Query psy9054
Match_columns 156
No_of_seqs 102 out of 221
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:46:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3238|consensus 100.0 2.8E-41 6E-46 270.3 10.9 138 9-149 2-142 (216)
2 PF03517 Voldacs: Regulator of 100.0 8.6E-40 1.9E-44 249.1 10.4 111 40-153 1-115 (135)
3 smart00683 DM16 Repeats in sea 97.1 0.0029 6.2E-08 41.8 6.3 30 39-68 20-50 (55)
4 PF07289 DUF1448: Protein of u 96.5 0.014 3E-07 51.1 8.2 96 17-138 153-248 (339)
5 PF11605 Vps36_ESCRT-II: Vacuo 96.5 0.0077 1.7E-07 43.1 5.5 57 14-70 9-70 (89)
6 PF08567 TFIIH_BTF_p62_N: TFII 96.4 0.021 4.6E-07 39.9 7.1 49 39-91 13-65 (79)
7 PF02893 GRAM: GRAM domain; I 95.2 0.065 1.4E-06 35.4 5.2 54 13-68 6-63 (69)
8 smart00568 GRAM domain in gluc 94.3 0.28 6.1E-06 31.5 6.5 40 28-67 12-54 (61)
9 PF07289 DUF1448: Protein of u 92.1 2.3 5E-05 37.5 10.6 74 17-91 21-97 (339)
10 KOG3294|consensus 89.0 0.73 1.6E-05 38.9 4.7 107 18-144 19-139 (261)
11 PF14470 bPH_3: Bacterial PH d 88.4 2.1 4.6E-05 29.2 6.0 33 36-68 20-55 (96)
12 PF08000 bPH_1: Bacterial PH d 78.7 26 0.00056 26.4 9.0 78 39-141 41-123 (124)
13 cd01202 FRS2 Fibroblast growth 51.1 28 0.00061 25.7 3.9 32 35-67 18-49 (102)
14 COG0731 Fe-S oxidoreductases [ 47.9 8.1 0.00017 33.4 0.8 22 66-88 20-43 (296)
15 PRK00907 hypothetical protein; 40.7 31 0.00067 24.8 2.7 24 118-141 63-86 (92)
16 PF14492 EFG_II: Elongation Fa 39.7 46 0.00099 22.4 3.4 32 115-146 3-34 (75)
17 PRK06789 flagellar motor switc 37.7 40 0.00087 23.3 2.9 27 23-49 39-65 (74)
18 PRK02047 hypothetical protein; 37.4 38 0.00083 24.0 2.8 25 118-142 62-86 (91)
19 PF06622 SepQ: SepQ protein; 36.9 40 0.00086 28.9 3.2 27 37-63 23-52 (305)
20 cd00824 PTBI IRS-like phosphot 36.3 60 0.0013 23.8 3.7 31 37-67 20-51 (104)
21 PLN03060 inositol phosphatase- 35.3 20 0.00042 29.6 1.1 19 128-146 69-87 (206)
22 COG1886 FliN Flagellar motor s 34.0 41 0.0009 25.5 2.7 27 23-49 103-129 (136)
23 smart00310 PTBI Phosphotyrosin 33.9 69 0.0015 23.3 3.7 31 37-67 19-50 (98)
24 TIGR03060 PS_II_psb29 photosys 32.8 27 0.00058 28.9 1.6 19 128-146 71-89 (214)
25 PRK13266 Thf1-like protein; Re 32.3 28 0.0006 29.1 1.6 19 128-146 71-89 (225)
26 PRK15464 cold shock-like prote 31.8 84 0.0018 21.2 3.6 26 47-72 7-35 (70)
27 PF11264 ThylakoidFormat: Thyl 30.9 26 0.00056 29.0 1.2 19 128-146 66-84 (216)
28 PF14844 PH_BEACH: PH domain a 29.4 1.1E+02 0.0023 21.4 4.1 31 38-68 17-64 (106)
29 PRK14998 cold shock-like prote 27.0 1.1E+02 0.0025 20.7 3.7 27 47-73 4-33 (73)
30 PRK04998 hypothetical protein; 26.7 70 0.0015 22.3 2.7 24 119-142 60-83 (88)
31 KOG2104|consensus 26.7 40 0.00088 25.7 1.5 54 38-93 27-89 (126)
32 COG2075 RPL24A Ribosomal prote 26.7 69 0.0015 21.9 2.5 18 37-54 15-33 (66)
33 PF02174 IRS: PTB domain (IRS- 26.2 1.3E+02 0.0028 21.3 4.0 36 37-72 21-57 (100)
34 PF02041 Auxin_BP: Auxin bindi 25.2 1E+02 0.0023 24.5 3.6 37 8-48 45-83 (167)
35 KOG1690|consensus 25.2 54 0.0012 27.1 2.1 40 35-76 35-74 (215)
36 PRK10354 RNA chaperone/anti-te 24.7 1.4E+02 0.003 19.8 3.8 17 47-63 7-23 (70)
37 PRK00341 hypothetical protein; 24.6 84 0.0018 22.3 2.8 24 118-141 62-85 (91)
38 KOG3238|consensus 23.9 31 0.00068 28.5 0.5 38 116-153 132-170 (216)
39 PRK09507 cspE cold shock prote 23.6 70 0.0015 21.3 2.1 25 47-71 6-33 (69)
40 PRK09937 stationary phase/star 23.5 68 0.0015 21.9 2.0 25 47-71 4-31 (74)
41 TIGR02381 cspD cold shock doma 23.3 70 0.0015 21.2 2.0 17 47-63 4-20 (68)
42 PRK10943 cold shock-like prote 22.4 77 0.0017 21.1 2.1 17 47-63 6-22 (69)
43 PF08512 Rtt106: Histone chape 20.5 3.1E+02 0.0068 19.2 5.5 36 38-75 11-46 (95)
44 PRK15463 cold shock-like prote 20.1 1.8E+02 0.004 19.4 3.6 24 47-70 7-33 (70)
No 1
>KOG3238|consensus
Probab=100.00 E-value=2.8e-41 Score=270.31 Aligned_cols=138 Identities=43% Similarity=0.757 Sum_probs=117.9
Q ss_pred ecCcCCC--CCCCceEE-ecCCEEEEecCCCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcceEE
Q psy9054 9 IPLSNLP--EPSGNVLH-QEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIY 85 (156)
Q Consensus 9 ~~l~~~~--~p~e~v~~-~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~clY 85 (156)
++.+.|+ +|.+|+++ +++|+++++|...+|+||||||+++|+|++.+-.+||+|.||+|+||||||+++.|+.+|||
T Consensus 2 ~L~~~~~~~~P~eg~l~~~t~n~~a~ln~kvlg~GTlYIa~s~LsWl~~~~akGfSvey~~IsLHaiSrdps~c~~~~ly 81 (216)
T KOG3238|consen 2 TLTMRFSSPPPAEGLLYTQTPNTKAVLNRKVLGTGTLYIAESTLSWLSTSGAKGFSVEYPTISLHAISRDPSDCLSEHLY 81 (216)
T ss_pred eeEEecCCCCCccchhhccccchheeecCcccccceEEEecceEEeeecccccceeeecceeEEEeeeCChhhcchhhhe
Confidence 4556665 88999999 77799999999999999999999999999974459999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhhhcCCCCCC
Q psy9054 86 LQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQKLHPDPDQ 149 (156)
Q Consensus 86 ~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~~LhPDp~d 149 (156)
.||+.+...+..+.. .+++++++++.+.++|+||||.|+++|++||.+||+||+|||+|++
T Consensus 82 ~~Ve~~~~e~~~~aa---~~eee~sdddve~i~e~rfvpsDk~~l~a~f~qfcecqel~p~P~E 142 (216)
T KOG3238|consen 82 VMVEWKFEESKEQAA---DEEEEDSDDDVEPITEFRFVPSDKSALEAMFTQFCECQELNPDPDE 142 (216)
T ss_pred eeeeecccccccccc---cccccCccccccccccceecCCchhHHHHHHHHHHhhhhcCCCccc
Confidence 999987654211111 2234445567899999999999999999999999999999999933
No 2
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=100.00 E-value=8.6e-40 Score=249.08 Aligned_cols=111 Identities=47% Similarity=0.944 Sum_probs=65.3
Q ss_pred eEEEEecceEEEee-CCCCceEEEecCcEEEEEEecCCC-CCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy9054 40 GTLYIAESKLQWTN-SSSGLGFALEYPRITIHAISRDTN-HFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSM 117 (156)
Q Consensus 40 GtL~Vt~~~l~w~~-~~~~~G~si~YpsI~LHAIsrd~~-~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~ 117 (156)
|+||||+++|+||+ .++++||+||||+|+||||+|+++ .+|+|||||||+....... .++.+++++++++++..+
T Consensus 1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld~~~~~~~---~~~~~~~~~~~~~~~~~~ 77 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLDSDLEEDE---EGDDEDDEEDDEEDDESS 77 (135)
T ss_dssp EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S-S--S--EEEEEE----SS----SSS---S--S-S--S-SE
T ss_pred CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCCCCCCceEEEEEecccCccc---cccccccccccccccccc
Confidence 89999999999999 578999999999999999999998 9999999999997642110 111122223345667899
Q ss_pred eEEEEEcCCcch--HHHHHHHHHhhhhcCCCCCCCCCC
Q psy9054 118 IEIRLVPQDKTA--LEDIFMAMNQCQKLHPDPDQSPLS 153 (156)
Q Consensus 118 ~Elr~vP~d~~~--l~~if~Ams~C~~LhPDp~d~d~~ 153 (156)
+||||+|.++++ |++||+|||+||+|||||++++++
T Consensus 78 ~El~l~P~~~~~~~l~~if~Als~C~~LhPD~~deddd 115 (135)
T PF03517_consen 78 VELRLVPSDPSSDMLDEIFEALSECQELHPDPDDEDDD 115 (135)
T ss_dssp EEEEEEES-HHH--HHHHHHHHHHHHH-----------
T ss_pred eEEEEecCcccchHHHHHHHHHHHHHHhCCCCcccccc
Confidence 999999999988 999999999999999999966555
No 3
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=97.06 E-value=0.0029 Score=41.76 Aligned_cols=30 Identities=20% Similarity=0.615 Sum_probs=24.6
Q ss_pred eeEEEEecceEEEeeCC-CCceEEEecCcEE
Q psy9054 39 TGTLYIAESKLQWTNSS-SGLGFALEYPRIT 68 (156)
Q Consensus 39 ~GtL~Vt~~~l~w~~~~-~~~G~si~YpsI~ 68 (156)
.|+|+||+-|++|++.. ...-+||||-.|.
T Consensus 20 ~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~ 50 (55)
T smart00683 20 LGVFFVTNLRLVWHSDTNPRFNISVGYLQIT 50 (55)
T ss_pred eeEEEEEeeEEEEEeCCCCceEEEEcceeEE
Confidence 89999999999999983 5566778876653
No 4
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=96.52 E-value=0.014 Score=51.12 Aligned_cols=96 Identities=16% Similarity=0.399 Sum_probs=62.5
Q ss_pred CCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcceEEEEEecCCCCCC
Q psy9054 17 PSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEG 96 (156)
Q Consensus 17 p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~~~~~~ 96 (156)
|.|.|.-+...|--.=.++.- -|+++||+=||+|+.+ .+..|.|.-|-|.+.+|.--.+-|. ++|.++.....
T Consensus 153 p~E~v~~~~~gVwnls~dqGn-LGtfivTNvRiVW~A~-~ne~fNVSiPylqi~~i~ir~SKfG-~aLVieT~~~s---- 225 (339)
T PF07289_consen 153 PQEQVYSRVNGVWNLSSDQGN-LGTFIVTNVRIVWFAD-MNESFNVSIPYLQIKSIRIRDSKFG-PALVIETSESS---- 225 (339)
T ss_pred CccEEeeccCCEEEcccCCCc-eeEEEEeeeEEEEEcc-CCccccccchHhhheeeeeeccccc-eEEEEEEeccC----
Confidence 566666666655543333332 6999999999999998 4555555555566777776556676 78988877431
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHH
Q psy9054 97 DGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMN 138 (156)
Q Consensus 97 ~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams 138 (156)
-.=+.-.|+-|.+ .|+.+|+-++
T Consensus 226 -----------------GgYVLGFRvDP~E--rL~~l~KEi~ 248 (339)
T PF07289_consen 226 -----------------GGYVLGFRVDPEE--RLQELFKEIQ 248 (339)
T ss_pred -----------------CcEEEEEEcCHHH--HHHHHHHHHH
Confidence 1234557777763 6777766544
No 5
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=96.50 E-value=0.0077 Score=43.10 Aligned_cols=57 Identities=25% Similarity=0.449 Sum_probs=41.1
Q ss_pred CCCCCCceEEecCCEEEEecCCC---cceeEEEEecceEEEeeCC--CCceEEEecCcEEEE
Q psy9054 14 LPEPSGNVLHQEPATTAYIENEN---LGTGTLYIAESKLQWTNSS--SGLGFALEYPRITIH 70 (156)
Q Consensus 14 ~~~p~e~v~~~~~~~~l~~~~~~---~g~GtL~Vt~~~l~w~~~~--~~~G~si~YpsI~LH 70 (156)
+..|.|.+.+.|.+|-||-++.- .-.|+||+|+.||+|.+.. ....++|+-..|.--
T Consensus 9 ~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~ 70 (89)
T PF11605_consen 9 VLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHI 70 (89)
T ss_dssp ---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEE
T ss_pred ccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEE
Confidence 34579999999999999999844 4699999999999999872 223677777776654
No 6
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=96.39 E-value=0.021 Score=39.89 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=39.3
Q ss_pred eeEEEEecce--EEEeeCCC--CceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054 39 TGTLYIAESK--LQWTNSSS--GLGFALEYPRITIHAISRDTNHFAEECIYLQVERE 91 (156)
Q Consensus 39 ~GtL~Vt~~~--l~w~~~~~--~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~ 91 (156)
.|+|+|++.+ +.|..... ...++|+|..|.-+=++...+ +-+-+||-..
T Consensus 13 ~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s----~Kv~Lki~~~ 65 (79)
T PF08567_consen 13 DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGS----PKVMLKIVLK 65 (79)
T ss_dssp EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTS----STEEEEEEET
T ss_pred CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCC----cceEEEEEEe
Confidence 5999999999 99998733 235999999999999999865 7788888765
No 7
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=95.15 E-value=0.065 Score=35.43 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=29.4
Q ss_pred CCCCCCCceEEecCCEEEEecC-CCcceeEEEEecceEEEeeCCCC--c-eEEEecCcEE
Q psy9054 13 NLPEPSGNVLHQEPATTAYIEN-ENLGTGTLYIAESKLQWTNSSSG--L-GFALEYPRIT 68 (156)
Q Consensus 13 ~~~~p~e~v~~~~~~~~l~~~~-~~~g~GtL~Vt~~~l~w~~~~~~--~-G~si~YpsI~ 68 (156)
.|.-|.++.+... ....+.. ...-.|+||||+.+|.|.+...+ . -+.||+..|.
T Consensus 6 ~F~lp~~E~li~~--~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~ 63 (69)
T PF02893_consen 6 LFKLPEEERLIEE--YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIK 63 (69)
T ss_dssp -----TT--EEEE--EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEE
T ss_pred cccCCCCCeEEEE--EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHhee
Confidence 3444544433333 2333333 44569999999999999995232 2 6889988874
No 8
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=94.26 E-value=0.28 Score=31.51 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=26.4
Q ss_pred EEEEecCCCcceeEEEEecceEEEeeCCCCc---eEEEecCcE
Q psy9054 28 TTAYIENENLGTGTLYIAESKLQWTNSSSGL---GFALEYPRI 67 (156)
Q Consensus 28 ~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~---G~si~YpsI 67 (156)
-...+.....-.|+||||+.+|.|.+...+. -+.||+..|
T Consensus 12 ~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I 54 (61)
T smart00568 12 YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADI 54 (61)
T ss_pred EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHe
Confidence 3334434444599999999999999963332 456665554
No 9
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=92.09 E-value=2.3 Score=37.46 Aligned_cols=74 Identities=15% Similarity=0.273 Sum_probs=45.8
Q ss_pred CCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeC-CCCceEEEecCcEEEEEEecCCC--CCCcceEEEEEecC
Q psy9054 17 PSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNS-SSGLGFALEYPRITIHAISRDTN--HFAEECIYLQVERE 91 (156)
Q Consensus 17 p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~-~~~~G~si~YpsI~LHAIsrd~~--~~p~~clY~qld~~ 91 (156)
|.|.++-+...|+-.=+... -.|+|+||+-|++|.+. .....++|-|..|.==-+....+ ...-++||+.-..+
T Consensus 21 ~GE~~i~~~~~VEDtKGN~G-~~G~l~vTNLR~iW~s~~~~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~ 97 (339)
T PF07289_consen 21 PGEFIIDRLDPVEDTKGNNG-DRGRLVVTNLRLIWHSLKRPRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN 97 (339)
T ss_pred cceEEEEeeeceeeccCCCC-CeeEEEEEeeeeEEeccCCCceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC
Confidence 56666655555544332222 29999999999999998 34567777777764322221111 22457899887743
No 10
>KOG3294|consensus
Probab=89.05 E-value=0.73 Score=38.92 Aligned_cols=107 Identities=13% Similarity=0.184 Sum_probs=68.4
Q ss_pred CCceEEecCCEEEEecCCCc------c--eeEEEEecceEEEeeCCCC---ceEEEecCcEEEEEEecCCCCCCcceEEE
Q psy9054 18 SGNVLHQEPATTAYIENENL------G--TGTLYIAESKLQWTNSSSG---LGFALEYPRITIHAISRDTNHFAEECIYL 86 (156)
Q Consensus 18 ~e~v~~~~~~~~l~~~~~~~------g--~GtL~Vt~~~l~w~~~~~~---~G~si~YpsI~LHAIsrd~~~~p~~clY~ 86 (156)
.|-++...++|++.++.... | +|+||+|+-||+|++..+. +.|.+++ -.||++.=..-.|.-.+|==
T Consensus 19 ~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf--~~mkd~klnQPvF~aNyikG 96 (261)
T KOG3294|consen 19 GESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPF--NLMKDVKLNQPVFGANYIKG 96 (261)
T ss_pred CcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchh--hhhhhceecCcccccceeee
Confidence 67788889999999877443 2 8999999999999998422 4455555 45677776555555444433
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcc---hHHHHHHHHHhhhhcC
Q psy9054 87 QVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKT---ALEDIFMAMNQCQKLH 144 (156)
Q Consensus 87 qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~---~l~~if~Ams~C~~Lh 144 (156)
++..-.. | .-+...+.||.-..-. -.+.|-+|.+..+..-
T Consensus 97 tV~pvpg----------G--------g~~g~as~Kl~F~~GG~ieFgq~~l~~~s~a~r~r 139 (261)
T KOG3294|consen 97 TVQPVPG----------G--------GWEGEASFKLTFNEGGCIEFGQLLLQAASRASRGR 139 (261)
T ss_pred eEeecCC----------C--------CccceeEEEEEecCCCchhHHHHHHHHHHHHHhcc
Confidence 3432210 1 1234456777776643 4567777777766443
No 11
>PF14470 bPH_3: Bacterial PH domain
Probab=88.43 E-value=2.1 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=24.9
Q ss_pred CcceeEEEEecceEEEeeCC---CCceEEEecCcEE
Q psy9054 36 NLGTGTLYIAESKLQWTNSS---SGLGFALEYPRIT 68 (156)
Q Consensus 36 ~~g~GtL~Vt~~~l~w~~~~---~~~G~si~YpsI~ 68 (156)
....|.|++|++||+++... ...-.+++|..|.
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~ 55 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDIT 55 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheE
Confidence 45699999999999999873 2345677777664
No 12
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=78.75 E-value=26 Score=26.45 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=47.8
Q ss_pred eeEEEEecceEEEeeC--CCC--ce-EEEecCcEEEEEEecCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q psy9054 39 TGTLYIAESKLQWTNS--SSG--LG-FALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDD 113 (156)
Q Consensus 39 ~GtL~Vt~~~l~w~~~--~~~--~G-~si~YpsI~LHAIsrd~~~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e 113 (156)
...+..|++||+.++. .++ .- .+|||.+|.--.+-....-....-|-+-+...
T Consensus 41 RD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~---------------------- 98 (124)
T PF08000_consen 41 RDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQ---------------------- 98 (124)
T ss_dssp SEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTE----------------------
T ss_pred ceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCC----------------------
Confidence 5567889999999995 122 22 59999999888887764422222233322211
Q ss_pred CCceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 114 EGSMIEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 114 ~~~~~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
... +.+--.-...+.++|++|+++.
T Consensus 99 -~~~--i~~~f~k~~di~~i~k~L~~~v 123 (124)
T PF08000_consen 99 -GFP--IEFEFKKKTDIYEIYKALAEYV 123 (124)
T ss_dssp -SSE--EEEEEGTTSHHHHHHHHHHHHH
T ss_pred -cEE--EEEecCCCCCHHHHHHHHHHHh
Confidence 111 2222333568999999999874
No 13
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=51.09 E-value=28 Score=25.69 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=25.4
Q ss_pred CCcceeEEEEecceEEEeeCCCCceEEEecCcE
Q psy9054 35 ENLGTGTLYIAESKLQWTNSSSGLGFALEYPRI 67 (156)
Q Consensus 35 ~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI 67 (156)
..+|.|.|=||...|.+++. ....++.||..|
T Consensus 18 ~~~g~g~L~vt~~~L~l~~~-~~~~~~WPl~~L 49 (102)
T cd01202 18 NELGSGWLELTRTELTLYIS-GKEPVVWPLLCL 49 (102)
T ss_pred CeeeeEEEEecceEEEEEcC-CCCEEEccHHHh
Confidence 45799999999999998886 456677777654
No 14
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=47.91 E-value=8.1 Score=33.43 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=17.7
Q ss_pred cEEEEEEecCCCC--CCcceEEEEE
Q psy9054 66 RITIHAISRDTNH--FAEECIYLQV 88 (156)
Q Consensus 66 sI~LHAIsrd~~~--~p~~clY~ql 88 (156)
-|+|| |+-.|+. +.+.|+|||+
T Consensus 20 G~slg-i~~tP~~~~Cs~~CvyC~~ 43 (296)
T COG0731 20 GISLG-IQMTPSKKWCSYNCVYCWR 43 (296)
T ss_pred ccccC-CccccchhhhcCCCeEEec
Confidence 38899 8877753 5678999999
No 15
>PRK00907 hypothetical protein; Provisional
Probab=40.70 E-value=31 Score=24.77 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=19.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 118 IEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 118 ~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
..+++.-.+..+|++||++|+++.
T Consensus 63 vtv~i~ats~eQld~iY~~L~~~~ 86 (92)
T PRK00907 63 VRIGFRAESREQYDAAHQALRDHP 86 (92)
T ss_pred EEEEEEECCHHHHHHHHHHHhhCC
Confidence 446777778889999999999864
No 16
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=39.68 E-value=46 Score=22.37 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=26.2
Q ss_pred CceeEEEEEcCCcchHHHHHHHHHhhhhcCCC
Q psy9054 115 GSMIEIRLVPQDKTALEDIFMAMNQCQKLHPD 146 (156)
Q Consensus 115 ~~~~Elr~vP~d~~~l~~if~Ams~C~~LhPD 146 (156)
.++..+++.|.++.....|.+||.+...-.|-
T Consensus 3 ~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~ 34 (75)
T PF14492_consen 3 PPVLSVAIEPKNKEDEPKLSEALQKLSEEDPS 34 (75)
T ss_dssp S-SEEEEEEESSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCeEEEEEEECCHhHHHHHHHHHHHHHhcCCe
Confidence 35678999999999999999999999876653
No 17
>PRK06789 flagellar motor switch protein; Validated
Probab=37.72 E-value=40 Score=23.34 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=22.5
Q ss_pred EecCCEEEEecCCCcceeEEEEecceE
Q psy9054 23 HQEPATTAYIENENLGTGTLYIAESKL 49 (156)
Q Consensus 23 ~~~~~~~l~~~~~~~g~GtL~Vt~~~l 49 (156)
+..+.+.+++|++.+|.|.+.+.+.++
T Consensus 39 ~~~epvdI~vNg~lia~GEvVvv~~~f 65 (74)
T PRK06789 39 STKNTVRLMLENEEIGTGKILTKNGKM 65 (74)
T ss_pred cCCCCEEEEECCEEEeEEeEEEECCEE
Confidence 344578899999999999999988764
No 18
>PRK02047 hypothetical protein; Provisional
Probab=37.39 E-value=38 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHhhhh
Q psy9054 118 IEIRLVPQDKTALEDIFMAMNQCQK 142 (156)
Q Consensus 118 ~Elr~vP~d~~~l~~if~Ams~C~~ 142 (156)
..+++.-.+..++++||++|++|..
T Consensus 62 vtv~v~v~s~eq~~~iY~~L~~~~~ 86 (91)
T PRK02047 62 LTITVRATSREQLDNIYRALTGHPM 86 (91)
T ss_pred EEEEEEECCHHHHHHHHHHHhhCCC
Confidence 4467777788999999999999854
No 19
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=36.89 E-value=40 Score=28.87 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=19.1
Q ss_pred cceeEEEEecce---EEEeeCCCCceEEEe
Q psy9054 37 LGTGTLYIAESK---LQWTNSSSGLGFALE 63 (156)
Q Consensus 37 ~g~GtL~Vt~~~---l~w~~~~~~~G~si~ 63 (156)
+|+|.||||++. -.-|-..+|+|+.+|
T Consensus 23 ig~grlyit~egha~~Atfre~eG~Gi~lp 52 (305)
T PF06622_consen 23 IGTGRLYITSEGHACHATFREVEGNGIRLP 52 (305)
T ss_pred cccceEEEecCCceEEEEeeeccCceEEEE
Confidence 499999999875 234444577777665
No 20
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=36.32 E-value=60 Score=23.76 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=23.8
Q ss_pred cceeEEEEecceEEEeeCC-CCceEEEecCcE
Q psy9054 37 LGTGTLYIAESKLQWTNSS-SGLGFALEYPRI 67 (156)
Q Consensus 37 ~g~GtL~Vt~~~l~w~~~~-~~~G~si~YpsI 67 (156)
.|.+.|-+|.+.|.++... ...-+.+||..|
T Consensus 20 ~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~l 51 (104)
T cd00824 20 LGSYRLCLTSKELTLVKLGSRVALVVWPLMFL 51 (104)
T ss_pred ceeEEEEECCCEEEEEecCCCceEEEeehHHe
Confidence 4899999999999988872 345577776654
No 21
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=35.25 E-value=20 Score=29.58 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.8
Q ss_pred chHHHHHHHHHhhhhcCCC
Q psy9054 128 TALEDIFMAMNQCQKLHPD 146 (156)
Q Consensus 128 ~~l~~if~Ams~C~~LhPD 146 (156)
...+.||+|||.|..++|+
T Consensus 69 e~~~~IF~Alc~a~~~dp~ 87 (206)
T PLN03060 69 TDRDAIFKAYIEALGEDPD 87 (206)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 4688999999999877764
No 22
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.96 E-value=41 Score=25.50 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=23.1
Q ss_pred EecCCEEEEecCCCcceeEEEEecceE
Q psy9054 23 HQEPATTAYIENENLGTGTLYIAESKL 49 (156)
Q Consensus 23 ~~~~~~~l~~~~~~~g~GtL~Vt~~~l 49 (156)
+....+.+.+|++.+|.|.|.+-+.++
T Consensus 103 ~~~~~VdI~vNg~~Ig~GEvVvvd~~~ 129 (136)
T COG1886 103 LAGEPVDILVNGRLIGRGEVVVVDDKF 129 (136)
T ss_pred cCCCceEEEECCEEEEEEeEEEECCeE
Confidence 346689999999999999999988774
No 23
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=33.95 E-value=69 Score=23.26 Aligned_cols=31 Identities=10% Similarity=-0.068 Sum_probs=23.6
Q ss_pred cceeEEEEecceEEEeeC-CCCceEEEecCcE
Q psy9054 37 LGTGTLYIAESKLQWTNS-SSGLGFALEYPRI 67 (156)
Q Consensus 37 ~g~GtL~Vt~~~l~w~~~-~~~~G~si~YpsI 67 (156)
.|.+.|-+|.+.|.++.. ....-+.+||..|
T Consensus 19 ~G~y~L~lt~~~L~L~~~~~~~~~~~wpl~~l 50 (98)
T smart00310 19 SGSYRLRLTSETLVLWRLNPRVELVVWPLLSL 50 (98)
T ss_pred CeeEEEEECCcEEEEEecCCCccEEEeehhHe
Confidence 578899999999998874 2446677777664
No 24
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=32.78 E-value=27 Score=28.93 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=15.7
Q ss_pred chHHHHHHHHHhhhhcCCC
Q psy9054 128 TALEDIFMAMNQCQKLHPD 146 (156)
Q Consensus 128 ~~l~~if~Ams~C~~LhPD 146 (156)
...+.||+|||.|..++|.
T Consensus 71 e~~~~IF~Alc~a~~~dp~ 89 (214)
T TIGR03060 71 EHLDALFDALCNSNGFDPE 89 (214)
T ss_pred HHHHHHHHHHHHhcCCCHH
Confidence 4688999999999877764
No 25
>PRK13266 Thf1-like protein; Reviewed
Probab=32.28 E-value=28 Score=29.07 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=15.7
Q ss_pred chHHHHHHHHHhhhhcCCC
Q psy9054 128 TALEDIFMAMNQCQKLHPD 146 (156)
Q Consensus 128 ~~l~~if~Ams~C~~LhPD 146 (156)
...+.||+|||.|..++|.
T Consensus 71 e~~~~IF~Alc~a~~~dp~ 89 (225)
T PRK13266 71 EHKDSIFNALCQAVGFDPE 89 (225)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 4688999999999877764
No 26
>PRK15464 cold shock-like protein CspH; Provisional
Probab=31.75 E-value=84 Score=21.22 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=18.5
Q ss_pred ceEEEeeCCCCceEEEecC---cEEEEEE
Q psy9054 47 SKLQWTNSSSGLGFALEYP---RITIHAI 72 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~Yp---sI~LHAI 72 (156)
-+|.||+.+.+-||-.+-. .|=+|.-
T Consensus 7 G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s 35 (70)
T PRK15464 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHIS 35 (70)
T ss_pred EEEEEEECCCCeEEEccCCCCccEEEEeh
Confidence 3589999988888865543 5666643
No 27
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=30.89 E-value=26 Score=29.01 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.4
Q ss_pred chHHHHHHHHHhhhhcCCC
Q psy9054 128 TALEDIFMAMNQCQKLHPD 146 (156)
Q Consensus 128 ~~l~~if~Ams~C~~LhPD 146 (156)
...+.||+|||.|..++|+
T Consensus 66 ~~~~~If~Alc~a~~~dp~ 84 (216)
T PF11264_consen 66 EDKDSIFNALCQALGFDPE 84 (216)
T ss_pred hHHHHHHHHHHHHcCCCHH
Confidence 4688999999998777664
No 28
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=29.39 E-value=1.1e+02 Score=21.43 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=21.1
Q ss_pred ceeEEEEecceEEEeeC-----------------CCCceEEEecCcEE
Q psy9054 38 GTGTLYIAESKLQWTNS-----------------SSGLGFALEYPRIT 68 (156)
Q Consensus 38 g~GtL~Vt~~~l~w~~~-----------------~~~~G~si~YpsI~ 68 (156)
-+|+|.||++++.|... ...+-..++|.+|.
T Consensus 17 ~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~ 64 (106)
T PF14844_consen 17 IPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIK 64 (106)
T ss_dssp EEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEE
T ss_pred EEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhH
Confidence 49999999999999865 13455777777764
No 29
>PRK14998 cold shock-like protein CspD; Provisional
Probab=26.99 E-value=1.1e+02 Score=20.65 Aligned_cols=27 Identities=26% Similarity=0.520 Sum_probs=19.4
Q ss_pred ceEEEeeCCCCceEEEec---CcEEEEEEe
Q psy9054 47 SKLQWTNSSSGLGFALEY---PRITIHAIS 73 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~Y---psI~LHAIs 73 (156)
-+|.||+.+++.||-.+= +.|=+|.-.
T Consensus 4 G~Vkwfn~~kGfGFI~~~~g~~dVFvH~s~ 33 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYST 33 (73)
T ss_pred eEEEEEeCCCceEEEecCCCCccEEEEeee
Confidence 568999998888876553 467777433
No 30
>PRK04998 hypothetical protein; Provisional
Probab=26.72 E-value=70 Score=22.32 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhhhh
Q psy9054 119 EIRLVPQDKTALEDIFMAMNQCQK 142 (156)
Q Consensus 119 Elr~vP~d~~~l~~if~Ams~C~~ 142 (156)
-+++.-.+..++++||++|+++..
T Consensus 60 tv~v~v~s~eq~~~iY~~L~~~~~ 83 (88)
T PRK04998 60 SITITATSIEQVETLYEELAKIEG 83 (88)
T ss_pred EEEEEECCHHHHHHHHHHHhcCCC
Confidence 355666677899999999998753
No 31
>KOG2104|consensus
Probab=26.69 E-value=40 Score=25.69 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=38.6
Q ss_pred ceeEEEEecceEEEeeCCCCce--------EEEecCcEEEEEEec-CCCCCCcceEEEEEecCCC
Q psy9054 38 GTGTLYIAESKLQWTNSSSGLG--------FALEYPRITIHAISR-DTNHFAEECIYLQVEREKS 93 (156)
Q Consensus 38 g~GtL~Vt~~~l~w~~~~~~~G--------~si~YpsI~LHAIsr-d~~~~p~~clY~qld~~~~ 93 (156)
+-|.||+.++.|+|=.. .-+| -++||..|- |.|+. |...-|..||-+++-+...
T Consensus 27 ql~~lY~~~S~LTfEGq-q~qG~~~IveKl~sLpFqkiq-h~IttvD~QPt~~g~ilv~V~G~Lk 89 (126)
T KOG2104|consen 27 QLGALYIDTSMLTFEGQ-QIQGKDAIVEKLTSLPFQKIQ-HSITTVDSQPTPDGGILVMVVGQLK 89 (126)
T ss_pred HhhhhhcccceeeEcch-hhcchHHHHHHHhcCChhhhh-ceeeecccccCCCCcEEEEEeeeee
Confidence 46889999999999877 3344 589999885 55553 2222267789999987653
No 32
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=26.67 E-value=69 Score=21.88 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.3
Q ss_pred cceeEEEEecce-EEEeeC
Q psy9054 37 LGTGTLYIAESK-LQWTNS 54 (156)
Q Consensus 37 ~g~GtL~Vt~~~-l~w~~~ 54 (156)
.|+|.+||-+.. +.||.+
T Consensus 15 PGtG~m~Vr~Dg~v~~Fcs 33 (66)
T COG2075 15 PGTGIMYVRNDGKVLRFCS 33 (66)
T ss_pred CCceEEEEecCCeEEEEec
Confidence 499999997766 888887
No 33
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=26.16 E-value=1.3e+02 Score=21.31 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=28.1
Q ss_pred cceeEEEEecceEEEeeC-CCCceEEEecCcEEEEEE
Q psy9054 37 LGTGTLYIAESKLQWTNS-SSGLGFALEYPRITIHAI 72 (156)
Q Consensus 37 ~g~GtL~Vt~~~l~w~~~-~~~~G~si~YpsI~LHAI 72 (156)
.|.+.|.||...|.+.+. ....-+.+||..|==-+-
T Consensus 21 ~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~ 57 (100)
T PF02174_consen 21 SGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGR 57 (100)
T ss_dssp EEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEE
T ss_pred eEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhcc
Confidence 489999999999999776 345568888888765554
No 34
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=25.24 E-value=1e+02 Score=24.52 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=19.3
Q ss_pred eecCcCCCCCC--CceEEecCCEEEEecCCCcceeEEEEecce
Q psy9054 8 SIPLSNLPEPS--GNVLHQEPATTAYIENENLGTGTLYIAESK 48 (156)
Q Consensus 8 ~~~l~~~~~p~--e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~ 48 (156)
.|-|+.|.|=. --=||....|-+++. |.||||+.++.
T Consensus 45 EVwlQTfAPG~~TPiHRHsCEEVFvVLk----G~GTl~l~~~~ 83 (167)
T PF02041_consen 45 EVWLQTFAPGSATPIHRHSCEEVFVVLK----GSGTLYLASSH 83 (167)
T ss_dssp EEEEEEE-TT-B--EEEESS-EEEEEEE------EEEEE--SS
T ss_pred eEEeeeecCCCCCCCccccccEEEEEEe----cceEEEEeccc
Confidence 45566666542 224666677777765 78999998664
No 35
>KOG1690|consensus
Probab=25.23 E-value=54 Score=27.14 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=31.8
Q ss_pred CCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCC
Q psy9054 35 ENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDT 76 (156)
Q Consensus 35 ~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~ 76 (156)
+.+..|++.+-+=++-.+++ ...+|. .||.|++|--=.++
T Consensus 35 eelpk~tmv~G~yk~qlyd~-~~~~y~-~~p~~gm~VeV~e~ 74 (215)
T KOG1690|consen 35 EELPKGTMVTGNYKAQLYDD-QLKGYG-SYPNIGMHVEVKET 74 (215)
T ss_pred hhCCCCcEEEeeeeeeeecc-hhcccc-cCCCceEEEEeecC
Confidence 44689999999888888887 557777 99999999655554
No 36
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=24.69 E-value=1.4e+02 Score=19.81 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=13.1
Q ss_pred ceEEEeeCCCCceEEEe
Q psy9054 47 SKLQWTNSSSGLGFALE 63 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~ 63 (156)
-+|.||+.+.+-||--+
T Consensus 7 G~Vk~f~~~kGfGFI~~ 23 (70)
T PRK10354 7 GIVKWFNADKGFGFITP 23 (70)
T ss_pred EEEEEEeCCCCcEEEec
Confidence 46899999888887544
No 37
>PRK00341 hypothetical protein; Provisional
Probab=24.63 E-value=84 Score=22.27 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 118 IEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 118 ~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
.-+++.-.+..++++||++|+++.
T Consensus 62 ~tv~i~~~s~~q~~~iy~~L~~~~ 85 (91)
T PRK00341 62 VQLHIVATDEDQLQDINSALRATG 85 (91)
T ss_pred EEEEEEECCHHHHHHHHHHHhhCC
Confidence 447777778899999999999864
No 38
>KOG3238|consensus
Probab=23.89 E-value=31 Score=28.49 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=30.8
Q ss_pred ceeEEEEEc-CCcchHHHHHHHHHhhhhcCCCCCCCCCC
Q psy9054 116 SMIEIRLVP-QDKTALEDIFMAMNQCQKLHPDPDQSPLS 153 (156)
Q Consensus 116 ~~~Elr~vP-~d~~~l~~if~Ams~C~~LhPDp~d~d~~ 153 (156)
...|++.-| .+....+.++.+|.+|+++|||...+...
T Consensus 132 ecqel~p~P~ED~~~~dgee~~mea~d~~~gDs~~~~t~ 170 (216)
T KOG3238|consen 132 ECQELNPDPDEDEDDYDGEEYDMEAHDAGQGDSPNSYTY 170 (216)
T ss_pred hhhhcCCCccccccccccchhhhhhhhccCCCCcccccc
Confidence 456788888 66677889999999999999999765544
No 39
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=23.57 E-value=70 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=16.0
Q ss_pred ceEEEeeCCCCceEEEec---CcEEEEE
Q psy9054 47 SKLQWTNSSSGLGFALEY---PRITIHA 71 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~Y---psI~LHA 71 (156)
-+|.||+.+.+-||--+= +.|=+|.
T Consensus 6 G~Vk~f~~~kGyGFI~~~~g~~dvfvH~ 33 (69)
T PRK09507 6 GNVKWFNESKGFGFITPEDGSKDVFVHF 33 (69)
T ss_pred eEEEEEeCCCCcEEEecCCCCeeEEEEe
Confidence 358999997777774331 3455553
No 40
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.52 E-value=68 Score=21.87 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=18.2
Q ss_pred ceEEEeeCCCCceEEEec---CcEEEEE
Q psy9054 47 SKLQWTNSSSGLGFALEY---PRITIHA 71 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~Y---psI~LHA 71 (156)
-+|.||+.+.+.||-.+= +.|=+|.
T Consensus 4 G~Vkwfn~~KGfGFI~~~~gg~dVFvH~ 31 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEGGGEDIFAHY 31 (74)
T ss_pred eEEEEEeCCCCeEEEeeCCCCccEEEEE
Confidence 468999998888876553 4577774
No 41
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=23.29 E-value=70 Score=21.19 Aligned_cols=17 Identities=29% Similarity=0.763 Sum_probs=12.9
Q ss_pred ceEEEeeCCCCceEEEe
Q psy9054 47 SKLQWTNSSSGLGFALE 63 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~ 63 (156)
-+|.||+.+.+-||--+
T Consensus 4 G~Vk~f~~~kGfGFI~~ 20 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICP 20 (68)
T ss_pred eEEEEEeCCCCeEEEec
Confidence 46899999777777543
No 42
>PRK10943 cold shock-like protein CspC; Provisional
Probab=22.39 E-value=77 Score=21.13 Aligned_cols=17 Identities=35% Similarity=0.845 Sum_probs=13.2
Q ss_pred ceEEEeeCCCCceEEEe
Q psy9054 47 SKLQWTNSSSGLGFALE 63 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~ 63 (156)
-.|.||+.+.+-||--+
T Consensus 6 G~Vk~f~~~kGfGFI~~ 22 (69)
T PRK10943 6 GQVKWFNESKGFGFITP 22 (69)
T ss_pred eEEEEEeCCCCcEEEec
Confidence 35899999888887655
No 43
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=20.45 E-value=3.1e+02 Score=19.15 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=27.3
Q ss_pred ceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecC
Q psy9054 38 GTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRD 75 (156)
Q Consensus 38 g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd 75 (156)
..|.||-++++|+|.-. .--+-|+|..|..=..+|-
T Consensus 11 ~~g~L~pl~~~l~f~~~--kP~~~i~~~dI~~v~feRv 46 (95)
T PF08512_consen 11 NEGFLYPLEKCLLFGLE--KPPFVIPLDDIESVEFERV 46 (95)
T ss_dssp EEEEEEEESSEEEEECS--SS-EEEEGGGEEEEEEE--
T ss_pred cCEEEEEccceEEEecC--CCeEEEEhhHeeEEEEEec
Confidence 48999999999999444 3568899999888777774
No 44
>PRK15463 cold shock-like protein CspF; Provisional
Probab=20.05 E-value=1.8e+02 Score=19.41 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=17.5
Q ss_pred ceEEEeeCCCCceEEEec---CcEEEE
Q psy9054 47 SKLQWTNSSSGLGFALEY---PRITIH 70 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~Y---psI~LH 70 (156)
-.|.||+.+.+-||--|- +.|=+|
T Consensus 7 G~Vk~fn~~kGfGFI~~~~g~~DvFvH 33 (70)
T PRK15463 7 GIVKTFDGKSGKGLITPSDGRKDVQVH 33 (70)
T ss_pred EEEEEEeCCCceEEEecCCCCccEEEE
Confidence 468999998888876663 346666
Done!