Query psy9054
Match_columns 156
No_of_seqs 102 out of 221
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:47:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zyi_A Methylosome subunit pic 100.0 2.3E-52 8E-57 329.1 14.8 143 6-153 8-152 (171)
2 2hth_B Vacuolar protein sortin 97.7 0.0029 1E-07 47.5 15.8 113 15-141 13-128 (140)
3 2cay_A VPS36 PH domain, vacuol 97.4 0.00031 1.1E-08 53.3 6.5 104 14-141 24-132 (145)
4 1pfj_A TFIIH basal transcripti 93.5 0.28 9.4E-06 35.5 7.0 50 38-91 20-70 (108)
5 1w7p_D VPS36P, YLR417W; ESCRT- 90.4 0.051 1.8E-06 49.2 0.0 51 5-55 3-60 (566)
6 1zsq_A Myotubularin-related pr 88.4 3 0.0001 37.4 9.9 52 16-67 10-63 (528)
7 1lw3_A Myotubularin-related pr 86.3 4.9 0.00017 37.0 10.2 52 16-67 82-135 (657)
8 3hsa_A Pleckstrin homology dom 80.4 15 0.0005 26.9 8.9 77 40-141 43-124 (126)
9 2yf0_A Myotubularin-related pr 68.0 35 0.0012 30.4 9.8 75 38-141 25-99 (512)
10 1xr0_B FGFR signalling adaptor 56.1 17 0.00059 26.7 4.7 36 35-71 24-59 (129)
11 1y5o_A TFB1, RNA polymerase II 43.4 89 0.0031 22.5 11.7 49 39-91 13-65 (115)
12 3b77_A Uncharacterized protein 33.5 1.7E+02 0.0058 22.8 10.1 76 41-141 40-122 (193)
13 2kup_A Fibroblast growth facto 30.4 39 0.0013 25.3 3.1 30 37-67 33-62 (146)
14 2kuq_A Fibroblast growth facto 29.2 50 0.0017 24.9 3.6 34 37-71 33-66 (153)
15 3qh6_A CT296; iron, modeling; 29.0 25 0.00086 26.4 1.8 52 16-68 99-154 (157)
16 1j0w_A Downstream of tyrosine 27.5 80 0.0027 22.0 4.2 32 37-68 20-53 (103)
17 4gio_A Putative lipoprotein; u 23.8 18 0.0006 25.5 0.1 25 47-74 54-84 (107)
18 2k5n_A Putative cold-shock pro 23.4 45 0.0015 21.7 2.1 17 47-63 5-21 (74)
19 2kcm_A Cold shock domain famil 21.4 52 0.0018 21.4 2.1 17 47-63 3-19 (74)
20 2h9z_A Hypothetical protein HP 20.3 65 0.0022 21.5 2.5 24 118-141 57-80 (86)
21 1c9o_A CSPB, cold-shock protei 20.2 59 0.002 20.4 2.1 24 47-70 4-29 (66)
No 1
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=100.00 E-value=2.3e-52 Score=329.05 Aligned_cols=143 Identities=45% Similarity=0.811 Sum_probs=101.8
Q ss_pred eeeecCcCCCCCC--CceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcce
Q psy9054 6 FQSIPLSNLPEPS--GNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEEC 83 (156)
Q Consensus 6 ~~~~~l~~~~~p~--e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~c 83 (156)
..|-+|++|+||+ |+|+|++++|++++++..+|+|+||||++||+|++. +++||+|+||+|+||||||++++||+||
T Consensus 8 ~~~~~~~~~~~p~~~E~v~~~~~~v~~vl~~~~~g~GtLyVt~~~l~W~~~-~~~G~sI~YpsIsLHAIsrd~~~~p~~c 86 (171)
T 1zyi_A 8 LEMSFLKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDG-SGLGFSLEYPTISLHAVSRDLNAYPREH 86 (171)
T ss_dssp -------------------CBCSSEEEEBTTBCCCEEEEEEETTEEEEEET-TTEEEEESSCCCSEEECCSSCSSCCSCC
T ss_pred eehhhcccCCCCCCccceEEEcCCEEEEECCCccCceEEEEEcCEEEEEcC-CCcEEEeecCeEEEEEEecCCCCCCCce
Confidence 4678999999998 999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhhhcCCCCCCCCCC
Q psy9054 84 IYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQKLHPDPDQSPLS 153 (156)
Q Consensus 84 lY~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~~LhPDp~d~d~~ 153 (156)
|||||+....+.... + .++++++|++++.++||||+|.++++|++||+|||+||+|||||++++++
T Consensus 87 lY~Qld~~~~~~~~~-~---~~e~~~~Dde~~~~~EirlvP~d~s~l~~if~Ams~Cq~LhPDp~d~d~d 152 (171)
T 1zyi_A 87 LYVMVNAKFGEESKE-S---VAEEEDSDDDVEPIAEFRFVPSDKSALEAMFTAMCECQALHPDPEDEDSD 152 (171)
T ss_dssp EEEEEECCCCSSCSS-S---CCCSCCSSCCSCSEEEEEEEESCHHHHHHHHHHHHHHHHC----------
T ss_pred EEEEEecccCccccc-c---ccccccccccccceeEEEEeCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 999999876542111 0 11222344555779999999999999999999999999999999887765
No 2
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=97.74 E-value=0.0029 Score=47.48 Aligned_cols=113 Identities=13% Similarity=0.185 Sum_probs=76.5
Q ss_pred CCCCCceEEecCCEEEEecCCC--cceeEEEEecceEEEeeCC-CCceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054 15 PEPSGNVLHQEPATTAYIENEN--LGTGTLYIAESKLQWTNSS-SGLGFALEYPRITIHAISRDTNHFAEECIYLQVERE 91 (156)
Q Consensus 15 ~~p~e~v~~~~~~~~l~~~~~~--~g~GtL~Vt~~~l~w~~~~-~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~ 91 (156)
..|.|.+++.+++|.|+.++.. .-.|+||+|+.||+|.+.. ....|+||...|.-=-+... .-+..+-|=+++...
T Consensus 13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~~-~f~~s~Ki~l~l~~~ 91 (140)
T 2hth_B 13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAA-GIGKSAKIVVHLHPA 91 (140)
T ss_dssp CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECC-TTSSCCEEEEEECCC
T ss_pred cCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeecc-ccccCceEEEEecCC
Confidence 4689999999999999998854 4599999999999999873 45789999998875555432 112346666777753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 92 KSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 92 ~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
... +. . +. ..-+....++|+-..... .+.|++|.++.
T Consensus 92 ~~~--~~-~---gp------~~~s~~~~~kLsFr~Gg~-~eF~~~L~~al 128 (140)
T 2hth_B 92 PPN--KE-P---GP------FQSSKNSYIKLSFKEHGQ-IEFYRRLSEEM 128 (140)
T ss_dssp CCC--SS-S---CC------CSTTSCCEEEEEETTSCH-HHHHHHHHHHH
T ss_pred Ccc--CC-C---CC------cccccCcEEEEEEcCCCC-hHHHHHHHHHH
Confidence 211 00 0 10 011223457787776655 77888887764
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=97.41 E-value=0.00031 Score=53.30 Aligned_cols=104 Identities=10% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCCCCCceEEecCCEEEEecCCC---cceeEEEEecceEEEeeCCCC--ceEEEecCcEEEEEEecCCCCCCcceEEEEE
Q psy9054 14 LPEPSGNVLHQEPATTAYIENEN---LGTGTLYIAESKLQWTNSSSG--LGFALEYPRITIHAISRDTNHFAEECIYLQV 88 (156)
Q Consensus 14 ~~~p~e~v~~~~~~~~l~~~~~~---~g~GtL~Vt~~~l~w~~~~~~--~G~si~YpsI~LHAIsrd~~~~p~~clY~ql 88 (156)
+..|.|.+++.+++|.++.++.. .-.|+||+|+.||+|.+.... +.|++|...|.==-+.... -...+.+=+++
T Consensus 24 ~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~-fg~s~Ki~l~~ 102 (145)
T 2cay_A 24 LLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRSPRLILFF 102 (145)
T ss_dssp CCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSSCEEEEEE
T ss_pred ccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCc-cccCceEEEEe
Confidence 34679999999999999999844 359999999999999987332 6799998887654443221 11245666777
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 89 EREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 89 d~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
... + ....+++|+-.+... .+.+++|.++.
T Consensus 103 ~p~--~--------------------~~~~~~KLsFk~GGa-~eF~~~l~~al 132 (145)
T 2cay_A 103 KDP--S--------------------SSTEFVQLSFRKSDG-VLFSQATERAL 132 (145)
T ss_dssp SSC--S--------------------STTCCEEEEESSSCC-HHHHHHHHHHH
T ss_pred cCC--C--------------------CCceEEEEEEcCCCc-hHHHHHHHHHH
Confidence 643 1 111247777776655 55777776654
No 4
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=93.51 E-value=0.28 Score=35.47 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=39.7
Q ss_pred ceeEEEEecceEEEeeC-CCCceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054 38 GTGTLYIAESKLQWTNS-SSGLGFALEYPRITIHAISRDTNHFAEECIYLQVERE 91 (156)
Q Consensus 38 g~GtL~Vt~~~l~w~~~-~~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~ 91 (156)
..|+||+++.+|.|.+. .....+++.|..|.--=||.... +-+-+||-..
T Consensus 20 ~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k----~KVqLqi~l~ 70 (108)
T 1pfj_A 20 QDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK----AKIQLQLVLH 70 (108)
T ss_dssp CBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSS----SSCEEEEECS
T ss_pred CCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCC----ccEEEEEEEe
Confidence 35999999999999996 33455888999999877777653 7788888865
No 5
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=90.37 E-value=0.051 Score=49.24 Aligned_cols=51 Identities=6% Similarity=0.251 Sum_probs=0.0
Q ss_pred eeeeecCcC----CCCCCCceEEecCCEEEEecCCC---cceeEEEEecceEEEeeCC
Q psy9054 5 TFQSIPLSN----LPEPSGNVLHQEPATTAYIENEN---LGTGTLYIAESKLQWTNSS 55 (156)
Q Consensus 5 ~~~~~~l~~----~~~p~e~v~~~~~~~~l~~~~~~---~g~GtL~Vt~~~l~w~~~~ 55 (156)
.+|.+.++. +.-|.|.+++.|++|-||-+..- .-.|.+|+|+.||+|++..
T Consensus 3 ~~~~~~~t~s~rp~L~~~E~~l~vqd~VgLY~Gk~Ki~~~q~G~~yLTShRiiyvD~~ 60 (566)
T 1w7p_D 3 YWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60 (566)
T ss_dssp ----------------------------------------------------------
T ss_pred ccccccccccCCcccCCCceEEEeecccccccCCcCCccccCceEEEEeeeEEEecCC
Confidence 345555443 33458999999999999999844 4699999999999999874
No 6
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=88.44 E-value=3 Score=37.40 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCce--EEEecCcE
Q psy9054 16 EPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLG--FALEYPRI 67 (156)
Q Consensus 16 ~p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G--~si~YpsI 67 (156)
-|+|.|.....+|..+-.-..--.|+||||+-+|+|.+.+.... +.||+..|
T Consensus 10 LpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I 63 (528)
T 1zsq_A 10 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVI 63 (528)
T ss_dssp CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGE
T ss_pred CCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccce
Confidence 36888888877777542222234899999999999999744333 44444444
No 7
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=86.29 E-value=4.9 Score=36.99 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=35.5
Q ss_pred CCCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCc--eEEEecCcE
Q psy9054 16 EPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGL--GFALEYPRI 67 (156)
Q Consensus 16 ~p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~--G~si~YpsI 67 (156)
-|+|.|.....+|...-....--.|+||||+-+|+|.+.+... -+.||+..|
T Consensus 82 LPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I 135 (657)
T 1lw3_A 82 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVI 135 (657)
T ss_dssp CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGE
T ss_pred CCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccce
Confidence 4589999888888753222222489999999999999874332 345555444
No 8
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=80.35 E-value=15 Score=26.94 Aligned_cols=77 Identities=10% Similarity=0.158 Sum_probs=47.5
Q ss_pred eEEEEecceEEEeeCC--CC---ceEEEecCcEEEEEEecCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCC
Q psy9054 40 GTLYIAESKLQWTNSS--SG---LGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDE 114 (156)
Q Consensus 40 GtL~Vt~~~l~w~~~~--~~---~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e~ 114 (156)
..+..|++||+..+.. ++ .=.+|||.+|+--++-....-....-|-+-+... .
T Consensus 43 D~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~isg~----------------------~ 100 (126)
T 3hsa_A 43 DLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWISGQ----------------------H 100 (126)
T ss_dssp EEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEETTC----------------------S
T ss_pred ceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEcCC----------------------c
Confidence 6677899999999962 22 2379999999888877654311112233333211 0
Q ss_pred CceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 115 GSMIEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 115 ~~~~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
.+ .++.| .....+..+|++|+++-
T Consensus 101 ~p-i~~~f--~k~~di~~i~k~La~~v 124 (126)
T 3hsa_A 101 EP-LVXEL--XRGTDVVGIQXTIARYA 124 (126)
T ss_dssp SC-EEEEE--CTTSCHHHHHHHHHHHH
T ss_pred eE-EEEec--cCcccHHHHHHHHHHHh
Confidence 11 33433 44567999999998763
No 9
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=67.98 E-value=35 Score=30.37 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=48.6
Q ss_pred ceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy9054 38 GTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSM 117 (156)
Q Consensus 38 g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~ 117 (156)
-.|+||||+-+|+|.+. ..+-+-|+|+.|. .|.+.... ...-.++|-.+ +..+
T Consensus 25 ~~GtL~lTn~~LiF~~~-~~~e~wi~~~~I~--~VeK~~~~--~~~~~l~I~CK----------------------Dfr~ 77 (512)
T 2yf0_A 25 LTGTLYLTATHLLFIDS-HQKETWILHHHIA--SVEKLALT--TSGCPLVIQCK----------------------NFRT 77 (512)
T ss_dssp CEEEEEECSSEEEEEES-SSCEEEEEGGGEE--EEEECCCB--TTBEEEEEEET----------------------TSCE
T ss_pred eeEEEEEECCEEEEeCC-CCCceEeccccee--EEEEecCC--CCCceEEEEec----------------------CCcE
Confidence 49999999999999996 4566788888765 55554210 01123444443 1223
Q ss_pred eEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 118 IEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 118 ~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
++|.-........+|++|.+++
T Consensus 78 --~~f~f~~~~~~~~v~~sL~~~~ 99 (512)
T 2yf0_A 78 --VHFIVPRERDCHDIYNSLLQLS 99 (512)
T ss_dssp --EEEEESCHHHHHHHHHHHHHHS
T ss_pred --EEEEeCChHHHHHHHHHHHhhc
Confidence 4555455566788999998876
No 10
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=56.07 E-value=17 Score=26.73 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEE
Q psy9054 35 ENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHA 71 (156)
Q Consensus 35 ~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHA 71 (156)
..+|.|.|.||...|+++.. ....+..||..|==-+
T Consensus 24 ~e~g~~~L~lt~~~L~L~~~-~~~~~~Wp~~~LRrYG 59 (129)
T 1xr0_B 24 NELGSGIMELTDTELILYTR-KRDSVKWHYLCLRRYG 59 (129)
T ss_dssp CCCCCEEEEECSSCEEEEET-TTEEEEECSTTEEEEE
T ss_pred CcceeEEEEEecCEEEEEeC-CCCeeEcchHHhhhcC
Confidence 33699999999999998876 4456777777554333
No 11
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=43.44 E-value=89 Score=22.46 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=36.2
Q ss_pred eeEEEEecc----eEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054 39 TGTLYIAES----KLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVERE 91 (156)
Q Consensus 39 ~GtL~Vt~~----~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~ 91 (156)
.|.|.|++. .|.|.+.+....++|++..|+ .++..+..- |-+-+-|-..
T Consensus 13 ~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It--~LQqTp~ts--~KvmLKI~~k 65 (115)
T 1y5o_A 13 SGIIAINEDVSPAELTWRSTDGDKVHTVVLSTID--KLQATPASS--EKMMLRLIGK 65 (115)
T ss_dssp EEEEEEECSSSSCEEEEEESSSSCEEEEESTTCS--EEEECCTTC--SSEEEEEEEC
T ss_pred ccEEEEccCCCcceEEEEECCCCccEEEEhhhhh--hhhcCCCCC--CceEEEEEEe
Confidence 699999999 899999756788999999986 477665533 4454544433
No 12
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=33.55 E-value=1.7e+02 Score=22.80 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=46.8
Q ss_pred EEEEecceEEEeeCCC-----CceEEEecC--cEEEEEEecCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q psy9054 41 TLYIAESKLQWTNSSS-----GLGFALEYP--RITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDD 113 (156)
Q Consensus 41 tL~Vt~~~l~w~~~~~-----~~G~si~Yp--sI~LHAIsrd~~~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e 113 (156)
.+..|+.||+.++... ..=.+|||. +|+--+|-....-....-|-+.+...
T Consensus 40 ~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtfDlDaElki~i~~~---------------------- 97 (193)
T 3b77_A 40 EYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTVDLDVEIKFEIGGK---------------------- 97 (193)
T ss_dssp EEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSSCCEEEEEEEETTE----------------------
T ss_pred EEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecceeccCccEEEEEcCc----------------------
Confidence 5678999999999522 233789999 98888887654422222233333211
Q ss_pred CCceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 114 EGSMIEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 114 ~~~~~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
...+.|--.....+..+|.+|-.-+
T Consensus 98 ---~~~Ief~K~~~~di~~lyk~L~~is 122 (193)
T 3b77_A 98 ---HYSIDVDKKQLEHVKDLYKALLAIA 122 (193)
T ss_dssp ---EEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred ---eEEEEeCCcchhhHHHHHHHHHHHH
Confidence 1235555544567888888876544
No 13
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=30.37 E-value=39 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.6
Q ss_pred cceeEEEEecceEEEeeCCCCceEEEecCcE
Q psy9054 37 LGTGTLYIAESKLQWTNSSSGLGFALEYPRI 67 (156)
Q Consensus 37 ~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI 67 (156)
+|.|.|-||...|+++.. ...-+..||..|
T Consensus 33 ~G~~~L~Lt~~~L~L~~~-~~~~~~WPy~~L 62 (146)
T 2kup_A 33 LGSGVMELTQSELVLHLH-RREAVRWPYLCL 62 (146)
T ss_dssp EEEEEEEECSSCEEEECS-SSCCEEECGGGC
T ss_pred ceeEEEEEccCEEEEEcC-CCCeeEcCHHHh
Confidence 599999999999998876 345567777654
No 14
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=29.25 E-value=50 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.0
Q ss_pred cceeEEEEecceEEEeeCCCCceEEEecCcEEEEE
Q psy9054 37 LGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHA 71 (156)
Q Consensus 37 ~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHA 71 (156)
.|.+.|-||...|.++... ..-+..||..|==-+
T Consensus 33 ~G~~~L~lt~~~L~L~~~~-~~~~~WPy~~LRRYG 66 (153)
T 2kuq_A 33 LGSGVMELTQSELVLHLHR-REAVRWPYLCLRRYG 66 (153)
T ss_dssp EEEEEEEECSSCEEEECSS-SCCEEECGGGEEEEE
T ss_pred eeeEEEEEcCCEEEEEeCC-CCceEccHHHhhhcC
Confidence 5999999999999998773 345677776554333
No 15
>3qh6_A CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia trachomatis} PDB: 3qh7_A
Probab=28.99 E-value=25 Score=26.39 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCCCceEEecCCEEEE--ecCCCcceeEEEEecc--eEEEeeCCCCceEEEecCcEE
Q psy9054 16 EPSGNVLHQEPATTAY--IENENLGTGTLYIAES--KLQWTNSSSGLGFALEYPRIT 68 (156)
Q Consensus 16 ~p~e~v~~~~~~~~l~--~~~~~~g~GtL~Vt~~--~l~w~~~~~~~G~si~YpsI~ 68 (156)
-|+|.|...+.+.+++ +.+...|.|-.|+-+= .|.|+.. ...|+-+-|.|.+
T Consensus 99 ~~geeI~~~eeDC~l~L~LSGe~aG~g~FF~G~YP~dly~~~~-~~t~llL~FSSaG 154 (157)
T 3qh6_A 99 QKQEEILFDDCDCSVLLCLSGEKAGWGLFFSGEYPQDVFDWGA-GDTAIILRFSSAG 154 (157)
T ss_dssp SSGGGCCCCCSSEEEEEECSSTTTTCEEEECSSCCTTTCCCCT-TCCEEEEEEECC-
T ss_pred cCCCccccCCCCeEEEEEecCCcccceEEEeCCCcccccCCCC-CCeEEEEEeecCC
Confidence 3788899999988865 4677889998888553 3777776 5677777776644
No 16
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=27.48 E-value=80 Score=21.96 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=24.1
Q ss_pred cceeEEEEecceEEEeeCCCC--ceEEEecCcEE
Q psy9054 37 LGTGTLYIAESKLQWTNSSSG--LGFALEYPRIT 68 (156)
Q Consensus 37 ~g~GtL~Vt~~~l~w~~~~~~--~G~si~YpsI~ 68 (156)
.|.+.|-||+..|.++...+. .=+..||..|=
T Consensus 20 ~G~~~L~l~~~~l~L~~~~~~~~~l~~Wp~~~LR 53 (103)
T 1j0w_A 20 HGECALQITYEYICLWDVQNPRVKLISWPLSALR 53 (103)
T ss_dssp CEEEEEEECSSEEEEEESSSTTBEEEEEEGGGEE
T ss_pred CccEEEEECCCEEEEEecCCCCcceEEeeHHHHh
Confidence 389999999999998876332 35788888543
No 17
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=23.77 E-value=18 Score=25.48 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=17.7
Q ss_pred ceEEEeeCCCCceEEE------ecCcEEEEEEec
Q psy9054 47 SKLQWTNSSSGLGFAL------EYPRITIHAISR 74 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si------~YpsI~LHAIsr 74 (156)
=|+.|++. .||.+ +|..+.|||=++
T Consensus 54 Yrf~WyD~---~G~~v~~~~~~~W~~~~l~g~~~ 84 (107)
T 4gio_A 54 YKVDWLDK---DGFVLRDVLNEDYQALRIPAGQE 84 (107)
T ss_dssp EEEEEECT---TSCBCCSSCCCCCEEEEECTTCC
T ss_pred EEEEEECC---CCCCcCCCCCCCCEEEEEcCCCe
Confidence 47899998 67766 366777776443
No 18
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=23.38 E-value=45 Score=21.69 Aligned_cols=17 Identities=18% Similarity=0.314 Sum_probs=13.0
Q ss_pred ceEEEeeCCCCceEEEe
Q psy9054 47 SKLQWTNSSSGLGFALE 63 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~ 63 (156)
-+|.||+.+.+-||--+
T Consensus 5 G~Vkwfn~~KGfGFI~~ 21 (74)
T 2k5n_A 5 GTITTWFKDKGFGFIKD 21 (74)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCeEEEec
Confidence 35899999777887554
No 19
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=21.43 E-value=52 Score=21.42 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.0
Q ss_pred ceEEEeeCCCCceEEEe
Q psy9054 47 SKLQWTNSSSGLGFALE 63 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~ 63 (156)
-+|.||+.+.+-||--+
T Consensus 3 G~Vkwfn~~KGfGFI~~ 19 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQG 19 (74)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCCEEEEec
Confidence 35899999778887554
No 20
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=20.32 E-value=65 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.355 Sum_probs=19.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHhhh
Q psy9054 118 IEIRLVPQDKTALEDIFMAMNQCQ 141 (156)
Q Consensus 118 ~Elr~vP~d~~~l~~if~Ams~C~ 141 (156)
.-+++.-.+..++++||++|+++.
T Consensus 57 vtv~i~a~s~eq~~~iY~~L~~~~ 80 (86)
T 2h9z_A 57 FNVSMEVSNESERNEIFQKISQLD 80 (86)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS
T ss_pred EEEEEEECCHHHHHHHHHHHhcCC
Confidence 447777778889999999998753
No 21
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=20.15 E-value=59 Score=20.37 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=15.8
Q ss_pred ceEEEeeCCCCceEEEec--CcEEEE
Q psy9054 47 SKLQWTNSSSGLGFALEY--PRITIH 70 (156)
Q Consensus 47 ~~l~w~~~~~~~G~si~Y--psI~LH 70 (156)
-+|.||+...+-||--+= ..|=+|
T Consensus 4 G~Vk~fn~~kGfGFI~~~~g~dvFvH 29 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVEGGSDVFVH 29 (66)
T ss_dssp EEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred eEEEEEECCCCeEEEecCCCccEEEE
Confidence 468999997777875542 244444
Done!