RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9053
         (168 letters)



>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 167

 Score =  296 bits (760), Expect = e-105
 Identities = 147/167 (88%), Positives = 157/167 (94%)

Query: 2   SSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKV 61
           ++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEKV
Sbjct: 1   TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKV 60

Query: 62  LIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF 121
           LIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITNF
Sbjct: 61  LIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNF 120

Query: 122 HTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           HTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 167


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.7 bits (53), Expect = 6.8
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 16/157 (10%)

Query: 5   LMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIE 64
             P  K V+H+      L    S ++   ++P + VR   +L         N +   L  
Sbjct: 285 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALE- 343

Query: 65  GSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTE 124
                  +          E +  H       ++ E  + +R++ +   D+ + + +    
Sbjct: 344 ------SMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAV---DLLYAMCDRSN- 393

Query: 125 QMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICS 161
                ++V  +L ++E  D  I E    V   A +  
Sbjct: 394 ---AQQIVAEMLSYLETADYSIREE--IVLKVAILAE 425


>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase,
           MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
          Length = 129

 Score = 23.7 bits (51), Expect = 8.8
 Identities = 6/74 (8%), Positives = 18/74 (24%), Gaps = 2/74 (2%)

Query: 71  RISIAVKQ--ADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYK 128
            +  A      D        ++      R    ++       G   + ++    +    +
Sbjct: 18  SLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVISRPRSE 77

Query: 129 HKLVDFVLHFMEEI 142
            + V F       +
Sbjct: 78  EQKVCFYKLLTGAL 91


>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
           flexneri [TaxId: 623]}
          Length = 264

 Score = 24.1 bits (51), Expect = 9.3
 Identities = 5/85 (5%), Positives = 21/85 (24%), Gaps = 5/85 (5%)

Query: 66  SINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQ 125
            I   +++  ++       +     M          + L    +    +     + H   
Sbjct: 171 LIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAA 230

Query: 126 MYKHK-----LVDFVLHFMEEIDKE 145
                     +   +   ++ + +E
Sbjct: 231 SIADCRDILQMEQLLSALIQRLTRE 255


>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
           562]}
          Length = 477

 Score = 24.1 bits (52), Expect = 9.9
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 10  KVVRHTLNAAMCLENFSS---QVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGS 66
             +R  L+ A+ ++  S+       R   P   +    +  L   +    +  +      
Sbjct: 383 SALRFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAI 442

Query: 67  INSVRISI-AVKQ-ADEIEKILCHKFMRF 93
              ++I I A+     E +++   K   F
Sbjct: 443 SEHLQIGIRAIDLLRAEGDRLHSRKLRTF 471


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,252
Number of extensions: 27935
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 8
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)