BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9054
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZYI|A Chain A, Solution Structure Of Icln, A Multifunctional Protein
Involved In Regulatory Mechanisms As Different As Cell
Volume Regulation And Rna Splicing
Length = 171
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 11 LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
L + P P + Q+P T A + + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct: 13 LKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 71
Query: 69 IHAISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKT 128
+HA+SRD N + E +Y+ V + + E R VP DK+
Sbjct: 72 LHAVSRDLNAYPREHLYVMV----NAKFGEESKESVAEEEDSDDDVEPIAEFRFVPSDKS 127
Query: 129 ALEDIFMAMNQCQKLHP 145
ALE +F AM +CQ LHP
Sbjct: 128 ALEAMFTAMCECQALHP 144
>pdb|4F7U|Q Chain Q, Macromolecular Machine 6
pdb|4F7U|P Chain P, Macromolecular Machine 6
Length = 129
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 37 LGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSXXX 96
+G GT+YIA++ L W + G ++E+ ++++H IS + +CIY ++ +
Sbjct: 30 VGEGTVYIAQNTLSWQPTELAEGISIEWKQVSLHGISSN----PRKCIYFMLDHK----- 80
Query: 97 XXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKTALEDIFMAMNQCQKL 143
+ E L+P+D ++ ++ AM CQ L
Sbjct: 81 ----VEWNGVYGDVDEQFGEVTECWLMPEDIATVDTMYSAMTTCQAL 123
>pdb|1VU2|G Chain G, The 8s Snrnp Assembly Intermediate
pdb|1VU2|O Chain O, The 8s Snrnp Assembly Intermediate
pdb|1VU2|W Chain W, The 8s Snrnp Assembly Intermediate
pdb|1VU2|EE Chain e, The 8s Snrnp Assembly Intermediate
pdb|1VU2|MM Chain m, The 8s Snrnp Assembly Intermediate
pdb|1VU2|UU Chain u, The 8s Snrnp Assembly Intermediate
pdb|1VU2|3 Chain 3, The 8s Snrnp Assembly Intermediate
pdb|1VU3|G Chain G, The 8s Snrnp Assembly Intermediate
pdb|1VU3|O Chain O, The 8s Snrnp Assembly Intermediate
pdb|1VU3|W Chain W, The 8s Snrnp Assembly Intermediate
pdb|1VU3|EE Chain e, The 8s Snrnp Assembly Intermediate
pdb|1VU3|MM Chain m, The 8s Snrnp Assembly Intermediate
pdb|1VU3|UU Chain u, The 8s Snrnp Assembly Intermediate
pdb|4F77|O Chain O, The 8s Snrnp Assembly Intermediate
pdb|4F77|G Chain G, The 8s Snrnp Assembly Intermediate
pdb|4F77|W Chain W, The 8s Snrnp Assembly Intermediate
pdb|4F77|EE Chain e, The 8s Snrnp Assembly Intermediate
pdb|4F77|MM Chain m, The 8s Snrnp Assembly Intermediate
pdb|4F77|UU Chain u, The 8s Snrnp Assembly Intermediate
pdb|4F77|3 Chain 3, The 8s Snrnp Assembly Intermediate
Length = 186
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 31/137 (22%)
Query: 37 LGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVERE----- 91
+G GT+YIA++ L W + G ++E+ ++++H IS + +CIY ++ +
Sbjct: 30 VGEGTVYIAQNTLSWQPTELAEGISIEWKQVSLHGISSN----PRKCIYFMLDHKVEWNG 85
Query: 92 ----------------------KSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKTA 129
+ E L+P+D
Sbjct: 86 VYGDPPQQAVNGRNGGGSEAEVDEGNGSDEHDEDDNFEDAVDEQFGEVTECWLMPEDIHT 145
Query: 130 LEDIFMAMNQCQKLHPD 146
++ ++ AM CQ LHPD
Sbjct: 146 VDTMYSAMTTCQALHPD 162
>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
Geotrichum Candidum
Length = 544
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 3 VRTFQSIPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNS----SSGL 58
V TF+ IP ++ P H +P T +Y + L A +L NS L
Sbjct: 21 VDTFKGIPFADPPLNDLRFKHPQPFTGSY---QGLKANDFSPACMQLDPGNSLTLLDKAL 77
Query: 59 GFALEYP---RITIHAISRDTNHFAEECIYLQVER 90
G A P R ++ +++ T E+C+YL V R
Sbjct: 78 GLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFR 112
>pdb|1AL3|A Chain A, Cofactor Binding Fragment Of Cysb From Klebsiella
Aerogenes
Length = 324
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 40 GTLYIAESKLQWTNSSSGL--GFALEYPRITIH 70
G+LY+A + Q + G+ GF YPR+++H
Sbjct: 93 GSLYVATTHTQARYALPGVIKGFIERYPRVSLH 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,105,558
Number of Sequences: 62578
Number of extensions: 133263
Number of successful extensions: 253
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 6
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)