF 168 (168)
Q Consensus 161 A~~fl~~~ 168 (168)
|++||++|
T Consensus 161 A~~fl~~f 168 (168)
T 3dwl_F 161 AETYLSCF 168 (168)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99999987
No 2
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=100.00 E-value=1.1e-104 Score=643.31 Aligned_cols=168 Identities=88% Similarity=1.281 Sum_probs=165.7
Q ss_pred CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEecccceEEEEEEeeccc
Q psy9053 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQAD 80 (168)
Q Consensus 1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~D 80 (168)
||+||||||+|||+||+|||||+|||||+||||||||||+++|||+||||++|+||++|+||||||||||||||||||+|
T Consensus 1 Ma~tl~pYl~~vr~tL~aAlCL~nF~Sq~vErhnkPEVE~~~s~elLl~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~D 80 (168)
T 1k8k_F 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQAD 80 (168)
T ss_dssp -CCSHHHHHHHHHHHHHHHCCCCCCCCSSSTTCCCCHHHHCCCGGGBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCS
T ss_pred CCcccchHHHHHHHHHHHHHHHhcCcHHHHhhcCCCceeecCCHHHhccceEEEecCCceEEEEcccceEEEEEEEcccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9053 81 EIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARIC 160 (168)
Q Consensus 81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~ 160 (168)
|||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|||+|
T Consensus 81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~ 160 (168)
T 1k8k_F 81 EIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIV 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccceEEeeeCCcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy9053 161 SEEFLKRF 168 (168)
Q Consensus 161 A~~fl~~~ 168 (168)
|++||++|
T Consensus 161 A~~fl~~f 168 (168)
T 1k8k_F 161 AEEFLKNF 168 (168)
T ss_dssp HHHHHTC-
T ss_pred HHHHhhcC
Confidence 99999987
No 3
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=85.36 E-value=10 Score=33.24 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=95.8
Q ss_pred ccEEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHh-hc-c----cceeeeee---CCcC---------
Q psy9053 49 TPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMM-MR-A----ENFIVLRR---KPIE--------- 110 (168)
Q Consensus 49 ~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~-~R-A----e~f~ILRr---kPv~--------- 110 (168)
.|+.|...+.|-++|.++=+.|=|-+.....|+-++++.+-|+.=+. -| + -+=+||.. -|.+
T Consensus 155 ~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~~~~~~ 234 (317)
T 3dwl_D 155 ELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQK 234 (317)
T ss_dssp TCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSCC----
T ss_pred CeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCCCcccc
Confidence 78899999999999999999999999999999999999999987543 22 1 22345555 3333
Q ss_pred ---ccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Q psy9053 111 ---GYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK 166 (168)
Q Consensus 111 ---GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~ 166 (168)
+-=|||.+.-.|++.=-+.+-|+.|..|=.-+-=-|.--|--+-+|=|.=.++|++
T Consensus 235 ~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~ 293 (317)
T 3dwl_D 235 GDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQK 293 (317)
T ss_dssp ---CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHH
Confidence 22389999999998877889999999999999888888898888988877777775
No 4
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=81.16 E-value=26 Score=30.26 Aligned_cols=118 Identities=20% Similarity=0.295 Sum_probs=92.4
Q ss_pred ccEEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHhh-cc---cceeeeeeC---CcC-----------
Q psy9053 49 TPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMM-RA---ENFIVLRRK---PIE----------- 110 (168)
Q Consensus 49 ~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~~-RA---e~f~ILRrk---Pv~----------- 110 (168)
.|+.|...+.|-.+|+++=+.|=|=+.....|+-+.++.+-|+.=++. |- .+=+||... |.+
T Consensus 140 ~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~~~~APqvlfs~~~PPlEL~~~~~~~~~n 219 (300)
T 1k8k_D 140 NRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDN 219 (300)
T ss_dssp CCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCCGGGTTTTCCCSTT
T ss_pred ceEEeecCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhccCCCCceecCCCCCChHHcCCccccCCC
Confidence 358888888899999999999999999999999999999999875542 21 222344332 222
Q ss_pred ccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Q psy9053 111 GYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK 166 (168)
Q Consensus 111 GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~ 166 (168)
+-=|||.+.-.|++.=.+.+-|+.|.+|=.-+-=-|--=|--+-+|=|.=.++|++
T Consensus 220 ~gyVTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flk 275 (300)
T 1k8k_D 220 IGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLK 275 (300)
T ss_dssp EEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 23399999999997667789999999998888877877787888888877777775
No 5
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=47.58 E-value=17 Score=31.42 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=29.5
Q ss_pred eEEEEEEeeccchH-----HHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhH
Q psy9053 69 SVRISIAVKQADEI-----EKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFH 122 (168)
Q Consensus 69 SvRVSi~ikq~Dei-----E~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H 122 (168)
-+.|||.+|--+|| ++.|-+.|-.+ . . .|=+|||+|.+|--..
T Consensus 54 ~i~vSisl~~~~~L~~~Ga~e~Lk~~Yg~~--------v-~--~pe~Gy~~tL~idl~~ 101 (300)
T 1k8k_D 54 KVMVSISLKFYKELQAHGADELLKRVYGSY--------L-V--NPESGYNVSLLYDLEN 101 (300)
T ss_dssp EEEEEEECTTHHHHHTTTHHHHHHHHHGGG--------E-E--SCCTTCSEEEEEETTS
T ss_pred EEEEEEEccchHHHhhcCHHHHHHHHcccc--------c-c--CCCCCccEEEEEEHHH
Confidence 37789999877765 34555555433 2 2 7889999999997543
No 6
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=36.06 E-value=18 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhhhhhhh
Q psy9053 137 HFMEEIDKEISEMKLAVNAR 156 (168)
Q Consensus 137 ~FmeeidkeIsemKl~~naR 156 (168)
.|+.++.++|..||..+|.|
T Consensus 75 ~~v~~l~~~i~~lk~~~~~~ 94 (95)
T 2c5k_T 75 AQVKNIKQQLDALKLRFDRR 94 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999876
No 7
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=28.70 E-value=55 Score=22.86 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.2
Q ss_pred EEEeecCCceEEEeccc
Q psy9053 51 VLISRNEKEKVLIEGSI 67 (168)
Q Consensus 51 l~I~Rne~E~~lIE~Si 67 (168)
|+++|..+|.+.|-..|
T Consensus 2 LVLtRk~GEsI~IGd~I 18 (70)
T 2jpp_A 2 LILTRKVGESINIGDDI 18 (70)
T ss_dssp EEEEEETTCEEEETTTE
T ss_pred eEEEccCCCeEEECCCE
Confidence 68999999999987654
No 8
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=28.47 E-value=62 Score=25.69 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEeccc
Q psy9053 4 TLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSI 67 (168)
Q Consensus 4 tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~Si 67 (168)
.++.-++....|+.+|=|..=-+.|+=.-...=-|++...+-.+.||.++..++.....-|+|.
T Consensus 37 ~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~vlINP~I~~~s~~~~~~~EGCL 100 (176)
T 1lme_A 37 NLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAVINPEILEIDPETEVAEEGCL 100 (176)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSSCCEEEEEEEEEEECSCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEehhcCcceEEEEEEcCCceEEEECCEEEccCCcEEeccCCcc
Confidence 3556677888999999888888888833332222444444678999999988765444678764
No 9
>3o6q_B Stage II sporulation protein SB; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=22.76 E-value=63 Score=21.92 Aligned_cols=29 Identities=28% Similarity=0.642 Sum_probs=23.6
Q ss_pred hcccceeeeeeCC---cCccceeeeeehhHHHHhhhh
Q psy9053 96 MRAENFIVLRRKP---IEGYDISFLITNFHTEQMYKH 129 (168)
Q Consensus 96 ~RAe~f~ILRrkP---v~GYDISFLITn~H~e~m~k~ 129 (168)
+++-.|.+++|+. |+||.+| -|||..+|.
T Consensus 12 ~~~~~fk~~kkks~~s~~~y~vS-----PhT~rIfK~ 43 (56)
T 3o6q_B 12 RAAKPFKILKKRSTTSVASYQVS-----PHTARIFKE 43 (56)
T ss_dssp CCSSCEEEEECCCSEEECCCCCC-----HHHHHHHHH
T ss_pred hhhhhHHHHHHhccccccccccC-----hhHHHHHHH
Confidence 4567899999886 7899988 799988775
No 10
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=22.45 E-value=48 Score=24.03 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=27.7
Q ss_pred HhhhhHHHHHHH--------------HHHHHHHHHHhhhhhhhhhhhh
Q psy9053 125 QMYKHKLVDFVL--------------HFMEEIDKEISEMKLAVNARAR 158 (168)
Q Consensus 125 ~m~k~kLidFIi--------------~FmeeidkeIsemKl~~naRaR 158 (168)
.|-|-.|+|||. .|.+.||.|++.+|=.+|+=-+
T Consensus 26 ~~AkiSl~DyImiKRGS~DmPe~L~~~~~~QideeV~~LKe~IdaLNK 73 (83)
T 1zke_A 26 KLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNK 73 (83)
T ss_dssp HHHTCCHHHHHHHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHhheeccCccCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888885 5889999999999998887544
No 11
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=21.51 E-value=20 Score=27.79 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=34.4
Q ss_pred ccEEE-eecCCce---EEEecccceEEEEEEeeccchHHHHHHHHHHHHHh
Q psy9053 49 TPVLI-SRNEKEK---VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMM 95 (168)
Q Consensus 49 ~Pl~I-~Rne~E~---~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~ 95 (168)
+|++. +|++.++ -+|+++-|.-++.++-++-+||++||..-|...|.
T Consensus 95 kPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~~~~~ 145 (152)
T 4fyk_A 95 KPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLV 145 (152)
T ss_dssp CCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC----
T ss_pred CeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHHhhHH
Confidence 89888 6655443 36788888889999998889999999877655543
Done!