RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9054
         (156 letters)



>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA
           splicing, translation; NMR {Canis lupus familiaris}
          Length = 171

 Score =  119 bits (298), Expect = 4e-35
 Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 5/136 (3%)

Query: 15  PEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISR 74
           P  +  +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I++HA+SR
Sbjct: 19  PGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTISLHAVSR 77

Query: 75  DTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIF 134
           D N +  E +Y+ V  +  +E   +      EE+D DDD   + E R VP DK+ALE +F
Sbjct: 78  DLNAYPREHLYVMVNAKFGEESKESV----AEEEDSDDDVEPIAEFRFVPSDKSALEAMF 133

Query: 135 MAMNQCQKLHPDPDQS 150
            AM +CQ LHPDP+  
Sbjct: 134 TAMCECQALHPDPEDE 149


>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB
          domain, structural proteomics in europe, spine,
          structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9
          PDB: 2rnr_B
          Length = 108

 Score = 31.5 bits (71), Expect = 0.035
 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 40 GTLYIAESKLQWT-NSSSGLGFALEYPRITIHAISRDT 76
          G LY+   ++ W          +  Y  I    IS + 
Sbjct: 22 GALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEG 59


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 2.6
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 6/32 (18%)

Query: 126 DKTALEDIFMAMNQCQKLHPDPDQSP-LSGNG 156
           +K AL+ +  ++    KL+   D +P L+   
Sbjct: 18  EKQALKKLQASL----KLYA-DDSAPALAIKA 44


>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
           chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
           {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
           3c9b_A 3q33_B* 3q35_B* 3dm7_A
          Length = 264

 Score = 26.2 bits (57), Expect = 4.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 85  YLQVEREKSDEGDGAGGDIGDEEDDDDDDEG 115
           Y + +R+  DE   +G     + +DDD   G
Sbjct: 216 YAEAQRDLEDEEGESGLSADGDSEDDDGSLG 246


>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
           2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
           3bw3_A*
          Length = 369

 Score = 26.2 bits (58), Expect = 4.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 95  EGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTAL 130
           +G  AGG  G   D  +DD   +  + L+ Q + A+
Sbjct: 172 QGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV 207


>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 402

 Score = 26.0 bits (56), Expect = 7.1
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 82  ECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDE 114
           + +  + E    D  +  G +  D E  D   +
Sbjct: 368 DILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQ 400


>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
           {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
          Length = 417

 Score = 25.7 bits (55), Expect = 7.7
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 85  YLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIE 119
           +     E   E D    D  ++E++DDD      +
Sbjct: 360 FTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDD 394


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,424,392
Number of extensions: 138167
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 28
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.8 bits)