RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9054
         (156 letters)



>gnl|CDD|217597 pfam03517, ICln_channel, Nucleotide-sensitive chloride
          conductance regulator (ICln).  ICln is a ubiquitously
          expressed multi-functional protein that plays a
          critical role in regulating volume decrease in cells
          after cellular swelling. In plants, ICln induces Cl-
          currents, thus regulating Cl- homoeostasis in
          eukaryotes. Structurally, the fold resembles a
          pleckstrin homology fold, on of whose roles is to
          recruit and tether their host protein to the cell
          membrane; and although the surface charges of the ICln
          fold are not equivalent to those of the PH domain, ICln
          can be phosphorylated in vitro and the PH-nature of the
          domain may be the part involving it in the
          transposition from cytosol to cell membrane during
          cytotonic swelling.
          Length = 52

 Score = 74.6 bits (184), Expect = 8e-19
 Identities = 24/51 (47%), Positives = 34/51 (66%)

Query: 40 GTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVER 90
          GTL++  S+L W ++  G G ++ YP I++HAISRD   F   CIYLQ+E 
Sbjct: 1  GTLFVTSSRLIWWSNELGSGLSIPYPSISLHAISRDPEAFPRPCIYLQLEL 51


>gnl|CDD|241383 cd13229, PH_TFIIH, Transcription Factor II H (TFIIH) Pleckstrin
          homology (PH) domain.  The transcription factor II H
          (TFIIH) is one of the general transcription factors
          (GTFs) known to be a target of the transactivation
          domain (TAD) of p53. Human TFIIH and its homologous
          yeast counterpart (factor b) are composed of ten
          subunits that can be divided into two groups, the core
          TFIIH (XPB/Ssl2, p62/Tfb1, p52/Tfb2, p44/Ssl1,
          p34/Tfb4, and TTDA/Tfb5 in human/yeast) and the CAK
          complex (cdk7/Kin28, cyclin H/Ccl1, and MAT1/Tfb3).
          These two complexes are linked by the XPD/Rad3 subunit.
          The helicase activities of XPB and XPD are essential to
          the formation of the open complex during transcription
          initiation and the kinase activity of cdk7
          phosphorylates the C-terminal domain (CTD) of the RNA
          Pol II largest subunit, enabling RNA Pol II to progress
          from the initiation phase to the elongation phase of
          transcription. The PH domain of p62/Tfb1 has been shown
          to interact with herpes simplex virus protein 16 (VP16)
          TAD and the binding of p53 TAD is mediated by the TAD2
          subdomain. TFIIE recruits TFIIH to complete the
          preinitiation complex (PIC) formation and regulates
          enzymatic activities of TFIIH. The PH domain of the
          human TFIIH p62 subunit binds to the C-terminal acidic
          (AC) domain of the human TFIIEalpha subunit. This
          interaction could be a switch to replace p53 with TFIIE
          on TFIIH in transcription. PH domains have diverse
          functions, but in general are involved in targeting
          proteins to the appropriate cellular location or in the
          interaction with a binding partner. They share little
          sequence conservation, but all have a common fold,
          which is electrostatically polarized. Less than 10% of
          PH domains bind phosphoinositide phosphates (PIPs) with
          high affinity and specificity. PH domains are
          distinguished from other PIP-binding domains by their
          specific high-affinity binding to PIPs with two vicinal
          phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
          PtdIns(3,4,5)P3 which results in targeting some PH
          domain proteins to the plasma membrane. A few display
          strong specificity in lipid binding. Any specificity is
          usually determined by loop regions or insertions in the
          N-terminus of the domain, which are not conserved
          across all PH domains. PH domains are found in cellular
          signaling proteins such as serine/threonine kinase,
          tyrosine kinases, regulators of G-proteins, endocytotic
          GTPases, adaptors, as well as cytoskeletal associated
          molecules and in lipid associated enzymes.
          Length = 94

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 38 GTGTLYIAESKLQWT-NSSSGLGFALEYPRITIHAISRDTN 77
            GTLY++ES+L W  +       ++ Y  I    IS + +
Sbjct: 12 KDGTLYLSESRLTWKPSGGDSPPISIPYSDIKNQQISPEGS 52


>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
           factor RRN3.  This family consists of several eukaryotic
           proteins which are homologous to the yeast RRN3 protein.
           RRN3 is one of the RRN genes specifically required for
           the transcription of rDNA by RNA polymerase I (Pol I) in
           Saccharomyces cerevisiae.
          Length = 554

 Score = 31.9 bits (73), Expect = 0.10
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 87  QVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALE-----DIFMAM 137
            ++ E+ +       D  +++  D DD+        V +  T  E     D  M +
Sbjct: 224 DIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKLDAIMDL 279


>gnl|CDD|221144 pfam11595, DUF3245, Protein of unknown function (DUF3245).  This is
           a family of proteins conserved in fungi. The function is
           not known, and there is no S. cerevisiae member.
          Length = 145

 Score = 29.2 bits (65), Expect = 0.61
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 94  DEGDGAGGDIGDEEDDDDDDEG 115
            E   +   +GD++DDDD+DE 
Sbjct: 109 KEAKQSSKGVGDDDDDDDEDES 130


>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex.  This Mediator
           complex subunit was formerly known as Srb4 in yeasts or
           Trap80 in Drosophila and human. The Med17 subunit is
           located within the head domain and is essential for cell
           viability to the extent that a mutant strain of
           cerevisiae lacking it shows all RNA polymerase
           II-dependent transcription ceasing at non-permissive
           temperatures.
          Length = 454

 Score = 29.6 bits (67), Expect = 0.67
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 87  QVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDK---TALEDIFMAMNQC 140
           ++ +E +        D  +++++DD+D+    +  +    K     LE +  A+N+ 
Sbjct: 57  EIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEVLEQLNQALNES 113


>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P.  The
           nuclear RNase P of Saccharomyces cerevisiae is made up
           of at least nine protein subunits; Pop1, Pop3, Pop4,
           Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these
           subunits seem to be present also in the RNase MRP, with
           the exception of Rpr2 (Rpp21) which is unique to RNase
           P. Human nuclear RNase P and MRP appear to contain at
           least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25,
           Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although
           there is recent evidence that not all of these subunits
           are shared between P and MRP. Archaeal RNase P has at
           least four protein subunits homologous to eukaryotic
           RNase P/MRP proteins. In the yeast RNase P, Pop6 and
           Pop7 (the Rpp20 homologue) interact with each other and
           they are both interaction partners of Pop4; in the human
           MRP Rpp25 and Rpp20 interact with each other and Rpp25
           binds to Rpp29 (Pop4).
          Length = 108

 Score = 27.6 bits (62), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 7/27 (25%)

Query: 102 DIGDEEDDDDDDE-------GSMIEIR 121
           +I ++EDDDDD+E        S +E+R
Sbjct: 82  EIVEDEDDDDDEEPETRKRTVSAVEVR 108


>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger.  [Transport and
           binding proteins, Cations and iron carrying compounds].
          Length = 1096

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 89  EREKSDEGDGAGGDIGDEEDDDDDDE 114
           E+     G   GGD  +EE++++++E
Sbjct: 849 EKGVDGGGGSDGGDSEEEEEEEEEEE 874


>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein.  This family consists of several
           NOA36 proteins which contain 29 highly conserved
           cysteine residues. The function of this protein is
           unknown.
          Length = 314

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 91  EKSDEGDGAGGDIGDEEDDDDDD 113
           E  D+   +  D  +EED DDDD
Sbjct: 272 ESDDDEGSSSNDYDEEEDGDDDD 294


>gnl|CDD|224819 COG1907, COG1907, Predicted archaeal sugar kinases [General
          function prediction only].
          Length = 312

 Score = 28.1 bits (63), Expect = 2.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 57 GLGFALEYPRITIHAISRDTNHFAEECIYLQVERE 91
          G+G ALE PR+ I A   D      E    +VE+ 
Sbjct: 27 GVGLALEEPRLEIEAKPSDDIEVDGEDRRERVEKA 61


>gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2.
          Length = 581

 Score = 28.1 bits (62), Expect = 2.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 88  VEREKSDEGDGAGGDIGDEEDDDDD 112
           ++R KS + + + GD  D++DD +D
Sbjct: 282 IQRNKSVDKNDSNGDDDDDDDDGED 306


>gnl|CDD|143494 cd06820, PLPDE_III_LS_D-TA_like, Type III Pyridoxal 5-phosphate
           (PLP)-Dependent Enzymes, Low Specificity D-Threonine
           Aldolase-like.  This subfamily is composed of
           uncharacterized bacterial proteins with similarity to
           low specificity D-threonine aldolase (D-TA), which is a
           fold type III PLP-dependent enzyme that catalyzes the
           interconversion between D-threonine/D-allo-threonine and
           glycine plus acetaldehyde. Both PLP and divalent cations
           (eg. Mn2+) are required for catalytic activity. Low
           specificity D-TAs show similarity to bacterial alanine
           racemase (AR), which contains an N-terminal PLP-binding
           TIM-barrel domain and a C-terminal beta-sandwich domain.
           AR exists as homodimers with active sites that lie at
           the interface between the TIM barrel domain of one
           subunit and the beta-sandwich domain of the other
           subunit. Based on its similarity to AR, it is possible
           that low specificity D-TAs also form dimers in solution.
           Experimental data show that the monomeric form of low
           specificity D-TAs exhibit full catalytic activity.
          Length = 353

 Score = 27.7 bits (62), Expect = 2.6
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 37  LGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAIS 73
           L  G+  +   +   T    G G  LEYP   I  +S
Sbjct: 264 LDAGSKALTSDRGTGTT---GYGHLLEYPDARIVGLS 297


>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
          Length = 619

 Score = 27.8 bits (63), Expect = 2.6
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 89  EREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDK-------TALEDIFMAMNQCQ 141
           E + +  G        DE++++++DE          +          AL   +  + + Q
Sbjct: 179 EEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQ 238

Query: 142 KLH 144
           +  
Sbjct: 239 EKK 241


>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
          Length = 80

 Score = 26.3 bits (58), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 89  EREKSDEGDGAGGDIGDEEDDDDDDE 114
           + E  D+ D       D++DDD+DDE
Sbjct: 55  DDEDDDDDDDKDDKDDDDDDDDEDDE 80


>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
          Length = 390

 Score = 27.5 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 87  QVEREKSDEGDGAGGDIGDEEDDDDDDEG 115
              RE+ +E +    D  D++ D+DDDEG
Sbjct: 355 DYHREQLEEVEEEDDDDWDDDWDEDDDEG 383


>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
          Length = 1113

 Score = 27.6 bits (62), Expect = 3.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 40  GTLYIAESKLQW--TNSSSGLGFAL 62
            TL ++  KLQW     S GLGF L
Sbjct: 896 STLGVSWDKLQWLVAALSVGLGFGL 920


>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin.  Nucleoplasmins are also
           known as chromatin decondensation proteins. They bind to
           core histones and transfer DNA to them in a reaction
           that requires ATP. This is thought to play a role in the
           assembly of regular nucleosomal arrays.
          Length = 146

 Score = 26.9 bits (60), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 91  EKSDEGDGAGGDIGDEEDDDDDDE 114
            + DE D    D  +E+D++DDDE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDE 132


>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A.  The CAF-1
           or chromatin assembly factor-1 consists of three
           subunits, and this is the first, or A. The A domain is
           uniquely required for the progression of S phase in
           mouse cells, independent of its ability to promote
           histone deposition but dependent on its ability to
           interact with HP1 - heterochromatin protein 1-rich
           heterochromatin domains next to centromeres that are
           crucial for chromosome segregation during mitosis. This
           HP1-CAF-1 interaction module functions as a built-in
           replication control for heterochromatin, which, like a
           control barrier, has an impact on S-phase progression in
           addition to DNA-based checkpoints.
          Length = 76

 Score = 26.0 bits (58), Expect = 3.5
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 95  EGDGAGGDIGDEEDDDDDDEG 115
           E +  G D+  E+++D++++ 
Sbjct: 49  EEEEEGEDLESEDEEDEEEDD 69


>gnl|CDD|220102 pfam09073, BUD22, BUD22.  BUD22 has been shown in yeast to be a
           nuclear protein involved in bud-site selection. It plays
           a role in positioning the proximal bud pole signal. More
           recently it has been shown to be involved in ribosome
           biogenesis.
          Length = 424

 Score = 27.1 bits (60), Expect = 3.9
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 89  EREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALED 132
           + E+S+  D +  +    EDD DD+E    +     Q    L D
Sbjct: 171 DEEESESEDESKSEE-SAEDDSDDEEEEDSDSEDYSQYDGMLVD 213


>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family.  Emg1 and Nop14 are novel
           proteins whose interaction is required for the
           maturation of the 18S rRNA and for 40S ribosome
           production.
          Length = 809

 Score = 27.3 bits (61), Expect = 4.0
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 85  YLQVEREKSDEGDGAGGDIGDEEDDDDDDEGS 116
            L    E  +E +  G D  DEEDDDDD E  
Sbjct: 315 GLGQGEEDEEEEE-DGVDDEDEEDDDDDLEEE 345


>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein.  This family consists of several
           eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
           to suppress GCR2 and is highly expressed in the muscle
           and heart. The function of this family is unknown
           although it has been speculated that SGT1 may be
           functionally analogous to the Gcr2p protein of
           Saccharomyces cerevisiae which is known to be a
           regulatory factor of glycolytic gene expression.
          Length = 557

 Score = 27.0 bits (60), Expect = 4.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 92  KSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQ 139
           K DE D    D  D+ D+DDD++    E          LE+    M+ 
Sbjct: 473 KDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDA 520


>gnl|CDD|165416 PHA03145, PHA03145, helicase-primase primase subunit; Provisional.
          Length = 1058

 Score = 26.9 bits (59), Expect = 5.2
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 91  EKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDI 133
           E   +G       G  +++DD+D  +         ++ A  D 
Sbjct: 691 EYDGDGPWFPAGGGPGDEEDDEDPDAEALAHGGVDEEAAYLDA 733


>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
           chain; Provisional.
          Length = 1033

 Score = 27.1 bits (60), Expect = 5.3
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 87  QVEREKSDEGDGAGGDIGDEEDDDDDDEG 115
           +     SD+ +    D  ++E+DD++ E 
Sbjct: 23  RSAGSDSDDDEVPAEDEDEDEEDDEEAES 51



 Score = 26.3 bits (58), Expect = 8.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 89  EREKSDEGDGAGGDIGDEEDDDDDDEGSMIEI 120
             +  D+   A  +  DEEDD++ +  +  EI
Sbjct: 26  GSDSDDDEVPAEDEDEDEEDDEEAESPAKAEI 57


>gnl|CDD|223760 COG0688, Psd, Phosphatidylserine decarboxylase [Lipid metabolism].
          Length = 239

 Score = 26.5 bits (59), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 104 GDEEDDDDDDEGSMIEIRLVPQD 126
            D+E    D +G+ + I L P D
Sbjct: 101 PDDELAYGDRDGTRVSIFLSPFD 123


>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
           Rpc31.  RNA polymerase III contains seventeen subunits
           in yeasts and in human cells. Twelve of these are akin
           to RNA polymerase I or II and the other five are RNA pol
           III-specific, and form the functionally distinct groups
           (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
           Rpc34 and Rpc82 form a cluster of enzyme-specific
           subunits that contribute to transcription initiation in
           S.cerevisiae and H.sapiens. There is evidence that these
           subunits are anchored at or near the N-terminal Zn-fold
           of Rpc1, itself prolonged by a highly conserved but RNA
           polymerase III-specific domain.
          Length = 221

 Score = 26.6 bits (59), Expect = 6.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 89  EREKSDEGDGAGGDIGDEEDDDDDDE 114
           + ++ DE D    +  +EED+D DD+
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDDD 192



 Score = 25.9 bits (57), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 89  EREKSDEGDGAGGDIGDEEDDDDDDEG 115
           E EK +E +    +  ++ DDDDDD+ 
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDDDDD 197


>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
          Length = 1634

 Score = 26.8 bits (59), Expect = 6.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 103  IGDEEDDDDDDEGSMIEIRLVPQDKTALEDI 133
            +G   DD+DDDE   +  + V Q + +LE +
Sbjct: 1560 VGQVPDDEDDDEDGDVLEKEVDQLQQSLERL 1590


>gnl|CDD|117708 pfam09153, DUF1938, Domain of unknown function (DUF1938).  Members
           of this family, which are predominantly found in the
           archaeal protein O6-alkylguanine-DNA alkyltransferase,
           adopt a secondary structure consisting of a three
           stranded antiparallel beta-sheet and three alpha
           helices. Their exact function has not, as yet, been
           defined, though it has been postulated that they confer
           thermostability to the archaeal protein.
          Length = 86

 Score = 25.1 bits (55), Expect = 8.2
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 51  WTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGA----GGDIGDE 106
           W     G+ F+L+      H ISR  +H  +  + L ++ + SD  +       G I +E
Sbjct: 20  WEEKIQGIAFSLDGGEFLKHRISRLISHLGKRGVSLSLKEQPSDYPELVFKVLIGKISNE 79

Query: 107 E 107
           E
Sbjct: 80  E 80


>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
           Reviewed.
          Length = 129

 Score = 25.4 bits (56), Expect = 9.1
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 88  VEREKSDEGDGAGGDIGDEEDDDDDDE 114
           ++ +   + D    D+ +E+D+D++DE
Sbjct: 102 IDDDILPDDDFDEEDLDEEDDEDEEDE 128


>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region.  The domain
           is found in the primary vegetative sigma factor. The
           function of this domain is unclear and can be removed
           without loss of function.
          Length = 211

 Score = 26.0 bits (58), Expect = 9.4
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 91  EKSDEGDGAGGDIGDEEDDDDDDEGSM 117
            +S+  +    D  D+++D+D+D+   
Sbjct: 44  IESELDEEDLEDDDDDDEDEDEDDEEE 70


>gnl|CDD|218538 pfam05285, SDA1, SDA1.  This family consists of several SDA1
           protein homologues. SDA1 is a Saccharomyces cerevisiae
           protein which is involved in the control of the actin
           cytoskeleton. The protein is essential for cell
           viability and is localised in the nucleus.
          Length = 317

 Score = 26.2 bits (58), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 93  SDEGDGAGGDIGDEEDDDDDDEGSMIEI 120
           SD+ D    +   EED+D DDEG  I++
Sbjct: 94  SDDDDDEEEEWEVEEDEDSDDEGEWIDV 121


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,069,043
Number of extensions: 726081
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 95
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (24.9 bits)