BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9055
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/220 (62%), Positives = 163/220 (74%), Gaps = 23/220 (10%)
Query: 61 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDE 120
RKKLE LY++YKD + +KI ++GI +F DDL+L P S VLIIAW+F+AA QCEFS+ E
Sbjct: 3 RKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQE 62
Query: 121 FMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKFKDFY 180
FM+GM ELGCDSI EKLK ++P +E ELK+ +FKDFY
Sbjct: 63 FMDGMTELGCDSI-----------------------EKLKAQIPKMEQELKEPGRFKDFY 99
Query: 181 QFTFNYAKNPGQKGLDLDMAITYWNIVLQGRFKFLHLWCTFLQEHHKRSIPKDTWNLLLD 240
QFTFN+AKNPGQKGLDL+MAI YWN+VL GRFKFL LW FL EHHKRSIPKDTWNLLLD
Sbjct: 100 QFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPKDTWNLLLD 159
Query: 241 FATATNEDMSNYDEEGAWPVLIDDFVEWAQPQVKAANQPT 280
F+T +DMSNYDEEGAWPVLIDDFVE+A+PQ+ T
Sbjct: 160 FSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTT 199
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 280 bits (715), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 136/218 (62%), Positives = 157/218 (72%), Gaps = 23/218 (10%)
Query: 61 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDE 120
+KKLE LY +YKD + +KI V+GI +F DDLSL P S VL+IAW+F+AA QCEFSR E
Sbjct: 3 KKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKE 62
Query: 121 FMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKFKDFY 180
F++GM ELGCDS+E KLK LP LE ELKD KFKDFY
Sbjct: 63 FLDGMTELGCDSME-----------------------KLKALLPRLEQELKDTAKFKDFY 99
Query: 181 QFTFNYAKNPGQKGLDLDMAITYWNIVLQGRFKFLHLWCTFLQEHHKRSIPKDTWNLLLD 240
QFTF +AKNPGQKGLDL+MA+ YW +VL GRFKFL LW TFL EHHKRSIP+DTWNLLLD
Sbjct: 100 QFTFTFAKNPGQKGLDLEMAVAYWKLVLSGRFKFLDLWNTFLMEHHKRSIPRDTWNLLLD 159
Query: 241 FATATNEDMSNYDEEGAWPVLIDDFVEWAQPQVKAANQ 278
F +DMSNYDEEGAWPVLIDDFVE+A+P V +
Sbjct: 160 FGNMIADDMSNYDEEGAWPVLIDDFVEYARPVVTGGKR 197
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 124/212 (58%), Gaps = 29/212 (13%)
Query: 59 VDRKKLESLYSKYKDASEP--DKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEF 116
D+K + L+ YK EP + I EG+ + +D+ + P + L++AW+ KA++ EF
Sbjct: 4 ADKKAILELFQTYK---EPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXEF 60
Query: 117 SRDEFMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKF 176
S EF+ G+ NL DS+EKLK +L SL E++D KF
Sbjct: 61 SEKEFVEGLA-----------------------NLQVDSLEKLKRKLSSLRKEIEDPSKF 97
Query: 177 KDFYQFTFNYAKNPGQKGLDLDMAITYWNIVLQGRFKFLHLWCTFLQEHHKRSIPKDTWN 236
+ FYQF F Y+K P Q+ L + A W+++L+GRF L W FL+ ++ SI +DTWN
Sbjct: 98 RAFYQFVFQYSKEPSQRSLPAETAXALWDVLLRGRFSLLDSWLEFLK-NNTHSISRDTWN 156
Query: 237 LLLDFATATNEDMSNYDEEGAWPVLIDDFVEW 268
LL DF+ + +D+S+YDE GAWPVLIDDFV+W
Sbjct: 157 LLYDFSQLSEKDLSDYDENGAWPVLIDDFVKW 188
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 115/222 (51%), Gaps = 29/222 (13%)
Query: 62 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEF 121
++LE L+ +YKD E D IL EG+ +F +DL + P VL++AW+F+AA C+F+R EF
Sbjct: 6 QRLEELFRRYKDERE-DAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEF 64
Query: 122 MNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKFKDFYQ 181
+G + DSI+ + C R PSL E K KFKD Y+
Sbjct: 65 FDGCKAISADSIDGI----------------C-------ARFPSLLTEAKQEDKFKDLYR 101
Query: 182 FTFNYA--KNPGQKGLDLDMAITYWNIVL-QGRFKFLHLWCTFLQEHHK--RSIPKDTWN 236
FTF + GQ+ L ++AI W +V Q L W FL E+ + I +DTWN
Sbjct: 102 FTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWN 161
Query: 237 LLLDFATATNEDMSNYDEEGAWPVLIDDFVEWAQPQVKAANQ 278
+ L+F D+SNY E+ AWP L D FVEW + K +
Sbjct: 162 MFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKREGE 203
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 125/282 (44%), Gaps = 40/282 (14%)
Query: 6 SSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDR---- 61
S +++ ++ F S T+ + L +N W ++ A ++Y+ + ++ S+V
Sbjct: 13 SPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIGTFTDEVSTVAHPPVY 72
Query: 62 -KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCE-FSRD 119
K+L ++ Y + + D ++ ++KF+++L + E L +A E R+
Sbjct: 73 PKELTQVFEHYINNNLFD---IDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKRE 129
Query: 120 EFMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKFKDF 179
+F++ GC +I + + +L+ +L ++L F
Sbjct: 130 DFLSTWFXQGCSTISDXQECIKTLDVKLHEDLQ----------------------YFTQI 167
Query: 180 YQFTFNYAKNPGQKGLDLDMAITYWNIVLQGRFK------FLHLWCTFLQEHHKRSIPKD 233
Y + FN +P +K +D D I YW + Q + L W FL++ K +I KD
Sbjct: 168 YNYAFNLILDPNRKDIDTDEGIQYWKLFFQPEYPVRXEPDLLEAWFRFLRDEGKTTISKD 227
Query: 234 TWNLLLDF---ATATNEDMSNYDEEGAWPVLIDDFVEWAQPQ 272
TW LL F + +S+YDE AWP +ID+F E Q Q
Sbjct: 228 TWRXLLLFFKRYPTIQKIISDYDETAAWPFIIDEFYECLQDQ 269
>pdb|3O2P|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
pdb|3O6B|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|C Chain C, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|G Chain G, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|I Chain I, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3TDI|B Chain B, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
pdb|3TDI|A Chain A, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
Length = 202
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 57 SSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCE- 115
SV K+L ++ Y + + D ++ ++KF+++L + E L +A E
Sbjct: 1 GSVYPKELTQVFEHYINNNLFD---IDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEP 57
Query: 116 FSRDEFMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLK 175
R++F++ GC +I ++ + +L+ +L ++L
Sbjct: 58 LKREDFLSTWFMQGCSTISDMQECIKTLDVKLHEDLQ----------------------Y 95
Query: 176 FKDFYQFTFNYAKNPGQKGLDLDMAITYWNIVLQGRFK------FLHLWCTFLQEHHKRS 229
F Y + FN +P +K +D D I YW + Q + L W FL++ K +
Sbjct: 96 FTQIYNYAFNLILDPNRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTT 155
Query: 230 IPKDTWNLLLDF---ATATNEDMSNYDEEGAWPVLIDDFVEWAQPQ 272
I KDTW +LL F + +S+YDE AWP +ID+F E Q Q
Sbjct: 156 ISKDTWRMLLLFFKRYPTIQKIISDYDETAAWPFIIDEFYECLQDQ 201
>pdb|2IS9|A Chain A, Structure Of Yeast Dcn-1
Length = 204
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 32/201 (15%)
Query: 82 VEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCE-FSRDEFMNGMLELGCDSIEKLKMRL 140
++ ++KF+++L + E L +A E R++F++ GC +I ++ +
Sbjct: 25 IDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLSTWFMQGCSTISDMQECI 84
Query: 141 PSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKFKDFYQFTFNYAKNPGQKGLDLDMA 200
+L+ +L ++L F Y + FN +P +K +D D
Sbjct: 85 KTLDVKLHEDLQ----------------------YFTQIYNYAFNLILDPNRKDIDTDEG 122
Query: 201 ITYWNIVLQGRFK------FLHLWCTFLQEHHKRSIPKDTWNLLLDF---ATATNEDMSN 251
I YW + Q + L W FL++ K +I KDTW +LL F + +S+
Sbjct: 123 IQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKRYPTIQKIISD 182
Query: 252 YDEEGAWPVLIDDFVEWAQPQ 272
YDE AWP +ID+F E Q Q
Sbjct: 183 YDETAAWPFIIDEFYECLQDQ 203
>pdb|1YGM|A Chain A, Nmr Structure Of Mistic
Length = 118
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 217 LWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDEE 255
++CTF ++HH++ W++LL+ +T E M EE
Sbjct: 5 MFCTFFEKHHRK------WDILLEKSTGVMEAMKVTSEE 37
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 78 DKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQC----EFSRDEFMNGMLELGCDSI 133
+K+L+E + + ++ + + + W A+ E R+E +N + D I
Sbjct: 270 EKMLLEDVKANITEMLAGGVNTTSMTLQWHLYEMARSLNVQEMLREEVLNARRQAEGD-I 328
Query: 134 EKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNL 174
K+ +P L+A +K+ L I R P + L+D L
Sbjct: 329 SKMLQMVPLLKASIKETLRLHPISVTLQRYPESDLVLQDYL 369
>pdb|1LJ8|A Chain A, Crystal Structure Of Mannitol Dehydrogenase In Complex
With Nad
pdb|1M2W|A Chain A, Pseudomonas Fluorescens Mannitol 2-Dehydrogenase Ternary
Complex With Nad And D-Mannitol
pdb|1M2W|B Chain B, Pseudomonas Fluorescens Mannitol 2-Dehydrogenase Ternary
Complex With Nad And D-Mannitol
Length = 493
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 243 TATNEDMSNYDEEG---AWPVLIDDFVEWA 269
T+T + +DE G AWPV+ + FV+W
Sbjct: 236 TSTAHRLQLHDEHGIDDAWPVVCEPFVQWV 265
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 56 KSSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 99
++ + R +E Y K K+ + ++ EG+ +F+D L+L E K
Sbjct: 416 QTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEK 459
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 56 KSSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 99
++ + R +E Y K K+ + ++ EG+ +F+D L+L E K
Sbjct: 390 QTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEK 433
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 56 KSSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 99
++ + R +E Y K K+ + ++ EG+ +F+D L+L E K
Sbjct: 390 QTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEK 433
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,623,313
Number of Sequences: 62578
Number of extensions: 351985
Number of successful extensions: 995
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 30
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)