RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9053
(168 letters)
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 168
Score = 265 bits (678), Expect = 2e-92
Identities = 107/168 (63%), Positives = 138/168 (82%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
MS+TL PYL VR TL A++ LE FSS++VER ++PEVEV S E+LL P+++SRNE+E+
Sbjct: 1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
LIE S+NSVR SI +KQ DEIE+IL KFM+F+M RAE+F +LRRKP++GYDISFLITN
Sbjct: 61 CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
+HTE+M KHKLVDF++ FMEE+D EISEMKL +N RAR+ +E +L F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1
PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F*
2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Length = 168
Score = 264 bits (677), Expect = 2e-92
Identities = 148/168 (88%), Positives = 158/168 (94%)
Query: 1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
M++TL PYL VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 24/102 (23%)
Query: 78 QADE----IEKILCHKFMRFMMMRAEN-----FIVLRRKPIEGYDISFLITN-FHTEQMY 127
DE E L KF+ ++ E F + + ++ +L N H
Sbjct: 50 ADDEPTTPAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA---- 103
Query: 128 KHKLVDFVLHFMEEIDKEISEMKLAVNA--RARICSEEFLKR 167
++E D + + K + ARI ++ +
Sbjct: 104 ------LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.007
Identities = 30/194 (15%), Positives = 59/194 (30%), Gaps = 48/194 (24%)
Query: 1 MSSTLMPYLKVVRHTLNAAM--CLENFSSQVVERHNK-----PEVEVRTSKELLLTPVL- 52
+T + V L + L + P LL ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILL--SLIW 396
Query: 53 --ISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIE 110
+ +++ V+ + + S+ KQ E I + ++ EN L R ++
Sbjct: 397 FDVIKSDVMVVVNK----LHKYSLVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVD 451
Query: 111 GYDI-------------------SFL------ITNFHTEQMYKHKLVDFVLHFMEEIDKE 145
Y+I S + I + +++ +DF F+E ++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLE---QK 506
Query: 146 ISEMKLAVNARARI 159
I A NA I
Sbjct: 507 IRHDSTAWNASGSI 520
Score = 28.7 bits (63), Expect = 1.1
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 120 NFHTEQMYKHKLVDFVLHFMEEI--D---KEISEMKLAVNARARICSEEF 164
+F T + +++ D + F + + K++ +M ++ + EE
Sbjct: 8 DFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-----LSKEEI 51
Score = 27.5 bits (60), Expect = 2.4
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 19/82 (23%)
Query: 75 AVKQADEIEKILC--HKFMRFMMMRAENFIVLRRKPIEGY----------DISFLITNFH 122
++ +EI+ I+ + + F L K E + FL++
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 123 TEQMYKHKLVDFVLHFMEEIDK 144
TE + + + ++E+ D+
Sbjct: 100 TE--QRQPSMMTRM-YIEQRDR 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.2
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 9/25 (36%)
Query: 140 EEIDKEISEMK---------LAVNA 155
+ + K + +K LA+ A
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKA 44
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
glucosamine-6-phosphate deamina PSI, protein structure
initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Length = 342
Score = 26.7 bits (60), Expect = 4.1
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 137 HFMEEIDKEISEMKLAVNA--RARICSEEFLKRF 168
H M + KEI++ K + + + E + F
Sbjct: 11 HHMSKTLKEITDQKNELKKFFENFVLNLEKTEIF 44
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 7.5
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 128 KHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK 166
K L ++ E+++K ++A + F +
Sbjct: 117 KKDLEEWNQRQSEQVEKNKINNRIA--------DKAFYQ 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.375
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,534,589
Number of extensions: 146059
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 16
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.2 bits)