Query psy9055
Match_columns 284
No_of_seqs 157 out of 466
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:47:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077|consensus 100.0 2E-71 4.3E-76 503.9 20.6 258 1-281 1-260 (260)
2 PF03556 Cullin_binding: Culli 100.0 3.4E-44 7.4E-49 293.9 9.4 106 165-270 10-117 (117)
3 PF14555 UBA_4: UBA-like domai 99.3 1.7E-12 3.6E-17 88.4 4.7 41 9-49 1-41 (43)
4 smart00804 TAP_C C-terminal do 97.5 0.00022 4.8E-09 52.5 5.0 44 3-46 7-50 (63)
5 PF03943 TAP_C: TAP C-terminal 97.4 0.00011 2.5E-09 51.8 2.8 40 9-48 1-40 (51)
6 KOG1364|consensus 96.9 0.0012 2.5E-08 63.3 4.4 45 5-49 3-48 (356)
7 PF00627 UBA: UBA/TS-N domain; 96.5 0.0069 1.5E-07 39.5 4.7 33 9-42 3-35 (37)
8 smart00165 UBA Ubiquitin assoc 95.4 0.04 8.7E-07 35.5 4.8 35 9-44 2-36 (37)
9 cd00194 UBA Ubiquitin Associat 95.1 0.058 1.3E-06 34.9 4.9 36 9-45 2-37 (38)
10 KOG3077|consensus 94.9 0.029 6.4E-07 52.1 4.0 85 175-260 79-163 (260)
11 PF13833 EF-hand_8: EF-hand do 93.1 0.28 6.1E-06 33.7 5.2 50 78-127 3-53 (54)
12 cd00051 EFh EF-hand, calcium b 92.9 0.7 1.5E-05 30.6 7.0 61 64-125 2-62 (63)
13 KOG2086|consensus 92.9 0.043 9.3E-07 53.4 1.1 43 6-48 2-44 (380)
14 PTZ00184 calmodulin; Provision 92.8 4.2 9.2E-05 32.5 13.0 66 61-127 10-75 (149)
15 cd05031 S-100A10_like S-100A10 92.8 0.5 1.1E-05 36.5 6.8 69 62-130 8-82 (94)
16 cd00052 EH Eps15 homology doma 92.7 0.53 1.2E-05 33.1 6.4 62 65-129 2-63 (67)
17 cd05029 S-100A6 S-100A6: S-100 91.9 0.82 1.8E-05 35.4 7.0 67 63-129 11-81 (88)
18 PTZ00183 centrin; Provisional 91.8 0.89 1.9E-05 37.2 7.7 67 60-127 88-154 (158)
19 PF13499 EF-hand_7: EF-hand do 91.7 0.74 1.6E-05 32.6 6.1 62 63-125 1-66 (66)
20 PTZ00184 calmodulin; Provision 90.2 1.5 3.2E-05 35.3 7.4 66 60-126 82-147 (149)
21 smart00027 EH Eps15 homology d 90.1 1.1 2.5E-05 34.6 6.3 66 61-129 9-74 (96)
22 cd05030 calgranulins Calgranul 89.3 1.2 2.7E-05 34.2 5.9 67 63-129 9-81 (88)
23 TIGR00264 alpha-NAC-related pr 88.1 0.91 2E-05 37.4 4.5 34 9-42 79-112 (116)
24 PRK06369 nac nascent polypepti 87.9 0.93 2E-05 37.3 4.5 35 9-43 77-111 (115)
25 PTZ00183 centrin; Provisional 86.9 15 0.00033 29.8 14.0 66 61-127 16-81 (158)
26 PF02845 CUE: CUE domain; Int 86.7 1.6 3.5E-05 29.0 4.4 38 9-46 2-40 (42)
27 smart00546 CUE Domain that may 86.5 2.4 5.1E-05 28.2 5.2 39 9-47 3-42 (43)
28 cd05026 S-100Z S-100Z: S-100Z 83.8 5.9 0.00013 30.7 7.1 67 63-129 11-83 (93)
29 cd05023 S-100A11 S-100A11: S-1 82.8 8.6 0.00019 29.7 7.6 68 62-129 9-82 (89)
30 COG5126 FRQ1 Ca2+-binding prot 82.3 15 0.00032 31.9 9.6 82 59-141 14-99 (160)
31 cd00213 S-100 S-100: S-100 dom 80.9 9.1 0.0002 28.7 7.1 67 62-128 8-80 (88)
32 cd05025 S-100A1 S-100A1: S-100 80.5 12 0.00027 28.5 7.8 67 62-128 9-81 (92)
33 cd05027 S-100B S-100B: S-100B 78.4 14 0.00031 28.4 7.5 67 62-128 8-80 (88)
34 KOG0027|consensus 77.1 31 0.00067 28.7 9.8 71 59-130 41-116 (151)
35 COG1308 EGD2 Transcription fac 77.0 4.6 9.9E-05 33.6 4.5 34 10-43 86-119 (122)
36 KOG0036|consensus 75.4 8.4 0.00018 38.4 6.6 74 62-136 82-155 (463)
37 KOG0027|consensus 75.3 20 0.00044 29.8 8.2 69 61-130 7-75 (151)
38 PF13405 EF-hand_6: EF-hand do 75.1 4.8 0.0001 24.6 3.3 30 63-93 1-31 (31)
39 KOG4351|consensus 74.3 0.87 1.9E-05 41.7 -0.4 45 5-49 20-67 (244)
40 cd05022 S-100A13 S-100A13: S-1 72.7 26 0.00055 27.2 7.6 67 62-128 8-76 (89)
41 PF09279 EF-hand_like: Phospho 72.1 7.7 0.00017 29.0 4.5 63 63-127 1-69 (83)
42 PF14658 EF-hand_9: EF-hand do 71.5 15 0.00033 27.3 5.7 55 73-127 8-64 (66)
43 KOG2756|consensus 71.0 3.9 8.4E-05 38.8 3.0 40 9-48 26-65 (349)
44 TIGR01446 DnaD_dom DnaD and ph 70.9 7.7 0.00017 28.3 4.1 56 79-137 15-72 (73)
45 COG5126 FRQ1 Ca2+-binding prot 70.0 22 0.00049 30.8 7.3 70 57-127 87-156 (160)
46 KOG0028|consensus 70.0 39 0.00085 29.6 8.7 79 62-141 33-113 (172)
47 PF12096 DUF3572: Protein of u 66.4 17 0.00037 28.6 5.3 59 7-100 19-77 (88)
48 cd00252 SPARC_EC SPARC_EC; ext 65.0 37 0.0008 27.7 7.3 62 60-126 46-107 (116)
49 PRK12332 tsf elongation factor 63.9 13 0.00029 33.3 4.9 39 9-47 5-43 (198)
50 CHL00098 tsf elongation factor 63.2 12 0.00026 33.6 4.5 38 10-47 3-40 (200)
51 PF00036 EF-hand_1: EF hand; 63.0 5.5 0.00012 24.5 1.6 18 111-128 12-29 (29)
52 KOG0034|consensus 62.7 1.1E+02 0.0024 27.1 12.9 136 59-239 27-173 (187)
53 TIGR00116 tsf translation elon 61.6 14 0.00031 35.0 4.9 40 8-47 4-43 (290)
54 PRK09377 tsf elongation factor 59.8 16 0.00034 34.7 4.9 40 8-47 5-44 (290)
55 PF03765 CRAL_TRIO_N: CRAL/TRI 58.8 15 0.00032 25.4 3.4 25 20-44 28-52 (55)
56 PF05517 p25-alpha: p25-alpha 58.3 36 0.00079 29.0 6.5 112 64-185 1-123 (154)
57 KOG0036|consensus 57.0 2.1E+02 0.0045 28.9 12.1 66 61-127 13-79 (463)
58 PF14229 DUF4332: Domain of un 56.2 47 0.001 27.2 6.6 56 82-141 29-85 (122)
59 KOG4380|consensus 52.6 58 0.0013 29.4 6.9 75 18-103 71-153 (244)
60 PF06972 DUF1296: Protein of u 49.6 53 0.0012 24.0 5.1 43 5-47 2-45 (60)
61 PF08671 SinI: Anti-repressor 48.0 29 0.00062 21.9 3.1 28 216-243 3-30 (30)
62 PLN02964 phosphatidylserine de 47.9 88 0.0019 33.0 8.4 64 64-128 181-244 (644)
63 PF04444 Dioxygenase_N: Catech 47.3 38 0.00083 25.6 4.3 50 214-273 11-64 (74)
64 PF09107 SelB-wing_3: Elongati 44.6 25 0.00053 24.6 2.7 22 11-32 12-33 (50)
65 PRK05441 murQ N-acetylmuramic 43.3 35 0.00076 32.2 4.4 36 12-47 239-274 (299)
66 KOG1071|consensus 43.2 34 0.00073 33.1 4.2 36 7-42 45-80 (340)
67 TIGR00274 N-acetylmuramic acid 41.8 38 0.00082 32.0 4.3 36 12-47 234-269 (291)
68 KOG0985|consensus 41.0 83 0.0018 35.3 7.0 114 60-190 693-812 (1666)
69 PLN02964 phosphatidylserine de 40.3 1.2E+02 0.0026 32.1 8.0 75 62-141 143-222 (644)
70 KOG0030|consensus 40.1 98 0.0021 26.7 6.1 66 62-128 11-78 (152)
71 PF07531 TAFH: NHR1 homology t 39.8 66 0.0014 25.7 4.7 69 84-176 12-83 (96)
72 PF04659 Arch_fla_DE: Archaeal 38.9 61 0.0013 25.9 4.4 53 215-267 21-87 (99)
73 PF06535 RGM_N: Repulsive guid 37.4 9.5 0.00021 33.2 -0.4 22 242-264 110-131 (161)
74 PF02671 PAH: Paired amphipath 37.1 69 0.0015 21.4 4.0 31 192-222 16-46 (47)
75 PF06757 Ins_allergen_rp: Inse 36.6 2.8E+02 0.006 23.9 8.8 68 10-98 6-75 (179)
76 PRK12570 N-acetylmuramic acid- 36.5 50 0.0011 31.2 4.3 35 12-46 235-269 (296)
77 COG0264 Tsf Translation elonga 35.2 60 0.0013 31.0 4.5 41 8-48 5-45 (296)
78 PF13443 HTH_26: Cro/C1-type H 35.2 25 0.00053 24.5 1.5 37 58-99 21-57 (63)
79 PF12763 EF-hand_4: Cytoskelet 34.8 78 0.0017 25.3 4.5 66 59-129 7-73 (104)
80 PF12174 RST: RCD1-SRO-TAF4 (R 34.6 39 0.00084 25.3 2.6 16 113-128 39-54 (70)
81 KOG2643|consensus 34.5 1.4E+02 0.003 30.3 7.0 96 75-205 298-399 (489)
82 COG2922 Smg Uncharacterized pr 34.1 42 0.00091 28.9 2.9 37 63-99 4-40 (157)
83 COG2103 Predicted sugar phosph 32.5 69 0.0015 30.4 4.4 38 10-47 235-272 (298)
84 TIGR02465 chlorocat_1_2 chloro 32.4 1.5E+02 0.0032 27.6 6.5 53 214-276 11-63 (246)
85 TIGR02438 catachol_actin catec 32.1 1.5E+02 0.0033 28.1 6.6 54 214-277 42-95 (281)
86 PF08855 DUF1825: Domain of un 31.5 57 0.0012 26.6 3.2 75 60-140 10-107 (108)
87 PRK00116 ruvA Holliday junctio 31.5 2.6E+02 0.0057 24.5 7.8 95 5-103 65-170 (192)
88 KOG0028|consensus 31.0 2.4E+02 0.0052 24.8 7.1 67 60-127 104-170 (172)
89 KOG2873|consensus 30.4 93 0.002 29.4 4.8 49 175-225 200-252 (284)
90 COG5250 RPB4 RNA polymerase II 29.8 1E+02 0.0022 25.8 4.4 43 104-150 80-122 (138)
91 cd04752 Commd4 COMM_Domain con 29.3 1.1E+02 0.0024 26.5 4.9 53 79-131 21-75 (174)
92 PF09712 PHA_synth_III_E: Poly 29.1 1.2E+02 0.0026 28.7 5.5 38 82-120 115-160 (293)
93 smart00027 EH Eps15 homology d 28.5 71 0.0015 24.4 3.2 38 93-130 3-41 (96)
94 cd03460 1,2-CTD Catechol 1,2 d 27.8 1.4E+02 0.003 28.3 5.6 49 214-272 28-81 (282)
95 KOG2351|consensus 27.5 79 0.0017 26.6 3.5 41 106-150 78-118 (134)
96 PHA01083 hypothetical protein 27.2 90 0.002 26.9 3.9 46 79-128 43-88 (149)
97 TIGR02439 catechol_proteo cate 27.0 1.4E+02 0.003 28.4 5.5 50 214-273 31-85 (285)
98 PF07261 DnaB_2: Replication i 25.9 15 0.00032 26.8 -1.0 59 78-139 14-74 (77)
99 PLN02223 phosphoinositide phos 25.5 1.2E+02 0.0025 31.4 5.0 66 60-127 14-92 (537)
100 PF07848 PaaX: PaaX-like prote 25.4 55 0.0012 24.4 2.0 39 62-101 4-42 (70)
101 PF04361 DUF494: Protein of un 24.9 77 0.0017 27.2 3.1 37 64-100 5-41 (155)
102 cd03462 1,2-CCD chlorocatechol 24.4 2.5E+02 0.0054 26.1 6.5 51 214-274 12-62 (247)
103 PLN02230 phosphoinositide phos 24.4 1.9E+02 0.0042 30.3 6.4 66 60-127 27-102 (598)
104 PF10036 RLL: Putative carniti 24.0 81 0.0017 29.1 3.3 28 82-109 57-85 (249)
105 cd01102 Link_Domain The link d 23.6 1.3E+02 0.0029 23.7 3.9 40 71-110 5-44 (92)
106 PF10075 PCI_Csn8: COP9 signal 23.5 35 0.00077 28.2 0.7 37 12-48 100-136 (143)
107 PRK10391 oriC-binding nucleoid 23.1 1.3E+02 0.0027 22.8 3.5 26 117-144 2-27 (71)
108 PF11547 E3_UbLigase_EDD: E3 u 23.0 2.5E+02 0.0055 19.8 4.7 38 9-46 10-48 (53)
109 PF10384 Scm3: Centromere prot 23.0 67 0.0015 23.2 2.0 22 61-82 15-39 (58)
110 KOG0044|consensus 22.9 2.6E+02 0.0055 25.0 6.1 70 57-127 95-175 (193)
111 PF02001 DUF134: Protein of un 22.8 52 0.0011 26.7 1.5 37 90-127 38-80 (106)
112 PRK01198 V-type ATP synthase s 22.6 6.3E+02 0.014 23.5 9.1 24 13-36 29-53 (352)
113 PRK03980 flap endonuclease-1; 22.2 2.8E+02 0.006 26.2 6.6 80 10-100 177-270 (292)
114 PF14327 CSTF2_hinge: Hinge do 21.6 1E+02 0.0022 23.6 2.9 32 9-41 32-63 (84)
115 cd03518 Link_domain_HAPLN_modu 21.0 1.7E+02 0.0037 23.3 4.1 40 71-110 5-44 (95)
116 PF14788 EF-hand_10: EF hand; 20.8 2.8E+02 0.0062 19.5 4.7 48 80-127 2-49 (51)
117 PLN02952 phosphoinositide phos 20.6 2.9E+02 0.0062 29.1 6.7 66 59-127 35-110 (599)
118 PLN02222 phosphoinositide phos 20.6 2E+02 0.0044 30.0 5.7 64 60-127 23-90 (581)
119 cd03515 Link_domain_TSG_6_like 20.6 2E+02 0.0043 22.8 4.4 40 71-110 5-44 (93)
120 cd03567 VHS_GGA VHS domain fam 20.3 5.2E+02 0.011 21.6 7.3 16 113-128 74-89 (139)
121 smart00054 EFh EF-hand, calciu 20.3 1.3E+02 0.0029 15.7 2.6 14 113-126 14-27 (29)
122 PF09036 Bcr-Abl_Oligo: Bcr-Ab 20.1 2.3E+02 0.005 21.7 4.4 23 160-183 39-61 (79)
No 1
>KOG3077|consensus
Probab=100.00 E-value=2e-71 Score=503.90 Aligned_cols=258 Identities=48% Similarity=0.894 Sum_probs=242.0
Q ss_pred CCCCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHH-HHhhcCCCccch-hccCCcccHHHHHHHHHHhcCCCCCC
Q psy9055 1 MHKLKSSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLA-SDNYFQNPSAYY-KEQKSSVDRKKLESLYSKYKDASEPD 78 (284)
Q Consensus 1 m~~l~~~~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A-~~~fy~~~~~~~-~~~~~~~~~~~l~~lFd~Y~d~~~~~ 78 (284)
|++|+..+...+++|+.+|++++.++..+|++++|++..| .+.||.++.... .+....++.+.++++|.+|+||.+++
T Consensus 1 mnklk~~~~d~~~~~~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~l~~~f~~y~d~~d~~ 80 (260)
T KOG3077|consen 1 MNKLKSSQKDKFEQFMSFTASRKKTSLSCLAACDWNLKYAFNDSYYTNPQSLREESVQARVSEKRLEELFNQYKDPDDDN 80 (260)
T ss_pred CCccchhHHHHHHhhcccccccchhhhhhhcccccccchhcccchhcchhHHHHhhhhccccHHHHHHHHHHhcCccccc
Confidence 7889999999999999999999999999999999999999 666666665332 22245678899999999999998888
Q ss_pred ccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCCCcHHHHHhhccchhHhhhhccccchHHH
Q psy9055 79 KILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEK 158 (284)
Q Consensus 79 ~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~l~~l~~~~~~~~~~~~~~~ 158 (284)
.|++||+.+||+||||+|+++++|||||+|+|++||+|||++|+.||.++||+|+++|+.+|+
T Consensus 81 ~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~----------------- 143 (260)
T KOG3077|consen 81 LIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRLD----------------- 143 (260)
T ss_pred ccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHhhChhhHHHHHhhhhhcccCCCCCCCCHHHHHHHHHHhhcCCcccHHHHHHHHHhhccCCCChhhhHHH
Q psy9055 159 LKMRLPSLEAELKDNLKFKDFYQFTFNYAKNPGQKGLDLDMAITYWNIVLQGRFKFLHLWCTFLQEHHKRSIPKDTWNLL 238 (284)
Q Consensus 159 ~~~~~~~l~~~l~d~~~Fk~~Y~f~F~~~k~~~qk~l~~etAi~~W~lll~~~~~~l~~W~~FL~~~~~k~IskD~W~~~ 238 (284)
.++..+.|+++|+.+|+|+|+|++++|||+|++++||.||.+||+.++|.|++|++||++..++.|+||||+|+
T Consensus 144 ------~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~~~~~pll~~w~~FL~~~~~~~~~KDtW~~~ 217 (260)
T KOG3077|consen 144 ------FLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLFGQTPPLLDQWIQFLKDSPNRAISKDTWNLL 217 (260)
T ss_pred ------HHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHhCCCCchHHHHHHHHHhCcCcccCcccHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCcCCCchHhHHHHHHHhhHhhhccCCCCC
Q psy9055 239 LDFATATNEDMSNYDEEGAWPVLIDDFVEWAQPQVKAANQPTS 281 (284)
Q Consensus 239 l~F~~~~~~dls~YDe~~AWP~liDeFVe~~r~~~~~~~~~~~ 281 (284)
|+|.+++++|+|||||+||||+||||||||+|.+...++++++
T Consensus 218 l~Fs~~i~~dlSnYDeegAWP~liDeFVe~~r~~~~~~~~~~~ 260 (260)
T KOG3077|consen 218 LDFSKTIDPDLSNYDEEGAWPVLIDEFVEYLRDKQSNSKSGSS 260 (260)
T ss_pred HHHHHhcCccccCccccccchHHHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999999999777766654
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=100.00 E-value=3.4e-44 Score=293.91 Aligned_cols=106 Identities=54% Similarity=1.082 Sum_probs=96.2
Q ss_pred hHHHHhh-ChhhHHHHHhhhhhcccCCCCCCCCHHHHHHHHHHhhcCC-cccHHHHHHHHHhhccCCCChhhhHHHHHHH
Q psy9055 165 SLEAELK-DNLKFKDFYQFTFNYAKNPGQKGLDLDMAITYWNIVLQGR-FKFLHLWCTFLQEHHKRSIPKDTWNLLLDFA 242 (284)
Q Consensus 165 ~l~~~l~-d~~~Fk~~Y~f~F~~~k~~~qk~l~~etAi~~W~lll~~~-~~~l~~W~~FL~~~~~k~IskD~W~~~l~F~ 242 (284)
+|++++. |+++|++||+|||+|+|++|||+|++|+||+||++||+++ ++++++|++||+++++|+||||+|+|+++|+
T Consensus 10 ~l~~~l~~d~~~F~~~Y~f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~ 89 (117)
T PF03556_consen 10 ELRKELRSDPEYFKKFYRFTFDFAREEGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKDTWNQFLDFF 89 (117)
T ss_dssp HHHHHCCHSHHHHHHHHHHHHHHHS-TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChhHHHHHHHHH
Confidence 8888885 9999999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred hhcccCCCCCCcCCCchHhHHHHHHHhh
Q psy9055 243 TATNEDMSNYDEEGAWPVLIDDFVEWAQ 270 (284)
Q Consensus 243 ~~~~~dls~YDe~~AWP~liDeFVe~~r 270 (284)
+++++++++|||+||||+||||||||+|
T Consensus 90 ~~~~~dls~Yde~~AWP~liDeFVe~~r 117 (117)
T PF03556_consen 90 KTVDEDLSNYDEEGAWPSLIDEFVEWLR 117 (117)
T ss_dssp HH-HCCHCC--TTSSS-HHHHHHHHHHH
T ss_pred HhcCccccCCCCCCCCcHHHHHHHHHhC
Confidence 9999999999999999999999999997
No 3
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.33 E-value=1.7e-12 Score=88.39 Aligned_cols=41 Identities=34% Similarity=0.665 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCCCc
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNPS 49 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~~ 49 (284)
+++|++||+|||+++++|++||+.++|||+.||+.||+++.
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999998864
No 4
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.47 E-value=0.00022 Score=52.55 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=40.6
Q ss_pred CCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcC
Q psy9055 3 KLKSSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQ 46 (284)
Q Consensus 3 ~l~~~~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~ 46 (284)
.++..|.++|.+|+..||.+.+=++.+|+.++||++.|+..|-.
T Consensus 7 ~~~~~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 7 TLSPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999965
No 5
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=97.42 E-value=0.00011 Score=51.78 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCCC
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 48 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~ 48 (284)
.++|.+|+..||.+.+-|..||+.++||++.|+..|-...
T Consensus 1 q~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~ 40 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEELK 40 (51)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHCC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999997553
No 6
>KOG1364|consensus
Probab=96.86 E-value=0.0012 Score=63.31 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=40.5
Q ss_pred CcchHHHHHHHHhhhC-CCHHHHHHHHHhCCCChHHHHHhhcCCCc
Q psy9055 5 KSSQKDKVKRFISFTQ-TGELTAINCLSQNDWKLDLASDNYFQNPS 49 (284)
Q Consensus 5 ~~~~~~~i~qF~~iT~-~s~~~A~~~L~~~~w~l~~A~~~fy~~~~ 49 (284)
..++.++|.+|+.||+ .+.+.|++||++.+|||+.|++.||.+..
T Consensus 3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~ 48 (356)
T KOG1364|consen 3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGG 48 (356)
T ss_pred cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 3467889999999999 78899999999999999999999997753
No 7
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.47 E-value=0.0069 Score=39.48 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHH
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASD 42 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~ 42 (284)
++.|++.+++ |.+++.|+..|..++||++.|++
T Consensus 3 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 3 EEKVQQLMEM-GFSREQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5789999999 99999999999999999999997
No 8
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.42 E-value=0.04 Score=35.47 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhh
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNY 44 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~f 44 (284)
++.|++++++ |.+++.|++.|+.++||++.|++-.
T Consensus 2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4678888887 9999999999999999999998754
No 9
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.13 E-value=0.058 Score=34.87 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhc
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYF 45 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy 45 (284)
++.|++++++ |.+++.|+..|+.++||++.|++-.+
T Consensus 2 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM-GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 3578888884 99999999999999999999998654
No 10
>KOG3077|consensus
Probab=94.89 E-value=0.029 Score=52.07 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=69.9
Q ss_pred hHHHHHhhhhhcccCCCCCCCCHHHHHHHHHHhhcCCcccHHHHHHHHHhhccCCCChhhhHHHHHHHhhcccCCCCCCc
Q psy9055 175 KFKDFYQFTFNYAKNPGQKGLDLDMAITYWNIVLQGRFKFLHLWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDE 254 (284)
Q Consensus 175 ~Fk~~Y~f~F~~~k~~~qk~l~~etAi~~W~lll~~~~~~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~dls~YDe 254 (284)
.+.-.|...+.|+.+-|....++.++|-.|.+- .++...+..|.-+-.-..-...|-|+|++.++|.+.+-.|++.|.+
T Consensus 79 ~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~~l~~~l~d~~~Fk~ 157 (260)
T KOG3077|consen 79 DNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AATMCEFSREEFLKGMTALGCDSIDKLQQRLDFLRSVLKDLEKFKS 157 (260)
T ss_pred ccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cchhhhhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHccHHHhhH
Confidence 388889999999999999999999999999999 7777777777554444446789999999999999998778777766
Q ss_pred CCCchH
Q psy9055 255 EGAWPV 260 (284)
Q Consensus 255 ~~AWP~ 260 (284)
-.+||.
T Consensus 158 iY~faf 163 (260)
T KOG3077|consen 158 IYRFAF 163 (260)
T ss_pred HHHhhh
Confidence 655543
No 11
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.05 E-value=0.28 Score=33.66 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=45.9
Q ss_pred CccCHHHHHHHHHHcCCC-CCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 78 DKILVEGIMKFLDDLSLS-PESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 78 ~~I~~dG~~~~~edLgv~-ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
+.|+.+.+.+.|..+|+. +..-.+=.|...+-...-|.|+.+||+..|+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 579999999999999999 88888888999999999999999999999876
No 12
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=92.90 E-value=0.7 Score=30.64 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHH
Q psy9055 64 LESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGM 125 (284)
Q Consensus 64 l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~ 125 (284)
+..+|..|. .+..+.|..+-+...+..+|..+....+-.+...+....-|.++-++|+..+
T Consensus 2 ~~~~f~~~d-~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFD-KDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhC-CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 566788774 4455789999999999999998887777677778887778999999998754
No 13
>KOG2086|consensus
Probab=92.87 E-value=0.043 Score=53.40 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=39.0
Q ss_pred cchHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCCC
Q psy9055 6 SSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 48 (284)
Q Consensus 6 ~~~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~ 48 (284)
+...+.+++|+++||.++..|+.||...+|+++.|...++...
T Consensus 2 ~~p~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 2 AIPLDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred CCchhHHHHHhccCCCCccccccccccCCCchhhhhhhhcccc
Confidence 3456789999999999999999999999999999999999663
No 14
>PTZ00184 calmodulin; Provisional
Probab=92.77 E-value=4.2 Score=32.52 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 61 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 61 ~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
.+.+...|..+ |++..+.|+.+-+..++..+|.++.+..+-.+.-.+....-|.++.++|+..|..
T Consensus 10 ~~~~~~~F~~~-D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 10 IAEFKEAFSLF-DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHH-cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 35677788776 5555578999999999999999988777766777777777899999999998876
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=92.75 E-value=0.5 Score=36.52 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCC-CCCccCHHHHHHHHHH-----cCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCC
Q psy9055 62 KKLESLYSKYKDAS-EPDKILVEGIMKFLDD-----LSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGC 130 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~-~~~~I~~dG~~~~~ed-----Lgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~ 130 (284)
..+...|..|-+.+ +.+.|+.+-+..++.. +|..+....+--+.-.+....-|.|+-++|+..+..+++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 45777888886533 2478999999999876 677877666655556677788899999999999988765
No 16
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=92.73 E-value=0.53 Score=33.06 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhC
Q psy9055 65 ESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELG 129 (284)
Q Consensus 65 ~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 129 (284)
.++|..+ |.+..+.|+.+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|..+.
T Consensus 2 ~~~F~~~-D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSL-DPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHh-CCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 3567776 44555789999999999999984443332 33455667789999999999998754
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=91.91 E-value=0.82 Score=35.41 Aligned_cols=67 Identities=9% Similarity=0.173 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCC-CCccCHHHHHHHHHH---cCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhC
Q psy9055 63 KLESLYSKYKDASE-PDKILVEGIMKFLDD---LSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELG 129 (284)
Q Consensus 63 ~l~~lFd~Y~d~~~-~~~I~~dG~~~~~ed---Lgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 129 (284)
.|.++|.+|...++ .+.|+.+.+.+++.. +|..+....+--+-..+....-|.|+-++|+.-+..+.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 57778999986333 579999999999974 78777666665566677777889999999998887763
No 18
>PTZ00183 centrin; Provisional
Probab=91.85 E-value=0.89 Score=37.20 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
....+..+|..| |.++.+.|+.+.+..+|..+|..+.+-.+-.+...+....-|.|+.++|++.+..
T Consensus 88 ~~~~l~~~F~~~-D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 88 PREEILKAFRLF-DDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHHHh-CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 346788999877 5455578999999999999998877766666666776666799999999988765
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=91.66 E-value=0.74 Score=32.60 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCc-hHHHHH---HHhhcccccccccHHHHHHHH
Q psy9055 63 KLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPES-KLVLII---AWRFKAAAQCEFSRDEFMNGM 125 (284)
Q Consensus 63 ~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped-~~~LvL---a~~l~a~~~g~~tr~eF~~g~ 125 (284)
+|.++|..| |.+..+.|+.+-+.+++..+|..... ..--.+ ...+-...-|.|+.+||++.+
T Consensus 1 ~l~~~F~~~-D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKF-DKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHH-STTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHH-cCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 477899998 44455899999999999999987532 221222 334445678999999999754
No 20
>PTZ00184 calmodulin; Provisional
Probab=90.21 E-value=1.5 Score=35.27 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHH
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 126 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~ 126 (284)
....+..+|..| |.+..+.|+.+-+.++|..+|+.+.+..+=.+...+....-|.|+.++|+..+.
T Consensus 82 ~~~~~~~~F~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 82 SEEEIKEAFKVF-DRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHHhh-CCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 345678888888 444457899999999999998877665554555555555668899999987653
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=90.09 E-value=1.1 Score=34.61 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhC
Q psy9055 61 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELG 129 (284)
Q Consensus 61 ~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 129 (284)
.+.+...|..+- .+..+.|+.+-+.+.+..+|++.+.+.-+. -.+....-|.|+.++|+..|..+.
T Consensus 9 ~~~l~~~F~~~D-~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 9 KAKYEQIFRSLD-KNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHhC-CCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHHH
Confidence 457788888874 344578999999999999998766554333 234566789999999999998853
No 22
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=89.33 E-value=1.2 Score=34.17 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCC-CCCccCHHHHHHHHH-HcCCCCC----chHHHHHHHhhcccccccccHHHHHHHHHHhC
Q psy9055 63 KLESLYSKYKDAS-EPDKILVEGIMKFLD-DLSLSPE----SKLVLIIAWRFKAAAQCEFSRDEFMNGMLELG 129 (284)
Q Consensus 63 ~l~~lFd~Y~d~~-~~~~I~~dG~~~~~e-dLgv~pe----d~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 129 (284)
.|...|.+|.... +.+.|+.+-+..++. .+|-.+. +..+=-+...+....-|.|+-++|+..+..+.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5677899999764 347899999999997 4553332 33333344455667789999999999988763
No 23
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=88.06 E-value=0.91 Score=37.42 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHH
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASD 42 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~ 42 (284)
.+.|.-.++-||+|.+.|+..|+.+||||-.|+-
T Consensus 79 ~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 79 EDDIELVMKQCNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 4567888999999999999999999999999985
No 24
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=87.91 E-value=0.93 Score=37.33 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHh
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDN 43 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~ 43 (284)
.+.|.-.++-||+|.+.|+..|+.+|+||-.|+-.
T Consensus 77 ~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 77 EEDIELVAEQTGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 56688899999999999999999999999999864
No 25
>PTZ00183 centrin; Provisional
Probab=86.88 E-value=15 Score=29.77 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 61 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 61 ~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
.+.+..+|..+ |++..+.|+.+-+..++.-+|..+....+-.+.-.+....-|.|+.++|+..+..
T Consensus 16 ~~~~~~~F~~~-D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 16 KKEIREAFDLF-DTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHh-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 35677788775 5555578999999999999998877655555555666777899999999998765
No 26
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=86.73 E-value=1.6 Score=28.97 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHHHHHhhh-CCCHHHHHHHHHhCCCChHHHHHhhcC
Q psy9055 9 KDKVKRFISFT-QTGELTAINCLSQNDWKLDLASDNYFQ 46 (284)
Q Consensus 9 ~~~i~qF~~iT-~~s~~~A~~~L~~~~w~l~~A~~~fy~ 46 (284)
.+.|++..++. +.++++-+..|+++++|++.|++...+
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46788888888 458899999999999999999998653
No 27
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=86.46 E-value=2.4 Score=28.21 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=32.0
Q ss_pred HHHHHHHHhhh-CCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 9 KDKVKRFISFT-QTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 9 ~~~i~qF~~iT-~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
.+.|.+..++- +.++...+..|+++++|++.|++.....
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35677777776 5588999999999999999999987653
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=83.77 E-value=5.9 Score=30.66 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCCCC-ccCHHHHHHHHHH-cC----CCCCchHHHHHHHhhcccccccccHHHHHHHHHHhC
Q psy9055 63 KLESLYSKYKDASEPD-KILVEGIMKFLDD-LS----LSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELG 129 (284)
Q Consensus 63 ~l~~lFd~Y~d~~~~~-~I~~dG~~~~~ed-Lg----v~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 129 (284)
.+...|.+|.+.++.+ .|+.+-+.+++.. +| -.+.+-.+=-+...+....-|.|+-+||+.-+..|.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4555699999765544 6999999999976 43 333333444456666777789999999999888764
No 29
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=82.78 E-value=8.6 Score=29.75 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCCC-CccCHHHHHHHHHHc-----CCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhC
Q psy9055 62 KKLESLYSKYKDASEP-DKILVEGIMKFLDDL-----SLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELG 129 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~-~~I~~dG~~~~~edL-----gv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 129 (284)
..|..+|.+|.+.++. +.|+.+.+.++++.- +-..++..+--+.-.+....-|.|+-+||+.-+..+.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4677889999876543 489999999999775 2222223333344466677789999999998887763
No 30
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=82.25 E-value=15 Score=31.93 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHHhc--CCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCC--CcHH
Q psy9055 59 VDRKKLESLYSKYK--DASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGC--DSIE 134 (284)
Q Consensus 59 ~~~~~l~~lFd~Y~--d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~--~si~ 134 (284)
.+.+.+.+|.+.|+ |++..+.|+-+-+..++..||.+|.+..+.-|.--+.+ .-|.++-.+|+..|...-+ ++-+
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHH
Confidence 46677777777776 56556889999999999999999999998888888888 6788999999999988543 4567
Q ss_pred HHHhhcc
Q psy9055 135 KLKMRLP 141 (284)
Q Consensus 135 ~lk~~l~ 141 (284)
+|+.+..
T Consensus 93 el~~aF~ 99 (160)
T COG5126 93 ELREAFK 99 (160)
T ss_pred HHHHHHH
Confidence 7777765
No 31
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=80.91 E-value=9.1 Score=28.73 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCC-CCCCccCHHHHHHHHHH-cCCCC----CchHHHHHHHhhcccccccccHHHHHHHHHHh
Q psy9055 62 KKLESLYSKYKDA-SEPDKILVEGIMKFLDD-LSLSP----ESKLVLIIAWRFKAAAQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 62 ~~l~~lFd~Y~d~-~~~~~I~~dG~~~~~ed-Lgv~p----ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 128 (284)
+.+...|..|-.. +..+.|+.+.+.+++.. +|..+ ....+=-+.-.+....-|.|+-++|+..+..+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4577778888542 34578999999999976 66443 23333334445566778999999999998875
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=80.54 E-value=12 Score=28.48 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCCCC-ccCHHHHHHHHHH-cCC----CCCchHHHHHHHhhcccccccccHHHHHHHHHHh
Q psy9055 62 KKLESLYSKYKDASEPD-KILVEGIMKFLDD-LSL----SPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~-~I~~dG~~~~~ed-Lgv----~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 128 (284)
..|.+.|..|-|.+..+ .|+.+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 56788899996444446 5999999999975 653 4444444445555677788999999999887765
No 33
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=78.41 E-value=14 Score=28.39 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCCCCC-ccCHHHHHHHHHH-----cCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHh
Q psy9055 62 KKLESLYSKYKDASEPD-KILVEGIMKFLDD-----LSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~-~I~~dG~~~~~ed-----Lgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 128 (284)
..|.+.|..|-+.+..+ .|+.+-+..++.. +|-.++...+=-+--.+....-|.|+-++|+.-+..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35777899996433345 6999999999999 9977654434334445577778999999999876654
No 34
>KOG0027|consensus
Probab=77.10 E-value=31 Score=28.67 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCch----HHHHHHH-hhcccccccccHHHHHHHHHHhCC
Q psy9055 59 VDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK----LVLIIAW-RFKAAAQCEFSRDEFMNGMLELGC 130 (284)
Q Consensus 59 ~~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~----~~LvLa~-~l~a~~~g~~tr~eF~~g~~~l~~ 130 (284)
+....+..++.++-. ++.+.|+.+-+..++...+...... .-|.=|+ .+-....|.||.+++.+-++.+|-
T Consensus 41 ~t~~el~~~~~~~D~-dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDL-DGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred CCHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 355667777777643 3345677777777777666655432 2444444 444556677777777777777663
No 35
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=77.02 E-value=4.6 Score=33.60 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=30.3
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHh
Q psy9055 10 DKVKRFISFTQTGELTAINCLSQNDWKLDLASDN 43 (284)
Q Consensus 10 ~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~ 43 (284)
+-|.=-++=||+|.+.|+..|+.++.||-.|+-.
T Consensus 86 eDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 86 EDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4577788899999999999999999999999864
No 36
>KOG0036|consensus
Probab=75.37 E-value=8.4 Score=38.39 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCCCcHHHH
Q psy9055 62 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGCDSIEKL 136 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~si~~l 136 (284)
.+|-.+|.+-.-. ....|++..|.++|.|+|+++.|-..--+-..+--..-+.|.-+||.+-+.-.-.++++.+
T Consensus 82 ~~l~~~F~~iD~~-hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di 155 (463)
T KOG0036|consen 82 LELYRIFQSIDLE-HDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDI 155 (463)
T ss_pred HHHHHHHhhhccc-cCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHH
Confidence 3455556555432 2368999999999999999999987777666666666788999999988777666666665
No 37
>KOG0027|consensus
Probab=75.28 E-value=20 Score=29.76 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCC
Q psy9055 61 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGC 130 (284)
Q Consensus 61 ~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~ 130 (284)
...+.+.|..+-- +..+.|..+=+...+..||.+|....+-.+-..+....-|.|+.++|+.-+...+.
T Consensus 7 ~~el~~~F~~fD~-d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 7 ILELKEAFQLFDK-DGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHCC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 3567778888843 23378999999999999999999998888888888888999999999999998765
No 38
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=75.12 E-value=4.8 Score=24.58 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHH-HcC
Q psy9055 63 KLESLYSKYKDASEPDKILVEGIMKFLD-DLS 93 (284)
Q Consensus 63 ~l~~lFd~Y~d~~~~~~I~~dG~~~~~e-dLg 93 (284)
++.++|+.| |.+..+.|+.+-+.+.+. .||
T Consensus 1 ~l~~~F~~~-D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMF-DKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH--TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHH-CCCCCCcCcHHHHHHHHHHhcC
Confidence 366778888 444457788888888887 676
No 39
>KOG4351|consensus
Probab=74.34 E-value=0.87 Score=41.72 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=38.6
Q ss_pred CcchHHHHHHHHhhhCC--CH-HHHHHHHHhCCCChHHHHHhhcCCCc
Q psy9055 5 KSSQKDKVKRFISFTQT--GE-LTAINCLSQNDWKLDLASDNYFQNPS 49 (284)
Q Consensus 5 ~~~~~~~i~qF~~iT~~--s~-~~A~~~L~~~~w~l~~A~~~fy~~~~ 49 (284)
+..+...|.||..+++. .+ ..|+.||+-.+|||..|+..||+...
T Consensus 20 t~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 20 TTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 34678899999999875 45 68999999999999999999998754
No 40
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=72.66 E-value=26 Score=27.21 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHH-cCCCCCc-hHHHHHHHhhcccccccccHHHHHHHHHHh
Q psy9055 62 KKLESLYSKYKDASEPDKILVEGIMKFLDD-LSLSPES-KLVLIIAWRFKAAAQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~~I~~dG~~~~~ed-Lgv~ped-~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 128 (284)
..|...|..|...++.+.|+.+.+..++.. ||-...+ ..+=-+...+....-|.|+-+||+.-+..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 356778999954245579999999999998 9844444 333334455667778999999999888776
No 41
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=72.12 E-value=7.7 Score=28.96 Aligned_cols=63 Identities=17% Similarity=0.353 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHH----cCCCCCchHHHHHHHhhc--ccccccccHHHHHHHHHH
Q psy9055 63 KLESLYSKYKDASEPDKILVEGIMKFLDD----LSLSPESKLVLIIAWRFK--AAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 63 ~l~~lFd~Y~d~~~~~~I~~dG~~~~~ed----Lgv~ped~~~LvLa~~l~--a~~~g~~tr~eF~~g~~~ 127 (284)
.|..+|.+|.+ +...|+++++.+|+.+ -.++++.+.-++--+.-. ....+.+|.++|+.-+..
T Consensus 1 ei~~if~~ys~--~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS--DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT--TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC--CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 37889999976 3478999999999953 334455555554443211 235688999999988765
No 42
>PF14658 EF-hand_9: EF-hand domain
Probab=71.53 E-value=15 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=46.4
Q ss_pred CCCCCCccCHHHHHHHHHHcCC-CCCchHHHHHHHhhccccc-ccccHHHHHHHHHH
Q psy9055 73 DASEPDKILVEGIMKFLDDLSL-SPESKLVLIIAWRFKAAAQ-CEFSRDEFMNGMLE 127 (284)
Q Consensus 73 d~~~~~~I~~dG~~~~~edLgv-~ped~~~LvLa~~l~a~~~-g~~tr~eF~~g~~~ 127 (284)
|++..++|-+.-+..|+..+|- +|++-.+=-|+-.+--..- |.+.++.|+.-|+.
T Consensus 8 D~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 8 DTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4444578999999999999999 9999988888888876555 99999999998875
No 43
>KOG2756|consensus
Probab=70.98 E-value=3.9 Score=38.76 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCCC
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 48 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~ 48 (284)
++++-+|-.+|.+.+..|..+|..++|++..|++.||...
T Consensus 26 ~~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 26 RLLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 4567889999999999999999999999999999999864
No 44
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=70.91 E-value=7.7 Score=28.32 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=39.6
Q ss_pred ccCHHHHHHHHHHcCCCCCchHHHHHHHhh--cccccccccHHHHHHHHHHhCCCcHHHHH
Q psy9055 79 KILVEGIMKFLDDLSLSPESKLVLIIAWRF--KAAAQCEFSRDEFMNGMLELGCDSIEKLK 137 (284)
Q Consensus 79 ~I~~dG~~~~~edLgv~ped~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l~~~si~~lk 137 (284)
....+-+..++++.|.+|+ ++...+-+-+ +.++++.+. .-++.|++-|+.|+++.+
T Consensus 15 ~~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi~--~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 15 PFEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYID--AILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHHH--HHHHHHHHcCCCCHHHHh
Confidence 4567888899999998755 5444444433 345555444 577789999999998865
No 45
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=70.02 E-value=22 Score=30.84 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=56.4
Q ss_pred CcccHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 57 SSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 57 ~~~~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
....+.+|...|.-|=.. ..+.|+.+=+.+.+..||-...+-.+=-|.-.+.-..-|+|+.++|++.+..
T Consensus 87 ~~~~~Eel~~aF~~fD~d-~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 87 RGDKEEELREAFKLFDKD-HDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cCCcHHHHHHHHHHhCCC-CCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 344578899999999543 3478999999999999999988777666666666667899999999998875
No 46
>KOG0028|consensus
Probab=69.95 E-value=39 Score=29.63 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHh--CCCcHHHHHhh
Q psy9055 62 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLEL--GCDSIEKLKMR 139 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l--~~~si~~lk~~ 139 (284)
..++.-|+-+- ++..+.|+.+++--=.-.||.+|..-.++-|.--+.....|.|+=++|+.-|... .-+|.+.++.+
T Consensus 33 q~i~e~f~lfd-~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFD-PDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhc-cCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 45666666663 5666899999996666789999999998887777777778999999999987662 23688888888
Q ss_pred cc
Q psy9055 140 LP 141 (284)
Q Consensus 140 l~ 141 (284)
+.
T Consensus 112 fr 113 (172)
T KOG0028|consen 112 FR 113 (172)
T ss_pred HH
Confidence 76
No 47
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=66.39 E-value=17 Score=28.57 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=38.5
Q ss_pred chHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCCCccchhccCCcccHHHHHHHHHHhcCCCCCCccCHHHHH
Q psy9055 7 SQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKYKDASEPDKILVEGIM 86 (284)
Q Consensus 7 ~~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~~~~~~~~~~~~~~~~l~~lFd~Y~d~~~~~~I~~dG~~ 86 (284)
.+.+++-.|+..||+++..=+.-...- ..-.+|=.|. -. +-.=++
T Consensus 19 ~d~e~l~rFLa~TG~~p~~LR~~a~dp--~FL~~VLdFl--------------------------~~-------de~~l~ 63 (88)
T PF12096_consen 19 GDPERLPRFLALTGLSPDDLRAAAGDP--AFLAAVLDFL--------------------------LM-------DEAWLL 63 (88)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHccCh--HHHHHHHHHH--------------------------Hc-------chHHHH
Confidence 456788999999999987766543332 2333333333 21 134578
Q ss_pred HHHHHcCCCCCchH
Q psy9055 87 KFLDDLSLSPESKL 100 (284)
Q Consensus 87 ~~~edLgv~ped~~ 100 (284)
.||+.+|++|+.+.
T Consensus 64 af~~a~~~~p~~v~ 77 (88)
T PF12096_consen 64 AFCDAAGIPPEAVA 77 (88)
T ss_pred HHHHHcCcChhHHH
Confidence 99999999998654
No 48
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=65.05 E-value=37 Score=27.72 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHH
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 126 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~ 126 (284)
...+|.-.|.++ |.+..+.|+.+=+..++ +.+....+--+-..+-+..-|.||.+||..++.
T Consensus 46 ~~~~l~w~F~~l-D~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQL-DGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHH-CCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 445788889999 55555789999998877 344333333445556677889999999999983
No 49
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=63.90 E-value=13 Score=33.26 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
.+.|.+..+.||++--.+..-|..++||++.|++--=.+
T Consensus 5 a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~ 43 (198)
T PRK12332 5 AKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREK 43 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 467999999999999999999999999999999866444
No 50
>CHL00098 tsf elongation factor Ts
Probab=63.19 E-value=12 Score=33.58 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 10 DKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 10 ~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
++|.+..+.||+.--.+..-|..++||++.|++--=.+
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~ 40 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQK 40 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 57999999999999999999999999999999866444
No 51
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=63.02 E-value=5.5 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=12.1
Q ss_pred cccccccHHHHHHHHHHh
Q psy9055 111 AAQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 111 ~~~g~~tr~eF~~g~~~l 128 (284)
..-|.|+.+||+.++++|
T Consensus 12 d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 12 DGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TSSSEEEHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHhC
Confidence 345777777777777654
No 52
>KOG0034|consensus
Probab=62.71 E-value=1.1e+02 Score=27.08 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHHhc--CCC-CCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCCCcHHH
Q psy9055 59 VDRKKLESLYSKYK--DAS-EPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGCDSIEK 135 (284)
Q Consensus 59 ~~~~~l~~lFd~Y~--d~~-~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~si~~ 135 (284)
.+...|+.|+.+|+ +.. +.+.|..+-+..+. .+..+|=...++-+....++..+ ++-++|++++.-....+...
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCccHH
Confidence 35678888888887 333 45789999999888 88999988888888887777555 99999999998876544433
Q ss_pred HHhhccchhHhhhhccccchHHHHhhhhhhHHHHhhChhhHHHHHhhhhhcccCCCCCCCCHHHHHHHHHHhhcCC----
Q psy9055 136 LKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKFKDFYQFTFNYAKNPGQKGLDLDMAITYWNIVLQGR---- 211 (284)
Q Consensus 136 lk~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~Fk~~Y~f~F~~~k~~~qk~l~~etAi~~W~lll~~~---- 211 (284)
-|-. |+|..=--.+.-.|.-+.-...-..+++..
T Consensus 104 ~Kl~------------------------------------------faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~ 141 (187)
T KOG0034|consen 104 EKLR------------------------------------------FAFRVYDLDGDGFISREELKQILRMMVGENDDMS 141 (187)
T ss_pred HHHH------------------------------------------HHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcch
Confidence 2221 222221112223366666666666666632
Q ss_pred cccHHHHHHHHHhh----ccCCCChhhhHHHH
Q psy9055 212 FKFLHLWCTFLQEH----HKRSIPKDTWNLLL 239 (284)
Q Consensus 212 ~~~l~~W~~FL~~~----~~k~IskD~W~~~l 239 (284)
-..+..-++++-.. ....||.+.|+-++
T Consensus 142 ~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 142 DEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 14566666665433 23568888777654
No 53
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=61.57 E-value=14 Score=35.01 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 8 QKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 8 ~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
..+.|.+..+.||+.--.+..-|..++||++.|++--=..
T Consensus 4 sa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkk 43 (290)
T TIGR00116 4 TAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRES 43 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3467999999999999999999999999999999866444
No 54
>PRK09377 tsf elongation factor Ts; Provisional
Probab=59.80 E-value=16 Score=34.69 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 8 QKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 8 ~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
..+.|.+..+.||+.--.+.+-|..+++|++.|++--=..
T Consensus 5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~ 44 (290)
T PRK09377 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKK 44 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4578999999999999999999999999999999976544
No 55
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=58.82 E-value=15 Score=25.45 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHhh
Q psy9055 20 QTGELTAINCLSQNDWKLDLASDNY 44 (284)
Q Consensus 20 ~~s~~~A~~~L~~~~w~l~~A~~~f 44 (284)
.+++..-.+||.+.+||++.|...+
T Consensus 28 ~~~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 28 DHDDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp S-SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 4577899999999999999998754
No 56
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=58.28 E-value=36 Score=28.95 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=62.1
Q ss_pred HHHHHHHhcCC--CCCCccCHHHHHHHHHHcCCCCCch---HHHHHHHhhcccccccccHHHHHHHHHHh----CCC--c
Q psy9055 64 LESLYSKYKDA--SEPDKILVEGIMKFLDDLSLSPESK---LVLIIAWRFKAAAQCEFSRDEFMNGMLEL----GCD--S 132 (284)
Q Consensus 64 l~~lFd~Y~d~--~~~~~I~~dG~~~~~edLgv~ped~---~~LvLa~~l~a~~~g~~tr~eF~~g~~~l----~~~--s 132 (284)
|+++|..|+.- .+...|+...+.++|.|.||=...+ .+=++-.+++++.-..|+=++|++.+..+ +++ +
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 67899999632 2346799999999999999954322 22233446777776679999999998875 232 5
Q ss_pred HHHHHhhccchhHhhhhccccchHHHHhhhhhhHHHHhhChhhHHHHHhhhhh
Q psy9055 133 IEKLKMRLPSLEAELKDNLNCDSIEKLKMRLPSLEAELKDNLKFKDFYQFTFN 185 (284)
Q Consensus 133 i~~lk~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~Fk~~Y~f~F~ 185 (284)
.+++..+|-.-..+..... .-+.....+.|+..|.-+|.-.|+
T Consensus 81 ~~~~~~kl~~~~~P~~~g~----------~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 81 AEELKEKLTAGGGPSASGA----------TKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHTT--SSSSS-----------TTS------SSSS-STTS---SS-
T ss_pred HHHHHHHHHccCccccccc----------cccccccccCCCCccchhhhhcCC
Confidence 6666666521111111110 001333456788999999888887
No 57
>KOG0036|consensus
Probab=57.02 E-value=2.1e+02 Score=28.88 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCC-CCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 61 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLS-PESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 61 ~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~-ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
+.++..+|+.+-.. +...++.+.+.+-++.|++. |..-..=.|...+.+..-|...-++|.+.+..
T Consensus 13 ~~r~~~lf~~lD~~-~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 13 DIRIRCLFKELDSK-NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHHHhccC-CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 46788899998653 34789999999999999999 76666777888999999999999999998877
No 58
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=56.18 E-value=47 Score=27.16 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCCCchHHHH-HHHhhcccccccccHHHHHHHHHHhCCCcHHHHHhhcc
Q psy9055 82 VEGIMKFLDDLSLSPESKLVLI-IAWRFKAAAQCEFSRDEFMNGMLELGCDSIEKLKMRLP 141 (284)
Q Consensus 82 ~dG~~~~~edLgv~ped~~~Lv-La~~l~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~l~ 141 (284)
..|=.++...+|+++..+.-++ +|.++..+.+| ..|..=+..-|++|+++|...=|
T Consensus 29 ~~~r~~La~~~~i~~~~l~~w~~~AdL~ri~gi~----~~~a~LL~~AGv~Tv~~LA~~~p 85 (122)
T PF14229_consen 29 PLGRKALAKKLGISERNLLKWVNQADLMRIPGIG----PQYAELLEHAGVDTVEELAQRNP 85 (122)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHhhhcCCCC----HHHHHHHHHhCcCcHHHHHhCCH
Confidence 4455569999999999876554 88898888888 67888899999999999988876
No 59
>KOG4380|consensus
Probab=52.57 E-value=58 Score=29.35 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=45.3
Q ss_pred hhCCCHHHHHHHHHhCCCChHHHHHhhcCCCccchhccCCcccHHHHHHHHHHhcCCCCC----Ccc---CHHHHHHHHH
Q psy9055 18 FTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKYKDASEP----DKI---LVEGIMKFLD 90 (284)
Q Consensus 18 iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~~~~~~~~~~~~~~~~l~~lFd~Y~d~~~~----~~I---~~dG~~~~~e 90 (284)
+.|++...|+.|| |+.|+..-|.+..+.+.-. ++.-++.-+.-.+..+| |+= =.+|.+.+|.
T Consensus 71 ~~~~~R~~AID~~------L~~AV~~~Y~~~~~~~~~~-----~~~~~K~~~~~~~~~~PL~~LD~~~P~F~~~~~AL~~ 139 (244)
T KOG4380|consen 71 FKIQDRQEAIDWL------LGLAVRLEYGDNAEKYKDL-----VPDNSKTADNATKNAEPLINLDVNNPDFKAGVMALAN 139 (244)
T ss_pred cccccHHHHHHHH------HHHHHHHHHHhcccchhhh-----hhhhHHHHHhhhcccCchhhcCCCCccHHHHHHHHHH
Confidence 3677888888765 8899999998765433111 12223333333333332 111 1579999999
Q ss_pred HcCCCC-CchHHHH
Q psy9055 91 DLSLSP-ESKLVLI 103 (284)
Q Consensus 91 dLgv~p-ed~~~Lv 103 (284)
-|||+. .|+.++.
T Consensus 140 iL~I~~H~D~~Vmm 153 (244)
T KOG4380|consen 140 LLQIQRHDDYLVML 153 (244)
T ss_pred HhccccCCCHHHHH
Confidence 999994 4555543
No 60
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=49.56 E-value=53 Score=24.03 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHhhhCC-CHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 5 KSSQKDKVKRFISFTQT-GELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 5 ~~~~~~~i~qF~~iT~~-s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
+++-+..|+...++||+ |++.--.-|..+|-|-+.|++.....
T Consensus 2 P~~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 2 PAASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 34567889999999999 99999999999999999999988764
No 61
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=48.04 E-value=29 Score=21.89 Aligned_cols=28 Identities=18% Similarity=0.513 Sum_probs=22.0
Q ss_pred HHHHHHHHhhccCCCChhhhHHHHHHHh
Q psy9055 216 HLWCTFLQEHHKRSIPKDTWNLLLDFAT 243 (284)
Q Consensus 216 ~~W~~FL~~~~~k~IskD~W~~~l~F~~ 243 (284)
..|++.+.+-..-+||++.-+.||.|.+
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~~k 30 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEFNK 30 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4799999888778899999999998853
No 62
>PLN02964 phosphatidylserine decarboxylase
Probab=47.91 E-value=88 Score=33.03 Aligned_cols=64 Identities=6% Similarity=-0.036 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHh
Q psy9055 64 LESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 64 l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 128 (284)
+..+|..+ |.+..+.|+.+-+..++..+|-.+.+-.+.-+-..+....-|.||.+||.+.+...
T Consensus 181 i~~mf~~~-D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIV-DYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHh-CCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 45555554 33333455555555555555532222222222223333344556665555555553
No 63
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=47.26 E-value=38 Score=25.60 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=38.5
Q ss_pred cHHHHHHHHHhhccCCCChhhhHHHHHHHhhcccCCCCCCcCCCchHhHHHH-HHH---hhHhh
Q psy9055 214 FLHLWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDEEGAWPVLIDDF-VEW---AQPQV 273 (284)
Q Consensus 214 ~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~dls~YDe~~AWP~liDeF-Ve~---~r~~~ 273 (284)
.+..-.+|+++. .||-|.|..-.+|+..+.. .+-||.|.|=| ++. +-+..
T Consensus 11 lv~~lh~~i~e~---~lT~~E~~~av~~L~~~G~-------~~E~~Ll~DvlGle~ld~~vd~~ 64 (74)
T PF04444_consen 11 LVRHLHDFIREV---DLTEDEWWAAVDFLNRVGQ-------RNEFILLSDVLGLEHLDLLVDAI 64 (74)
T ss_dssp HHHHHHHHHHHC---T--HHHHHHHHHHHHHHHH-------TTHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcC-------CCchhhhhhhhccchHHHHHhhh
Confidence 455667788765 3999999999999999877 78899999999 888 55443
No 64
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=44.60 E-value=25 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHHhhhCCCHHHHHHHHHh
Q psy9055 11 KVKRFISFTQTGELTAINCLSQ 32 (284)
Q Consensus 11 ~i~qF~~iT~~s~~~A~~~L~~ 32 (284)
.+.+|.+++|+|.+.|+.+|+-
T Consensus 12 tv~~~rd~lg~sRK~ai~lLE~ 33 (50)
T PF09107_consen 12 TVAEFRDLLGLSRKYAIPLLEY 33 (50)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHH
T ss_pred cHHHHHHHHCccHHHHHHHHHH
Confidence 3789999999999999999974
No 65
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=43.27 E-value=35 Score=32.20 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=31.3
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 12 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 12 i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
++=.+.+||++.++|.+.|+++++++-.|+-.--..
T Consensus 239 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 239 VRIVMEATGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 445889999999999999999999999999876543
No 66
>KOG1071|consensus
Probab=43.23 E-value=34 Score=33.07 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=33.9
Q ss_pred chHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHH
Q psy9055 7 SQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASD 42 (284)
Q Consensus 7 ~~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~ 42 (284)
.+++.|.+..+=||++-.-+.+.|+.++|||..|..
T Consensus 45 ~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 45 SSKALLKKLREKTGASMVNCKKALEECGGDLVLAEE 80 (340)
T ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHH
Confidence 588999999999999999999999999999999875
No 67
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=41.77 E-value=38 Score=31.96 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 12 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 12 i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
++=.+++||++.++|.+.|.++++++-.||-.--..
T Consensus 234 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 234 VRIVRQATDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 445789999999999999999999999999865443
No 68
>KOG0985|consensus
Probab=41.04 E-value=83 Score=35.35 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCCCcHHHHHhh
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGCDSIEKLKMR 139 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~ 139 (284)
..++|.++|++|++ .+|+-=|+..+=-=-+|+.+ +.-|.--|-.||.|+. --+-+++-+|.+.+..|+.
T Consensus 693 g~~~li~lFE~fks--------~eGL~yfLgSivn~seDpev-h~KYIqAA~kt~QikE--vERicresn~YdpErvKNf 761 (1666)
T KOG0985|consen 693 GAQALIELFESFKS--------YEGLYYFLGSIVNFSEDPEV-HFKYIQAACKTGQIKE--VERICRESNCYDPERVKNF 761 (1666)
T ss_pred CHHHHHHHHHhhcc--------chhHHHHHHHHhccccCchH-HHHHHHHHHhhccHHH--HHHHHhccccCCHHHHHHH
Confidence 45789999999986 67888888765222344443 3344445677888865 4467888999999999998
Q ss_pred ccchhHhhhhc----cccchHHHHhhhhhhHHHHh--hChhhHHHHHhhhhhcccCC
Q psy9055 140 LPSLEAELKDN----LNCDSIEKLKMRLPSLEAEL--KDNLKFKDFYQFTFNYAKNP 190 (284)
Q Consensus 140 l~~l~~~~~~~----~~~~~~~~~~~~~~~l~~~l--~d~~~Fk~~Y~f~F~~~k~~ 190 (284)
|. ++.|.|- +-|+-+.+|+ +|.-.| ++...|=++|----+=+|-|
T Consensus 762 Lk--eAkL~DqlPLiiVCDRf~fVh----dlvlYLyrnn~~kyIE~yVQkvNps~~p 812 (1666)
T KOG0985|consen 762 LK--EAKLTDQLPLIIVCDRFDFVH----DLVLYLYRNNLQKYIEIYVQKVNPSRTP 812 (1666)
T ss_pred HH--hccccccCceEEEecccccHH----HHHHHHHHhhHHHHHHHHHhhcCCcccc
Confidence 86 4444333 3477777777 666666 35667777776555444443
No 69
>PLN02964 phosphatidylserine decarboxylase
Probab=40.32 E-value=1.2e+02 Score=32.08 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHHcC-CCCCchHH---HHHHHhhcccccccccHHHHHHHHHHhCC-CcHHHH
Q psy9055 62 KKLESLYSKYKDASEPDKILVEGIMKFLDDLS-LSPESKLV---LIIAWRFKAAAQCEFSRDEFMNGMLELGC-DSIEKL 136 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLg-v~ped~~~---LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-~si~~l 136 (284)
+.+.+.|+.+ |++.++.| +-..+..|| ++|+.... --+...+....-|.|+.+||+..+..++. .+-+++
T Consensus 143 ~elkeaF~lf-D~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 143 ESACESFDLL-DPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHH-CCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 4455556655 44444555 777888999 58887752 23333456666799999999999998875 455556
Q ss_pred Hhhcc
Q psy9055 137 KMRLP 141 (284)
Q Consensus 137 k~~l~ 141 (284)
+....
T Consensus 218 ~eaFk 222 (644)
T PLN02964 218 EELFK 222 (644)
T ss_pred HHHHH
Confidence 66544
No 70
>KOG0030|consensus
Probab=40.15 E-value=98 Score=26.65 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhccc--ccccccHHHHHHHHHHh
Q psy9055 62 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAA--AQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~--~~g~~tr~eF~~g~~~l 128 (284)
..+.++|+-|-.. ..++|+....---+-.||.+|.+..++-..-...+. ++-.++=++|+--++.+
T Consensus 11 ~e~ke~F~lfD~~-gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 11 EEFKEAFLLFDRT-GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred HHHHHHHHHHhcc-CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 5677777777543 347899999999999999999998887766655555 45667778888766664
No 71
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=39.77 E-value=66 Score=25.71 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCCC---chHHHHHHHhhcccccccccHHHHHHHHHHhCCCcHHHHHhhccchhHhhhhccccchHHHHh
Q psy9055 84 GIMKFLDDLSLSPE---SKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCDSIEKLK 160 (284)
Q Consensus 84 G~~~~~edLgv~pe---d~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~l~~l~~~~~~~~~~~~~~~~~ 160 (284)
-+++|..+ .++|| .+..||.+-. .|.|+-|||...++..==.+ .+. .-+.+++
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~-----~~~i~~EeF~~~Lq~~lns~---pqP---------------~lvPFLK 67 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLV-----DGKIEAEEFTSKLQEELNSS---PQP---------------YLVPFLK 67 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHH-----TTSS-HHHHHHHHHHHCTSS-----T---------------THHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHhcCC---CCc---------------chHHHHH
Confidence 45677777 56665 2444554433 35699999999888731111 111 1134555
Q ss_pred hhhhhHHHHhhChhhH
Q psy9055 161 MRLPSLEAELKDNLKF 176 (284)
Q Consensus 161 ~~~~~l~~~l~d~~~F 176 (284)
..+|.|++.+.+.+.|
T Consensus 68 ~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 68 KSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHHHCHCHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 6666777777665544
No 72
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=38.86 E-value=61 Score=25.94 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhc--------------cCCCChhhhHHHHHHHhhcccCCCCCCcCCCchHhHHHHHH
Q psy9055 215 LHLWCTFLQEHH--------------KRSIPKDTWNLLLDFATATNEDMSNYDEEGAWPVLIDDFVE 267 (284)
Q Consensus 215 l~~W~~FL~~~~--------------~k~IskD~W~~~l~F~~~~~~dls~YDe~~AWP~liDeFVe 267 (284)
+=.|++||-++. -..||.+-=.++++|++-+..+-...+....|...+||=+.
T Consensus 21 ~~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~~~~~~~~~~~~~~Lt~~DH~~ 87 (99)
T PF04659_consen 21 VFEWLEFLVERVGHNNAADALDYYESIGWISEEVREQLLKYLKGFKYDHDDFEWKPSWKLTIDDHIK 87 (99)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCCccccccCCCCCCCHHHHHH
Confidence 447999997762 23699999999999999887665544457889888887543
No 73
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=37.45 E-value=9.5 Score=33.22 Aligned_cols=22 Identities=41% Similarity=0.847 Sum_probs=14.9
Q ss_pred HhhcccCCCCCCcCCCchHhHHH
Q psy9055 242 ATATNEDMSNYDEEGAWPVLIDD 264 (284)
Q Consensus 242 ~~~~~~dls~YDe~~AWP~liDe 264 (284)
+++++.++.-=-.+|||| |||.
T Consensus 110 LRTF~~~fqTC~v~GAWP-LIdN 131 (161)
T PF06535_consen 110 LRTFNDEFQTCKVEGAWP-LIDN 131 (161)
T ss_pred HhhccCCceeeeeeccee-eecC
Confidence 355566666666899999 4553
No 74
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=37.05 E-value=69 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCcccHHHHHHHH
Q psy9055 192 QKGLDLDMAITYWNIVLQGRFKFLHLWCTFL 222 (284)
Q Consensus 192 qk~l~~etAi~~W~lll~~~~~~l~~W~~FL 222 (284)
++.++..+.++-...||.++.+++..|..||
T Consensus 16 ~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~Fl 46 (47)
T PF02671_consen 16 KGRISRSEVIEEVSELLRGHPDLLEEFNRFL 46 (47)
T ss_dssp CTCSCHHHHHHHHHHHTTT-HHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHccCHHHHHHHHhhC
Confidence 4778888999999999999989999998886
No 75
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=36.61 E-value=2.8e+02 Score=23.91 Aligned_cols=68 Identities=12% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHhhhCCCH--HHHHHHHHhCCCChHHHHHhhcCCCccchhccCCcccHHHHHHHHHHhcCCCCCCccCHHHHHH
Q psy9055 10 DKVKRFISFTQTGE--LTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKYKDASEPDKILVEGIMK 87 (284)
Q Consensus 10 ~~i~qF~~iT~~s~--~~A~~~L~~~~w~l~~A~~~fy~~~~~~~~~~~~~~~~~~l~~lFd~Y~d~~~~~~I~~dG~~~ 87 (284)
+-+++|+.+-...+ ..+..|+..-. ....|++-+ .+ ....++..+..+- | ..-.+..
T Consensus 6 ~d~~dfl~lIp~~~i~~i~~~Y~~~D~-efq~~~~yl-~s--------------~~f~~l~~~l~~~--p---E~~~l~~ 64 (179)
T PF06757_consen 6 EDFQDFLDLIPMEEIQDIVQRYYLEDA-EFQAAVRYL-NS--------------SEFKQLWQQLEAL--P---EVKALLD 64 (179)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCH-HHHHHHHHH-cC--------------hHHHHHHHHHHcC--H---HHHHHHH
Confidence 44666776666555 33444433221 444444422 11 2344455555431 1 2456777
Q ss_pred HHHHcCCCCCc
Q psy9055 88 FLDDLSLSPES 98 (284)
Q Consensus 88 ~~edLgv~ped 98 (284)
|++..||+..+
T Consensus 65 yL~~~gldv~~ 75 (179)
T PF06757_consen 65 YLESAGLDVYY 75 (179)
T ss_pred HHHHCCCCHHH
Confidence 88888887766
No 76
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=36.54 E-value=50 Score=31.17 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcC
Q psy9055 12 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQ 46 (284)
Q Consensus 12 i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~ 46 (284)
++=.+.+||++.++|...|.++++++-.||-..-.
T Consensus 235 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 235 VRIVMQATGCSEDEAKELLKESDNDVKLAILMILT 269 (296)
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCccHHHHHHHHh
Confidence 45578899999999999999999999999986644
No 77
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=35.23 E-value=60 Score=30.97 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCCC
Q psy9055 8 QKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 48 (284)
Q Consensus 8 ~~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~ 48 (284)
.-+.|.+..+.||+.--.+.+-|..++.|++.|++-.=..+
T Consensus 5 ta~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG 45 (296)
T COG0264 5 TAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKG 45 (296)
T ss_pred cHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 34679999999999999999999999999999999664443
No 78
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=35.15 E-value=25 Score=24.55 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCch
Q psy9055 58 SVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 99 (284)
Q Consensus 58 ~~~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~ 99 (284)
+.++..+..++..- ...+..+-+.++|+-||++|+++
T Consensus 21 gis~~tl~~~~~~~-----~~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 21 GISRSTLSRILNGK-----PSNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp T--HHHHHHHHTTT----------HHHHHHHHHHHT--HHHC
T ss_pred CcCHHHHHHHHhcc-----cccccHHHHHHHHHHcCCCHHHH
Confidence 34556666666522 24689999999999999999875
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=34.76 E-value=78 Score=25.30 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHH-HHHhhcccccccccHHHHHHHHHHhC
Q psy9055 59 VDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLI-IAWRFKAAAQCEFSRDEFMNGMLELG 129 (284)
Q Consensus 59 ~~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~Lv-La~~l~a~~~g~~tr~eF~~g~~~l~ 129 (284)
.......++|+... +. .+.|+.+....++..-|++.+.+.-+. || -...-|..+++||+-+|+=+.
T Consensus 7 ~e~~~y~~~F~~l~-~~-~g~isg~~a~~~f~~S~L~~~~L~~IW~La---D~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 7 EEKQKYDQIFQSLD-PQ-DGKISGDQAREFFMKSGLPRDVLAQIWNLA---DIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp CHHHHHHHHHHCTS-SS-TTEEEHHHHHHHHHHTTSSHHHHHHHHHHH----SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CC-CCeEeHHHHHHHHHHcCCCHHHHHHHHhhh---cCCCCCcCCHHHHHHHHHHHH
Confidence 35677888998874 43 378999999999999999886543322 33 345679999999999998754
No 80
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=34.64 E-value=39 Score=25.31 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=14.0
Q ss_pred cccccHHHHHHHHHHh
Q psy9055 113 QCEFSRDEFMNGMLEL 128 (284)
Q Consensus 113 ~g~~tr~eF~~g~~~l 128 (284)
-++|||++|++-++.+
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 4789999999998884
No 81
>KOG2643|consensus
Probab=34.47 E-value=1.4e+02 Score=30.31 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=58.2
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHhCCCcHHHHHhhccchhHhhhhccccc
Q psy9055 75 SEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLELGCDSIEKLKMRLPSLEAELKDNLNCD 154 (284)
Q Consensus 75 ~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~l~~l~~~~~~~~~~~ 154 (284)
+....+.+|-..+|.++|-.++-..+..-.+ ...-|.||...|-.-+-.+..-+.++....+.
T Consensus 298 rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~----~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lk------------- 360 (489)
T KOG2643|consen 298 RGNGKLSIDEFLKFQENLQEEILELEFERFD----KGDSGAISEVDFAELLLAYAGVNSKKKHKYLK------------- 360 (489)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHhC----cccccccCHHHHHHHHHHHcccchHhHHHHHH-------------
Confidence 3446788888888888886543333332222 22238899988888877765444444333333
Q ss_pred hHHHHhhhhhhHHHHhhC------hhhHHHHHhhhhhcccCCCCCCCCHHHHHHHHH
Q psy9055 155 SIEKLKMRLPSLEAELKD------NLKFKDFYQFTFNYAKNPGQKGLDLDMAITYWN 205 (284)
Q Consensus 155 ~~~~~~~~~~~l~~~l~d------~~~Fk~~Y~f~F~~~k~~~qk~l~~etAi~~W~ 205 (284)
++..+..+ -+.|+.|.+|..+.+ ++++|+.+..
T Consensus 361 ----------rvk~kf~~~~~gISl~Ef~~Ff~Fl~~l~--------dfd~Al~fy~ 399 (489)
T KOG2643|consen 361 ----------RVKEKFKDDGKGISLQEFKAFFRFLNNLN--------DFDIALRFYH 399 (489)
T ss_pred ----------HHHHhccCCCCCcCHHHHHHHHHHHhhhh--------HHHHHHHHHH
Confidence 33333322 368888888887765 6677776644
No 82
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.09 E-value=42 Score=28.86 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCch
Q psy9055 63 KLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 99 (284)
Q Consensus 63 ~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~ 99 (284)
-|--||+.|.+.+-.-.++.|.+..-++|.|.+++|+
T Consensus 4 vl~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~dI 40 (157)
T COG2922 4 VLMYLFETYIHNEAELPVDQDSLENDLEDAGFDREDI 40 (157)
T ss_pred HHHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHHHH
Confidence 3567999999754434589999999999999999986
No 83
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=32.47 E-value=69 Score=30.40 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=32.6
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCC
Q psy9055 10 DKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 47 (284)
Q Consensus 10 ~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~ 47 (284)
..++=.+++||++.++|.++|+.++-++-.|+=.....
T Consensus 235 Ra~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~~~~ 272 (298)
T COG2103 235 RAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVMLLTG 272 (298)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHHHhC
Confidence 34667889999999999999999999999998876544
No 84
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=32.44 E-value=1.5e+02 Score=27.55 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=42.4
Q ss_pred cHHHHHHHHHhhccCCCChhhhHHHHHHHhhcccCCCCCCcCCCchHhHHHHHHHhhHhhhcc
Q psy9055 214 FLHLWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDEEGAWPVLIDDFVEWAQPQVKAA 276 (284)
Q Consensus 214 ~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~dls~YDe~~AWP~liDeFVe~~r~~~~~~ 276 (284)
++..-.+|+++.. +|-|.|..-++|+..+.. .+-|+.|.|=||+-+-..+..+
T Consensus 11 lv~hlh~f~re~~---lt~~E~~~~i~~l~~~G~-------~~E~~Llsdvl~~~~vd~~~~~ 63 (246)
T TIGR02465 11 IVEAVRDVLVRHE---VTFDEYRTGVQYLMKVAE-------AGETPLLLDVFFNSTIDEIENR 63 (246)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhc-------cCcHHHHHHHHHHHHHHHHHCC
Confidence 3555667777663 999999999999999876 6889999999988877655444
No 85
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=32.09 E-value=1.5e+02 Score=28.09 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=42.8
Q ss_pred cHHHHHHHHHhhccCCCChhhhHHHHHHHhhcccCCCCCCcCCCchHhHHHHHHHhhHhhhccC
Q psy9055 214 FLHLWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDEEGAWPVLIDDFVEWAQPQVKAAN 277 (284)
Q Consensus 214 ~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~dls~YDe~~AWP~liDeFVe~~r~~~~~~~ 277 (284)
++..--+|+++.. +|-|.|..-++|+..+.. .+-|+.|.|=+++-+=..+....
T Consensus 42 lv~hlh~f~re~~---lT~~E~~~~i~fL~~~G~-------~~E~~LlsDvl~~~lvd~~~~~~ 95 (281)
T TIGR02438 42 VLGAINETILKHK---VTYDEYNVLKQWLIDVGE-------DGEWPLFLDVFVEHSVEEVAYSH 95 (281)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhc-------cCchHHHHHHHHHHHHHHHhcCC
Confidence 4666777887664 999999999999998877 68899999998877766554443
No 86
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=31.51 E-value=57 Score=26.63 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHhcC----CCCCCccCHHHHHHHHHH--------------cCCCCCchHHHHHHHhhc--ccccccccHH
Q psy9055 60 DRKKLESLYSKYKD----ASEPDKILVEGIMKFLDD--------------LSLSPESKLVLIIAWRFK--AAAQCEFSRD 119 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d----~~~~~~I~~dG~~~~~ed--------------Lgv~ped~~~LvLa~~l~--a~~~g~~tr~ 119 (284)
-+..+.++|+.|++ ...=...+.+|=..|+++ |.++ +|+..=..-..++ +...| +|.+
T Consensus 10 Vq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LS-dD~~Ak~m~~qi~~~~~~fG-~~~~ 87 (108)
T PF08855_consen 10 VQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELS-DDPEAKDMKEQINAQLNQFG-YTPQ 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHcC-CCcc
Confidence 46788999999984 111133555555555444 4455 5544333333333 33345 5445
Q ss_pred ---HHHHHHHHhCCCcHHHHHhhc
Q psy9055 120 ---EFMNGMLELGCDSIEKLKMRL 140 (284)
Q Consensus 120 ---eF~~g~~~l~~~si~~lk~~l 140 (284)
++.+||.. |+++||+.+
T Consensus 88 ~l~~~fd~m~~----tLe~mkq~~ 107 (108)
T PF08855_consen 88 DLSQMFDQMNQ----TLERMKQEI 107 (108)
T ss_pred hHHHHHHHHHH----HHHHHHHhc
Confidence 55555554 666766543
No 87
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=31.46 E-value=2.6e+02 Score=24.48 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHhhhCCCHHHHHHHHHhCCC-ChHHHHHhhcCCCccchhccCCcccHHHHHHHHHHhcCCCC-------
Q psy9055 5 KSSQKDKVKRFISFTQTGELTAINCLSQNDW-KLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKYKDASE------- 76 (284)
Q Consensus 5 ~~~~~~~i~qF~~iT~~s~~~A~~~L~~~~w-~l~~A~~~fy~~~~~~~~~~~~~~~~~~l~~lFd~Y~d~~~------- 76 (284)
+...++....+..+-|.-+++|...|+..+- .+..|+.. .++.... .-++..++..+++...+++.-.
T Consensus 65 ~~~ek~~f~~L~~i~GIGpk~A~~il~~fg~~~l~~~i~~--~d~~~L~--~v~Gig~k~A~~I~~~l~~~~~~~~~~~~ 140 (192)
T PRK00116 65 TKEERELFRLLISVSGVGPKLALAILSGLSPEELVQAIAN--GDVKALT--KVPGIGKKTAERIVLELKDKLAAAASAAA 140 (192)
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHh--CCHHHHH--hCCCCCHHHHHHHHHHHHHHhhccccccc
Confidence 4445566778899999999999999998763 12222221 1221110 1245566777777766664211
Q ss_pred ---CCccCHHHHHHHHHHcCCCCCchHHHH
Q psy9055 77 ---PDKILVEGIMKFLDDLSLSPESKLVLI 103 (284)
Q Consensus 77 ---~~~I~~dG~~~~~edLgv~ped~~~Lv 103 (284)
+.....+-++..+..||+++..+...+
T Consensus 141 ~~~~~~~~~~ev~~aL~~LG~~~~~a~~~~ 170 (192)
T PRK00116 141 AAAAASSALEEAVSALVALGYKPKEASKAV 170 (192)
T ss_pred ccccccchHHHHHHHHHHcCCCHHHHHHHH
Confidence 000013556666666666666544443
No 88
>KOG0028|consensus
Probab=30.96 E-value=2.4e+02 Score=24.84 Aligned_cols=67 Identities=12% Similarity=0.246 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
....|...|.-+-+ ++.+.|.+.-+-+.+..||=+..|-.+--.-.-..--.-|+|+.+||...|+.
T Consensus 104 t~eEi~~afrl~D~-D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDD-DKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccc-cCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 33456666666654 34478999999999999999999887766655555566799999999998875
No 89
>KOG2873|consensus
Probab=30.41 E-value=93 Score=29.43 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=37.8
Q ss_pred hHHHHHhhhhhcccCCCCCCCCHHHHHHHHHHhhcCC----cccHHHHHHHHHhh
Q psy9055 175 KFKDFYQFTFNYAKNPGQKGLDLDMAITYWNIVLQGR----FKFLHLWCTFLQEH 225 (284)
Q Consensus 175 ~Fk~~Y~f~F~~~k~~~qk~l~~etAi~~W~lll~~~----~~~l~~W~~FL~~~ 225 (284)
.++.+|.=.|.|. +|-=+-|-..|+++|+-||.++ ..+++.-++|++.+
T Consensus 200 l~~qf~gaifaYD--eG~l~dD~vLA~alWRnlF~~r~~~D~~hle~vV~YvR~q 252 (284)
T KOG2873|consen 200 LERQFYGAIFAYD--EGFLSDDRVLATALWRNLFSGRGNVDLVHLEAVVRYVRSQ 252 (284)
T ss_pred HHHHHHHHHHHhc--ccccccchHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHH
Confidence 4566666555554 6666666789999999999987 36899999999876
No 90
>COG5250 RPB4 RNA polymerase II, fourth largest subunit [Transcription]
Probab=29.85 E-value=1e+02 Score=25.78 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=28.9
Q ss_pred HHHhhcccccccccHHHHHHHHHHhCCCcHHHHHhhccchhHhhhhc
Q psy9055 104 IAWRFKAAAQCEFSRDEFMNGMLELGCDSIEKLKMRLPSLEAELKDN 150 (284)
Q Consensus 104 La~~l~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~l~~l~~~~~~~ 150 (284)
+--.|+..-.++|.+..+ -.|-|+|.+.-|.-+|||.....|.
T Consensus 80 ~~~~L~~~gfh~fEiAql----GsL~c~saeEAktLiPSL~nkidD~ 122 (138)
T COG5250 80 LRTTLSGLGFHEFEIAQL----GSLFCQSAEEAKTLIPSLGNKIDDA 122 (138)
T ss_pred HHHHHccCCcchhhHHHh----hccccccHHHHHhhcccccccccHH
Confidence 333444444555555433 3588999999999999888776653
No 91
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=29.26 E-value=1.1e+02 Score=26.54 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHHHcCCCCCchHHHH--HHHhhcccccccccHHHHHHHHHHhCCC
Q psy9055 79 KILVEGIMKFLDDLSLSPESKLVLI--IAWRFKAAAQCEFSRDEFMNGMLELGCD 131 (284)
Q Consensus 79 ~I~~dG~~~~~edLgv~ped~~~Lv--La~~l~a~~~g~~tr~eF~~g~~~l~~~ 131 (284)
.|+.+-+.++..|+|++..++...+ |.+++....---++.+.|.+-+..+|.+
T Consensus 21 ~~~~~~~~kl~~~~~~~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp 75 (174)
T cd04752 21 GIDYEKVLKLTADAKFESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLP 75 (174)
T ss_pred cCCHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 4889999999999999999876544 7788853333448999999999888764
No 92
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=29.12 E-value=1.2e+02 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCCCch-HHH-------HHHHhhcccccccccHHH
Q psy9055 82 VEGIMKFLDDLSLSPESK-LVL-------IIAWRFKAAAQCEFSRDE 120 (284)
Q Consensus 82 ~dG~~~~~edLgv~ped~-~~L-------vLa~~l~a~~~g~~tr~e 120 (284)
++++..+.+.+.-.|++. ..+ .+.-.|..|.+| ++|+.
T Consensus 115 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~P~lG-~~Re~ 160 (293)
T PF09712_consen 115 LDNWQDFFSSLSPDPEDFLEAFWKEQYRETLGRWLQMPALG-PSREH 160 (293)
T ss_pred HHHHHHHHHhcccCchhhHhhhHHHHHHHHHHHHHcCCcCC-cCHHH
Confidence 566888888777777764 222 356688899999 99986
No 93
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=28.52 E-value=71 Score=24.39 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCCCCchHHHHHHHh-hcccccccccHHHHHHHHHHhCC
Q psy9055 93 SLSPESKLVLIIAWR-FKAAAQCEFSRDEFMNGMLELGC 130 (284)
Q Consensus 93 gv~ped~~~LvLa~~-l~a~~~g~~tr~eF~~g~~~l~~ 130 (284)
++++++...+--++. +-...-|.|+.+++...++.+|+
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~ 41 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL 41 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC
Confidence 345555555555543 34456799999999999998775
No 94
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=27.80 E-value=1.4e+02 Score=28.35 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhhccCCCChhhhHHHHHHHhhcccCCCCCCcCCCchHh-----HHHHHHHhhHh
Q psy9055 214 FLHLWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDEEGAWPVL-----IDDFVEWAQPQ 272 (284)
Q Consensus 214 ~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~dls~YDe~~AWP~l-----iDeFVe~~r~~ 272 (284)
.+..-.+|+++.. ||-|.|..-++|+..+.. .+-|+.| ++-||+-+...
T Consensus 28 lv~hlh~~~re~~---lt~~E~~~~i~~l~~~G~-------r~E~~Llsd~LGl~~lvd~~~~~ 81 (282)
T cd03460 28 LLSDLFKAIDDLD---ITPDEFWSGVDYLNDLGQ-------AGEAGLLAAGLGFEHFLDLRMDA 81 (282)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhh-------cCchhheecccchHHHHHHhcch
Confidence 4566677777653 999999999999998877 6789999 99999988543
No 95
>KOG2351|consensus
Probab=27.53 E-value=79 Score=26.57 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred HhhcccccccccHHHHHHHHHHhCCCcHHHHHhhccchhHhhhhc
Q psy9055 106 WRFKAAAQCEFSRDEFMNGMLELGCDSIEKLKMRLPSLEAELKDN 150 (284)
Q Consensus 106 ~~l~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~l~~l~~~~~~~ 150 (284)
.+|+....+.|.... +..|-|+|.+.-|.-+|||+..+.|+
T Consensus 78 ~iLs~~~lhkFE~A~----lgnLcpetaEEAkaLvPSL~nkidD~ 118 (134)
T KOG2351|consen 78 TILSGKGLHKFEVAQ----LGNLCPETAEEAKALVPSLENKIDDD 118 (134)
T ss_pred HHHhhCCcchhhHHH----HhccCcccHHHHHHhccccccccCHH
Confidence 344555555565543 34588999999999999999886653
No 96
>PHA01083 hypothetical protein
Probab=27.20 E-value=90 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=38.0
Q ss_pred ccCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHHh
Q psy9055 79 KILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLEL 128 (284)
Q Consensus 79 ~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 128 (284)
.|+-+-+..+++-+|+||+.+...+.+..-+.|.. |.-|.+-++++
T Consensus 43 ~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKl 88 (149)
T PHA01083 43 YISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQ 88 (149)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 58899999999999999999999999998887764 45566666654
No 97
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=27.04 E-value=1.4e+02 Score=28.37 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhhccCCCChhhhHHHHHHHhhcccCCCCCCcCCCchHh-----HHHHHHHhhHhh
Q psy9055 214 FLHLWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDEEGAWPVL-----IDDFVEWAQPQV 273 (284)
Q Consensus 214 ~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~dls~YDe~~AWP~l-----iDeFVe~~r~~~ 273 (284)
++..-.+|+++.. ||-|.|..-++|+..+.. .+-|+.| ++-||+-+-..+
T Consensus 31 lv~hlh~~~re~~---lt~~E~~~~i~~l~~~G~-------r~E~~Llsd~LGl~~~~d~~vd~~ 85 (285)
T TIGR02439 31 VLSDLFRLIEDLD---ITPDEFWSAVDYLNRLGQ-------ANEAGLLAAGLGFEHFLDLRLDAA 85 (285)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhc-------cCchhheecccccchHHHHHHHHH
Confidence 4566677777653 999999999999999876 7789999 998998885433
No 98
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=25.89 E-value=15 Score=26.75 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=30.6
Q ss_pred CccCHHHHHHHHHHcCCCCCchHHHHHHHhh--cccccccccHHHHHHHHHHhCCCcHHHHHhh
Q psy9055 78 DKILVEGIMKFLDDLSLSPESKLVLIIAWRF--KAAAQCEFSRDEFMNGMLELGCDSIEKLKMR 139 (284)
Q Consensus 78 ~~I~~dG~~~~~edLgv~ped~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l~~~si~~lk~~ 139 (284)
.....+-+.+++++.|++|+ ++..++-+-+ +..+...+ +.-++.|..-|+.|+++..+.
T Consensus 14 s~~e~~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Yi--~~Il~~W~~~gi~t~e~~~~~ 74 (77)
T PF07261_consen 14 SPSEIEKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNYI--EKILNNWKQKGIKTVEDAEEY 74 (77)
T ss_dssp -HHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHHH--HHHHHHHHHCT--SCCCCT--
T ss_pred CHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHHH--HHHHHHHHHcCCCCHHHHHHH
Confidence 34556666777776666665 3333333322 33443333 356788999999988776554
No 99
>PLN02223 phosphoinositide phospholipase C
Probab=25.46 E-value=1.2e+02 Score=31.44 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHc-------CCCCCchHHHHHHHhh------cccccccccHHHHHHHHH
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDL-------SLSPESKLVLIIAWRF------KAAAQCEFSRDEFMNGML 126 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edL-------gv~ped~~~LvLa~~l------~a~~~g~~tr~eF~~g~~ 126 (284)
.+..+..+|++|.+ +.+.|+++++.+|+.=| +...++...++=...- +...-+.++.++|..-+.
T Consensus 14 ~p~~v~~~f~~~~~--~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 14 QPDLILNFFGNEFH--GYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CcHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 45789999999974 34689999999999433 5666666555433211 112224588888888776
Q ss_pred H
Q psy9055 127 E 127 (284)
Q Consensus 127 ~ 127 (284)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 5
No 100
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=25.44 E-value=55 Score=24.37 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchHH
Q psy9055 62 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLV 101 (284)
Q Consensus 62 ~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~ 101 (284)
.-|-.+|-.|-.+.+ +.|...+++++++.+||++..+.+
T Consensus 4 Sli~tl~Gdy~~~~g-~~i~~~~Li~ll~~~Gv~e~avR~ 42 (70)
T PF07848_consen 4 SLIVTLLGDYLRPRG-GWIWVASLIRLLAAFGVSESAVRT 42 (70)
T ss_dssp HHHHHHHHHHCCTTT-S-EEHHHHHHHHCCTT--HHHHHH
T ss_pred eehHHHHHHHhccCC-CceeHHHHHHHHHHcCCChHHHHH
Confidence 457778989987644 679999999999999999887644
No 101
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=24.94 E-value=77 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHHcCCCCCchH
Q psy9055 64 LESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKL 100 (284)
Q Consensus 64 l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~ped~~ 100 (284)
|--||++|.+.+.....+.+-+.+.+++.|.+.+++.
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aGF~~~eI~ 41 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAGFEDEEIN 41 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcCCCHHHHH
Confidence 5679999998754456799999999999999999863
No 102
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=24.39 E-value=2.5e+02 Score=26.10 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhhccCCCChhhhHHHHHHHhhcccCCCCCCcCCCchHhHHHHHHHhhHhhh
Q psy9055 214 FLHLWCTFLQEHHKRSIPKDTWNLLLDFATATNEDMSNYDEEGAWPVLIDDFVEWAQPQVK 274 (284)
Q Consensus 214 ~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~dls~YDe~~AWP~liDeFVe~~r~~~~ 274 (284)
.+..--+|+++.. +|-|.|..-++|+..+.. .+-|+.|.|=+|+-+-..+.
T Consensus 12 lv~~lh~f~re~~---lt~~E~~~~~~~l~~~G~-------r~E~~Ll~Dvl~~~~vd~~~ 62 (247)
T cd03462 12 IVDAIRDVLLKHE---VTYDEYRAGVQYLIKVGE-------AGEWPLLLDVFFNSTIEEVK 62 (247)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhc-------cCchhHhHHHHHHHHHHHHH
Confidence 3555667777653 999999999999998876 78899999999777665443
No 103
>PLN02230 phosphoinositide phospholipase C 4
Probab=24.38 E-value=1.9e+02 Score=30.31 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCC-----CCCchHHHHHHHhhc-----ccccccccHHHHHHHHHH
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSL-----SPESKLVLIIAWRFK-----AAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv-----~ped~~~LvLa~~l~-----a~~~g~~tr~eF~~g~~~ 127 (284)
.+..+..+|.+|.+. .+.|+.+++.+|+.+-.= ++++..-++.-+.-. ...-+.++.++|..-+..
T Consensus 27 p~~ei~~lf~~~s~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADG--DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCC--CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 568999999999753 268999999999987652 233333444322111 112345999999987755
No 104
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.97 E-value=81 Score=29.13 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCC-CCchHHHHHHHhhc
Q psy9055 82 VEGIMKFLDDLSLS-PESKLVLIIAWRFK 109 (284)
Q Consensus 82 ~dG~~~~~edLgv~-ped~~~LvLa~~l~ 109 (284)
++++.+||.|||.. ...-..-+|-|+++
T Consensus 57 ~~~~~kYl~dl~cP~~~~~~~~~ldWLL~ 85 (249)
T PF10036_consen 57 PKAFEKYLKDLGCPFSSESRQEQLDWLLG 85 (249)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 78999999999999 45667778888877
No 105
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=23.58 E-value=1.3e+02 Score=23.72 Aligned_cols=40 Identities=10% Similarity=-0.040 Sum_probs=34.2
Q ss_pred hcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcc
Q psy9055 71 YKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKA 110 (284)
Q Consensus 71 Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a 110 (284)
|++++..-.++.+...+.|..+|..+.++.-|--||..|-
T Consensus 5 ~~s~~g~y~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~ 44 (92)
T cd01102 5 LESQNGRYKLTFAEAALACKARGAHLATPGQLEAAWQDGF 44 (92)
T ss_pred ecCCCCCcccCHHHHHHHHHHcCCEeCCHHHHHHHHHcch
Confidence 3444555679999999999999999999999999999874
No 106
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=23.55 E-value=35 Score=28.17 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCChHHHHHhhcCCC
Q psy9055 12 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 48 (284)
Q Consensus 12 i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~~~fy~~~ 48 (284)
+..+.++.|.+++.+.++.++.+|.++.+...|-.+|
T Consensus 100 ~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~~ 136 (143)
T PF10075_consen 100 LSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPNP 136 (143)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---H
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecCC
Confidence 4567788899999999999999999997766655443
No 107
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=23.13 E-value=1.3e+02 Score=22.78 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHhCCCcHHHHHhhccchh
Q psy9055 117 SRDEFMNGMLELGCDSIEKLKMRLPSLE 144 (284)
Q Consensus 117 tr~eF~~g~~~l~~~si~~lk~~l~~l~ 144 (284)
|+.+|+--+++ |.|++.|-+.+.++.
T Consensus 2 tk~eyLlkfRk--css~eTLEkv~e~~~ 27 (71)
T PRK10391 2 TVQDYLLKFRK--ISSLESLEKLFDHLN 27 (71)
T ss_pred cHHHHHHHHHh--cCcHHHHHHHHHHhh
Confidence 67777765554 888888877776333
No 108
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=22.99 E-value=2.5e+02 Score=19.79 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHhhh-CCCHHHHHHHHHhCCCChHHHHHhhcC
Q psy9055 9 KDKVKRFISFT-QTGELTAINCLSQNDWKLDLASDNYFQ 46 (284)
Q Consensus 9 ~~~i~qF~~iT-~~s~~~A~~~L~~~~w~l~~A~~~fy~ 46 (284)
.+.|.|-..+. |.|..+-++=|++.|-|++.|++....
T Consensus 10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhc
Confidence 45666666554 778899999999999999999998653
No 109
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=22.95 E-value=67 Score=23.22 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCC--CCC-CccCH
Q psy9055 61 RKKLESLYSKYKDA--SEP-DKILV 82 (284)
Q Consensus 61 ~~~l~~lFd~Y~d~--~~~-~~I~~ 82 (284)
.+.++.+|+||..+ +++ |+|+.
T Consensus 15 k~~~e~I~~KY~~~d~~~~~DeIDL 39 (58)
T PF10384_consen 15 KSRWESIIEKYGQPDFEDQGDEIDL 39 (58)
T ss_dssp HHHHHHHHHHHCSG-TCCSSEBCTT
T ss_pred HHHHHHHHHHhcCcccCCccceeec
Confidence 46789999999975 332 66764
No 110
>KOG0044|consensus
Probab=22.88 E-value=2.6e+02 Score=25.01 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHHhcCCCCCCccCHHHHHHHHH----HcC-----CCCCchHHHH--HHHhhcccccccccHHHHHHHH
Q psy9055 57 SSVDRKKLESLYSKYKDASEPDKILVEGIMKFLD----DLS-----LSPESKLVLI--IAWRFKAAAQCEFSRDEFMNGM 125 (284)
Q Consensus 57 ~~~~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~e----dLg-----v~ped~~~Lv--La~~l~a~~~g~~tr~eF~~g~ 125 (284)
+++...++.-.|.-| |.+..+.|+-+.+...+. -.| -.++.+.-.| +--+|.+..-|.+|.++|++|.
T Consensus 95 rGt~eekl~w~F~ly-D~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 95 RGTLEEKLKWAFRLY-DLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred CCcHHHHhhhhheee-cCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Q ss_pred HH
Q psy9055 126 LE 127 (284)
Q Consensus 126 ~~ 127 (284)
++
T Consensus 174 ~~ 175 (193)
T KOG0044|consen 174 KA 175 (193)
T ss_pred hh
No 111
>PF02001 DUF134: Protein of unknown function DUF134; InterPro: IPR002852 The bacterial and archaeal proteins in this family have no known function.
Probab=22.84 E-value=52 Score=26.69 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=29.2
Q ss_pred HHcCCCCCchHHHHHHHhhc------ccccccccHHHHHHHHHH
Q psy9055 90 DDLSLSPESKLVLIIAWRFK------AAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 90 edLgv~ped~~~LvLa~~l~------a~~~g~~tr~eF~~g~~~ 127 (284)
+.+-+++|.++.|-|+.+.| |..|| |||.-|-+-+.+
T Consensus 38 ~~V~L~~dElEAiRL~D~egl~QeeaA~~Mg-VSR~T~~ril~~ 80 (106)
T PF02001_consen 38 EPVVLTVDELEAIRLVDYEGLSQEEAAERMG-VSRPTFQRILES 80 (106)
T ss_pred ceEEeeHHHHHHHHHHHHcCCCHHHHHHHcC-CcHHHHHHHHHH
Confidence 34677788888889988887 67799 999988776654
No 112
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=22.56 E-value=6.3e+02 Score=23.50 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHhhhCC-CHHHHHHHHHhCCCC
Q psy9055 13 KRFISFTQT-GELTAINCLSQNDWK 36 (284)
Q Consensus 13 ~qF~~iT~~-s~~~A~~~L~~~~w~ 36 (284)
++|.++..+ |.+.+.++|+...|.
T Consensus 29 ~~~~~L~~~~s~~e~~~~L~~t~Y~ 53 (352)
T PRK01198 29 EKYERLLEMKSLEEIIRFLEETEYK 53 (352)
T ss_pred HHHHHHHhCCCHHHHHHHHhcCCcH
Confidence 578888888 779999999988643
No 113
>PRK03980 flap endonuclease-1; Provisional
Probab=22.24 E-value=2.8e+02 Score=26.18 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHhhhCC---------CHHHHHHHHHhCCCChHHHHHhhcCCCccchhccCCcccHHHHHHHHHHhcCCCCC---
Q psy9055 10 DKVKRFISFTQT---------GELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKYKDASEP--- 77 (284)
Q Consensus 10 ~~i~qF~~iT~~---------s~~~A~~~L~~~~w~l~~A~~~fy~~~~~~~~~~~~~~~~~~l~~lFd~Y~d~~~~--- 77 (284)
+.+-.|+-++|| -+++|..+|+.++ +|+..++..-.+. .+-+.+.++|-.=...++.
T Consensus 177 ~q~id~~iL~G~Dy~~GI~GIG~ktA~kLi~~~~-sle~i~~~~~~~~----------~~~~~~r~~f~~p~v~~~~~~~ 245 (292)
T PRK03980 177 EQLIDIAILVGTDYNPGIKGIGPKTALKLIKKHG-DLEKVLEERGFEI----------ENYDEIREFFLNPPVTDDYELK 245 (292)
T ss_pred HHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHCC-CHHHHHHhccCCC----------CCHHHHHHHhcCCCCCCCCCcc
Confidence 445666776654 5799999999998 8998887432111 1213444444332111111
Q ss_pred -CccCHHHHHHHH-HHcCCCCCchH
Q psy9055 78 -DKILVEGIMKFL-DDLSLSPESKL 100 (284)
Q Consensus 78 -~~I~~dG~~~~~-edLgv~ped~~ 100 (284)
..++.||+.+|+ +..|.+++-+.
T Consensus 246 ~~~pd~~~l~~fl~~e~~f~~~rv~ 270 (292)
T PRK03980 246 WKEPDKEGIIEFLVEEHDFSEERVK 270 (292)
T ss_pred CCCCCHHHHHHHHhccCCCCHHHHH
Confidence 468999999977 79999988554
No 114
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=21.58 E-value=1e+02 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCChHHHH
Q psy9055 9 KDKVKRFISFTQTGELTAINCLSQNDWKLDLAS 41 (284)
Q Consensus 9 ~~~i~qF~~iT~~s~~~A~~~L~~~~w~l~~A~ 41 (284)
-+.+.++..+...+++.|+++|..|- .|-.|+
T Consensus 32 ~ell~~mK~l~~~~p~~ar~lL~~nP-qLa~Al 63 (84)
T PF14327_consen 32 YELLSQMKQLAQQNPEQARQLLQQNP-QLAYAL 63 (84)
T ss_dssp HHHHHHHHHHHC----HHHHHHHS-T-HHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHCc-HHHHHH
Confidence 35678999999999999999999987 666655
No 115
>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=21.05 E-value=1.7e+02 Score=23.28 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=33.6
Q ss_pred hcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcc
Q psy9055 71 YKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKA 110 (284)
Q Consensus 71 Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a 110 (284)
|+.+.+.=.+......+.|+.+|..+.++.-|-.||+.|=
T Consensus 5 ~~~~~grY~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gl 44 (95)
T cd03518 5 YQPRLGRYNLNFHEAQQACEEQDATLASFEQLYQAWTEGL 44 (95)
T ss_pred eeCCCCccccCHHHHHHHHHHcCCeeCCHHHHHHHHHcCc
Confidence 4454444458899999999999999999999999999874
No 116
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=20.76 E-value=2.8e+02 Score=19.55 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 80 ILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 80 I~~dG~~~~~edLgv~ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
|...-+.+++..++|++++--...|-..+-...-|....+||+.=.+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 344557788888889888887777777777777788888888875544
No 117
>PLN02952 phosphoinositide phospholipase C
Probab=20.65 E-value=2.9e+02 Score=29.07 Aligned_cols=66 Identities=9% Similarity=0.165 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcC----CCCCchHHHHHHHhhcc----c--ccccccHHHHHHHHHH
Q psy9055 59 VDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLS----LSPESKLVLIIAWRFKA----A--AQCEFSRDEFMNGMLE 127 (284)
Q Consensus 59 ~~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLg----v~ped~~~LvLa~~l~a----~--~~g~~tr~eF~~g~~~ 127 (284)
..++.|..+|.+|... .+.|+.+.+.+|+.+-. +++++..-|+-.. ++. . .-+.++.++|...+..
T Consensus 35 ~~r~ei~~lf~~~~~~--~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 35 EPPDDVKDVFCKFSVG--GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEV-INRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred CChHHHHHHHHHHhCC--CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHH-HhhccccccccccCcCHHHHHHHHcC
Confidence 3678999999999863 35799999999997643 3344444333211 111 1 1134889999998864
No 118
>PLN02222 phosphoinositide phospholipase C 2
Probab=20.64 E-value=2e+02 Score=30.00 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHcCCC----CCchHHHHHHHhhcccccccccHHHHHHHHHH
Q psy9055 60 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLS----PESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 127 (284)
Q Consensus 60 ~~~~l~~lFd~Y~d~~~~~~I~~dG~~~~~edLgv~----ped~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 127 (284)
-++.|..+|.+|.+ .+.|+.+++.+|+.+-.=. .++..-|+=.+ -....-+.++.++|..-+..
T Consensus 23 ~~~ei~~if~~~~~---~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE---NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC---CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 45799999999986 2589999999999875543 33333333222 11223456999999998866
No 119
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=20.60 E-value=2e+02 Score=22.82 Aligned_cols=40 Identities=10% Similarity=-0.079 Sum_probs=33.2
Q ss_pred hcCCCCCCccCHHHHHHHHHHcCCCCCchHHHHHHHhhcc
Q psy9055 71 YKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKA 110 (284)
Q Consensus 71 Y~d~~~~~~I~~dG~~~~~edLgv~ped~~~LvLa~~l~a 110 (284)
|+.+.+.-.++.+...+.|++.|..+.++.-|-.||..|=
T Consensus 5 ~~~~~grY~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~ 44 (93)
T cd03515 5 LRSRSGKYKLTYTEAKAACEAEGAHLATYSQLSAAQQLGF 44 (93)
T ss_pred eeCCCCccccCHHHHHHHHHHcCCccCCHHHHHHHHHcCc
Confidence 3444443468899999999999999999999999999774
No 120
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.30 E-value=5.2e+02 Score=21.63 Aligned_cols=16 Identities=25% Similarity=0.575 Sum_probs=11.3
Q ss_pred cccccHHHHHHHHHHh
Q psy9055 113 QCEFSRDEFMNGMLEL 128 (284)
Q Consensus 113 ~g~~tr~eF~~g~~~l 128 (284)
--+|.+.+|++-+.++
T Consensus 74 h~evas~~Fl~el~kl 89 (139)
T cd03567 74 HSEVGKFRFLNELIKL 89 (139)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3567778888777664
No 121
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=20.27 E-value=1.3e+02 Score=15.71 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.3
Q ss_pred cccccHHHHHHHHH
Q psy9055 113 QCEFSRDEFMNGML 126 (284)
Q Consensus 113 ~g~~tr~eF~~g~~ 126 (284)
.|.++.++|...++
T Consensus 14 ~g~i~~~e~~~~~~ 27 (29)
T smart00054 14 DGKIDFEEFKDLLK 27 (29)
T ss_pred CCcEeHHHHHHHHH
Confidence 44555555555544
No 122
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=20.07 E-value=2.3e+02 Score=21.69 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=15.1
Q ss_pred hhhhhhHHHHhhChhhHHHHHhhh
Q psy9055 160 KMRLPSLEAELKDNLKFKDFYQFT 183 (284)
Q Consensus 160 ~~~~~~l~~~l~d~~~Fk~~Y~f~ 183 (284)
+..|.+|.++++ .+.|+-||--|
T Consensus 39 K~sirrLeqevn-kERFrmiYLQT 61 (79)
T PF09036_consen 39 KASIRRLEQEVN-KERFRMIYLQT 61 (79)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333446766664 67899999655
Done!