Query psy9056
Match_columns 359
No_of_seqs 245 out of 3068
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 17:48:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 9E-59 1.9E-63 484.0 37.3 358 1-359 117-474 (737)
2 TIGR02437 FadB fatty oxidation 100.0 1.6E-56 3.4E-61 466.2 37.1 340 1-359 111-452 (714)
3 PRK11730 fadB multifunctional 100.0 1.9E-56 4E-61 466.5 36.2 338 1-359 111-452 (715)
4 PRK11154 fadJ multifunctional 100.0 4.1E-56 9E-61 463.8 36.8 337 1-359 110-449 (708)
5 TIGR02440 FadJ fatty oxidation 100.0 4.3E-56 9.2E-61 462.8 36.5 337 1-359 105-444 (699)
6 KOG1680|consensus 100.0 1.1E-30 2.3E-35 235.0 11.8 154 1-212 136-289 (290)
7 PRK08150 enoyl-CoA hydratase; 100.0 1.7E-29 3.7E-34 234.1 15.2 154 1-212 101-254 (255)
8 PRK05862 enoyl-CoA hydratase; 100.0 1.8E-29 4E-34 234.3 15.1 153 1-211 103-255 (257)
9 PLN02600 enoyl-CoA hydratase 100.0 4.7E-29 1E-33 230.7 15.6 153 1-211 97-249 (251)
10 PRK08252 enoyl-CoA hydratase; 100.0 3.7E-29 8E-34 231.9 14.8 153 1-211 100-252 (254)
11 PRK05980 enoyl-CoA hydratase; 100.0 3.6E-29 7.8E-34 232.8 14.0 152 1-210 109-260 (260)
12 TIGR02280 PaaB1 phenylacetate 100.0 5.4E-29 1.2E-33 231.0 15.1 153 1-211 102-254 (256)
13 PRK09076 enoyl-CoA hydratase; 100.0 5.7E-29 1.2E-33 231.1 15.0 153 1-211 104-256 (258)
14 PRK07658 enoyl-CoA hydratase; 100.0 5.4E-29 1.2E-33 231.3 14.8 153 1-211 103-255 (257)
15 PRK06563 enoyl-CoA hydratase; 100.0 6.1E-29 1.3E-33 230.6 14.7 153 1-211 101-253 (255)
16 PRK08138 enoyl-CoA hydratase; 100.0 8.9E-29 1.9E-33 230.2 15.3 153 1-211 107-259 (261)
17 PRK09674 enoyl-CoA hydratase-i 100.0 8.6E-29 1.9E-33 229.5 15.2 153 1-211 101-253 (255)
18 PRK05809 3-hydroxybutyryl-CoA 100.0 1E-28 2.2E-33 229.7 15.3 153 1-211 106-258 (260)
19 PRK07799 enoyl-CoA hydratase; 100.0 9.1E-29 2E-33 230.4 14.7 153 1-211 109-261 (263)
20 PRK06494 enoyl-CoA hydratase; 100.0 1.1E-28 2.4E-33 229.3 15.0 153 1-211 103-257 (259)
21 PRK08140 enoyl-CoA hydratase; 100.0 1.6E-28 3.4E-33 228.7 15.2 152 1-210 108-259 (262)
22 PRK09245 enoyl-CoA hydratase; 100.0 1.3E-28 2.8E-33 229.8 14.6 153 1-211 112-264 (266)
23 PLN02664 enoyl-CoA hydratase/d 100.0 1.3E-28 2.8E-33 230.7 14.6 154 1-211 120-273 (275)
24 PRK06142 enoyl-CoA hydratase; 100.0 1.1E-28 2.4E-33 230.9 14.1 153 1-210 118-270 (272)
25 PRK07657 enoyl-CoA hydratase; 100.0 1.7E-28 3.6E-33 228.3 14.7 153 1-211 106-258 (260)
26 PLN02888 enoyl-CoA hydratase 100.0 2.9E-28 6.3E-33 227.1 15.4 154 1-212 108-263 (265)
27 PRK06127 enoyl-CoA hydratase; 100.0 2.5E-28 5.5E-33 228.1 15.0 153 1-211 115-267 (269)
28 PRK07511 enoyl-CoA hydratase; 100.0 2.9E-28 6.3E-33 226.7 15.1 152 1-210 107-258 (260)
29 PRK03580 carnitinyl-CoA dehydr 100.0 3.2E-28 6.9E-33 226.5 14.9 153 1-211 103-259 (261)
30 PRK08258 enoyl-CoA hydratase; 100.0 3.3E-28 7.2E-33 228.2 15.1 153 1-211 122-275 (277)
31 PRK07659 enoyl-CoA hydratase; 100.0 2.4E-28 5.2E-33 227.2 13.9 152 1-211 107-258 (260)
32 PLN03214 probable enoyl-CoA hy 100.0 4.4E-28 9.5E-33 227.2 15.7 155 1-213 116-271 (278)
33 TIGR01929 menB naphthoate synt 100.0 2.6E-28 5.7E-33 226.7 13.7 153 1-212 106-258 (259)
34 PRK08139 enoyl-CoA hydratase; 100.0 5.2E-28 1.1E-32 225.5 15.1 152 1-211 113-264 (266)
35 PRK06143 enoyl-CoA hydratase; 100.0 5.7E-28 1.2E-32 224.1 15.2 148 1-207 109-256 (256)
36 PRK05981 enoyl-CoA hydratase; 100.0 4.5E-28 9.7E-33 226.2 14.4 153 1-211 112-264 (266)
37 PRK06688 enoyl-CoA hydratase; 100.0 5.1E-28 1.1E-32 225.0 14.6 152 1-210 105-256 (259)
38 PRK06210 enoyl-CoA hydratase; 100.0 4.5E-28 9.7E-33 226.9 14.0 153 1-211 117-270 (272)
39 PF02737 3HCDH_N: 3-hydroxyacy 100.0 9.2E-28 2E-32 211.0 14.8 138 222-359 1-138 (180)
40 PRK05995 enoyl-CoA hydratase; 100.0 8.8E-28 1.9E-32 223.7 14.9 152 1-211 108-260 (262)
41 PRK07468 enoyl-CoA hydratase; 100.0 1.2E-27 2.6E-32 222.7 14.6 152 1-211 109-260 (262)
42 PRK07396 dihydroxynaphthoic ac 100.0 1.3E-27 2.9E-32 223.6 14.7 153 1-212 116-268 (273)
43 PRK09120 p-hydroxycinnamoyl Co 99.9 2E-27 4.4E-32 222.6 15.1 149 1-207 113-264 (275)
44 TIGR03210 badI 2-ketocyclohexa 99.9 2.1E-27 4.5E-32 220.4 14.6 152 1-212 103-255 (256)
45 PRK07260 enoyl-CoA hydratase; 99.9 2E-27 4.4E-32 220.4 14.6 149 1-207 107-255 (255)
46 COG1250 FadB 3-hydroxyacyl-CoA 99.9 2.9E-27 6.3E-32 221.3 15.6 142 218-359 1-142 (307)
47 PRK05674 gamma-carboxygeranoyl 99.9 1.6E-27 3.5E-32 222.1 13.5 152 1-211 110-262 (265)
48 PRK08259 enoyl-CoA hydratase; 99.9 2.8E-27 6E-32 219.2 14.8 148 1-207 102-249 (254)
49 PRK07509 enoyl-CoA hydratase; 99.9 2E-27 4.4E-32 221.3 14.0 151 1-211 111-261 (262)
50 PRK11423 methylmalonyl-CoA dec 99.9 2.2E-27 4.8E-32 220.7 14.1 153 1-211 105-259 (261)
51 PRK05864 enoyl-CoA hydratase; 99.9 2.6E-27 5.6E-32 222.1 14.3 153 1-211 118-273 (276)
52 PLN02921 naphthoate synthase 99.9 4.5E-27 9.7E-32 224.4 15.4 154 1-213 170-323 (327)
53 PRK06495 enoyl-CoA hydratase; 99.9 5.7E-27 1.2E-31 217.6 14.4 150 1-211 106-255 (257)
54 PRK07938 enoyl-CoA hydratase; 99.9 5.1E-27 1.1E-31 216.8 14.0 147 1-208 103-249 (249)
55 PRK08260 enoyl-CoA hydratase; 99.9 5.9E-27 1.3E-31 221.7 14.4 155 1-213 122-278 (296)
56 PF00378 ECH: Enoyl-CoA hydrat 99.9 4.3E-27 9.4E-32 216.9 12.2 147 1-205 99-245 (245)
57 PRK07327 enoyl-CoA hydratase; 99.9 9.2E-27 2E-31 217.4 14.3 149 1-211 115-266 (268)
58 PRK08321 naphthoate synthase; 99.9 1.3E-26 2.9E-31 219.7 15.3 153 1-212 144-297 (302)
59 PRK06023 enoyl-CoA hydratase; 99.9 1.4E-26 2.9E-31 214.3 15.0 146 1-205 106-251 (251)
60 PRK07854 enoyl-CoA hydratase; 99.9 1E-26 2.2E-31 214.1 14.0 147 1-211 95-241 (243)
61 PRK06144 enoyl-CoA hydratase; 99.9 1.4E-26 3.1E-31 215.5 13.9 149 1-211 111-260 (262)
62 TIGR03189 dienoyl_CoA_hyt cycl 99.9 2.4E-26 5.3E-31 212.5 15.3 150 1-211 98-249 (251)
63 PLN02157 3-hydroxyisobutyryl-C 99.9 1.8E-26 3.9E-31 224.8 14.1 189 1-206 142-359 (401)
64 COG1024 CaiD Enoyl-CoA hydrata 99.9 3.6E-26 7.8E-31 212.3 14.1 150 1-209 107-256 (257)
65 PRK12478 enoyl-CoA hydratase; 99.9 4.8E-26 1E-30 215.4 14.6 151 1-213 121-281 (298)
66 PRK06072 enoyl-CoA hydratase; 99.9 4.7E-26 1E-30 210.3 14.2 149 1-211 98-246 (248)
67 PRK07827 enoyl-CoA hydratase; 99.9 2.5E-26 5.5E-31 213.6 12.5 149 1-210 110-258 (260)
68 PRK05617 3-hydroxyisobutyryl-C 99.9 1.5E-26 3.3E-31 222.6 10.7 191 1-211 109-324 (342)
69 PRK05870 enoyl-CoA hydratase; 99.9 3.2E-26 6.9E-31 211.6 12.1 145 1-205 104-249 (249)
70 PRK08184 benzoyl-CoA-dihydrodi 99.9 3.1E-26 6.6E-31 231.3 11.8 153 1-211 379-546 (550)
71 TIGR03222 benzo_boxC benzoyl-C 99.9 3.9E-26 8.5E-31 229.9 12.4 153 1-211 375-542 (546)
72 PLN02874 3-hydroxyisobutyryl-C 99.9 4.5E-26 9.7E-31 222.0 11.8 194 1-211 114-337 (379)
73 PRK07112 polyketide biosynthes 99.9 1.1E-25 2.4E-30 208.7 13.8 149 1-211 105-253 (255)
74 PRK07110 polyketide biosynthes 99.9 2.1E-25 4.5E-30 206.2 15.3 144 1-202 103-246 (249)
75 PRK07819 3-hydroxybutyryl-CoA 99.9 5.1E-25 1.1E-29 207.4 16.1 142 218-359 3-145 (286)
76 PLN02988 3-hydroxyisobutyryl-C 99.9 1.8E-25 3.8E-30 217.1 13.2 189 1-206 114-331 (381)
77 PRK06190 enoyl-CoA hydratase; 99.9 1.9E-24 4.2E-29 200.5 15.7 147 1-205 103-252 (258)
78 KOG1679|consensus 99.9 2.8E-25 6E-30 192.3 6.7 157 1-211 133-289 (291)
79 PLN02851 3-hydroxyisobutyryl-C 99.9 5.4E-24 1.2E-28 207.4 15.1 190 1-207 147-365 (407)
80 PRK07066 3-hydroxybutyryl-CoA 99.9 9E-24 2E-28 200.8 15.7 138 218-359 5-143 (321)
81 PRK08268 3-hydroxy-acyl-CoA de 99.9 2.5E-23 5.5E-28 209.8 16.6 142 218-359 5-146 (507)
82 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 2.2E-23 4.8E-28 209.7 15.8 142 218-359 3-144 (503)
83 KOG2304|consensus 99.9 5E-24 1.1E-28 186.6 8.3 142 218-359 9-156 (298)
84 PRK08788 enoyl-CoA hydratase; 99.9 5.9E-23 1.3E-27 192.7 15.9 152 1-211 130-282 (287)
85 PRK08293 3-hydroxybutyryl-CoA 99.9 3.7E-22 8E-27 188.3 16.4 142 218-359 1-144 (287)
86 PRK05808 3-hydroxybutyryl-CoA 99.9 3.8E-22 8.3E-27 187.8 15.9 141 219-359 2-142 (282)
87 PRK07530 3-hydroxybutyryl-CoA 99.9 4.8E-22 1E-26 188.0 16.5 142 218-359 2-143 (292)
88 PRK06035 3-hydroxyacyl-CoA deh 99.9 6E-22 1.3E-26 187.2 16.4 142 218-359 1-145 (291)
89 PLN02545 3-hydroxybutyryl-CoA 99.9 9.7E-22 2.1E-26 186.2 16.4 142 218-359 2-143 (295)
90 KOG1684|consensus 99.9 1.1E-22 2.4E-27 188.7 8.9 202 1-207 144-361 (401)
91 PRK05869 enoyl-CoA hydratase; 99.9 4.6E-22 9.9E-27 180.7 11.9 100 1-115 108-207 (222)
92 PRK06213 enoyl-CoA hydratase; 99.9 6.1E-22 1.3E-26 180.9 11.7 129 1-186 100-228 (229)
93 PRK08290 enoyl-CoA hydratase; 99.9 9E-22 2E-26 185.5 12.3 134 1-194 127-262 (288)
94 PRK09260 3-hydroxybutyryl-CoA 99.9 5.5E-21 1.2E-25 180.4 16.3 140 220-359 1-141 (288)
95 TIGR03200 dearomat_oah 6-oxocy 99.9 2.9E-21 6.3E-26 183.5 14.1 181 1-206 133-329 (360)
96 PRK08272 enoyl-CoA hydratase; 99.8 2.6E-20 5.6E-25 176.9 12.3 97 1-115 136-232 (302)
97 PRK06129 3-hydroxyacyl-CoA deh 99.8 2.9E-19 6.3E-24 170.2 16.2 141 219-359 1-142 (308)
98 PRK08269 3-hydroxybutyryl-CoA 99.8 3.4E-19 7.5E-24 169.7 14.7 129 231-359 1-139 (314)
99 PLN02267 enoyl-CoA hydratase/i 99.8 1.1E-19 2.3E-24 167.0 10.7 101 1-114 103-204 (239)
100 COG0447 MenB Dihydroxynaphthoi 99.8 3.1E-20 6.7E-25 161.4 4.9 156 1-215 125-280 (282)
101 KOG0016|consensus 99.8 3E-19 6.5E-24 159.7 11.3 149 1-207 116-264 (266)
102 KOG1681|consensus 99.8 3.6E-19 7.8E-24 155.8 7.8 151 1-209 135-287 (292)
103 TIGR03222 benzo_boxC benzoyl-C 99.8 1.2E-18 2.7E-23 175.8 10.7 107 1-120 128-237 (546)
104 PRK08184 benzoyl-CoA-dihydrodi 99.8 2.7E-18 5.7E-23 173.9 10.9 105 1-118 132-239 (550)
105 PRK07531 bifunctional 3-hydrox 99.7 1.8E-17 3.9E-22 167.4 15.5 137 219-359 3-140 (495)
106 PRK06130 3-hydroxybutyryl-CoA 99.7 2.3E-17 5E-22 157.3 15.4 136 219-359 3-139 (311)
107 KOG1682|consensus 99.7 3.2E-18 6.9E-23 147.5 6.8 151 1-210 134-284 (287)
108 cd06558 crotonase-like Crotona 99.7 7.9E-18 1.7E-22 149.6 9.5 94 1-109 102-195 (195)
109 KOG2305|consensus 99.7 4.3E-17 9.3E-22 143.3 8.3 141 218-358 1-143 (313)
110 KOG1683|consensus 99.6 8.1E-15 1.8E-19 137.8 10.2 129 231-359 1-129 (380)
111 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 6.7E-13 1.4E-17 114.2 6.4 105 222-338 1-106 (157)
112 PRK07417 arogenate dehydrogena 99.3 4E-12 8.7E-17 119.5 10.4 112 222-358 2-113 (279)
113 PF03446 NAD_binding_2: NAD bi 99.3 2.4E-12 5.2E-17 111.4 8.2 103 220-347 1-108 (163)
114 cd07020 Clp_protease_NfeD_1 No 99.3 3E-12 6.6E-17 113.3 7.6 80 1-82 70-165 (187)
115 COG0240 GpsA Glycerol-3-phosph 99.3 3E-12 6.5E-17 120.5 7.9 109 220-340 1-110 (329)
116 PRK12491 pyrroline-5-carboxyla 99.3 2.3E-11 5E-16 113.8 10.9 108 221-353 3-115 (272)
117 PTZ00082 L-lactate dehydrogena 99.3 1E-11 2.2E-16 118.8 8.4 127 219-357 5-153 (321)
118 PLN02688 pyrroline-5-carboxyla 99.3 5E-11 1.1E-15 111.2 12.2 108 221-355 1-114 (266)
119 PRK07679 pyrroline-5-carboxyla 99.3 4E-11 8.7E-16 112.7 11.2 115 219-358 2-122 (279)
120 PRK11880 pyrroline-5-carboxyla 99.2 5.7E-11 1.2E-15 110.8 11.0 112 220-358 2-117 (267)
121 cd01339 LDH-like_MDH L-lactate 99.2 1.9E-11 4E-16 116.2 7.8 122 223-356 1-139 (300)
122 PRK06223 malate dehydrogenase; 99.2 3.8E-11 8.2E-16 114.4 9.2 125 220-356 2-143 (307)
123 PRK11199 tyrA bifunctional cho 99.2 1.6E-10 3.5E-15 113.0 13.4 100 219-359 97-199 (374)
124 PTZ00117 malate dehydrogenase; 99.2 4.5E-11 9.7E-16 114.4 8.8 125 221-357 6-147 (319)
125 COG2084 MmsB 3-hydroxyisobutyr 99.2 7.3E-11 1.6E-15 110.0 9.1 96 221-339 1-99 (286)
126 PF03721 UDPG_MGDP_dh_N: UDP-g 99.2 5.8E-11 1.3E-15 104.8 7.9 108 221-336 1-121 (185)
127 PRK11559 garR tartronate semia 99.2 9.8E-11 2.1E-15 110.9 8.9 105 220-348 2-111 (296)
128 PF03807 F420_oxidored: NADP o 99.2 3.2E-11 6.9E-16 94.7 4.5 90 222-337 1-96 (96)
129 TIGR01505 tartro_sem_red 2-hyd 99.1 7.3E-11 1.6E-15 111.6 7.5 103 222-348 1-108 (291)
130 PRK15461 NADH-dependent gamma- 99.1 1.8E-10 4E-15 109.2 9.3 97 220-340 1-100 (296)
131 PRK06545 prephenate dehydrogen 99.1 2.4E-10 5.2E-15 111.3 10.0 116 221-358 1-120 (359)
132 PRK00094 gpsA NAD(P)H-dependen 99.1 1.7E-10 3.7E-15 110.5 8.7 109 220-340 1-110 (325)
133 PRK11064 wecC UDP-N-acetyl-D-m 99.1 5.4E-10 1.2E-14 110.7 12.5 108 218-336 1-120 (415)
134 PF10727 Rossmann-like: Rossma 99.1 2.2E-10 4.9E-15 94.5 7.9 115 220-358 10-127 (127)
135 TIGR01915 npdG NADPH-dependent 99.1 3.8E-10 8.2E-15 102.4 10.1 105 221-340 1-106 (219)
136 PLN02256 arogenate dehydrogena 99.1 3E-10 6.5E-15 107.9 9.8 114 218-358 34-152 (304)
137 PRK07502 cyclohexadienyl dehyd 99.1 5.1E-10 1.1E-14 106.7 11.5 118 218-359 4-126 (307)
138 COG0677 WecC UDP-N-acetyl-D-ma 99.1 6.3E-10 1.4E-14 106.2 11.6 114 221-339 10-132 (436)
139 PRK08655 prephenate dehydrogen 99.1 3.3E-10 7.1E-15 112.9 10.0 113 221-358 1-117 (437)
140 PRK08229 2-dehydropantoate 2-r 99.1 5.1E-10 1.1E-14 108.0 10.6 120 220-349 2-122 (341)
141 TIGR00872 gnd_rel 6-phosphoglu 99.1 9.6E-10 2.1E-14 104.4 12.2 96 222-340 2-98 (298)
142 PRK08507 prephenate dehydrogen 99.1 7E-10 1.5E-14 104.1 10.9 110 222-358 2-114 (275)
143 cd05297 GH4_alpha_glucosidase_ 99.1 3.6E-11 7.7E-16 119.4 1.7 125 222-359 2-145 (423)
144 TIGR03026 NDP-sugDHase nucleot 99.1 6.8E-10 1.5E-14 110.0 10.9 106 222-335 2-120 (411)
145 COG0345 ProC Pyrroline-5-carbo 99.1 9E-10 2E-14 101.8 10.9 103 220-348 1-108 (266)
146 COG0287 TyrA Prephenate dehydr 99.1 9E-10 1.9E-14 103.1 10.4 115 220-358 3-123 (279)
147 COG1004 Ugd Predicted UDP-gluc 99.1 6.3E-10 1.4E-14 106.5 9.4 110 221-339 1-123 (414)
148 TIGR01763 MalateDH_bact malate 99.1 5.3E-10 1.2E-14 106.3 8.8 123 221-356 2-142 (305)
149 TIGR03376 glycerol3P_DH glycer 99.0 2.8E-10 6E-15 109.6 6.9 108 222-341 1-122 (342)
150 PTZ00345 glycerol-3-phosphate 99.0 2E-10 4.3E-15 111.4 5.2 112 221-340 12-134 (365)
151 PRK07680 late competence prote 99.0 9.5E-10 2.1E-14 103.1 9.2 103 222-348 2-109 (273)
152 PTZ00142 6-phosphogluconate de 99.0 7.5E-10 1.6E-14 110.9 8.6 103 220-341 1-107 (470)
153 PRK15057 UDP-glucose 6-dehydro 99.0 7E-10 1.5E-14 108.8 8.2 106 222-335 2-117 (388)
154 PRK06928 pyrroline-5-carboxyla 99.0 2.1E-09 4.5E-14 101.0 10.6 106 220-349 1-112 (277)
155 PRK07634 pyrroline-5-carboxyla 99.0 2.9E-09 6.3E-14 97.9 11.1 113 219-357 3-121 (245)
156 PLN02350 phosphogluconate dehy 99.0 2.1E-09 4.5E-14 108.0 10.0 112 219-348 5-122 (493)
157 PRK12490 6-phosphogluconate de 99.0 3.1E-09 6.7E-14 101.0 9.9 101 222-347 2-108 (299)
158 cd00650 LDH_MDH_like NAD-depen 99.0 1.5E-09 3.2E-14 101.2 7.6 121 223-357 1-144 (263)
159 COG2085 Predicted dinucleotide 98.9 4E-09 8.7E-14 93.3 9.0 95 220-338 1-96 (211)
160 PRK12439 NAD(P)H-dependent gly 98.9 3.5E-09 7.6E-14 102.4 9.5 111 218-340 5-116 (341)
161 PRK14618 NAD(P)H-dependent gly 98.9 3.1E-09 6.7E-14 102.2 8.9 104 220-339 4-108 (328)
162 PRK06522 2-dehydropantoate 2-r 98.9 9.6E-09 2.1E-13 97.4 12.0 112 222-348 2-114 (304)
163 PRK15182 Vi polysaccharide bio 98.9 3.8E-09 8.1E-14 104.9 9.5 107 221-336 7-121 (425)
164 PRK08818 prephenate dehydrogen 98.9 4.1E-09 8.9E-14 102.3 9.5 98 221-358 5-110 (370)
165 PRK06476 pyrroline-5-carboxyla 98.9 5.7E-09 1.2E-13 96.9 9.9 106 222-353 2-111 (258)
166 PRK09599 6-phosphogluconate de 98.9 6E-09 1.3E-13 99.1 10.2 93 222-339 2-98 (301)
167 PF00056 Ldh_1_N: lactate/mala 98.9 1.1E-08 2.4E-13 86.3 10.0 121 221-355 1-141 (141)
168 TIGR01692 HIBADH 3-hydroxyisob 98.9 4.8E-09 1E-13 99.1 8.7 91 225-341 1-95 (288)
169 PLN02712 arogenate dehydrogena 98.9 9.3E-09 2E-13 107.3 11.3 114 218-358 367-485 (667)
170 PRK14619 NAD(P)H-dependent gly 98.9 3.1E-09 6.6E-14 101.4 6.9 81 221-340 5-87 (308)
171 PRK14620 NAD(P)H-dependent gly 98.9 7E-09 1.5E-13 99.7 9.3 107 222-340 2-111 (326)
172 TIGR00873 gnd 6-phosphoglucona 98.9 6.8E-09 1.5E-13 104.0 9.2 100 222-341 1-104 (467)
173 KOG0409|consensus 98.9 5.1E-09 1.1E-13 96.6 7.4 107 219-349 34-146 (327)
174 PLN02353 probable UDP-glucose 98.9 7.3E-09 1.6E-13 103.9 8.9 106 220-334 1-126 (473)
175 PRK15059 tartronate semialdehy 98.9 7.7E-09 1.7E-13 97.9 8.5 93 222-339 2-97 (292)
176 cd07014 S49_SppA Signal peptid 98.8 3E-09 6.5E-14 93.3 4.7 80 1-82 80-169 (177)
177 PRK14806 bifunctional cyclohex 98.8 2E-08 4.4E-13 106.7 11.5 116 219-358 2-123 (735)
178 PRK12557 H(2)-dependent methyl 98.8 2.7E-08 5.8E-13 96.0 11.1 108 231-358 31-142 (342)
179 PRK05479 ketol-acid reductoiso 98.8 1E-08 2.2E-13 97.9 8.1 110 220-355 17-127 (330)
180 PLN02712 arogenate dehydrogena 98.8 2.7E-08 5.8E-13 103.9 11.2 112 220-358 52-168 (667)
181 cd05291 HicDH_like L-2-hydroxy 98.8 1.6E-08 3.5E-13 96.4 8.7 122 221-356 1-141 (306)
182 PRK12921 2-dehydropantoate 2-r 98.8 4.7E-08 1E-12 92.8 11.9 119 221-354 1-121 (305)
183 TIGR00465 ilvC ketol-acid redu 98.8 2.1E-08 4.5E-13 95.6 9.0 108 221-354 4-112 (314)
184 cd05293 LDH_1 A subgroup of L- 98.8 3E-08 6.4E-13 94.6 8.9 122 221-356 4-144 (312)
185 PLN02602 lactate dehydrogenase 98.7 3.9E-08 8.5E-13 95.0 9.6 122 221-356 38-178 (350)
186 PRK06249 2-dehydropantoate 2-r 98.7 6E-08 1.3E-12 92.7 9.3 122 219-355 4-126 (313)
187 PRK12480 D-lactate dehydrogena 98.7 1.3E-07 2.9E-12 90.9 11.6 100 221-348 147-249 (330)
188 cd07016 S14_ClpP_1 Caseinolyti 98.7 3E-08 6.6E-13 85.4 6.2 77 1-79 67-160 (160)
189 cd05292 LDH_2 A subgroup of L- 98.7 4.7E-08 1E-12 93.2 8.0 120 222-356 2-140 (308)
190 PTZ00431 pyrroline carboxylate 98.7 6.4E-08 1.4E-12 90.1 8.8 104 221-357 4-115 (260)
191 cd00300 LDH_like L-lactate deh 98.7 4.7E-08 1E-12 92.9 7.5 120 223-356 1-139 (300)
192 PLN02858 fructose-bisphosphate 98.7 7.8E-08 1.7E-12 107.5 10.1 103 221-347 5-112 (1378)
193 cd05290 LDH_3 A subgroup of L- 98.7 5.9E-08 1.3E-12 92.3 7.8 122 222-356 1-143 (307)
194 COG0039 Mdh Malate/lactate deh 98.6 8.4E-08 1.8E-12 90.6 8.4 123 221-356 1-142 (313)
195 PRK00066 ldh L-lactate dehydro 98.6 7E-08 1.5E-12 92.3 7.9 121 221-356 7-146 (315)
196 TIGR01724 hmd_rel H2-forming N 98.6 2.7E-07 5.9E-12 86.7 11.3 93 231-344 31-124 (341)
197 KOG1495|consensus 98.6 2.4E-07 5.2E-12 84.3 9.2 124 219-356 19-161 (332)
198 PF02558 ApbA: Ketopantoate re 98.6 1.7E-07 3.7E-12 79.6 8.0 118 223-354 1-120 (151)
199 PRK05708 2-dehydropantoate 2-r 98.6 5.3E-07 1.1E-11 85.9 11.4 121 221-355 3-124 (305)
200 PRK15076 alpha-galactosidase; 98.5 3.8E-07 8.3E-12 90.7 10.2 123 220-356 1-168 (431)
201 PLN02858 fructose-bisphosphate 98.5 2.9E-07 6.3E-12 103.0 10.1 96 219-338 323-421 (1378)
202 TIGR02354 thiF_fam2 thiamine b 98.5 4E-07 8.8E-12 81.4 9.0 106 219-332 20-142 (200)
203 KOG2711|consensus 98.5 1.6E-07 3.4E-12 88.2 6.3 117 214-340 15-144 (372)
204 cd05294 LDH-like_MDH_nadp A la 98.5 3.5E-07 7.6E-12 87.3 7.1 123 221-356 1-145 (309)
205 TIGR01759 MalateDH-SF1 malate 98.5 7.4E-07 1.6E-11 85.4 9.2 122 221-356 4-154 (323)
206 COG1893 ApbA Ketopantoate redu 98.4 1.2E-06 2.6E-11 83.5 10.4 121 221-355 1-121 (307)
207 PRK05442 malate dehydrogenase; 98.4 5.6E-07 1.2E-11 86.3 8.1 123 220-356 4-155 (326)
208 PRK13403 ketol-acid reductoiso 98.4 8E-07 1.7E-11 84.1 8.1 86 221-333 17-104 (335)
209 COG1023 Gnd Predicted 6-phosph 98.4 1.2E-06 2.5E-11 78.7 8.6 93 221-338 1-97 (300)
210 PRK13243 glyoxylate reductase; 98.4 5.3E-07 1.2E-11 86.9 6.7 103 220-348 150-255 (333)
211 PLN00112 malate dehydrogenase 98.4 2.9E-06 6.3E-11 84.1 12.0 122 221-356 101-250 (444)
212 PF07991 IlvN: Acetohydroxy ac 98.4 6.3E-07 1.4E-11 76.3 5.8 94 220-340 4-99 (165)
213 PRK08605 D-lactate dehydrogena 98.4 7.1E-07 1.5E-11 86.0 6.8 99 221-347 147-250 (332)
214 cd01338 MDH_choloroplast_like 98.4 9.7E-07 2.1E-11 84.6 7.5 122 221-356 3-153 (322)
215 cd01337 MDH_glyoxysomal_mitoch 98.4 1.4E-06 3.1E-11 82.8 8.5 117 221-356 1-145 (310)
216 cd01065 NAD_bind_Shikimate_DH 98.3 1E-06 2.2E-11 75.0 6.7 117 220-357 19-139 (155)
217 TIGR01772 MDH_euk_gproteo mala 98.3 1.1E-06 2.4E-11 83.7 7.2 116 222-356 1-144 (312)
218 TIGR01757 Malate-DH_plant mala 98.3 5.1E-06 1.1E-10 81.2 11.7 122 221-356 45-194 (387)
219 TIGR01771 L-LDH-NAD L-lactate 98.3 1E-06 2.2E-11 83.6 6.1 118 225-356 1-137 (299)
220 PLN00106 malate dehydrogenase 98.3 2.1E-06 4.5E-11 82.2 8.1 117 221-356 19-163 (323)
221 PRK15469 ghrA bifunctional gly 98.3 3E-06 6.5E-11 80.9 9.1 103 220-348 136-241 (312)
222 PLN03139 formate dehydrogenase 98.3 2.4E-06 5.2E-11 83.6 8.2 105 220-348 199-306 (386)
223 PRK07574 formate dehydrogenase 98.3 3.1E-06 6.7E-11 82.8 9.0 104 221-348 193-299 (385)
224 PRK06436 glycerate dehydrogena 98.2 3E-06 6.4E-11 80.6 7.6 100 220-348 122-224 (303)
225 cd00704 MDH Malate dehydrogena 98.2 1.5E-06 3.3E-11 83.3 5.6 121 222-356 2-151 (323)
226 TIGR00705 SppA_67K signal pept 98.2 2E-06 4.4E-11 88.7 5.2 93 1-112 387-524 (584)
227 PTZ00325 malate dehydrogenase; 98.2 5.5E-06 1.2E-10 79.3 7.7 121 217-356 5-153 (321)
228 PF02153 PDH: Prephenate dehyd 98.1 5.3E-06 1.2E-10 77.1 6.5 100 235-358 1-104 (258)
229 TIGR01758 MDH_euk_cyt malate d 98.1 1.3E-05 2.7E-10 77.0 8.9 121 222-356 1-149 (324)
230 PF02826 2-Hacid_dh_C: D-isome 98.1 3.3E-06 7.1E-11 74.1 4.5 104 220-348 36-142 (178)
231 PRK09287 6-phosphogluconate de 98.1 7.1E-06 1.5E-10 82.2 7.2 91 231-341 1-95 (459)
232 PRK13302 putative L-aspartate 98.0 2.4E-05 5.3E-10 73.2 9.6 81 218-322 4-88 (271)
233 COG0111 SerA Phosphoglycerate 98.0 1E-05 2.2E-10 77.6 6.4 103 220-348 142-248 (324)
234 TIGR01327 PGDH D-3-phosphoglyc 98.0 1.3E-05 2.9E-10 81.9 7.3 103 221-348 139-244 (525)
235 PRK06444 prephenate dehydrogen 98.0 2.8E-05 6.1E-10 69.2 8.3 75 222-358 2-77 (197)
236 cd00394 Clp_protease_like Case 97.9 1.4E-05 2.9E-10 68.8 5.6 77 1-79 66-161 (161)
237 PRK13304 L-aspartate dehydroge 97.9 3.7E-05 8.1E-10 71.8 8.8 87 221-333 2-92 (265)
238 cd05197 GH4_glycoside_hydrolas 97.9 0.00011 2.3E-09 73.2 12.3 122 221-356 1-165 (425)
239 TIGR02853 spore_dpaA dipicolin 97.9 2.7E-05 5.9E-10 73.5 7.7 90 220-336 151-241 (287)
240 PLN02928 oxidoreductase family 97.9 1.8E-05 4E-10 76.7 6.4 115 221-348 160-277 (347)
241 PF02056 Glyco_hydro_4: Family 97.9 0.00015 3.2E-09 63.6 11.4 121 222-356 1-166 (183)
242 COG0362 Gnd 6-phosphogluconate 97.9 3.1E-05 6.7E-10 74.3 7.4 118 220-357 3-127 (473)
243 cd05213 NAD_bind_Glutamyl_tRNA 97.9 0.00031 6.8E-09 67.1 14.3 95 220-337 178-275 (311)
244 PF00670 AdoHcyase_NAD: S-aden 97.9 3.5E-05 7.7E-10 66.0 6.8 98 221-346 24-124 (162)
245 PRK13581 D-3-phosphoglycerate 97.9 2.7E-05 5.8E-10 79.7 7.0 102 221-348 141-245 (526)
246 PRK14194 bifunctional 5,10-met 97.9 3.5E-05 7.6E-10 72.7 6.9 91 193-335 140-231 (301)
247 PRK11790 D-3-phosphoglycerate 97.8 2.9E-05 6.3E-10 76.9 6.4 101 220-348 151-254 (409)
248 PRK00257 erythronate-4-phospha 97.8 1.9E-05 4E-10 77.3 4.9 99 221-348 117-222 (381)
249 PRK08410 2-hydroxyacid dehydro 97.8 3.3E-05 7.2E-10 73.8 5.1 100 220-348 145-247 (311)
250 PRK08306 dipicolinate synthase 97.7 0.00016 3.4E-09 68.7 9.5 89 221-336 153-242 (296)
251 cd01336 MDH_cytoplasmic_cytoso 97.7 7E-05 1.5E-09 72.0 7.1 121 221-355 3-151 (325)
252 COG0569 TrkA K+ transport syst 97.7 0.00023 4.9E-09 64.9 9.8 95 221-336 1-102 (225)
253 PRK06141 ornithine cyclodeamin 97.7 7.7E-05 1.7E-09 71.4 7.0 94 220-337 125-221 (314)
254 TIGR00745 apbA_panE 2-dehydrop 97.7 0.00016 3.4E-09 68.0 9.0 112 230-355 1-113 (293)
255 cd01075 NAD_bind_Leu_Phe_Val_D 97.7 0.00055 1.2E-08 61.2 11.9 43 218-260 26-68 (200)
256 cd07021 Clp_protease_NfeD_like 97.7 8.3E-05 1.8E-09 65.2 6.3 76 1-82 67-171 (178)
257 cd05296 GH4_P_beta_glucosidase 97.7 0.00024 5.1E-09 70.6 10.1 121 221-356 1-165 (419)
258 PRK06932 glycerate dehydrogena 97.7 7.1E-05 1.5E-09 71.6 6.2 98 221-348 148-248 (314)
259 PRK06487 glycerate dehydrogena 97.7 5.7E-05 1.2E-09 72.4 5.5 97 221-348 149-248 (317)
260 PRK15438 erythronate-4-phospha 97.7 3.9E-05 8.4E-10 74.9 4.3 99 221-348 117-222 (378)
261 PRK05086 malate dehydrogenase; 97.7 9.5E-05 2.1E-09 70.7 6.7 118 221-356 1-146 (312)
262 PRK15409 bifunctional glyoxyla 97.7 8E-05 1.7E-09 71.5 6.2 103 220-348 145-251 (323)
263 PLN02306 hydroxypyruvate reduc 97.6 0.00012 2.5E-09 72.0 6.8 118 220-348 165-287 (386)
264 COG4007 Predicted dehydrogenas 97.6 0.00046 9.9E-09 62.8 9.7 98 232-350 33-135 (340)
265 COG1712 Predicted dinucleotide 97.6 0.0003 6.6E-09 62.9 8.4 89 222-336 2-94 (255)
266 TIGR00112 proC pyrroline-5-car 97.6 0.00023 5.1E-09 65.6 8.1 82 244-350 10-92 (245)
267 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00036 7.8E-09 68.9 9.8 86 221-335 203-289 (413)
268 PF01488 Shikimate_DH: Shikima 97.6 7.5E-05 1.6E-09 62.4 4.3 76 219-312 11-88 (135)
269 cd05298 GH4_GlvA_pagL_like Gly 97.6 0.00085 1.8E-08 67.0 12.2 122 221-356 1-165 (437)
270 TIGR02371 ala_DH_arch alanine 97.6 0.00019 4E-09 69.1 7.3 94 220-337 128-224 (325)
271 KOG0069|consensus 97.6 0.00023 5E-09 67.9 7.7 105 218-347 160-267 (336)
272 COG1052 LdhA Lactate dehydroge 97.5 0.00018 4E-09 68.9 6.9 103 220-348 146-251 (324)
273 PRK05225 ketol-acid reductoiso 97.5 8.7E-05 1.9E-09 73.2 4.6 86 221-332 37-128 (487)
274 TIGR00936 ahcY adenosylhomocys 97.5 0.00033 7.2E-09 69.0 8.5 97 220-345 195-295 (406)
275 PRK14188 bifunctional 5,10-met 97.5 0.00025 5.4E-09 67.0 7.2 93 192-337 138-232 (296)
276 PF13766 ECH_C: 2-enoyl-CoA Hy 97.5 0.00019 4.1E-09 58.6 5.3 71 140-210 28-100 (118)
277 PRK05476 S-adenosyl-L-homocyst 97.5 0.00046 9.9E-09 68.4 8.6 87 220-336 212-300 (425)
278 cd01487 E1_ThiF_like E1_ThiF_l 97.4 0.00037 8.1E-09 60.9 6.9 95 222-324 1-112 (174)
279 COG1748 LYS9 Saccharopine dehy 97.4 0.00026 5.5E-09 69.1 6.2 96 220-336 1-100 (389)
280 smart00859 Semialdhyde_dh Semi 97.4 0.0006 1.3E-08 55.7 7.5 99 222-340 1-104 (122)
281 PRK08618 ornithine cyclodeamin 97.4 0.00061 1.3E-08 65.5 8.6 93 220-336 127-222 (325)
282 PRK12549 shikimate 5-dehydroge 97.4 0.00038 8.2E-09 65.7 7.0 74 221-310 128-203 (284)
283 PF01408 GFO_IDH_MocA: Oxidore 97.4 0.00094 2E-08 54.0 8.4 96 222-344 2-103 (120)
284 PRK04148 hypothetical protein; 97.4 0.00062 1.4E-08 56.6 7.3 99 221-340 18-116 (134)
285 PTZ00075 Adenosylhomocysteinas 97.4 0.00045 9.6E-09 69.0 7.2 88 220-337 254-343 (476)
286 KOG2380|consensus 97.4 0.0011 2.4E-08 62.6 9.4 111 221-358 53-168 (480)
287 COG0059 IlvC Ketol-acid reduct 97.3 0.00054 1.2E-08 63.9 6.9 88 220-332 18-106 (338)
288 cd07022 S49_Sppa_36K_type Sign 97.3 0.0004 8.6E-09 62.7 6.1 30 1-32 82-111 (214)
289 PRK13301 putative L-aspartate 97.3 0.00089 1.9E-08 61.9 8.3 87 221-335 3-95 (267)
290 TIGR00507 aroE shikimate 5-deh 97.3 0.00038 8.2E-09 65.1 6.1 98 220-337 117-216 (270)
291 PLN02494 adenosylhomocysteinas 97.3 0.00054 1.2E-08 68.3 7.2 97 221-346 255-355 (477)
292 KOG2666|consensus 97.3 0.00034 7.3E-09 65.4 5.3 112 220-341 1-132 (481)
293 PRK07340 ornithine cyclodeamin 97.3 0.00073 1.6E-08 64.4 7.7 92 220-337 125-219 (304)
294 cd07019 S49_SppA_1 Signal pept 97.3 0.00018 4E-09 64.8 3.4 80 1-82 79-203 (211)
295 TIGR02992 ectoine_eutC ectoine 97.3 0.0009 1.9E-08 64.4 7.8 95 221-338 130-227 (326)
296 PRK08644 thiamine biosynthesis 97.3 0.00096 2.1E-08 60.2 7.6 32 221-252 29-61 (212)
297 PF01113 DapB_N: Dihydrodipico 97.2 0.0012 2.7E-08 54.2 7.5 102 221-343 1-106 (124)
298 PRK14179 bifunctional 5,10-met 97.2 0.00065 1.4E-08 63.7 6.5 93 192-337 138-232 (284)
299 PRK00277 clpP ATP-dependent Cl 97.2 0.00055 1.2E-08 61.2 5.3 73 1-82 98-196 (200)
300 TIGR01035 hemA glutamyl-tRNA r 97.2 0.00074 1.6E-08 67.2 6.8 95 221-336 181-278 (417)
301 PRK08291 ectoine utilization p 97.2 0.001 2.2E-08 64.2 7.5 76 220-312 132-210 (330)
302 TIGR00706 SppA_dom signal pept 97.2 0.0011 2.3E-08 59.7 7.1 79 1-82 70-195 (207)
303 cd01078 NAD_bind_H4MPT_DH NADP 97.2 0.00064 1.4E-08 60.2 5.7 74 221-311 29-109 (194)
304 KOG3124|consensus 97.2 0.00089 1.9E-08 61.0 6.2 109 221-354 1-114 (267)
305 PRK00258 aroE shikimate 5-dehy 97.1 0.00089 1.9E-08 62.9 6.2 97 221-336 124-222 (278)
306 PRK06046 alanine dehydrogenase 97.1 0.0012 2.5E-08 63.6 7.1 94 220-337 129-225 (326)
307 PF01118 Semialdhyde_dh: Semia 97.1 0.00082 1.8E-08 55.0 5.0 98 222-340 1-102 (121)
308 cd07015 Clp_protease_NfeD Nodu 97.1 0.0016 3.5E-08 56.7 7.0 79 2-82 71-165 (172)
309 PRK13940 glutamyl-tRNA reducta 97.1 0.0046 1E-07 61.4 11.1 73 221-313 182-256 (414)
310 COG1486 CelF Alpha-galactosida 97.1 0.0038 8.1E-08 61.6 10.3 124 219-356 2-168 (442)
311 PRK06407 ornithine cyclodeamin 97.1 0.0017 3.7E-08 61.8 7.6 94 220-336 117-213 (301)
312 COG2423 Predicted ornithine cy 97.1 0.0022 4.8E-08 61.5 8.2 97 219-338 129-228 (330)
313 PRK09310 aroDE bifunctional 3- 97.1 0.0015 3.3E-08 66.0 7.5 72 220-312 332-403 (477)
314 PLN00203 glutamyl-tRNA reducta 97.0 0.0045 9.7E-08 63.1 10.3 99 220-336 266-370 (519)
315 PRK00045 hemA glutamyl-tRNA re 97.0 0.001 2.2E-08 66.4 5.6 95 221-336 183-281 (423)
316 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0027 5.9E-08 55.1 7.3 74 220-337 44-118 (168)
317 TIGR00518 alaDH alanine dehydr 97.0 0.0028 6.1E-08 62.0 8.2 99 219-334 166-266 (370)
318 PRK06823 ornithine cyclodeamin 97.0 0.0032 6.8E-08 60.3 8.3 95 219-337 127-224 (315)
319 PRK00048 dihydrodipicolinate r 96.9 0.0028 6E-08 58.9 7.2 94 221-343 2-99 (257)
320 PRK09496 trkA potassium transp 96.8 0.019 4E-07 57.5 13.1 98 219-333 230-329 (453)
321 PRK13303 L-aspartate dehydroge 96.8 0.0035 7.6E-08 58.5 7.0 79 220-322 1-82 (265)
322 PRK09496 trkA potassium transp 96.8 0.008 1.7E-07 60.2 10.1 94 221-332 1-97 (453)
323 PF13460 NAD_binding_10: NADH( 96.7 0.0032 7E-08 54.6 6.0 90 223-332 1-95 (183)
324 PRK07589 ornithine cyclodeamin 96.7 0.0054 1.2E-07 59.4 7.9 96 219-336 128-226 (346)
325 PRK14175 bifunctional 5,10-met 96.7 0.0051 1.1E-07 57.8 7.0 93 193-337 139-232 (286)
326 cd07023 S49_Sppa_N_C Signal pe 96.7 0.0036 7.8E-08 56.2 5.9 80 1-82 75-200 (208)
327 TIGR01809 Shik-DH-AROM shikima 96.7 0.0053 1.1E-07 57.8 7.3 75 221-311 126-202 (282)
328 PRK12553 ATP-dependent Clp pro 96.7 0.0041 9E-08 55.9 6.2 79 1-82 102-202 (207)
329 COG0373 HemA Glutamyl-tRNA red 96.6 0.018 3.8E-07 56.8 10.5 93 221-335 179-274 (414)
330 PRK10669 putative cation:proto 96.6 0.012 2.6E-07 60.8 9.9 96 221-334 418-515 (558)
331 PF02254 TrkA_N: TrkA-N domain 96.6 0.025 5.3E-07 45.4 9.7 95 223-335 1-97 (116)
332 PRK03659 glutathione-regulated 96.6 0.012 2.6E-07 61.4 9.8 98 221-336 401-500 (601)
333 PF03059 NAS: Nicotianamine sy 96.5 0.011 2.3E-07 55.4 8.2 98 221-333 122-228 (276)
334 cd05191 NAD_bind_amino_acid_DH 96.5 0.013 2.8E-07 44.8 7.4 33 219-251 22-55 (86)
335 cd07013 S14_ClpP Caseinolytic 96.5 0.007 1.5E-07 52.2 6.3 77 1-79 67-162 (162)
336 PRK12475 thiamine/molybdopteri 96.5 0.011 2.4E-07 57.1 8.3 33 221-253 25-58 (338)
337 PRK09424 pntA NAD(P) transhydr 96.5 0.0057 1.2E-07 62.1 6.4 42 220-261 165-206 (509)
338 TIGR02356 adenyl_thiF thiazole 96.4 0.0081 1.8E-07 53.7 6.7 33 221-253 22-55 (202)
339 COG0673 MviM Predicted dehydro 96.4 0.0095 2E-07 57.2 7.4 74 218-313 1-81 (342)
340 PF02423 OCD_Mu_crystall: Orni 96.4 0.0032 7E-08 60.2 4.1 95 221-337 129-226 (313)
341 COG2910 Putative NADH-flavin r 96.4 0.0066 1.4E-07 52.9 5.5 38 221-258 1-39 (211)
342 TIGR00561 pntA NAD(P) transhyd 96.4 0.0086 1.9E-07 60.7 7.3 108 221-335 165-284 (511)
343 TIGR01921 DAP-DH diaminopimela 96.4 0.0067 1.5E-07 58.0 6.0 67 220-312 3-73 (324)
344 PRK02318 mannitol-1-phosphate 96.3 0.0047 1E-07 60.7 5.0 41 221-261 1-42 (381)
345 PRK14512 ATP-dependent Clp pro 96.3 0.012 2.6E-07 52.4 7.0 81 1-83 90-189 (197)
346 PF00070 Pyr_redox: Pyridine n 96.3 0.0075 1.6E-07 45.3 4.7 35 222-256 1-35 (80)
347 cd05295 MDH_like Malate dehydr 96.3 0.029 6.3E-07 56.1 10.0 122 221-356 124-275 (452)
348 PLN02819 lysine-ketoglutarate 96.2 0.025 5.5E-07 61.9 10.2 84 217-321 566-668 (1042)
349 COG0169 AroE Shikimate 5-dehyd 96.2 0.017 3.6E-07 54.4 7.7 98 221-336 127-227 (283)
350 PRK14189 bifunctional 5,10-met 96.2 0.01 2.2E-07 55.8 6.1 93 193-337 139-232 (285)
351 PRK06719 precorrin-2 dehydroge 96.2 0.019 4E-07 49.3 7.3 32 221-252 14-45 (157)
352 PRK03562 glutathione-regulated 96.2 0.054 1.2E-06 56.7 11.9 97 220-334 400-498 (621)
353 PRK06199 ornithine cyclodeamin 96.2 0.013 2.8E-07 57.6 6.9 76 219-309 154-233 (379)
354 TIGR00036 dapB dihydrodipicoli 96.1 0.018 3.9E-07 53.8 7.5 101 221-343 2-107 (266)
355 PRK00436 argC N-acetyl-gamma-g 96.1 0.016 3.6E-07 56.1 7.3 98 220-340 2-104 (343)
356 CHL00028 clpP ATP-dependent Cl 96.1 0.014 2.9E-07 52.2 6.2 80 1-82 97-196 (200)
357 PRK06718 precorrin-2 dehydroge 96.1 0.029 6.2E-07 50.2 8.2 33 221-253 11-43 (202)
358 PRK12409 D-amino acid dehydrog 96.1 0.0058 1.2E-07 60.4 4.0 34 220-253 1-34 (410)
359 PF13380 CoA_binding_2: CoA bi 96.1 0.016 3.4E-07 47.1 5.9 80 221-332 1-85 (116)
360 TIGR00493 clpP ATP-dependent C 96.1 0.02 4.4E-07 50.7 7.1 79 1-81 93-190 (191)
361 PF03435 Saccharop_dh: Sacchar 96.0 0.011 2.4E-07 58.0 5.9 39 223-261 1-41 (386)
362 COG0686 Ald Alanine dehydrogen 96.0 0.0087 1.9E-07 56.3 4.7 111 202-334 148-267 (371)
363 PRK07688 thiamine/molybdopteri 96.0 0.026 5.7E-07 54.6 8.2 33 221-253 25-58 (339)
364 KOG2653|consensus 96.0 0.019 4E-07 54.9 6.7 98 219-336 5-106 (487)
365 cd05311 NAD_bind_2_malic_enz N 96.0 0.021 4.5E-07 52.0 6.9 32 221-252 26-60 (226)
366 PRK14106 murD UDP-N-acetylmura 95.9 0.071 1.5E-06 53.4 11.2 34 220-253 5-38 (450)
367 PRK04207 glyceraldehyde-3-phos 95.9 0.025 5.4E-07 54.8 7.6 106 220-336 1-110 (341)
368 PRK12319 acetyl-CoA carboxylas 95.9 0.042 9.2E-07 50.9 8.7 96 3-114 147-242 (256)
369 PRK14192 bifunctional 5,10-met 95.9 0.02 4.3E-07 53.9 6.6 91 193-335 140-231 (283)
370 PRK14027 quinate/shikimate deh 95.8 0.016 3.4E-07 54.7 5.5 43 221-263 128-171 (283)
371 CHL00198 accA acetyl-CoA carbo 95.8 0.055 1.2E-06 51.5 9.1 100 3-114 203-302 (322)
372 PRK14514 ATP-dependent Clp pro 95.8 0.03 6.5E-07 50.7 6.9 80 1-82 121-219 (221)
373 PRK01438 murD UDP-N-acetylmura 95.7 0.11 2.3E-06 52.7 11.7 37 218-254 14-50 (480)
374 cd07017 S14_ClpP_2 Caseinolyti 95.7 0.0089 1.9E-07 52.0 3.3 77 1-79 76-171 (171)
375 PRK12548 shikimate 5-dehydroge 95.7 0.017 3.8E-07 54.5 5.5 39 221-259 127-169 (289)
376 PRK12829 short chain dehydroge 95.7 0.076 1.6E-06 48.6 9.6 40 221-260 12-52 (264)
377 COG4091 Predicted homoserine d 95.7 0.064 1.4E-06 51.3 9.0 88 221-308 18-110 (438)
378 PLN02968 Probable N-acetyl-gam 95.7 0.017 3.6E-07 56.8 5.3 99 219-340 37-139 (381)
379 cd07018 S49_SppA_67K_type Sign 95.6 0.029 6.4E-07 50.9 6.5 28 3-32 88-115 (222)
380 cd01483 E1_enzyme_family Super 95.6 0.047 1E-06 45.7 7.2 32 222-253 1-33 (143)
381 PLN03230 acetyl-coenzyme A car 95.6 0.077 1.7E-06 52.0 9.4 98 5-114 272-369 (431)
382 TIGR01470 cysG_Nterm siroheme 95.6 0.032 7E-07 50.0 6.4 34 221-254 10-43 (205)
383 PRK07236 hypothetical protein; 95.5 0.015 3.3E-07 57.0 4.5 39 216-254 2-40 (386)
384 PLN00135 malate dehydrogenase 95.5 0.072 1.6E-06 50.8 8.8 100 243-356 13-132 (309)
385 PRK12550 shikimate 5-dehydroge 95.5 0.043 9.2E-07 51.5 7.1 40 221-260 123-163 (272)
386 PRK14513 ATP-dependent Clp pro 95.4 0.048 1E-06 48.7 6.9 78 1-82 94-192 (201)
387 TIGR01850 argC N-acetyl-gamma- 95.4 0.034 7.5E-07 53.9 6.4 100 221-341 1-105 (346)
388 PRK06153 hypothetical protein; 95.4 0.029 6.4E-07 54.7 5.7 32 221-252 177-209 (393)
389 COG0300 DltE Short-chain dehyd 95.3 0.22 4.8E-06 46.3 11.2 48 217-264 3-51 (265)
390 PRK05868 hypothetical protein; 95.3 0.016 3.5E-07 56.7 3.7 36 220-255 1-36 (372)
391 KOG1683|consensus 95.3 0.027 5.8E-07 54.1 4.9 166 7-230 165-333 (380)
392 PRK08300 acetaldehyde dehydrog 95.3 0.081 1.8E-06 50.2 8.2 89 221-336 5-102 (302)
393 COG1064 AdhP Zn-dependent alco 95.3 0.079 1.7E-06 51.0 8.2 41 221-261 168-208 (339)
394 PRK10792 bifunctional 5,10-met 95.2 0.046 9.9E-07 51.4 6.3 91 193-335 140-231 (285)
395 PRK12828 short chain dehydroge 95.2 0.045 9.7E-07 49.1 6.2 40 221-260 8-48 (239)
396 TIGR00513 accA acetyl-CoA carb 95.2 0.12 2.5E-06 49.3 9.0 99 4-114 201-299 (316)
397 PF13450 NAD_binding_8: NAD(P) 95.2 0.02 4.4E-07 41.7 3.2 30 225-254 1-30 (68)
398 PRK12749 quinate/shikimate deh 95.2 0.066 1.4E-06 50.6 7.5 34 221-254 125-159 (288)
399 cd01079 NAD_bind_m-THF_DH NAD 95.2 0.049 1.1E-06 48.2 6.1 116 193-339 34-160 (197)
400 PRK14191 bifunctional 5,10-met 95.2 0.054 1.2E-06 50.9 6.6 92 193-336 138-230 (285)
401 PF13241 NAD_binding_7: Putati 95.0 0.07 1.5E-06 42.2 5.9 33 221-253 8-40 (103)
402 PF02882 THF_DHG_CYH_C: Tetrah 95.0 0.06 1.3E-06 46.3 5.9 94 193-338 17-111 (160)
403 PLN03229 acetyl-coenzyme A car 95.0 0.13 2.9E-06 53.7 9.3 69 3-83 291-359 (762)
404 cd05212 NAD_bind_m-THF_DH_Cycl 95.0 0.073 1.6E-06 44.8 6.2 92 195-338 11-103 (140)
405 PRK06194 hypothetical protein; 94.9 0.21 4.6E-06 46.4 10.1 44 219-262 5-49 (287)
406 PRK12551 ATP-dependent Clp pro 94.9 0.066 1.4E-06 47.6 6.3 80 1-82 92-190 (196)
407 TIGR03215 ac_ald_DH_ac acetald 94.9 0.085 1.9E-06 49.7 7.3 34 222-255 3-38 (285)
408 PRK09186 flagellin modificatio 94.9 0.37 8E-06 43.8 11.4 41 221-261 5-46 (256)
409 PRK05597 molybdopterin biosynt 94.9 0.07 1.5E-06 52.0 6.8 33 221-253 29-62 (355)
410 PF01494 FAD_binding_3: FAD bi 94.9 0.023 5.1E-07 54.0 3.5 34 222-255 3-36 (356)
411 TIGR03736 PRTRC_ThiF PRTRC sys 94.9 0.081 1.8E-06 48.7 6.8 33 221-253 12-55 (244)
412 PRK00683 murD UDP-N-acetylmura 94.9 0.025 5.5E-07 56.2 3.8 38 218-255 1-38 (418)
413 cd00757 ThiF_MoeB_HesA_family 94.8 0.055 1.2E-06 49.2 5.7 33 221-253 22-55 (228)
414 PRK00421 murC UDP-N-acetylmura 94.8 0.16 3.5E-06 51.2 9.5 36 219-254 6-42 (461)
415 PF01266 DAO: FAD dependent ox 94.8 0.032 7E-07 53.1 4.3 31 222-252 1-31 (358)
416 PRK00711 D-amino acid dehydrog 94.8 0.031 6.7E-07 55.2 4.2 33 222-254 2-34 (416)
417 PRK14178 bifunctional 5,10-met 94.8 0.1 2.2E-06 49.0 7.2 93 193-337 133-226 (279)
418 PRK14874 aspartate-semialdehyd 94.8 0.031 6.8E-07 54.0 4.0 92 220-338 1-97 (334)
419 cd01076 NAD_bind_1_Glu_DH NAD( 94.8 0.081 1.8E-06 48.2 6.5 33 219-251 30-63 (227)
420 PLN03075 nicotianamine synthas 94.8 0.21 4.5E-06 47.3 9.4 102 219-335 123-233 (296)
421 PRK05653 fabG 3-ketoacyl-(acyl 94.7 0.52 1.1E-05 42.2 11.8 42 218-259 3-45 (246)
422 PRK05724 acetyl-CoA carboxylas 94.7 0.19 4.2E-06 47.9 9.1 99 4-114 201-299 (319)
423 PRK08762 molybdopterin biosynt 94.7 0.077 1.7E-06 52.1 6.6 32 221-252 136-168 (376)
424 PF00574 CLP_protease: Clp pro 94.7 0.012 2.5E-07 51.7 0.7 80 1-82 83-181 (182)
425 cd05211 NAD_bind_Glu_Leu_Phe_V 94.6 0.085 1.8E-06 47.7 6.3 35 219-253 22-57 (217)
426 PRK13394 3-hydroxybutyrate deh 94.6 0.56 1.2E-05 42.7 11.9 45 218-262 5-50 (262)
427 PRK06057 short chain dehydroge 94.6 0.079 1.7E-06 48.5 6.2 44 218-261 5-49 (255)
428 PLN00016 RNA-binding protein; 94.6 0.11 2.4E-06 50.8 7.6 37 219-255 51-92 (378)
429 PRK01710 murD UDP-N-acetylmura 94.6 0.18 3.8E-06 50.9 9.2 34 221-254 15-48 (458)
430 PRK05600 thiamine biosynthesis 94.6 0.081 1.8E-06 51.8 6.5 33 221-253 42-75 (370)
431 PRK06847 hypothetical protein; 94.6 0.034 7.3E-07 54.0 3.9 35 220-254 4-38 (375)
432 PRK11579 putative oxidoreducta 94.6 0.091 2E-06 50.9 6.8 67 221-312 5-77 (346)
433 PRK05854 short chain dehydroge 94.6 0.54 1.2E-05 44.7 12.0 49 215-263 9-58 (313)
434 PRK08163 salicylate hydroxylas 94.6 0.035 7.6E-07 54.4 4.0 34 221-254 5-38 (396)
435 COG0499 SAM1 S-adenosylhomocys 94.6 0.11 2.3E-06 50.0 6.9 86 221-334 210-295 (420)
436 PRK09414 glutamate dehydrogena 94.6 0.22 4.7E-06 49.9 9.5 80 221-312 233-324 (445)
437 PRK12429 3-hydroxybutyrate deh 94.5 0.59 1.3E-05 42.4 11.8 42 220-261 4-46 (258)
438 PRK00141 murD UDP-N-acetylmura 94.5 0.089 1.9E-06 53.3 6.8 40 216-255 11-50 (473)
439 PRK06753 hypothetical protein; 94.5 0.035 7.6E-07 53.9 3.8 34 221-254 1-34 (373)
440 PRK14176 bifunctional 5,10-met 94.5 0.11 2.4E-06 48.9 6.8 93 192-336 144-237 (287)
441 PRK06270 homoserine dehydrogen 94.5 0.083 1.8E-06 51.2 6.3 22 221-242 3-24 (341)
442 TIGR02355 moeB molybdopterin s 94.5 0.078 1.7E-06 48.7 5.8 35 221-255 25-60 (240)
443 PRK08849 2-octaprenyl-3-methyl 94.5 0.04 8.6E-07 54.0 4.0 33 221-253 4-36 (384)
444 PF00899 ThiF: ThiF family; I 94.5 0.044 9.6E-07 45.5 3.8 33 221-253 3-36 (135)
445 PRK07231 fabG 3-ketoacyl-(acyl 94.4 0.68 1.5E-05 41.8 11.9 40 221-260 6-46 (251)
446 PRK07326 short chain dehydroge 94.4 0.79 1.7E-05 41.1 12.3 41 221-261 7-48 (237)
447 PRK03369 murD UDP-N-acetylmura 94.4 0.18 4E-06 51.2 8.8 35 221-255 13-47 (488)
448 COG1063 Tdh Threonine dehydrog 94.4 0.27 5.9E-06 47.7 9.7 40 222-261 171-211 (350)
449 PRK11259 solA N-methyltryptoph 94.4 0.042 9E-07 53.4 4.0 33 221-253 4-36 (376)
450 PRK07890 short chain dehydroge 94.4 0.1 2.2E-06 47.6 6.4 43 221-263 6-49 (258)
451 PRK07832 short chain dehydroge 94.3 0.63 1.4E-05 43.0 11.7 40 221-260 1-41 (272)
452 TIGR01851 argC_other N-acetyl- 94.3 0.11 2.3E-06 49.5 6.4 81 221-338 2-83 (310)
453 COG0665 DadA Glycine/D-amino a 94.3 0.048 1E-06 53.1 4.3 36 219-254 3-38 (387)
454 PRK06138 short chain dehydroge 94.3 0.89 1.9E-05 41.1 12.5 39 221-259 6-45 (252)
455 PRK05786 fabG 3-ketoacyl-(acyl 94.3 0.24 5.1E-06 44.6 8.5 41 221-261 6-47 (238)
456 PRK05866 short chain dehydroge 94.3 0.65 1.4E-05 43.7 11.8 41 221-261 41-82 (293)
457 PRK07454 short chain dehydroge 94.3 0.77 1.7E-05 41.4 11.9 42 219-260 5-47 (241)
458 TIGR01377 soxA_mon sarcosine o 94.3 0.04 8.7E-07 53.6 3.6 31 222-252 2-32 (380)
459 PRK07523 gluconate 5-dehydroge 94.3 0.66 1.4E-05 42.3 11.5 41 221-261 11-52 (255)
460 PLN03209 translocon at the inn 94.3 0.24 5.1E-06 51.1 9.2 42 221-262 81-123 (576)
461 COG0740 ClpP Protease subunit 94.2 0.055 1.2E-06 48.0 4.0 74 2-82 95-192 (200)
462 PRK07814 short chain dehydroge 94.2 0.75 1.6E-05 42.2 11.9 43 219-261 9-52 (263)
463 PRK02472 murD UDP-N-acetylmura 94.2 0.22 4.7E-06 49.9 8.8 35 220-254 5-39 (447)
464 KOG0068|consensus 94.2 0.12 2.6E-06 49.3 6.3 94 218-337 144-238 (406)
465 PRK06475 salicylate hydroxylas 94.2 0.039 8.5E-07 54.4 3.4 34 221-254 3-36 (400)
466 PRK08223 hypothetical protein; 94.2 0.063 1.4E-06 50.5 4.5 34 221-254 28-62 (287)
467 COG0654 UbiH 2-polyprenyl-6-me 94.1 0.049 1.1E-06 53.5 4.0 34 220-253 2-35 (387)
468 PRK06196 oxidoreductase; Provi 94.1 0.18 4E-06 47.8 7.7 44 219-262 25-69 (315)
469 cd00755 YgdL_like Family of ac 94.1 0.21 4.6E-06 45.6 7.7 33 221-253 12-45 (231)
470 cd01486 Apg7 Apg7 is an E1-lik 94.1 0.052 1.1E-06 51.3 3.8 32 222-253 1-33 (307)
471 COG0002 ArgC Acetylglutamate s 94.1 0.17 3.7E-06 48.5 7.3 100 220-340 2-106 (349)
472 PRK05732 2-octaprenyl-6-methox 94.1 0.052 1.1E-06 53.1 4.0 35 218-252 1-38 (395)
473 PRK08643 acetoin reductase; Va 94.1 0.98 2.1E-05 41.1 12.2 41 221-261 3-44 (256)
474 PRK06617 2-octaprenyl-6-methox 94.1 0.048 1E-06 53.2 3.7 33 220-252 1-33 (374)
475 PF12847 Methyltransf_18: Meth 94.0 0.36 7.9E-06 37.9 8.2 97 221-333 3-109 (112)
476 PRK07588 hypothetical protein; 94.0 0.048 1E-06 53.4 3.6 34 221-254 1-34 (391)
477 PRK09072 short chain dehydroge 94.0 0.81 1.8E-05 41.9 11.7 40 221-260 6-46 (263)
478 PRK14183 bifunctional 5,10-met 94.0 0.11 2.5E-06 48.6 5.9 93 192-336 137-230 (281)
479 PRK06949 short chain dehydroge 94.0 0.98 2.1E-05 41.0 12.1 44 218-261 7-51 (258)
480 PRK08340 glucose-1-dehydrogena 94.0 0.8 1.7E-05 41.9 11.5 42 222-263 2-44 (259)
481 PRK08013 oxidoreductase; Provi 94.0 0.049 1.1E-06 53.7 3.6 34 221-254 4-37 (400)
482 PRK07102 short chain dehydroge 93.9 0.13 2.9E-06 46.5 6.2 42 220-261 1-43 (243)
483 PRK06197 short chain dehydroge 93.9 0.85 1.9E-05 43.0 11.9 46 216-261 12-58 (306)
484 PRK14982 acyl-ACP reductase; P 93.9 0.09 2E-06 50.8 5.1 41 220-260 155-198 (340)
485 PRK07109 short chain dehydroge 93.9 0.88 1.9E-05 43.8 12.1 44 218-261 6-50 (334)
486 PRK08267 short chain dehydroge 93.9 0.13 2.8E-06 47.2 6.0 42 220-261 1-43 (260)
487 PRK07074 short chain dehydroge 93.9 0.12 2.7E-06 47.2 5.9 41 221-261 3-44 (257)
488 PLN02985 squalene monooxygenas 93.9 0.087 1.9E-06 54.0 5.2 35 219-253 42-76 (514)
489 PRK07831 short chain dehydroge 93.8 1.2 2.6E-05 40.7 12.5 46 218-263 15-62 (262)
490 PRK05867 short chain dehydroge 93.8 0.87 1.9E-05 41.4 11.4 41 221-261 10-51 (253)
491 COG1648 CysG Siroheme synthase 93.8 0.38 8.3E-06 43.3 8.7 80 221-320 13-92 (210)
492 PRK08945 putative oxoacyl-(acy 93.8 1.1 2.3E-05 40.7 11.9 43 219-261 11-54 (247)
493 PRK07825 short chain dehydroge 93.8 0.18 3.8E-06 46.6 6.8 42 220-261 5-47 (273)
494 PRK08213 gluconate 5-dehydroge 93.8 0.98 2.1E-05 41.2 11.6 42 220-261 12-54 (259)
495 PRK07774 short chain dehydroge 93.7 1 2.3E-05 40.6 11.7 40 221-260 7-47 (250)
496 PRK06180 short chain dehydroge 93.7 0.86 1.9E-05 42.2 11.3 39 220-258 4-43 (277)
497 PRK07067 sorbitol dehydrogenas 93.7 0.13 2.8E-06 47.0 5.7 41 221-261 7-48 (257)
498 PRK10538 malonic semialdehyde 93.7 0.74 1.6E-05 41.8 10.7 39 221-259 1-40 (248)
499 PRK14177 bifunctional 5,10-met 93.7 0.14 3E-06 48.1 5.8 93 193-337 140-233 (284)
500 PRK07677 short chain dehydroge 93.7 1 2.3E-05 40.9 11.7 41 221-261 2-43 (252)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=9e-59 Score=483.95 Aligned_cols=358 Identities=63% Similarity=0.989 Sum_probs=321.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||||||+++++++|++||+++|++|++|++++|++++|..+|++|++||++++++||+++||||+++
T Consensus 117 G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv 196 (737)
T TIGR02441 117 GSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLV 196 (737)
T ss_pred CEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEec
Confidence 68999999999999999999985579999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+.++.++.+.++..+++.+.+.+++.+++..+....+.+...+ +.........+.+...+...+..+.+++++++|+|
T Consensus 197 ~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap 275 (737)
T TIGR02441 197 DPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVH-KITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAP 275 (737)
T ss_pred CCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccC-ccchhhcccchhHHHHHHHHHHHHHHhccCCCccH
Confidence 86445566677788888999999999998765544443332211 11111111224467788999999999999999999
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCcchHHHHHHHH
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~ 240 (359)
.+++++++.+...+++++++.|.+.|.+++.|++++..++.|+.+|..++.+.+.+++++++|+|||+|.||.+||..++
T Consensus 276 ~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA~~~a 355 (737)
T TIGR02441 276 LKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFGKPQRPVKTLAVLGAGLMGAGIAQVSV 355 (737)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCCCCCCcccEEEEECCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877654445689999999999999999999999
Q ss_pred HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHH
Q psy9056 241 DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKE 320 (359)
Q Consensus 241 ~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~ 320 (359)
.+|++|+++|++++.++.+..++...+++..+.+.+++...+..+++++++++++++++||+||||+||+.++|+++|++
T Consensus 356 ~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~ 435 (737)
T TIGR02441 356 DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFEDLSLKHKVIKE 435 (737)
T ss_pred hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccCCeehhhccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 321 IEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 321 l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 436 l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff 474 (737)
T TIGR02441 436 VEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYF 474 (737)
T ss_pred HHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEecc
Confidence 999999999999999999999999999999999999997
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.6e-56 Score=466.17 Aligned_cols=340 Identities=33% Similarity=0.475 Sum_probs=303.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|..+|++|++||++++++||+++||||+++
T Consensus 111 G~alGGGleLalacD~ria~~~--a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv 188 (714)
T TIGR02437 111 GIALGGGCECVLATDFRIADDT--AKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVV 188 (714)
T ss_pred CeeecHHHHHHHhCCEEEEeCC--CEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEee
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++..........++.- ... +......+...+......+.++..+++|+|
T Consensus 189 ~~-------------~~l~~~a~~~a~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pap 251 (714)
T TIGR02437 189 TA-------------DKLGAAALQLLKDAINGKLDWKAKRQPK---LEP-LKLSKIEAMMSFTTAKGMVAQVAGPHYPAP 251 (714)
T ss_pred Ch-------------hHHHHHHHHHHHHHhhcCCcccccCCCC---ccc-ccccchHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 98 8899999999998766432222111100 000 000112333445666676778899999999
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC--CCCCCccEEEEECCCcchHHHHHH
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG--KPQTPVKTVAVLGAGLMGAGIAHV 238 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~--~~~~~~~kI~IIG~G~mG~~iA~~ 238 (359)
..+++.++.+...+++++++.|.+.|.+++.|++++++++.|+.+|..++.+.. ..++++++|+|||+|.||.+||..
T Consensus 252 ~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~~~~~~~~i~~v~ViGaG~mG~gIA~~ 331 (714)
T TIGR02437 252 MTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKKADKIAKDVKQAAVLGAGIMGGGIAYQ 331 (714)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCCCCCCccccceEEEECCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765422 345799999999999999999999
Q ss_pred HHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHH
Q psy9056 239 TVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVI 318 (359)
Q Consensus 239 l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~ 318 (359)
++.+|++|+++|++++.++.+..++...++...+.+.+++...+..+++++++++++.+++||+||||+||+.++|+++|
T Consensus 332 ~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~l~~K~~vf 411 (714)
T TIGR02437 332 SASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVL 411 (714)
T ss_pred HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999989999999999999889999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 319 KEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 319 ~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+++.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 412 ~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff 452 (714)
T TIGR02437 412 AEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFF 452 (714)
T ss_pred HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecC
Confidence 99999999999999999999999999999999999999997
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.9e-56 Score=466.50 Aligned_cols=338 Identities=36% Similarity=0.530 Sum_probs=302.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+++
T Consensus 111 G~a~GgG~~LAlacD~ria~~~--a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv 188 (715)
T PRK11730 111 GYALGGGCECVLATDYRVASPD--ARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVV 188 (715)
T ss_pred CEeehHHHHHHHhCCEEEEcCC--CEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCC--CCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKP--MIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP 158 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (359)
|+ +++.+.+.+++++++..+......+. ..|..+ ....+...+...+..+.++..+++|
T Consensus 189 ~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~------~~~~~~~~~~~~k~~~~~~~~~~~p 249 (715)
T PRK11730 189 AP-------------EKLQEAALALLKQAIAGKLDWKARRQPKLEPLKL------SKIEAMMSFTTAKGMVAQKAGKHYP 249 (715)
T ss_pred CH-------------HHHHHHHHHHHHHHhhcCCccccccCcccccccc------cchhHHHHHHHHHHHHHHhhccCCc
Confidence 98 88999999999999987532111110 000000 0122233445555666777899999
Q ss_pred cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC--CCCCCccEEEEECCCcchHHHH
Q psy9056 159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG--KPQTPVKTVAVLGAGLMGAGIA 236 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~--~~~~~~~kI~IIG~G~mG~~iA 236 (359)
++..+++.++.+...+++++++.|.+.+..++.|+|+++++++|+++|..++.+.. .+...|++|+|||+|.||.+||
T Consensus 250 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~~~~~~~i~~v~ViGaG~mG~gIA 329 (715)
T PRK11730 250 APMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGAGIMGGGIA 329 (715)
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCCCCccccceEEEECCchhHHHHH
Confidence 99999999999988999999999999999999999999999999999988765422 3457899999999999999999
Q ss_pred HHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHH
Q psy9056 237 HVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQ 316 (359)
Q Consensus 237 ~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~ 316 (359)
..++.+|++|+++|++++.++.+...+...+++..+.+.+++......+++++++++++.+++||+||||+||+.++|++
T Consensus 330 ~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~l~~K~~ 409 (715)
T PRK11730 330 YQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAA 409 (715)
T ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEecccCcHHHHHH
Confidence 99999999999999999999999999999999999999999988888999999999998899999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 317 VIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 317 v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+|+++.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 410 vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff 452 (715)
T PRK11730 410 VLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFF 452 (715)
T ss_pred HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecC
Confidence 9999999999999999999999999999999999999999997
No 4
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.1e-56 Score=463.84 Aligned_cols=337 Identities=46% Similarity=0.690 Sum_probs=303.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++++++|++||+++|++|++|++++|++++|..+|++|++||++++++||+++||||+++
T Consensus 110 G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv 189 (708)
T PRK11154 110 GACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV 189 (708)
T ss_pred CeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEec
Confidence 68999999999999999999874569999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhh-hhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD-VALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
|+ +++.+.+.++++++...... .+ ... .+...+..+...+......+.++++|++++
T Consensus 190 ~~-------------~~l~~~a~~~A~~~~~~~~~----~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A 247 (708)
T PRK11154 190 PH-------------SILLEVAVELAKKGKPARRP----LP-----VRERLLEGNPLGRALLFKQARKKTLAKTQGNYPA 247 (708)
T ss_pred Ch-------------HHHHHHHHHHHHhcCCccCc----CC-----chhhhcccCchhHHHHHHHHHHHHHHhcccCChH
Confidence 98 88999999999884211110 00 000 011123456778888899999999999999
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC-CCCCCccEEEEECCCcchHHHHHH
Q psy9056 160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG-KPQTPVKTVAVLGAGLMGAGIAHV 238 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~-~~~~~~~kI~IIG~G~mG~~iA~~ 238 (359)
+..++++++.+...++++++..|.+.|..++.|+|+++++++|+.+|..++.+.. .++.++++|+|||+|.||.+||..
T Consensus 248 ~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~~~~~~~i~~v~ViGaG~mG~giA~~ 327 (708)
T PRK11154 248 PERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGSDAKPRPVNKVGVLGGGLMGGGIAYV 327 (708)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEECCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999887664331 244789999999999999999999
Q ss_pred HH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHH
Q psy9056 239 TV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQV 317 (359)
Q Consensus 239 l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v 317 (359)
++ .+|++|+++|++++.++.+...++..+++..+.+.+++......+++|+++++++++++||+||||+||+.++|+++
T Consensus 328 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~~~~K~~v 407 (708)
T PRK11154 328 TATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQM 407 (708)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccccHHHHHHH
Confidence 99 88999999999999999999999999999999999999888888899999999988999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 318 IKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 318 ~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
|+++.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 408 ~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff 449 (708)
T PRK11154 408 VAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYF 449 (708)
T ss_pred HHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecC
Confidence 999999999999999999999999999999999999999997
No 5
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=4.3e-56 Score=462.78 Aligned_cols=337 Identities=43% Similarity=0.655 Sum_probs=301.0
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||||||+++++++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 105 G~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv 184 (699)
T TIGR02440 105 GACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV 184 (699)
T ss_pred CEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEec
Confidence 68999999999999999999875689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhh-hhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVL-DVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
|+ +++.+.+.+++++. .+. + ++. ... ....+.+......+......+.+++.+++|+
T Consensus 185 ~~-------------~~l~~~a~~~A~~~--~~~---~-~~~---~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a 242 (699)
T TIGR02440 185 PQ-------------SILLDTAVEMALKG--KPI---R-KPL---SLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPA 242 (699)
T ss_pred Ch-------------hHHHHHHHHHHHhC--CCC---C-CCc---cchhhhcccCchhHHHHHHHHHHHHHHhcccCChh
Confidence 98 88999999999761 111 0 000 001 1112223445566677788888889999999
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCC-CCCCCccEEEEECCCcchHHHHHH
Q psy9056 160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLG-KPQTPVKTVAVLGAGLMGAGIAHV 238 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~-~~~~~~~kI~IIG~G~mG~~iA~~ 238 (359)
+..+++.++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+.. ....++++|+|||+|.||.+||..
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~v~ViGaG~mG~~iA~~ 322 (699)
T TIGR02440 243 AERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGSDATPAKIKKVGILGGGLMGGGIASV 322 (699)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccEEEEECCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887664332 234688999999999999999999
Q ss_pred HH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHH
Q psy9056 239 TV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQV 317 (359)
Q Consensus 239 l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v 317 (359)
++ ++|++|+++|++++.++.+..++...+++..+.+.+++...+..+.+|+++++++.+++||+||||+||+.++|+++
T Consensus 323 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E~l~~K~~v 402 (699)
T TIGR02440 323 TATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQM 402 (699)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccccHHHHHHH
Confidence 98 58999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 318 IKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 318 ~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
|++|.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 403 ~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~Hff 444 (699)
T TIGR02440 403 VKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYF 444 (699)
T ss_pred HHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecC
Confidence 999999999999999999999999999999999999999997
No 6
>KOG1680|consensus
Probab=99.97 E-value=1.1e-30 Score=235.01 Aligned_cols=154 Identities=29% Similarity=0.380 Sum_probs=144.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|||+|||++|+++||+|||+++ ++|++|+.++|++|++|||++|++.+|..+|++|++||++++++||+++||||+|+
T Consensus 136 G~AlgGG~ELalmCDirva~~~--Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vv 213 (290)
T KOG1680|consen 136 GFALGGGLELALMCDIRVAGEG--AKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVV 213 (290)
T ss_pred ceeeccchhhhhhcceEeccCC--CeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEee
Confidence 7999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|. ++++.+|.+++++|++.|+.+.
T Consensus 214 p~-------------~~~l~eAv~l~~~Ia~~~~~~v------------------------------------------- 237 (290)
T KOG1680|consen 214 PS-------------GDALGEAVKLAEQIAKNSPLVV------------------------------------------- 237 (290)
T ss_pred cc-------------hhHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence 99 8899999999999999987322
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR 212 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~ 212 (359)
...+++++.+.+.++.+++..|.+.|...+..+|.+|||.+|-+||+++|.+
T Consensus 238 ~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k 289 (290)
T KOG1680|consen 238 RADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK 289 (290)
T ss_pred HHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence 2456777888889999999999999999999999999999999999998854
No 7
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.7e-29 Score=234.13 Aligned_cols=154 Identities=22% Similarity=0.310 Sum_probs=141.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 101 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 178 (255)
T PRK08150 101 GAVVGGGLELASAAHIRVADES--TYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLV 178 (255)
T ss_pred CEEEcHHHHHHHhCCEEEEeCC--CEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEee
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++.. .
T Consensus 179 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~ 202 (255)
T PRK08150 179 PA-------------GEALDKAMELARRIAQNAPLT-------------------------------------------N 202 (255)
T ss_pred Cc-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999987732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR 212 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~ 212 (359)
..+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+|++
T Consensus 203 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 203 FAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 2456677777677889999999999999999999999999999999998853
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.8e-29 Score=234.31 Aligned_cols=153 Identities=28% Similarity=0.407 Sum_probs=141.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 103 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 180 (257)
T PRK05862 103 GYALGGGCELAMMCDIIIAADT--AKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVV 180 (257)
T ss_pred cEEeHHHHHHHHHCCEEEEeCC--CEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEee
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.++. +.
T Consensus 181 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~ 204 (257)
T PRK05862 181 PA-------------DKLLDEALAAATTIASFSLP-------------------------------------------AV 204 (257)
T ss_pred CH-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999987762 33
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|++.
T Consensus 205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~~ 255 (257)
T PRK05862 205 MMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFK 255 (257)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCCC
Confidence 356777787777889999999999999999999999999999999998763
No 9
>PLN02600 enoyl-CoA hydratase
Probab=99.96 E-value=4.7e-29 Score=230.75 Aligned_cols=153 Identities=27% Similarity=0.363 Sum_probs=141.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 97 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 174 (251)
T PLN02600 97 GAALGGGLELALSCDLRICGEE--AVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCV 174 (251)
T ss_pred CeecchhHHHHHhCCEEEeeCC--CEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.++++++++.|+.. .
T Consensus 175 ~~-------------~~~~~~a~~~a~~la~~~p~a-------------------------------------------~ 198 (251)
T PLN02600 175 PA-------------GEAYEKALELAQEINQKGPLA-------------------------------------------I 198 (251)
T ss_pred Ch-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999988732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++.++.|.+.+..++.++|++|++++|++||+|++.
T Consensus 199 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~ 249 (251)
T PLN02600 199 KMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYT 249 (251)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 256677777777889999999999999999999999999999999998763
No 10
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=3.7e-29 Score=231.86 Aligned_cols=153 Identities=24% Similarity=0.348 Sum_probs=140.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 100 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 177 (254)
T PRK08252 100 GYALAGGFELALACDLIVAARD--AKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLT 177 (254)
T ss_pred CEEehHHHHHHHhCCEEEEeCC--CEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence 6799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..|+. +.
T Consensus 178 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~ 201 (254)
T PRK08252 178 EP-------------GQALDAALELAERIAANGPL-------------------------------------------AV 201 (254)
T ss_pred Cc-------------chHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988763 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|++++.....+++++++.|.+.+..++.++|+++++.+|++||+|+|.
T Consensus 202 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 252 (254)
T PRK08252 202 AASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVWT 252 (254)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 356677777767788999999999999999999999999999999988763
No 11
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=3.6e-29 Score=232.76 Aligned_cols=152 Identities=26% Similarity=0.354 Sum_probs=140.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 109 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 186 (260)
T PRK05980 109 GLAFGGGCEITEAVHLAIASER--ALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVV 186 (260)
T ss_pred CEEEhhhhHHhHhCCEEEecCC--CEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCccc
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.++++++++.++. +.
T Consensus 187 ~~-------------~~l~~~a~~~a~~la~~~p~-------------------------------------------a~ 210 (260)
T PRK05980 187 PH-------------EELLPAARALARRIIRHSPV-------------------------------------------AV 210 (260)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988762 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 210 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~ 210 (359)
..+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|++
T Consensus 211 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 211 AAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY 260 (260)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 34566777777788999999999999999999999999999999998764
No 12
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.96 E-value=5.4e-29 Score=231.05 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=141.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 102 G~a~GgG~~lala~D~ria~~~--a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 179 (256)
T TIGR02280 102 GVAAGAGANLALACDIVLAAES--ARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVV 179 (256)
T ss_pred CeeehHHHHHHHhCCEEEecCC--CEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.|+.. .
T Consensus 180 ~~-------------~~l~~~a~~~a~~la~~~~~~-------------------------------------------~ 203 (256)
T TIGR02280 180 DD-------------AALMDEAQALAVHLAAQPTRG-------------------------------------------L 203 (256)
T ss_pred Ch-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999988632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+|++.
T Consensus 204 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 254 (256)
T TIGR02280 204 ALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFT 254 (256)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCC
Confidence 356677777777889999999999999999999999999999999998873
No 13
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=5.7e-29 Score=231.14 Aligned_cols=153 Identities=27% Similarity=0.336 Sum_probs=140.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 104 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 181 (258)
T PRK09076 104 GYAMGGGLECALACDIRIAEEQ--AQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVV 181 (258)
T ss_pred CEEecHHHHHHHhCCEEEecCC--CEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++.. .
T Consensus 182 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~ 205 (258)
T PRK09076 182 EK-------------GEAREAALALAQKVANQSPSA-------------------------------------------V 205 (258)
T ss_pred Cc-------------hhHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999987732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|++++.....++++.++.|.+.+..++.++|++|++++|++||+|++.
T Consensus 206 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 256 (258)
T PRK09076 206 AACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWK 256 (258)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 346667777767789999999999999999999999999999999998763
No 14
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=5.4e-29 Score=231.25 Aligned_cols=153 Identities=27% Similarity=0.395 Sum_probs=141.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 103 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 180 (257)
T PRK07658 103 GAALGGGLELAMSCHIRFATES--AKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVF 180 (257)
T ss_pred CeeeeHHHHHHHhCCEEEecCC--CcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.++. +.
T Consensus 181 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~ 204 (257)
T PRK07658 181 PE-------------ETLLDDAKKLAKKIAGKSPA-------------------------------------------TT 204 (257)
T ss_pred Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988762 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus 205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~ 255 (257)
T PRK07658 205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFS 255 (257)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 356677777777789999999999999999999999999999999998763
No 15
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=6.1e-29 Score=230.58 Aligned_cols=153 Identities=22% Similarity=0.275 Sum_probs=140.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 101 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 178 (255)
T PRK06563 101 GYCLTLGIELMLAADIVVAADN--TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVV 178 (255)
T ss_pred CeeecHHHHHHHhCCEEEecCC--CEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++.. .
T Consensus 179 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~ 202 (255)
T PRK06563 179 PP-------------GEQLERAIELAERIARAAPLG-------------------------------------------V 202 (255)
T ss_pred CH-------------HHHHHHHHHHHHHHHhcCHHH-------------------------------------------H
Confidence 98 889999999999999887632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus 203 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 253 (255)
T PRK06563 203 QATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARFK 253 (255)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 245666676667789999999999999999999999999999999998763
No 16
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=8.9e-29 Score=230.20 Aligned_cols=153 Identities=27% Similarity=0.337 Sum_probs=140.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 107 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 184 (261)
T PRK08138 107 GYALGGGCELAMHADIIVAGES--ASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVV 184 (261)
T ss_pred cEEEcHHHHHHHhCCEEEecCC--CEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEec
Confidence 6799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.|+. ++
T Consensus 185 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~ 208 (261)
T PRK08138 185 ED-------------EQTLPRALELAREIARMPPL-------------------------------------------AL 208 (261)
T ss_pred Cc-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999987752 23
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++++..|.+.+..++.++++++++++|++||+|++.
T Consensus 209 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~~ 259 (261)
T PRK08138 209 AQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAYK 259 (261)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 356677777777889999999999999999999999999999999998763
No 17
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.96 E-value=8.6e-29 Score=229.54 Aligned_cols=153 Identities=30% Similarity=0.404 Sum_probs=141.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 101 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 178 (255)
T PRK09674 101 GYALGAGCELALLCDIVIAGEN--ARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVF 178 (255)
T ss_pred CEeehHHHHHHHhCCEEEecCC--CEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..|+. +.
T Consensus 179 ~~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------a~ 202 (255)
T PRK09674 179 PP-------------ELTLERALQLASKIARHSPL-------------------------------------------AL 202 (255)
T ss_pred Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988763 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++.++.|.+.+..++.++|+++++++|++||+|++.
T Consensus 203 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~ 253 (255)
T PRK09674 203 RAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFK 253 (255)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 356677777777889999999999999999999999999999999988763
No 18
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.96 E-value=1e-28 Score=229.71 Aligned_cols=153 Identities=30% Similarity=0.429 Sum_probs=142.0
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 106 G~a~GgG~~lal~cD~~va~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK05809 106 GFALGGGCELSMACDIRIASEK--AKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVV 183 (260)
T ss_pred CeeecHHHHHHHhCCEEEeeCC--CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCccc
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++. +.
T Consensus 184 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 207 (260)
T PRK05809 184 EP-------------EKLMEEAKALANKIAANAPI-------------------------------------------AV 207 (260)
T ss_pred Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988762 23
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus 208 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~ 258 (260)
T PRK05809 208 KLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFK 258 (260)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 356777777777889999999999999999999999999999999998763
No 19
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=9.1e-29 Score=230.43 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=140.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 109 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 186 (263)
T PRK07799 109 GPAIAGGTEILQGTDIRVAGES--AKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVV 186 (263)
T ss_pred CeEeccHHHHHHhCCEEEecCC--CEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..|+. +.
T Consensus 187 ~~-------------~~l~~~a~~~a~~~~~~~~~-------------------------------------------a~ 210 (263)
T PRK07799 187 PD-------------GQALDKALELAELINANGPL-------------------------------------------AV 210 (263)
T ss_pred Cc-------------chHHHHHHHHHHHHHhcChH-------------------------------------------HH
Confidence 98 78899999999999988762 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus 211 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~ 261 (263)
T PRK07799 211 QAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNFQ 261 (263)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCC
Confidence 356677777777889999999999999999999999999999999988763
No 20
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.1e-28 Score=229.32 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=139.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 103 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv 180 (259)
T PRK06494 103 GVAMGGGFELALACDLIVAAEN--ATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVV 180 (259)
T ss_pred CEEecHHHHHHHhCCEEEEeCC--CEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++++..|+. +.
T Consensus 181 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 204 (259)
T PRK06494 181 PA-------------GELLAAAERWADDILACSPL-------------------------------------------SI 204 (259)
T ss_pred CH-------------hHHHHHHHHHHHHHHhcCHH-------------------------------------------HH
Confidence 98 88999999999999998873 22
Q ss_pred HHHHHHHHHhhccChhhHHHHH--HHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAE--AEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.| ...+..++.++|+++++.+|++||+|++.
T Consensus 205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 257 (259)
T PRK06494 205 RASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRWK 257 (259)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCC
Confidence 3456677776677889999998 55788999999999999999999987763
No 21
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.6e-28 Score=228.75 Aligned_cols=152 Identities=22% Similarity=0.298 Sum_probs=140.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 185 (262)
T PRK08140 108 GVAAGAGANLALACDIVLAARS--ASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVV 185 (262)
T ss_pred CeeehhHHHHHHhCCEEEecCC--CEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++++..++. +.
T Consensus 186 ~~-------------~~l~~~a~~~a~~ia~~~~~-------------------------------------------a~ 209 (262)
T PRK08140 186 DD-------------AALADEAQQLAAHLATQPTR-------------------------------------------GL 209 (262)
T ss_pred Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988763 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 210 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~ 210 (359)
..+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|.+
T Consensus 210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 210 ALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 35667777777788999999999999999999999999999999998776
No 22
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.3e-28 Score=229.84 Aligned_cols=153 Identities=22% Similarity=0.256 Sum_probs=141.0
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|+++++++++|..++++|+++|++++++||+++||||+++
T Consensus 112 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 189 (266)
T PRK09245 112 GPAIGAGCDLACMCDIRIASET--ARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVV 189 (266)
T ss_pred CEeecHHHHHHHhCCEEEecCC--CEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++++..|+.. .
T Consensus 190 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~ 213 (266)
T PRK09245 190 PA-------------DQLLPAARALAERIAANPPHA-------------------------------------------L 213 (266)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999988732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|++++.....++++.+..|.+.+..++.++|+++++.+|++||+|.+.
T Consensus 214 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 264 (266)
T PRK09245 214 RLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVFT 264 (266)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCCC
Confidence 246677777777788999999999999999999999999999999998763
No 23
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.96 E-value=1.3e-28 Score=230.71 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=140.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 120 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 197 (275)
T PLN02664 120 GACIGGGVDIVTACDIRYCSED--AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVF 197 (275)
T ss_pred CccccchHHHHHhCCEEEecCC--CEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+. +++.+.+.+++++++..++.. .
T Consensus 198 ~~~------------~~l~~~~~~~a~~ia~~~p~a-------------------------------------------~ 222 (275)
T PLN02664 198 GSK------------EDLDEGVRLIAEGIAAKSPLA-------------------------------------------V 222 (275)
T ss_pred CCh------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 841 779899999999999988732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.++|++||+++|++||+|.+.
T Consensus 223 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~ 273 (275)
T PLN02664 223 TGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFA 273 (275)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 245666777667789999999999999999999999999999999998764
No 24
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.1e-28 Score=230.92 Aligned_cols=153 Identities=19% Similarity=0.241 Sum_probs=140.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 118 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv 195 (272)
T PRK06142 118 GWCIGGGVDLISACDMRYASAD--AKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVY 195 (272)
T ss_pred CccccchHHHHHhCCEEEecCC--CeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEec
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+. +++.+.+.+++++++..|+.. .
T Consensus 196 ~~~------------~~l~~~a~~~a~~ia~~~~~a-------------------------------------------~ 220 (272)
T PRK06142 196 DDA------------DALLAAAHATAREIAAKSPLA-------------------------------------------V 220 (272)
T ss_pred CCH------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 852 679999999999999887732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 210 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~ 210 (359)
..+|+.++.....++++.++.|.+.+..++.|+|++||+.+|++||+|+|
T Consensus 221 ~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 221 RGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 24666777777778999999999999999999999999999999999876
No 25
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.7e-28 Score=228.26 Aligned_cols=153 Identities=29% Similarity=0.467 Sum_probs=141.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 106 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK07657 106 GIALGGGLELALACDFRIAAES--ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVV 183 (260)
T ss_pred CEeechHHHHHHhCCEEEeeCC--CEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++++..++. +.
T Consensus 184 ~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a~ 207 (260)
T PRK07657 184 PA-------------HLLEEKAIEIAEKIASNGPI-------------------------------------------AV 207 (260)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988763 23
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus 208 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~~ 258 (260)
T PRK07657 208 RQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYK 258 (260)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCC
Confidence 356677777777889999999999999999999999999999999988763
No 26
>PLN02888 enoyl-CoA hydratase
Probab=99.96 E-value=2.9e-28 Score=227.07 Aligned_cols=154 Identities=23% Similarity=0.289 Sum_probs=140.0
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 108 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 185 (265)
T PLN02888 108 GFAITAGFEIALACDILVASRG--AKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVV 185 (265)
T ss_pred CeeechHHHHHHhCCEEEecCC--CEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++. +.
T Consensus 186 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 209 (265)
T PLN02888 186 EE-------------SELLKKAREVAEAIIKNNQG-------------------------------------------MV 209 (265)
T ss_pred Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999998773 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhh--cChhhHHHHHhHhhhhhhhhcC
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLA--MTPQSKGLMGLFRAQTECKKNR 212 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~s~~~~~~~~af~~k~~~~~~~ 212 (359)
..+|+.++.....+++++++.|.+.+..++ .++|+++++++|++||++|+.+
T Consensus 210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 210 LRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 356677777777888999999988888875 5999999999999999988753
No 27
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=2.5e-28 Score=228.09 Aligned_cols=153 Identities=19% Similarity=0.232 Sum_probs=140.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 115 G~a~GgG~~LalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 192 (269)
T PRK06127 115 GYCIGGGMGIALACDIRIAAED--SRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVT 192 (269)
T ss_pred CEEecHHHHHHHhCCEEEeeCC--CEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++++..++.. .
T Consensus 193 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~ 216 (269)
T PRK06127 193 AA-------------DDLETALADYAATIAGNAPLT-------------------------------------------L 216 (269)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999887632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus 217 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 267 (269)
T PRK06127 217 RAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK 267 (269)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence 245666676667788999999999999999999999999999999998764
No 28
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=2.9e-28 Score=226.69 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=140.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 107 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07511 107 GAAAGAGFSLALACDLLVAARD--AKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLA 184 (260)
T ss_pred CeeehHHHHHHHhCCEEEeeCC--CEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+++.++++++++.++. +.
T Consensus 185 ~~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------~~ 208 (260)
T PRK07511 185 EP-------------GQALAEALALADQLAAGSPN-------------------------------------------AL 208 (260)
T ss_pred Cc-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 78899999999999987762 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 210 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~ 210 (359)
..+|+.++.....+++++++.|.+.+..++.++++++++++|+++|+|++
T Consensus 209 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 209 ARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 34667777777788999999999999999999999999999999998876
No 29
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.96 E-value=3.2e-28 Score=226.49 Aligned_cols=153 Identities=22% Similarity=0.302 Sum_probs=138.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++
T Consensus 103 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 180 (261)
T PRK03580 103 GYAFGGGFELALAADFIVCADN--ASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVV 180 (261)
T ss_pred CeeehHHHHHHHHCCEEEecCC--CEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++.+++..++.. .
T Consensus 181 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~ 204 (261)
T PRK03580 181 PQ-------------AELMDRARELAQQLVNSAPLA-------------------------------------------I 204 (261)
T ss_pred CH-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999887732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHH----HHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEA----EGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~----~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|. +.+..++.++|+++++++|++||+|++.
T Consensus 205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~ 259 (261)
T PRK03580 205 AALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVWK 259 (261)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCCC
Confidence 24566677766778888888886 4778899999999999999999987763
No 30
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=3.3e-28 Score=228.20 Aligned_cols=153 Identities=21% Similarity=0.227 Sum_probs=140.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCC-CcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p-~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++| ++|++++|++++|..++++|+++|++++++||+++||||++
T Consensus 122 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 199 (277)
T PRK08258 122 GVCAGAGAILAMASDLRLGTPS--AKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRL 199 (277)
T ss_pred CeeehHHHHHHHhCCEEEecCC--CEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEe
Confidence 6899999999999999999998 99999999999995 78899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
+|+ +++++.+.+++++++..|+..
T Consensus 200 v~~-------------~~l~~~a~~~a~~la~~~~~a------------------------------------------- 223 (277)
T PRK08258 200 VEP-------------EELLAEAQALARRLAAGPTFA------------------------------------------- 223 (277)
T ss_pred cCH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence 998 889999999999999988732
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
...+|+.++.....++++.++.|.+.+..++.|+|+++++++|++||+|++.
T Consensus 224 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 275 (277)
T PRK08258 224 HGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFE 275 (277)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 2246677777777889999999999999999999999999999999998763
No 31
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=2.4e-28 Score=227.18 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=139.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 107 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 107 GPAAGLGLSIALTADYVIADIS--AKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred CceecHHHHHHHhCCEEEEcCC--CEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+ +++.+.+.+++++++..|+. +.
T Consensus 185 -~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------a~ 207 (260)
T PRK07659 185 -G-------------GDFQTAAKQKISEWLQKPLK-------------------------------------------AM 207 (260)
T ss_pred -h-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 6 77999999999999988762 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus 208 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~ 258 (260)
T PRK07659 208 IETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVFK 258 (260)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCC
Confidence 346667777777889999999999999999999999999999999998763
No 32
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.96 E-value=4.4e-28 Score=227.24 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=141.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCC-CCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGL-LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi-~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|.|+|||++|+++|||||++++ ++|++||+++|+ +|+++++++|++++|..++++|++||+.++++||+++||||++
T Consensus 116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~v 193 (278)
T PLN03214 116 GACPAGGCAVSLCCDYRLQTTE--GTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEV 193 (278)
T ss_pred CcccchHHHHHHhCCEEEecCC--CEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEe
Confidence 6899999999999999999988 999999999999 5999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
+|+ +++++.+.+++.+++..++. +
T Consensus 194 v~~-------------~~l~~~a~~~a~~l~~~~~~-------------------------------------------a 217 (278)
T PLN03214 194 VPA-------------AALMEAAASAMERALKLPSA-------------------------------------------A 217 (278)
T ss_pred cCh-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------H
Confidence 998 88999999999999988762 2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056 160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL 213 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~ 213 (359)
...+|+.++.....+++++++.|.+.+..++.|+|+++++.+|++|.+.|+.+.
T Consensus 218 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 218 RAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 224666777776778899999999999999999999999999999999877544
No 33
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.95 E-value=2.6e-28 Score=226.73 Aligned_cols=153 Identities=15% Similarity=0.206 Sum_probs=133.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++.+|++++|..++++|+++|++++++||+++||||+++
T Consensus 106 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (259)
T TIGR01929 106 GYAIGGGHVLHVVCDLTIAAEN--ARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVV 183 (259)
T ss_pred CEEehHHHHHHHhCCEEEecCC--CEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCccccc
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..|+...+
T Consensus 184 ~~-------------~~l~~~a~~~a~~la~~~~~a~~------------------------------------------ 208 (259)
T TIGR01929 184 PL-------------ADLEKETVRWCREILQKSPMAIR------------------------------------------ 208 (259)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHHHH------------------------------------------
Confidence 98 89999999999999998873222
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR 212 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~ 212 (359)
.+|++++.... ........|.+.+..++.++|+++++.+|++||+|++.+
T Consensus 209 -~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 258 (259)
T TIGR01929 209 -MLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFSK 258 (259)
T ss_pred -HHHHHHHhhhc-cchHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Confidence 34455554332 234555667788889999999999999999999988743
No 34
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.95 E-value=5.2e-28 Score=225.55 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=139.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|+++ +++|++++|..++++|+++|++++++||+++||||+++
T Consensus 113 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 189 (266)
T PRK08139 113 GIATAAGCQLVASCDLAVAADT--ARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVV 189 (266)
T ss_pred ceeeHHHHHHHHhCCEEEEeCC--CEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEee
Confidence 6899999999999999999998 99999999999999865 56899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++. +.
T Consensus 190 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 213 (266)
T PRK08139 190 PA-------------DALDAAVARLAAVIAAKSPA-------------------------------------------AV 213 (266)
T ss_pred Ch-------------hHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999998773 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++.
T Consensus 214 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 264 (266)
T PRK08139 214 RIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWR 264 (266)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 356677787777889999999999999999999999999999999988763
No 35
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=5.7e-28 Score=224.06 Aligned_cols=148 Identities=24% Similarity=0.309 Sum_probs=136.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|+ |+++++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 109 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 185 (256)
T PRK06143 109 GWCLGGGLELAAACDLRIAAHD--AQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185 (256)
T ss_pred CEEeehhHHHHHhCCEEEecCC--CEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeec
Confidence 6899999999999999999988 999999999998 8888899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..|+. +.
T Consensus 186 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 209 (256)
T PRK06143 186 PL-------------AELDAAVERLAASLAGCGPQ-------------------------------------------AL 209 (256)
T ss_pred CH-------------HHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence 98 89999999999999998873 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE 207 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~ 207 (359)
..+|+.++.....++++.++.|.+.+..++.++|+++++++|++||+
T Consensus 210 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 210 RQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 34667777777788999999999999999999999999999999974
No 36
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=4.5e-28 Score=226.17 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=140.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++|||++++
T Consensus 112 G~a~GgG~~lalacD~~ia~~~--a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 189 (266)
T PRK05981 112 GPAAGVGMSFALMGDLILCARS--AYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVV 189 (266)
T ss_pred CEeehHHHHHHHhCCEEEecCC--CEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEee
Confidence 6799999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.|+. +.
T Consensus 190 ~~-------------~~~~~~a~~~a~~l~~~~~~-------------------------------------------a~ 213 (266)
T PRK05981 190 DD-------------AELMAEAMKLAHELANGPTV-------------------------------------------AL 213 (266)
T ss_pred CH-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence 98 88999999999999987762 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+++++....++++.++.|...+..++.|+|+++++.+|++||+|++.
T Consensus 214 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~ 264 (266)
T PRK05981 214 GLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQFK 264 (266)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence 245667777777889999999999999999999999999999999998763
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=5.1e-28 Score=224.95 Aligned_cols=152 Identities=26% Similarity=0.340 Sum_probs=140.0
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|+++++++++|..++++|+++|++++++||+++||||+++
T Consensus 105 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 182 (259)
T PRK06688 105 GPAVGVGVSLALACDLVYASES--AKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVV 182 (259)
T ss_pred CeeecHHHHHHHhCCEEEecCC--CEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++.. .
T Consensus 183 ~~-------------~~l~~~a~~~a~~i~~~~~~a-------------------------------------------~ 206 (259)
T PRK06688 183 PA-------------AELDAEADAQAAKLAAGPASA-------------------------------------------L 206 (259)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999877621 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 210 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~ 210 (359)
..+|+.++.....++++++..|.+.+..++.++++++++++|++||+|++
T Consensus 207 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 207 RYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 24566677777788999999999999999999999999999999998876
No 38
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=4.5e-28 Score=226.87 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=139.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 117 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 194 (272)
T PRK06210 117 GACAGIGLTHALMCDVRFAADG--AKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVV 194 (272)
T ss_pred CeeehHHHHHHHhCCEEEEeCC--CEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-ccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
|+ +++.+.+.++++++++. ++. +
T Consensus 195 ~~-------------~~l~~~a~~~a~~i~~~~~p~-------------------------------------------a 218 (272)
T PRK06210 195 PP-------------DELMERTLAYAEDLARNVSPA-------------------------------------------S 218 (272)
T ss_pred CH-------------HHHHHHHHHHHHHHHhcCCHH-------------------------------------------H
Confidence 98 88999999999999974 552 2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
...+|+.++.....++++.++.|.+.+..++.+++++|++.+|++||+|.+.
T Consensus 219 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~ 270 (272)
T PRK06210 219 MAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRFP 270 (272)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Confidence 2245666777767889999999999999999999999999999999987763
No 39
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.95 E-value=9.2e-28 Score=211.05 Aligned_cols=138 Identities=35% Similarity=0.549 Sum_probs=125.7
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD 301 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD 301 (359)
||+|||+|.||.+||..++.+|++|++||++++.++.+.++++..++...+.+.+++......++++++++|++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998777999
Q ss_pred EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+||||+||+.++|+++|++|.+++++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~ 138 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFF 138 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999997
No 40
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=8.8e-28 Score=223.71 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=136.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++ ++++++|..++++|+++|++++++||+++||||+++
T Consensus 108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 184 (262)
T PRK05995 108 GDAYAGGMGLVAACDIAVAADH--AVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVV 184 (262)
T ss_pred CEEEhhHHHHHHhCCEEEeeCC--CEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence 6899999999999999999998 9999999999999998765 588999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..|+. +.
T Consensus 185 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 208 (262)
T PRK05995 185 PA-------------EALDAKVDELLAALVANSPQ-------------------------------------------AV 208 (262)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999988762 22
Q ss_pred HHHHHHHHHhhccChhhH-HHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAG-YEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++. ++.|...+..++.++|+++++.+|++||+|+|.
T Consensus 209 ~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 260 (262)
T PRK05995 209 RAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWR 260 (262)
T ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 345666777667788888 888889999999999999999999999998763
No 41
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=1.2e-27 Score=222.72 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=135.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+||++++ ++|++||+++|++|++|+++++ +++|..++++|+++|++++++||+++||||+++
T Consensus 109 G~a~GgG~~lala~D~ria~~~--a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~ 185 (262)
T PRK07468 109 GQAFGGGVGLISVCDVAIAVSG--ARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVV 185 (262)
T ss_pred CEEEhHHHHHHHhCCEEEEeCC--CEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceec
Confidence 6899999999999999999998 9999999999999999998755 559999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|. +++.+.+.+++++++..++.. .
T Consensus 186 ~~-------------~~l~~~~~~~a~~l~~~~~~a-------------------------------------------~ 209 (262)
T PRK07468 186 PA-------------ERLDAAVEAEVTPYLSCAPGA-------------------------------------------V 209 (262)
T ss_pred CH-------------HHHHHHHHHHHHHHHhcCHHH-------------------------------------------H
Confidence 98 889999999999999887632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|++++......+++.++.|.+.+..++.|+|+++++.+|++||+|+|.
T Consensus 210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~ 260 (262)
T PRK07468 210 AAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWR 260 (262)
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 245566665555567888999999999999999999999999999998763
No 42
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.95 E-value=1.3e-27 Score=223.64 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=133.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|+++++.+|++++|..++++|++||++++++||+++||||+++
T Consensus 116 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv 193 (273)
T PRK07396 116 GYAIGGGHVLHLVCDLTIAADN--AIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVV 193 (273)
T ss_pred CEEehHHHHHHHhCCEEEeeCC--cEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeec
Confidence 6799999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++|++.++...+
T Consensus 194 ~~-------------~~l~~~a~~~a~~la~~~~~a~~------------------------------------------ 218 (273)
T PRK07396 194 PL-------------ADLEKETVRWCREMLQNSPMALR------------------------------------------ 218 (273)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHHHH------------------------------------------
Confidence 98 89999999999999998873222
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR 212 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~ 212 (359)
.+|+.++.... ..+...+.|.+.+..++.++|+++++.+|++||+|++.+
T Consensus 219 -~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 268 (273)
T PRK07396 219 -CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSK 268 (273)
T ss_pred -HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCC
Confidence 34445554322 344455567788889999999999999999999988754
No 43
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.95 E-value=2e-27 Score=222.57 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=134.8
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++|||++++
T Consensus 113 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv 190 (275)
T PRK09120 113 GWCFGGGFSPLVACDLAIAADE--AQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESV 190 (275)
T ss_pred CEEechhHHHHHhCCEEEEeCC--cEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceec
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++|+..|+.. .
T Consensus 191 ~~-------------~~l~~~a~~~a~~la~~~p~a-------------------------------------------~ 214 (275)
T PRK09120 191 PL-------------AQLRARTRELAAKLLEKNPVV-------------------------------------------L 214 (275)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 899999999999999987732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHH--HhhhhhcCh-hhHHHHHhHhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAE--GFSQLAMTP-QSKGLMGLFRAQTE 207 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~s~-~~~~~~~af~~k~~ 207 (359)
..+|+.++.....++++.++.|.+ .+..++.++ |+++|+++|++||.
T Consensus 215 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 215 RAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 246677777777888899888764 355678898 89999999999998
No 44
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.95 E-value=2.1e-27 Score=220.36 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=129.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+||++++ ++|++||+++|++|+++++++|++++|..+|++|+++|++++|+||+++||||+++
T Consensus 103 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv 180 (256)
T TIGR03210 103 GYAIGGGNVLVTICDLTIASEK--AQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVV 180 (256)
T ss_pred CEEehhhHHHHHhCCEEEEeCC--CEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeee
Confidence 6899999999999999999988 99999999999998888899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.|+...
T Consensus 181 ~~-------------~~l~~~a~~~a~~ia~~~~~a~------------------------------------------- 204 (256)
T TIGR03210 181 PH-------------DQLDAEVQKWCDEIVEKSPTAI------------------------------------------- 204 (256)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence 98 8999999999999999887322
Q ss_pred HHHHHHHHHhhccChhhHH-HHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056 161 LKILDVVRTGIEKGPSAGY-EAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR 212 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~ 212 (359)
..+|++++...... ... ..|.+.+..++.++|+++++.+|++||+|++.+
T Consensus 205 ~~~K~~l~~~~~~~--~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~ 255 (256)
T TIGR03210 205 AIAKRSFNMDTAHQ--RGIAGMGMYALKLYYDTAESREGVKAFQEKRKPEFRK 255 (256)
T ss_pred HHHHHHHHHhhccc--chHHHHHHHHHHHHccChhHHHHHHHHhccCCCCCCC
Confidence 23445555433221 111 124567778899999999999999999988753
No 45
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=2e-27 Score=220.37 Aligned_cols=149 Identities=25% Similarity=0.249 Sum_probs=138.0
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 107 G~a~GgG~~lala~D~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv 184 (255)
T PRK07260 107 GAVAGAAANMAVAADFCIASTK--TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVA 184 (255)
T ss_pred CeeehhhHHHHHhCCEEEEeCC--CEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceec
Confidence 6799999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.++. +.
T Consensus 185 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 208 (255)
T PRK07260 185 ES-------------EKLEKTCEQLLKKLRRGSSN-------------------------------------------SY 208 (255)
T ss_pred CH-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence 98 88999999999999988762 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE 207 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~ 207 (359)
..+|+.++.....++++.+..|.+.+..++.|+|+++++.+|++||+
T Consensus 209 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 209 AAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 35667777777788999999999999999999999999999999874
No 46
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.95 E-value=2.9e-27 Score=221.33 Aligned_cols=142 Identities=40% Similarity=0.620 Sum_probs=138.0
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
+.+++|+|||+|.||.+||..++..||+|+++|++++.++.+...+...+++..+.|++++...+..+.++++++++.++
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l 80 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL 80 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh
Confidence 46899999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+|||++||+.++|+.+|+++.+++++++|+.||||+++++.+++.+.+|+||+|+|||
T Consensus 81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFf 142 (307)
T COG1250 81 KDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFF 142 (307)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 47
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.95 E-value=1.6e-27 Score=222.13 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=134.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|+++++ ++++++|.+++++|++||+.++++||+++||||+++
T Consensus 110 G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 186 (265)
T PRK05674 110 GAAFGGALGLISCCDMAIGADD--AQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESY 186 (265)
T ss_pred CEEEechhhHhhhcCEEEEeCC--CEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceec
Confidence 6899999999999999999988 9999999999999988765 588999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++.+++..++...
T Consensus 187 ~~-------------~~l~~~a~~~a~~la~~~p~a~------------------------------------------- 210 (265)
T PRK05674 187 PA-------------AELEAQVEAWIANLLLNSPQAL------------------------------------------- 210 (265)
T ss_pred CH-------------HHHHHHHHHHHHHHHhcCHHHH-------------------------------------------
Confidence 98 8899999999999999887322
Q ss_pred HHHHHHHHHhhccChhhHHHH-HHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEA-EAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++.++. +.+.+..++.|+|+++++++|++||+|++.
T Consensus 211 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 211 RASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 245667777777788888765 456778889999999999999999987763
No 48
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=2.8e-27 Score=219.24 Aligned_cols=148 Identities=22% Similarity=0.192 Sum_probs=135.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 102 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv 179 (254)
T PRK08259 102 GYAVAGGLELALWCDLRVAEED--AVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVV 179 (254)
T ss_pred CEEEhHHHHHHHhCCEEEecCC--CEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEee
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++|++.|+.. .
T Consensus 180 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~ 203 (254)
T PRK08259 180 PK-------------GQARAAAEELAAELAAFPQTC-------------------------------------------L 203 (254)
T ss_pred Ch-------------hHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999988732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE 207 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~ 207 (359)
..+|++++.....+++++++.|.+.+..++. +|++|++.+|++|+.
T Consensus 204 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 204 RADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 2456677776677899999999988777777 999999999999876
No 49
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=2e-27 Score=221.25 Aligned_cols=151 Identities=20% Similarity=0.168 Sum_probs=137.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 111 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 188 (262)
T PRK07509 111 GVCFGGGLQIALGADIRIAAPD--TKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVS 188 (262)
T ss_pred CeeecchHHHHHhCCEEEecCC--CEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhh
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
++ +.+.+.+++++++..|+. +.
T Consensus 189 ~~---------------~~~~a~~~a~~l~~~~~~-------------------------------------------~~ 210 (262)
T PRK07509 189 DD---------------PLAAALALAREIAQRSPD-------------------------------------------AI 210 (262)
T ss_pred ch---------------HHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 64 567899999999988763 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++++..|.+.+..++.++|+++++.+|++||+|++.
T Consensus 211 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 261 (262)
T PRK07509 211 AAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKFL 261 (262)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence 345667777777888999999999999999999999999999999988763
No 50
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.95 E-value=2.2e-27 Score=220.74 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=135.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++.++++++|..++++|+++|++++++||+++||||+++
T Consensus 105 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv 182 (261)
T PRK11423 105 GSVWGGAFELIMSCDLIIAAST--STFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVV 182 (261)
T ss_pred cEEechHHHHHHhCCEEEecCC--CEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCccc
Confidence 6799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.++++++++.++.. .
T Consensus 183 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~ 206 (261)
T PRK11423 183 EV-------------EELEDFTLQMAHHISEKAPLA-------------------------------------------I 206 (261)
T ss_pred CH-------------HHHHHHHHHHHHHHHhcCHHH-------------------------------------------H
Confidence 98 889999999999999887632 2
Q ss_pred HHHHHHHHHhhc-cCh-hhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIE-KGP-SAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~-~~~-~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.... .++ ++.++.|.+.+..++.|+|+++++.+|++||+|++.
T Consensus 207 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~~ 259 (261)
T PRK11423 207 AVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVFV 259 (261)
T ss_pred HHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCCC
Confidence 245555654332 233 577888888999999999999999999999998763
No 51
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=2.6e-27 Score=222.07 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=132.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCC-CcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p-~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++| ++|++++|++++|..++++|+++|++++++||+++||||++
T Consensus 118 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~v 195 (276)
T PRK05864 118 GPAIGGGLCLALAADIRVASSS--AYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQ 195 (276)
T ss_pred CEeehhHHHHHHhCCEEEeeCC--CEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence 6899999999999999999998 99999999999997 78889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
+|+ +++++.+.+++++|+..|+..
T Consensus 196 v~~-------------~~l~~~a~~~a~~la~~~p~a------------------------------------------- 219 (276)
T PRK05864 196 VPD-------------EQLLDTCYAIAARMAGFSRPG------------------------------------------- 219 (276)
T ss_pred eCH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence 998 889999999999999887732
Q ss_pred HHHHHHHHHHhhcc-ChhhHHHHHHHHh-hhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 160 PLKILDVVRTGIEK-GPSAGYEAEAEGF-SQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~e~~~~-~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
...+|+.++..... ++++.+..|.... ..++.++|+++++.+|++||+|++.
T Consensus 220 ~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 273 (276)
T PRK05864 220 IELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFT 273 (276)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 22455666655444 6778887776532 2357899999999999999998764
No 52
>PLN02921 naphthoate synthase
Probab=99.95 E-value=4.5e-27 Score=224.41 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=133.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+|||+++ ++|++||+++|++|+++++++|++++|..++++|+++|++|+|+||+++||||+++
T Consensus 170 G~a~GGG~~LalacD~riA~~~--A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv 247 (327)
T PLN02921 170 GYAVGGGHILHMVCDLTIAADN--AVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVV 247 (327)
T ss_pred CEEecHHHHHHHhCCEEEEeCC--CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEe
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|. +++.+++.+++++|+..++...
T Consensus 248 ~~-------------~~l~~~a~~~a~~la~~~p~al------------------------------------------- 271 (327)
T PLN02921 248 PL-------------DELEGETVKWCREILRNSPTAI------------------------------------------- 271 (327)
T ss_pred CH-------------HHHHHHHHHHHHHHHccCHHHH-------------------------------------------
Confidence 98 8999999999999999887322
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL 213 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~ 213 (359)
..+|++++..... .......|.+.+..++.++|++||+.+|++||+|+|...
T Consensus 272 ~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~~~ 323 (327)
T PLN02921 272 RVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFSKF 323 (327)
T ss_pred HHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 2345555544332 233334445788889999999999999999999988643
No 53
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=5.7e-27 Score=217.59 Aligned_cols=150 Identities=23% Similarity=0.232 Sum_probs=136.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++ |++.++++++|..++++|+++|++++++||+++||||+++
T Consensus 106 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv 180 (257)
T PRK06495 106 GPALGAGLGLVASCDIIVASEN--AVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACL 180 (257)
T ss_pred CeeehhHHHHHHhCCEEEecCC--CEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceec
Confidence 6899999999999999999988 9999999999996 4567899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.|+.. .
T Consensus 181 ~~-------------~~~~~~a~~~a~~l~~~~~~a-------------------------------------------~ 204 (257)
T PRK06495 181 PP-------------EELMPEAMEIAREIASKSPLA-------------------------------------------T 204 (257)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 98 889999999999999988732 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....+++++++.|.+.+..++.|+|+++|+++|++||+|++.
T Consensus 205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~ 255 (257)
T PRK06495 205 RLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFK 255 (257)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCC
Confidence 345666777767889999999999999999999999999999999998863
No 54
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=5.1e-27 Score=216.83 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=133.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++ |++.+|++++|..++++|+++|++++++||+++||||+++
T Consensus 103 G~a~GgG~~Lal~cD~ria~~~--a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 177 (249)
T PRK07938 103 GFCLGGGIGLVGNADVIVASDD--ATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVV 177 (249)
T ss_pred CEEeehHHHHHHhCCEEEEeCC--CEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEe
Confidence 6899999999999999999988 9999999999986 4567899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.++++++++.++. +.
T Consensus 178 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 201 (249)
T PRK07938 178 PR-------------DQLDEAALEVARKIAAKDTR-------------------------------------------VI 201 (249)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 89999999999999998773 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTEC 208 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~ 208 (359)
..+|+.++.....++++.++.|.+.+..++.++|++|++++|++||+|
T Consensus 202 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 202 RAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 356677777667788999999999999999999999999999999875
No 55
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=5.9e-27 Score=221.72 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=132.8
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||+++
T Consensus 122 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv 199 (296)
T PRK08260 122 GPAVGVGATMTLAMDIRLASTA--ARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVH 199 (296)
T ss_pred CeeehHhHHHHHhCCEEEeeCC--CEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeec
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-ccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
|+ +++.+.+.+++++++.. ++..
T Consensus 200 ~~-------------~~l~~~a~~~a~~i~~~~~~~a------------------------------------------- 223 (296)
T PRK08260 200 PP-------------DELLPAARALAREIADNTSPVS------------------------------------------- 223 (296)
T ss_pred CH-------------HHHHHHHHHHHHHHHhcCChHH-------------------------------------------
Confidence 98 88999999999999985 5521
Q ss_pred HHHHHHHHHHhhc-cChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCC
Q psy9056 160 PLKILDVVRTGIE-KGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRL 213 (359)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~ 213 (359)
...+|+.++.... ....+....|.+.+..++.++|+++++.+|++||+|.|...
T Consensus 224 ~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 224 VALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 2234555555432 11223335677888899999999999999999999888543
No 56
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.94 E-value=4.3e-27 Score=216.93 Aligned_cols=147 Identities=31% Similarity=0.470 Sum_probs=137.0
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++
T Consensus 99 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 176 (245)
T PF00378_consen 99 GHAVGGGFELALACDFRIAAED--AKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVV 176 (245)
T ss_dssp SEEETHHHHHHHHSSEEEEETT--TEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEE
T ss_pred ccccccccccccccceEEeecc--cceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEc
Confidence 6799999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..|+.. .
T Consensus 177 ~~-------------~~l~~~a~~~a~~l~~~~~~a-------------------------------------------~ 200 (245)
T PF00378_consen 177 PD-------------EELDEEALELAKRLAAKPPSA-------------------------------------------L 200 (245)
T ss_dssp SG-------------GGHHHHHHHHHHHHHTSCHHH-------------------------------------------H
T ss_pred Cc-------------hhhhHHHHHHHHHHhcCCHHH-------------------------------------------H
Confidence 98 779999999999999987632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQ 205 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k 205 (359)
..+++.++......+++.++.|.+.+..++.++|++|++++|++|
T Consensus 201 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 201 RATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 256677777777889999999999999999999999999999987
No 57
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=9.2e-27 Score=217.45 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=126.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 115 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 192 (268)
T PRK07327 115 GPAVGAGLVAALLADISIAAKD--ARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAV 192 (268)
T ss_pred CeeeehhhHHHHhCCEEEecCC--CEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.++++++++.|+...+
T Consensus 193 ~~-------------~~l~~~a~~~a~~la~~~~~a~~------------------------------------------ 217 (268)
T PRK07327 193 DD-------------DELLPKALEVAERLAAGSQTAIR------------------------------------------ 217 (268)
T ss_pred CH-------------HHHHHHHHHHHHHHHcCCHHHHH------------------------------------------
Confidence 98 88999999999999998873322
Q ss_pred HHHHHHHHHhh---ccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGI---EKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~---~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
.+|+.++... ..++++.+..| ..++.++|+++++.+|++||+|+|.
T Consensus 218 -~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~~ 266 (268)
T PRK07327 218 -WTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDFP 266 (268)
T ss_pred -HHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCCC
Confidence 2334444321 12344444443 2467999999999999999998763
No 58
>PRK08321 naphthoate synthase; Validated
Probab=99.94 E-value=1.3e-26 Score=219.72 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=133.2
Q ss_pred CCCCchHHHHHHhcCEEEEe-cCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVV-KDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~-~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|.|+|||++|+++||||||+ ++ ++|++||+++|++|+++++.+|++++|..++++|++||++++|+||+++|||+++
T Consensus 144 G~a~GgG~~lalacD~ria~~~~--a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~v 221 (302)
T PRK08321 144 GWAAGGGHSLHVVCDLTLASREH--ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAV 221 (302)
T ss_pred CeeehHHHHHHHhCCEEEEecCC--CEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEe
Confidence 67999999999999999999 57 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
+|+ +++++.+.+++++|++.++...+
T Consensus 222 v~~-------------~~l~~~a~~~a~~la~~~~~a~~----------------------------------------- 247 (302)
T PRK08321 222 VPH-------------AELETEALEWAREINGKSPTAMR----------------------------------------- 247 (302)
T ss_pred eCH-------------HHHHHHHHHHHHHHHhCCHHHHH-----------------------------------------
Confidence 998 88999999999999998873222
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcC
Q psy9056 160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNR 212 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~ 212 (359)
.+|++++.... ...+....|.+.+..++.++|+++++.+|++||+|++..
T Consensus 248 --~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~ 297 (302)
T PRK08321 248 --MLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSD 297 (302)
T ss_pred --HHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 34455544333 334445568888899999999999999999999988753
No 59
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=1.4e-26 Score=214.34 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=131.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|+++++++++|..++++|+++|++++++||+++|||++++
T Consensus 106 G~a~GgG~~la~acD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (251)
T PRK06023 106 GLAIGIGTTIHLHCDLTFASPR--SLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIV 183 (251)
T ss_pred CceecHHHHHHHhCCEEEEeCC--CEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceee
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|. +++.+.+.+++++|+..|+...
T Consensus 184 ~~-------------~~l~~~a~~~a~~l~~~~~~a~------------------------------------------- 207 (251)
T PRK06023 184 DE-------------EAVEAETLKAAEELAAKPPQAL------------------------------------------- 207 (251)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence 98 8899999999999999887322
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQ 205 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k 205 (359)
..+|+.++.. ...+.+.++.|.+.+..++.++|+++++++|++|
T Consensus 208 ~~~K~~l~~~-~~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 208 QIARDLMRGP-REDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHhc-hhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 2345555544 2457888888999999999999999999999875
No 60
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=1e-26 Score=214.10 Aligned_cols=147 Identities=17% Similarity=0.108 Sum_probs=130.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 95 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~ 172 (243)
T PRK07854 95 GPAIGAGLQLAMACDLRVVAPE--AYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIG 172 (243)
T ss_pred CcccccHHHHHHhCCEEEEcCC--CEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccccc
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+. + .+.++++++++.|+.. .
T Consensus 173 ~~-------------~----~a~~~a~~l~~~~~~a-------------------------------------------~ 192 (243)
T PRK07854 173 TL-------------A----DAQAWAAEIAGLAPLA-------------------------------------------L 192 (243)
T ss_pred CH-------------H----HHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 53 3 6788999999887632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.. .+++++++.|.+.+..++.++|+++++.+|++||+|.+.
T Consensus 193 ~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 241 (243)
T PRK07854 193 QHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKFQ 241 (243)
T ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCCC
Confidence 2455556554 568889999999999999999999999999999987763
No 61
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=1.4e-26 Score=215.49 Aligned_cols=149 Identities=23% Similarity=0.228 Sum_probs=130.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccC-CCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM-LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~-~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|.|+|||++|+++||||||+++ ++|++||++ +|++|++|++++|++++|..++++++++|++++++||+++||||++
T Consensus 111 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 188 (262)
T PRK06144 111 GACVGGGAAIAAACDLRIATPS--ARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEV 188 (262)
T ss_pred CeeeehHHHHHHhCCEEEecCC--CEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCee
Confidence 6899999999999999999998 999999997 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
+|+ +++++.+.++++++++.|+....
T Consensus 189 v~~-------------~~l~~~a~~~a~~i~~~~~~a~~----------------------------------------- 214 (262)
T PRK06144 189 VED-------------AALDARADALAELLAAHAPLTLR----------------------------------------- 214 (262)
T ss_pred cCH-------------HHHHHHHHHHHHHHHhCCHHHHH-----------------------------------------
Confidence 998 89999999999999998873222
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 160 PLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
.+|+.++..... .++.+.+.+..++.++|+++++.+|++||+|++.
T Consensus 215 --~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~~ 260 (262)
T PRK06144 215 --ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKWK 260 (262)
T ss_pred --HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence 344455543333 3445567788899999999999999999988763
No 62
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.94 E-value=2.4e-26 Score=212.51 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=127.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|+ +++++|++++|..++++|++||++++++||+++|||++++
T Consensus 98 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~ 174 (251)
T TIGR03189 98 GQCLGGGLEVAAAGNLMFAAPD--AKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVA 174 (251)
T ss_pred CeeeeHHHHHHHhCCEEEEcCC--CEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceec
Confidence 6899999999999999999998 999999999999987 4678999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHH-HHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNT-ASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
|+ ++ ..+.++ +++++..|+..
T Consensus 175 ~~-------------~~--~~a~~~~a~~la~~~p~a------------------------------------------- 196 (251)
T TIGR03189 175 ED-------------PE--NAALAWFDEHPAKLSASS------------------------------------------- 196 (251)
T ss_pred Cc-------------HH--HHHHHHHHHHHHhCCHHH-------------------------------------------
Confidence 86 33 345555 68898887632
Q ss_pred HHHHHHHHHHhhccChhhHHH-HHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 160 PLKILDVVRTGIEKGPSAGYE-AEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
...+|+.++.....++++.+. .|.+.+..++.|+|++|++++|++||+|+|.
T Consensus 197 ~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 249 (251)
T TIGR03189 197 LRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWE 249 (251)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCC
Confidence 224556666666677777664 7778888999999999999999999998763
No 63
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.94 E-value=1.8e-26 Score=224.79 Aligned_cols=189 Identities=13% Similarity=0.069 Sum_probs=150.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|. .+++|++||++++++||+++||++++|
T Consensus 142 G~a~GGG~~Lal~cD~rvate~--a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vV 218 (401)
T PLN02157 142 GVTMGGGTGVSIPGTFRVATDR--TIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYI 218 (401)
T ss_pred CeEeehhHHHHHhCCEEEEeCC--CEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEe
Confidence 7899999999999999999998 9999999999999999999999999995 799999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-cccCCCCCC-------ch-------------hhhhhhhhhhhhh
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRTKPMIP-------DK-------------VLDVALKFEFVRN 139 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~~k~~~~-------~~-------------~~~~~~~~~~~~~ 139 (359)
|+ +++ +.+.+++.+++..++. +...|..+. .. -.+..+++..+.+
T Consensus 219 p~-------------~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~ 284 (401)
T PLN02157 219 RS-------------EEI-PVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEI 284 (401)
T ss_pred CH-------------hHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 98 666 4666777777665431 111221110 00 0111222233322
Q ss_pred H----HHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhc---ChhhHHHHHh-Hhhhh
Q psy9056 140 Q----IFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM---TPQSKGLMGL-FRAQT 206 (359)
Q Consensus 140 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~~~~~~~~a-f~~k~ 206 (359)
. ...|....+.....+++.+...++++++++...+++++++.|++...+++. ++||.|||++ .++|.
T Consensus 285 ~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd 359 (401)
T PLN02157 285 EAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKD 359 (401)
T ss_pred hhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcCCC
Confidence 1 245777777777778889999999999999999999999999999999885 7999999997 45565
No 64
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.94 E-value=3.6e-26 Score=212.27 Aligned_cols=150 Identities=36% Similarity=0.482 Sum_probs=133.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..++++|++||+.++++||+++|||++++
T Consensus 107 G~a~GgG~eLal~~D~ria~~~--a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (257)
T COG1024 107 GYALGGGLELALACDIRIAAED--AKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVV 184 (257)
T ss_pred ceEeechhhhhhcCCeEEecCC--cEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeee
Confidence 6899999999999999999998 99999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
++. +++.+.+.+++++++. ++. +.
T Consensus 185 ~~~------------~~l~~~a~~~a~~~a~-~~~-------------------------------------------a~ 208 (257)
T COG1024 185 PDA------------EELLERALELARRLAA-PPL-------------------------------------------AL 208 (257)
T ss_pred CCH------------HHHHHHHHHHHHHHcc-CHH-------------------------------------------HH
Confidence 852 6899999999999997 331 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECK 209 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~ 209 (359)
..++..++.....++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus 209 ~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 209 AATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 24556666665666889999999998888999999999999999 7654
No 65
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=4.8e-26 Score=215.40 Aligned_cols=151 Identities=19% Similarity=0.110 Sum_probs=132.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCC-CCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVML-GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~-Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|+|+|||++|+++||+|||+++ ++|++||+++ |+++ ++++ .+++|..++++|++||++++|+||+++||||++
T Consensus 121 G~a~GgG~~LalacD~ria~~~--A~f~~pe~~l~G~~~--~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~v 194 (298)
T PRK12478 121 GWCVGGASDYALCADIVIASDD--AVIGTPYSRMWGAYL--TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEA 194 (298)
T ss_pred cEEehhHHHHHHHCCEEEEcCC--cEEeccccccccCCc--hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence 6899999999999999999998 9999999997 9875 3333 356999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCc
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPA 159 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (359)
||+ +++++++.+++++++..|+...
T Consensus 195 v~~-------------~~l~~~a~~~a~~la~~~p~a~------------------------------------------ 219 (298)
T PRK12478 195 VPF-------------ERLEARVAEVATELARIPLSQL------------------------------------------ 219 (298)
T ss_pred cCH-------------HHHHHHHHHHHHHHHhCCHHHH------------------------------------------
Confidence 998 8999999999999999877322
Q ss_pred HHHHHHHHHHhhc-cChhhHHHHHHHHhhhhhcChhhH--------HHHHhHhhhhhhhhcCC
Q psy9056 160 PLKILDVVRTGIE-KGPSAGYEAEAEGFSQLAMTPQSK--------GLMGLFRAQTECKKNRL 213 (359)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~s~~~~--------~~~~af~~k~~~~~~~~ 213 (359)
..+|++++.... .+++++++.|.+.+..++.|+|++ ||+.+|++||+|.|..+
T Consensus 220 -~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~ 281 (298)
T PRK12478 220 -QAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDY 281 (298)
T ss_pred -HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 245666676655 468999999999999999999997 59999999999998865
No 66
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=4.7e-26 Score=210.33 Aligned_cols=149 Identities=18% Similarity=0.177 Sum_probs=132.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|+++++++++|. +++++++||++++++||+++||||+ +
T Consensus 98 G~a~GgG~~lal~cD~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~-~ 173 (248)
T PRK06072 98 GVTAGACIGIALSTDFKFASRD--VKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKI-S 173 (248)
T ss_pred CeeehHHHHHHHhCCEEEEcCC--CEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCccc-c
Confidence 6899999999999999999998 9999999999999999999999999996 8999999999999999999999995 3
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+ ++.+.+.+++++++..|+.. .
T Consensus 174 ~---------------~~~~~a~~~a~~la~~~~~a-------------------------------------------~ 195 (248)
T PRK06072 174 E---------------DPLSDAEEMANRISNGPFQS-------------------------------------------Y 195 (248)
T ss_pred c---------------hHHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 2 25678899999999887632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||+|++.
T Consensus 196 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 246 (248)
T PRK06072 196 IAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFK 246 (248)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCC
Confidence 245667777667888999999999999999999999999999999998763
No 67
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.94 E-value=2.5e-26 Score=213.63 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=134.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|+++++++++ ..++++|+++|++++++||+++||||+++
T Consensus 110 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 186 (260)
T PRK07827 110 GHVRAGGFGLVGACDIVVAGPE--STFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAA 186 (260)
T ss_pred CeeecchhhHHHhCCEEEEcCC--CEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccch
Confidence 6799999999999999999988 99999999999999999999999875 56899999999999999999999999986
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
++ +++.+.++++++++.++. +.
T Consensus 187 ~~---------------l~~~a~~~a~~la~~~~~-------------------------------------------a~ 208 (260)
T PRK07827 187 DD---------------VDAAVAALLADLRRGSPQ-------------------------------------------GL 208 (260)
T ss_pred HH---------------HHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 43 888999999999988763 23
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 210 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~ 210 (359)
..+|+.++.....++++.++.|.+.+..++.++++++++.+|++||+|++
T Consensus 209 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 209 AESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 35667777777788999999999999999999999999999999998765
No 68
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.93 E-value=1.5e-26 Score=222.60 Aligned_cols=191 Identities=17% Similarity=0.107 Sum_probs=146.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|+++.| ..+++|++||++++++||+++|||++++
T Consensus 109 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv 185 (342)
T PRK05617 109 GIVMGGGVGISAHGSHRIVTER--TKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFV 185 (342)
T ss_pred CEEEccHhHHhhhCCEEEEcCC--CEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceec
Confidence 6899999999999999999988 999999999999999999999999877 7899999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHH------------HHHhcCccccccCCCC--CC---------chhhhhhhhhhhh
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTA------------SQLASGKLKINRTKPM--IP---------DKVLDVALKFEFV 137 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~l~~~~~~~~~~k~~--~~---------~~~~~~~~~~~~~ 137 (359)
|+ +++.....+++ ..+.+...+... ..+ .. ..+.+.. .+.
T Consensus 186 ~~-------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~---~~l 248 (342)
T PRK05617 186 PS-------------ADLPALLDALISLRWDSGADVVDAALAAFATPAPA-SELAAQRAWIDECFAGDTVEDII---AAL 248 (342)
T ss_pred CH-------------HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCc-chhHHHHHHHHHHhCCCCHHHHH---HHH
Confidence 98 66655432222 112221111110 000 00 0011111 122
Q ss_pred hhHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHh-hh-hhhhhc
Q psy9056 138 RNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFR-AQ-TECKKN 211 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~-~k-~~~~~~ 211 (359)
++..-+++...+.+....++.+...+++++++....+++++++.|.+.+..++.++|+++|+++|+ +| |+|++.
T Consensus 249 ~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~ 324 (342)
T PRK05617 249 EADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWS 324 (342)
T ss_pred HhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCC
Confidence 222235666677777777788888999999998888999999999999999999999999999997 76 777764
No 69
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.93 E-value=3.2e-26 Score=211.61 Aligned_cols=145 Identities=19% Similarity=0.143 Sum_probs=132.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 104 G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 104 GAAVGAGLNLALAADVRIAGPK--ALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred CEeEchhHHHHHhCCEEEEcCC--CEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 6799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+ + +.+.+.+++++++..|+.. .
T Consensus 182 -~-------------~-l~~~a~~~a~~la~~~~~a-------------------------------------------~ 203 (249)
T PRK05870 182 -D-------------D-PVAAALELAAGPAAAPREL-------------------------------------------V 203 (249)
T ss_pred -h-------------h-HHHHHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 5 3 7789999999999988732 2
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHhhhhhcChhhHHHHHhHhhh
Q psy9056 161 LKILDVVRTGIE-KGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQ 205 (359)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k 205 (359)
..+|+.++.... .+++++++.|.+.+..++.++|++|++++|+++
T Consensus 204 ~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 204 LATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 356677777766 788999999999999999999999999999874
No 70
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.93 E-value=3.1e-26 Score=231.35 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=141.4
Q ss_pred CCCCchH-HHHHHhcCEEEEe-------cCCceEEeccccCCCCCCCcchHhHHhhh-cChHHHHHH--HhcCCCCCHHH
Q psy9056 1 MFAEPSL-ATVALACHYRIVV-------KDKKTGLGLPEVMLGLLPGAGGTQRLPKL-TALPNVLDM--TLTGKTLKADK 69 (359)
Q Consensus 1 ~~a~GgG-~~lalacD~ria~-------~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~-~g~~~a~~~--~ltg~~~~a~e 69 (359)
|+|+||| ++|+++||+|||+ ++ ++|++||+++|++|++|++++|+++ +|..+|++| ++||++++++|
T Consensus 379 G~a~GgG~~eLalacD~~ia~~~~~~~~~~--a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e 456 (550)
T PRK08184 379 GSCFAGTLAELALAADRSYMLALPDDNDPA--PAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADA 456 (550)
T ss_pred CceehhHHHHHHHHCChhhhcCCCCCCCCC--CEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH
Confidence 6899999 9999999999999 77 9999999999999999999999998 799999997 58999999999
Q ss_pred HHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy9056 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKV 149 (359)
Q Consensus 70 A~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
|+++||||+++|+ +++++++.++++++++.++.
T Consensus 457 A~~~GLv~~vv~~-------------~~l~~~a~~~a~~ia~~~p~---------------------------------- 489 (550)
T PRK08184 457 AEELGLVTAAPDD-------------IDWEDEVRIALEERASLSPD---------------------------------- 489 (550)
T ss_pred HHHcCCcccccCh-------------HHHHHHHHHHHHHHHhCCHH----------------------------------
Confidence 9999999999998 89999999999999998873
Q ss_pred HHhhCCCCCcHHHHHHHHHHhhccChhhH-HHHHHHHhhhhhcChhhHH---HHHhHhhhhhhhhc
Q psy9056 150 MKMSGGLYPAPLKILDVVRTGIEKGPSAG-YEAEAEGFSQLAMTPQSKG---LMGLFRAQTECKKN 211 (359)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~s~~~~~---~~~af~~k~~~~~~ 211 (359)
+...+|+.++.+...+++++ +..|.+.+..+++++|.+| |+.+|++||+|.|.
T Consensus 490 ---------a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~ 546 (550)
T PRK08184 490 ---------ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD 546 (550)
T ss_pred ---------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence 22356677888888999999 9999999999999999999 99999999999874
No 71
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.93 E-value=3.9e-26 Score=229.88 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=140.7
Q ss_pred CCCCchH-HHHHHhcCEEEE-------ecCCceEEeccccCCCCCCCcchHhHHhhhc-ChHHH--HHHHhcCCCCCHHH
Q psy9056 1 MFAEPSL-ATVALACHYRIV-------VKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT-ALPNV--LDMTLTGKTLKADK 69 (359)
Q Consensus 1 ~~a~GgG-~~lalacD~ria-------~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~-g~~~a--~~~~ltg~~~~a~e 69 (359)
|+|.||| ++|+++||+||+ +++ ++|++||+++|++|++|++++|++++ |..++ ++|++||++++|+|
T Consensus 375 G~a~GgG~~eLalacD~~ia~~~~~~~~~~--a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~e 452 (546)
T TIGR03222 375 GSCFAGTLAELAFAADRSYMLAFPDNNDPE--PAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEE 452 (546)
T ss_pred CeEeHHHHHHHHHhCceeeecCCCCCCCCC--CEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHH
Confidence 6899999 999999999999 887 99999999999999999999999998 99888 55999999999999
Q ss_pred HHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy9056 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKV 149 (359)
Q Consensus 70 A~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
|+++|||++++|+ +++.+++.++++++++.++..
T Consensus 453 A~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~p~a--------------------------------- 486 (546)
T TIGR03222 453 AERLGLVTAAPDD-------------IDWEDEIRIALEERASFSPDA--------------------------------- 486 (546)
T ss_pred HHHcCCcccccCc-------------hHHHHHHHHHHHHHHhcCHHH---------------------------------
Confidence 9999999999998 889999999999999988732
Q ss_pred HHhhCCCCCcHHHHHHHHHHhhccChhhH-HHHHHHHhhhhhcChhhHH---HHHhHhhhhhhhhc
Q psy9056 150 MKMSGGLYPAPLKILDVVRTGIEKGPSAG-YEAEAEGFSQLAMTPQSKG---LMGLFRAQTECKKN 211 (359)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~s~~~~~---~~~af~~k~~~~~~ 211 (359)
...+|+.++.....+++++ +..|.+.+..++.++|.+| |+.+|++||+|.|.
T Consensus 487 ----------~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~ 542 (546)
T TIGR03222 487 ----------LTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFD 542 (546)
T ss_pred ----------HHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCC
Confidence 2245677788888999999 9999999999999999999 99999999998773
No 72
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.93 E-value=4.5e-26 Score=221.98 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=141.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|. .+++|++||++++++||+++|||+++|
T Consensus 114 G~a~GgG~~LalacD~ria~~~--a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv 190 (379)
T PLN02874 114 GLVMGGGAGLMVPMKFRVVTEK--TVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFV 190 (379)
T ss_pred CeEEecHHHHHHhCCeEEEeCC--eEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEe
Confidence 6899999999999999999988 9999999999999999999999999884 899999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHH--------------HHHHhcCccc-cccCCCCCCchhhh------hhhhhhhhhh
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNT--------------ASQLASGKLK-INRTKPMIPDKVLD------VALKFEFVRN 139 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~l~~~~~~-~~~~k~~~~~~~~~------~~~~~~~~~~ 139 (359)
|+ +++.+.+.++ .++.....+. .......+ +.+.. ....+..+..
T Consensus 191 ~~-------------~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~f~~~~~~eii~al~~ 256 (379)
T PLN02874 191 PS-------------EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQ-SWINECFSKDTVEEIIKAFES 256 (379)
T ss_pred CH-------------HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHH-HHHHHHhCCCCHHHHHHHHhh
Confidence 98 6665421111 1111100000 00000000 00000 0111111110
Q ss_pred ----HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhc---ChhhHHHHHhHh-hh-hhhhh
Q psy9056 140 ----QIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM---TPQSKGLMGLFR-AQ-TECKK 210 (359)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~~~~~~~~af~-~k-~~~~~ 210 (359)
..-.|+.+.+.+...+++.+...++++++.+...+++++++.|.+....++. ++|++||+++|+ +| |+|+|
T Consensus 257 ~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w 336 (379)
T PLN02874 257 EASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKW 336 (379)
T ss_pred cccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCC
Confidence 0113455666677777778888999999998888999999999988888877 999999999997 88 77777
Q ss_pred c
Q psy9056 211 N 211 (359)
Q Consensus 211 ~ 211 (359)
.
T Consensus 337 ~ 337 (379)
T PLN02874 337 N 337 (379)
T ss_pred C
Confidence 4
No 73
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.93 E-value=1.1e-25 Score=208.71 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=128.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|+++ +.+|++++|..++++|+++|++++++||+++||||+++
T Consensus 105 G~a~GgG~~lala~D~~ia~~~--a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 181 (255)
T PRK07112 105 GKVNAGGIGFVAASDIVIADET--APFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYG 181 (255)
T ss_pred cEEEcchhHHHHcCCEEEEcCC--CEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceec
Confidence 6799999999999999999988 99999999999999865 56799999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ ++. .+.+++++++..++.. .
T Consensus 182 ~~-------------~~~--~~~~~a~~l~~~~p~a-------------------------------------------~ 203 (255)
T PRK07112 182 AN-------------SDT--LLRKHLLRLRCLNKAA-------------------------------------------V 203 (255)
T ss_pred Cc-------------HHH--HHHHHHHHHHhCCHHH-------------------------------------------H
Confidence 97 432 4677899998887632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
..+|+.++.. ..++.+.++.|.+.+..++.++|+++++.+|++||+|.+.
T Consensus 204 ~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 253 (255)
T PRK07112 204 ARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWE 253 (255)
T ss_pred HHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCC
Confidence 2345555543 4467889999999999999999999999999999987764
No 74
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.93 E-value=2.1e-25 Score=206.18 Aligned_cols=144 Identities=18% Similarity=0.157 Sum_probs=133.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++|||++++
T Consensus 103 G~a~GgG~~lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv 180 (249)
T PRK07110 103 GHAIGGGLVLGLYADIVVLSRE--SVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVL 180 (249)
T ss_pred CceechHHHHHHhCCEEEEeCC--CEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEe
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.++++++++.|+. +.
T Consensus 181 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 204 (249)
T PRK07110 181 PR-------------AEVLEKALELARSLAEKPRH-------------------------------------------SL 204 (249)
T ss_pred Ch-------------HHHHHHHHHHHHHHHhCCHH-------------------------------------------HH
Confidence 98 88999999999999998773 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhH
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLF 202 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af 202 (359)
..+|+.++......+++.++.|.+.+..++.++|++|++.+.
T Consensus 205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 205 VLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 356677777777889999999999999999999999999875
No 75
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.93 E-value=5.1e-25 Score=207.40 Aligned_cols=142 Identities=40% Similarity=0.589 Sum_probs=136.4
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
+++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+.+.+++..+.|.+++......+++++++++++.+
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999888888889999999999889
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhC-CCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVV-PPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+||||+||+.++|+.+|..+.+++ ++++||+||||+++++.++..+.+|+|++|+|||
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 9999999999999999999999999998 8999999999999999999999999999999997
No 76
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.93 E-value=1.8e-25 Score=217.11 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=146.8
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|. .+++|++||+++++++|+++||++++|
T Consensus 114 G~a~GGG~~Lal~~D~rvate~--a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv 190 (381)
T PLN02988 114 GIVMGGGAGVSVHGRFRIATEN--TVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFV 190 (381)
T ss_pred CeEeehhhHHhhcCCeEEEcCC--cEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEec
Confidence 7899999999999999999988 9999999999999999999999999996 689999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-ccccCCCCC-------C----------------chhhhhhhhhhh
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRTKPMI-------P----------------DKVLDVALKFEF 136 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~k~~~-------~----------------~~~~~~~~~~~~ 136 (359)
|+ +++.+.+.+++ +++..++ .+...+..+ + ..+.+.+..+..
T Consensus 191 ~~-------------~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~i~~~L~~ 256 (381)
T PLN02988 191 PS-------------TRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEEIISALER 256 (381)
T ss_pred CH-------------hHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 98 66777666666 4443332 111010000 0 112222222221
Q ss_pred hhh-HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhc---ChhhHHHHHh-Hhhhh
Q psy9056 137 VRN-QIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAM---TPQSKGLMGL-FRAQT 206 (359)
Q Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~~~~~~~~a-f~~k~ 206 (359)
... ..-.|..+.+.....+++.+...+++.++++...++.++++.|.+...+++. ++||.|||++ .++|.
T Consensus 257 ~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd 331 (381)
T PLN02988 257 EATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKD 331 (381)
T ss_pred hccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcCCC
Confidence 100 1235666677777777888999999999999999999999999999999998 7999999997 45564
No 77
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.92 E-value=1.9e-24 Score=200.52 Aligned_cols=147 Identities=23% Similarity=0.233 Sum_probs=128.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||||||+++ ++|++||+++|++|++|++++|++++|..++++|++||++++++||+++||||+++
T Consensus 103 G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv 180 (258)
T PRK06190 103 GAAVTGGLELALACDILIASER--ARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVV 180 (258)
T ss_pred CEeecHHHHHHHhCCEEEEeCC--CEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEec
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.++++++++.|+. +.
T Consensus 181 ~~-------------~~l~~~a~~~a~~la~~~~~-------------------------------------------a~ 204 (258)
T PRK06190 181 PH-------------DELLPRARRLAASIAGNNPA-------------------------------------------AV 204 (258)
T ss_pred CH-------------hHHHHHHHHHHHHHHcCCHH-------------------------------------------HH
Confidence 98 88999999999999998773 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcC---hhhHHHHHhHhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMT---PQSKGLMGLFRAQ 205 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s---~~~~~~~~af~~k 205 (359)
..+|+.++.....++++.++.|.+.+..++.| +...+....|..+
T Consensus 205 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 252 (258)
T PRK06190 205 RALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR 252 (258)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 35667777777788999999999999999988 3333433344443
No 78
>KOG1679|consensus
Probab=99.91 E-value=2.8e-25 Score=192.30 Aligned_cols=157 Identities=25% Similarity=0.366 Sum_probs=137.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|.|||++|+++||+|+++++ ++||++|++++|+|++|+|++|+|.+|...++++++|++.+++.||...||||++|
T Consensus 133 G~ALGGGLElALACDiRva~s~--akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv 210 (291)
T KOG1679|consen 133 GAALGGGLELALACDIRVAASS--AKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVV 210 (291)
T ss_pred chhcccchhhhhhccceehhhh--ccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHH
Confidence 6899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
..-+.+ |...+.+.++++++....|- +.
T Consensus 211 ~qneeg---------daa~~kal~lA~eilp~gPi-------------------------------------------av 238 (291)
T KOG1679|consen 211 EQNEEG---------DAAYQKALELAREILPQGPI-------------------------------------------AV 238 (291)
T ss_pred hcCccc---------cHHHHHHHHHHHHhccCCch-------------------------------------------hh
Confidence 762222 67888899999998765441 22
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~ 211 (359)
...+-+|..+...++..++..|..-+.+..-+.|-.||+.+|.+||+|.+.
T Consensus 239 r~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 239 RLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred hHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 234455677777888889999988888999999999999999999998774
No 79
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.91 E-value=5.4e-24 Score=207.41 Aligned_cols=190 Identities=15% Similarity=0.116 Sum_probs=142.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|++++|. .+++|++||+++++++|+++||+++++
T Consensus 147 G~amGGG~gLal~~D~rVate~--a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~~i~a~eA~~~GLa~~~v 223 (407)
T PLN02851 147 GITMGCGAGISIPGMFRVVTDK--TVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQKLNGVEMIACGLATHYC 223 (407)
T ss_pred CEEeeHHHHHHHhCCEEEEeCC--ceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCCcCCHHHHHHCCCceeec
Confidence 7899999999999999999998 9999999999999999999999999996 599999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccc-c------------cCCCCCC-----------chhhhhhhhhhh
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI-N------------RTKPMIP-----------DKVLDVALKFEF 136 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~------------~~k~~~~-----------~~~~~~~~~~~~ 136 (359)
|+ +.+ +.+.+.+.++...++.. . ....+.. +.+.+.+..+..
T Consensus 224 ~~-------------~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~ 289 (407)
T PLN02851 224 LN-------------ARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALEN 289 (407)
T ss_pred CH-------------hhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 98 333 22333333222211000 0 0000000 112222222222
Q ss_pred h-hhHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhh---cChhhHHHHHh-Hhhhhh
Q psy9056 137 V-RNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLA---MTPQSKGLMGL-FRAQTE 207 (359)
Q Consensus 137 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~s~~~~~~~~a-f~~k~~ 207 (359)
. ......|+...+.....+++.+...+++.++++...+++++++.|.++...++ .++||.|||++ .++|.+
T Consensus 290 ~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~ 365 (407)
T PLN02851 290 EAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDF 365 (407)
T ss_pred cccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCC
Confidence 1 00124677777777788888999999999999999999999999999999887 58999999997 555653
No 80
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.91 E-value=9e-24 Score=200.78 Aligned_cols=138 Identities=19% Similarity=0.240 Sum_probs=124.5
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
+++++|+|||+|.||.+||..++.+|++|++||++++.++.+...+.+.++...+.+. .. ....+++++++++ +.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-AP---GASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Ch---hhHHhhceecCCHHHH
Confidence 5689999999999999999999999999999999999999888888877777766653 22 2334678888888 56
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+++||+||||+||+.++|+.+|+++.+++++++||.||||+++++++++.+.+|+|++|+|||
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hff 143 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPF 143 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecC
Confidence 899999999999999999999999999999999999999999999999999999999999997
No 81
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.90 E-value=2.5e-23 Score=209.80 Aligned_cols=142 Identities=36% Similarity=0.552 Sum_probs=137.0
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
.++++|+|||+|.||.+||..++++|++|++||++++.++.+..+++..+++..+.|+++....+..+++++.+++++++
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
.+||+||||+||+.++|+.+|.++...+++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff 146 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFF 146 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 82
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.90 E-value=2.2e-23 Score=209.73 Aligned_cols=142 Identities=35% Similarity=0.561 Sum_probs=136.1
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
..+++|+|||+|.||.+||..++++|++|++||++++.++.+...++..++...+.|.+++...+..+++++++++++++
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l 82 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL 82 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999998888999999999999888
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+||+|+||+.++|+.+|.++.+++++++||+||||+++++++++.+..|.|++|+|||
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf 144 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFF 144 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 83
>KOG2304|consensus
Probab=99.90 E-value=5e-24 Score=186.60 Aligned_cols=142 Identities=32% Similarity=0.548 Sum_probs=132.2
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHH-----Hhhhccccccc
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR-----DRYLASLVGTL 292 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~i~~~~ 292 (359)
..++.|+|||+|.||++||+..+.+|++|+++|++++.+.++.+.|.+.+.+..+++..+.... ...+++|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999999999999999999999999999999888877765443 55678999999
Q ss_pred Cc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 293 SY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 293 ~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+. +.++++|+|||++.|+.++|+.+|++|...+++++|++||||++.+++++....+|.||.|+|||
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFf 156 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFF 156 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeecc
Confidence 98 56899999999999999999999999999999999999999999999999999999999999998
No 84
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.90 E-value=5.9e-23 Score=192.72 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=126.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++|++||+.++++||+++||||+++
T Consensus 130 G~a~GgG~~LalacD~ria~~~--a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv 207 (287)
T PRK08788 130 GDALGGGFEAALSHHTIIAERG--AKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLV 207 (287)
T ss_pred CeeehHHHHHHHhCCEEEecCC--CEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEec
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..+.. +
T Consensus 208 ~~-------------~el~~~a~~~a~~ia~~~~~--------------------------------------------~ 230 (287)
T PRK08788 208 ED-------------GQGEAAVRTFIRKSKRKLNG--------------------------------------------W 230 (287)
T ss_pred Cc-------------hHHHHHHHHHHHHHhcCccH--------------------------------------------H
Confidence 98 88999999999999976321 1
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcCh-hhHHHHHhHhhhhhhhhc
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTP-QSKGLMGLFRAQTECKKN 211 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~-~~~~~~~af~~k~~~~~~ 211 (359)
..+++..+.....++++.++.|......++++. ...+-|..|..-.+.+.+
T Consensus 231 ~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (287)
T PRK08788 231 RAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVRAQNRRVG 282 (287)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhcc
Confidence 123333444445678888888877776655544 457778888776664443
No 85
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.89 E-value=3.7e-22 Score=188.32 Aligned_cols=142 Identities=30% Similarity=0.393 Sum_probs=129.2
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHH-HHhhhcccccccCcC-
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD-RDRYLASLVGTLSYD- 295 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~- 295 (359)
|++++|+|||+|.||.++|..++++|++|++||++++.++.+.+.++..++...+.+.++... .....++++++++++
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 357899999999999999999999999999999999999999888888888888877776655 555667888888984
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
.+++||+||+|+|++.++|+.+++++.+++++++||++++|+++++++++.+.+|+|++|+|||
T Consensus 81 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~ 144 (287)
T PRK08293 81 AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFA 144 (287)
T ss_pred HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCC
Confidence 6899999999999999999999999999999999999999999999999999999999999996
No 86
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.88 E-value=3.8e-22 Score=187.75 Aligned_cols=141 Identities=40% Similarity=0.671 Sum_probs=131.9
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
.|++|+|||+|.||.++|..++++|++|++||++++.++.+...++..++...+.+.++.........+++++++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 47899999999999999999999999999999999999998888888888888988888777777778888888887799
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+||+||+|+|++..+|+.+++++.++++++++|+|++++++++.+++.+++|.|++++||+
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~ 142 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFF 142 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 87
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.88 E-value=4.8e-22 Score=187.97 Aligned_cols=142 Identities=35% Similarity=0.559 Sum_probs=131.0
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
+++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+...+....+.+.++.........+++++++++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 56789999999999999999999999999999999999999888888888888888888777777777888888888889
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+||+|+|++.++|+.+++++.+.++++++|+|+||+++++.+++.+.+|.|++|+|||
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~ 143 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFM 143 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeecc
Confidence 99999999999999999999999999999999999999999999999999889999999996
No 88
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.88 E-value=6e-22 Score=187.23 Aligned_cols=142 Identities=35% Similarity=0.560 Sum_probs=127.2
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH---hHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT---GLDGAVKRKKMSALDRDRYLASLVGTLSY 294 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (359)
|++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+++ .++...+.+.++....+...+++.+++++
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 357899999999999999999999999999999999999887776654 35556666777777777777888888888
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+.+++||+||+|+|++.++|+.+++++.+++++++||+|++|+++++++++.+..++|++|+|||
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~ 145 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWF 145 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecC
Confidence 77899999999999999999999999999999999999999999999999999999999999997
No 89
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.88 E-value=9.7e-22 Score=186.18 Aligned_cols=142 Identities=35% Similarity=0.583 Sum_probs=132.2
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
+++++|+|||+|.||.+||..++++|++|++||++++.++...+.+++.++...+.+.++.......++++.++++.+.+
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 35789999999999999999999999999999999999999999999889999988988887777777788888888889
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+||+|+|+++++|..+++++.+++++++||+|++|+++++++++.+..+.+++|+||+
T Consensus 82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~ 143 (295)
T PLN02545 82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFM 143 (295)
T ss_pred CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 90
>KOG1684|consensus
Probab=99.88 E-value=1.1e-22 Score=188.69 Aligned_cols=202 Identities=18% Similarity=0.159 Sum_probs=162.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+.||||++|..+--||||+|+ +.|.|||+.||++|++|++++++|+.| +...++.+||+++++.+|+..||.+|+|
T Consensus 144 GITMGgG~GLS~hg~fRVATer--T~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv 220 (401)
T KOG1684|consen 144 GITMGGGVGLSVHGRFRVATER--TVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYV 220 (401)
T ss_pred ceeecCCcceeecceeEEeecc--ceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhcc
Confidence 6899999999999999999998 999999999999999999999999999 8899999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHH----HHHHHHHHHHHhcCccccccCCCCCC---------chhhhhhhhhhhhh--hHHHHHH
Q psy9056 81 EPLGPGLNHPEERTMEYL----EEVAVNTASQLASGKLKINRTKPMIP---------DKVLDVALKFEFVR--NQIFGKA 145 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~l~~~~~~~~~~k~~~~---------~~~~~~~~~~~~~~--~~~~~~~ 145 (359)
|+ +.|+.|+|++.-.+ ...+.+...+..+.+.+......... ..|.+.+..+.-+. +..-.|+
T Consensus 221 ~S--~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewa 298 (401)
T KOG1684|consen 221 PS--EKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWA 298 (401)
T ss_pred ch--hhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHH
Confidence 98 57888887665112 12333444444433211111000000 22445555443344 7788899
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHh-Hhhhhh
Q psy9056 146 KEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGL-FRAQTE 207 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~a-f~~k~~ 207 (359)
.+++.+....++.+...+.+.++.+..+++++++.+|++.......++||.||+++ .++|..
T Consensus 299 k~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~ 361 (401)
T KOG1684|consen 299 KETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQ 361 (401)
T ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCc
Confidence 99999999999999999999999999999999999999999999999999999997 556654
No 91
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.87 E-value=4.6e-22 Score=180.67 Aligned_cols=100 Identities=24% Similarity=0.454 Sum_probs=96.4
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|++|++|++.+|++++|..++++++++|++++++||+++||+|+++
T Consensus 108 G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 185 (222)
T PRK05869 108 GYALGAGLTLALAADWRVSGDN--VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMV 185 (222)
T ss_pred CEeecHHHHHHHhCCEEEecCC--CEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEee
Confidence 6899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 115 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 115 (359)
|+ +++.+.+.++++++++.|+.
T Consensus 186 ~~-------------~~l~~~a~~~a~~ia~~~~~ 207 (222)
T PRK05869 186 AP-------------DDVYDAAAAWARRFLDGPPH 207 (222)
T ss_pred Cc-------------hHHHHHHHHHHHHHHcCCHH
Confidence 98 88999999999999998873
No 92
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.87 E-value=6.1e-22 Score=180.86 Aligned_cols=129 Identities=22% Similarity=0.229 Sum_probs=112.8
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||||||+++ +++|++||+++|++|+++++.++++++|...+++|+++|++++++||+++||||+++
T Consensus 100 G~a~GgG~~lal~~D~rva~~~-~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv 178 (229)
T PRK06213 100 GHAIAKGAFLLLSADYRIGVHG-PFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVV 178 (229)
T ss_pred CeeeHHHHHHHHhCCeeeEecC-CcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceecc
Confidence 6899999999999999999975 489999999999998888888999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++.+.+.+++++++..++.. .
T Consensus 179 ~~-------------~~l~~~a~~~a~~la~~~~~a-------------------------------------------~ 202 (229)
T PRK06213 179 PP-------------EQLLARAQAAARELAGLNMGA-------------------------------------------H 202 (229)
T ss_pred Ch-------------HHHHHHHHHHHHHHhcCCHHH-------------------------------------------H
Confidence 98 889999999999999887632 2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGF 186 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~ 186 (359)
..+|+.++......++++++.|.+.+
T Consensus 203 ~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 203 AATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 34566666666667777777777654
No 93
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.87 E-value=9e-22 Score=185.48 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=116.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++|||||++++ ++|++||+++|+ |+ .+++++++++|..++++|++||++++++||+++||||++|
T Consensus 127 G~a~GgG~~lalacD~ria~e~--a~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv 202 (288)
T PRK08290 127 GACIAGGLMLAWVCDLIVASDD--AFFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVV 202 (288)
T ss_pred CEeeHHHHHHHHhCCEEEeeCC--CEecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEee
Confidence 6899999999999999999998 999999999999 44 4567789999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ +++++.+.+++++++..|+...
T Consensus 203 ~~-------------~~l~~~a~~~a~~la~~~~~a~------------------------------------------- 226 (288)
T PRK08290 203 PR-------------DELEAETLELARRIAAMPPFGL------------------------------------------- 226 (288)
T ss_pred CH-------------HHHHHHHHHHHHHHHhCCHHHH-------------------------------------------
Confidence 98 8899999999999999887322
Q ss_pred HHHHHHHHHhhcc-ChhhHHHHHHHHhhhhh-cChh
Q psy9056 161 LKILDVVRTGIEK-GPSAGYEAEAEGFSQLA-MTPQ 194 (359)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~-~s~~ 194 (359)
..+|+.++..... ++++++..|.+.....+ ++++
T Consensus 227 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 227 RLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 2455666665554 68999999999988877 6765
No 94
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.86 E-value=5.5e-21 Score=180.43 Aligned_cols=140 Identities=35% Similarity=0.512 Sum_probs=128.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
+++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+...++...+.+.++.........++++++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 578999999999999999999999999999999999999888887777777777888877777777888888888 5789
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
+||+||+|+|++.++|+.++.++.+++++++||++++|+++++++++.+..+.|++|+|||
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~ 141 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF 141 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 95
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.86 E-value=2.9e-21 Score=183.54 Aligned_cols=181 Identities=14% Similarity=0.083 Sum_probs=126.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++|||++++
T Consensus 133 G~AiGGGleLALaCDlrIAse~--A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VV 210 (360)
T TIGR03200 133 GMRIGGGQEIGMAADFTIAQDL--ANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVV 210 (360)
T ss_pred CEeeeHHHHHHHhCCEEEEcCC--CEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheec
Confidence 6799999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHH------------HHHHHHHHHHHhcCccc--ccc-CCCCCCchhhhhhhhhhhh-hhHHHHH
Q psy9056 81 EPLGPGLNHPEERTMEYL------------EEVAVNTASQLASGKLK--INR-TKPMIPDKVLDVALKFEFV-RNQIFGK 144 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~l~~~~~~--~~~-~k~~~~~~~~~~~~~~~~~-~~~~~~~ 144 (359)
|+ +++ ++.+.++.+.+...++. ..+ .|.++ ..... ....-..
T Consensus 211 p~-------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~---------~~~~~~~~~l~~~ 268 (360)
T TIGR03200 211 PA-------------LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELI---------KQGTIDLSLLDEA 268 (360)
T ss_pred Cc-------------hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHH---------hcccchHhHHHHH
Confidence 98 455 56666777777666553 111 22211 00001 1111122
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhh
Q psy9056 145 AKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT 206 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~ 206 (359)
..+..++.....+-..-++++.++......+...-......+.--+. -+.++|+++|-++.
T Consensus 269 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 329 (360)
T TIGR03200 269 VEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM-NEARTGFRAFNEGK 329 (360)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc-cccchhhHHHhccc
Confidence 12222233332333334555666655555454444444444544444 88999999999953
No 96
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.83 E-value=2.6e-20 Score=176.87 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=89.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|+|||++|+++||+|||+++ ++|++||+++|.+|+. ..+++++|.++|++|++||++++++||+++||||+++
T Consensus 136 G~a~GgG~~lalacD~~ias~~--a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv 210 (302)
T PRK08272 136 GYCVAGGTDIALHCDQVIAADD--AKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAV 210 (302)
T ss_pred cEeehhhHHHHHhCCEEEEeCC--CEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceec
Confidence 6899999999999999999998 9999999998666653 3578899999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 115 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 115 (359)
|+ +++++.+.+++++|+..|+.
T Consensus 211 ~~-------------~~l~~~a~~la~~ia~~~~~ 232 (302)
T PRK08272 211 PP-------------EELDERTERLVERIAAVPVN 232 (302)
T ss_pred CH-------------HHHHHHHHHHHHHHHcCCHH
Confidence 98 89999999999999998874
No 97
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.82 E-value=2.9e-19 Score=170.25 Aligned_cols=141 Identities=26% Similarity=0.341 Sum_probs=128.5
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
+|++|+|||+|.||++||..++++|++|++||++++.++.+...++..++...+.+.++........+++.+++++ +.+
T Consensus 1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 3578999999999999999999999999999999999999888888888888888887777777777888888888 468
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+||+|+|++.++++.+++++.+.++++++|.|++++++++++++.+..+.++++.||+
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~ 142 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPI 142 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecC
Confidence 99999999999999999999999999889999999999999999999999999999999996
No 98
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=3.4e-19 Score=169.71 Aligned_cols=129 Identities=24% Similarity=0.296 Sum_probs=120.1
Q ss_pred chHHHHHHHHHCCCeeEEecCCHH-------HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC--c-CCCCCc
Q psy9056 231 MGAGIAHVTVDKGYNTIVKDSFEK-------GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS--Y-DPFKNA 300 (359)
Q Consensus 231 mG~~iA~~l~~~G~~V~l~d~~~~-------~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~-~~l~~a 300 (359)
||.+||..++.+|++|++||++++ .++.+.+.+...++...+.|.+++......+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 466788889999999999999999888888999998765 3 568999
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
|+||||+||+.++|+.+|.++.+.+++++||+||||+++++++++.+.+|+|++|+|||
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~ 139 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWL 139 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 99
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.81 E-value=1.1e-19 Score=166.99 Aligned_cols=101 Identities=30% Similarity=0.273 Sum_probs=90.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHH-HHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV-LDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a-~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|.|+|||++|+++||+|||+++ +++|++||+++|++++.+++.++++++|..++ ++|+++|++++++||+++||||++
T Consensus 103 G~a~GgG~~lalacD~ria~~~-~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~v 181 (239)
T PLN02267 103 GHASAAGFILALSHDYVLMRKD-RGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSA 181 (239)
T ss_pred CcchHHHHHHHHHCCEEEecCC-CCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCccee
Confidence 6899999999999999999853 27999999999997444558899999999999 699999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 114 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 114 (359)
+|+. +++.+.+.++++++++.++
T Consensus 182 v~~~------------~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 182 HDSA------------EETVEAAVRLGEELAARKW 204 (239)
T ss_pred cCCH------------HHHHHHHHHHHHHHhhccC
Confidence 9852 6799999999999998755
No 100
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.80 E-value=3.1e-20 Score=161.35 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=127.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|||+|||-.|-+.||+.||+++ ++|+....++|-+-++.++..|.|++|..+|+|+.+.++.|+|+||++||+||.+|
T Consensus 125 G~AiGGGhvlhvvCDLTiAa~n--A~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vv 202 (282)
T COG0447 125 GYAIGGGHVLHVVCDLTIAADN--AIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVV 202 (282)
T ss_pred eEeccCccEEEEEeeeeeehhc--chhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeec
Confidence 6899999999999999999999 99999999999998888899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|- ++|++++.+|++++.+.+|...+.
T Consensus 203 p~-------------~~LE~e~v~W~~E~l~kSP~AlR~----------------------------------------- 228 (282)
T COG0447 203 PH-------------ADLEKETVQWAREMLAKSPTALRM----------------------------------------- 228 (282)
T ss_pred cH-------------HHHHHHHHHHHHHHHhcChHHHHH-----------------------------------------
Confidence 98 999999999999999988744331
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCC
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGK 215 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~ 215 (359)
++.--++...++.-..+..-+...-.+.+++.+||..+|.+||+|.|++++.
T Consensus 229 ---LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~~fp~ 280 (282)
T COG0447 229 ---LKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFSKFPR 280 (282)
T ss_pred ---HHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCChHhcCC
Confidence 1111111122222222222333445568999999999999999999987653
No 101
>KOG0016|consensus
Probab=99.80 E-value=3e-19 Score=159.72 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=137.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|=|+|-|+.+.--||+++|+|. ++|-+|++.+|..|.+|+++.+|.++|...|.||++.|++++|+||++.|||++++
T Consensus 116 GPAIGlgasil~lcD~V~A~Dk--a~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif 193 (266)
T KOG0016|consen 116 GPAIGLGASILPLCDYVWASDK--AWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIF 193 (266)
T ss_pred CCccchhhHHhhhhheEEeccc--eEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhc
Confidence 4489999999999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+. +.+.+.+...++++++.++. +.
T Consensus 194 ~~-------------~tf~~~v~~~ikq~s~l~p~-------------------------------------------sl 217 (266)
T KOG0016|consen 194 PA-------------ETFNEEVLKKIKQYSKLSPE-------------------------------------------SL 217 (266)
T ss_pred Ch-------------HHHHHHHHHHHHHHhcCCHH-------------------------------------------HH
Confidence 98 89999999999999997763 23
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTE 207 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~ 207 (359)
...|+++|.+....+..+.+.|++.....|.|+|..+.+..|+.+..
T Consensus 218 ~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~~ 264 (266)
T KOG0016|consen 218 LGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKKR 264 (266)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhcccc
Confidence 35667788888889999999999999999999999999999988754
No 102
>KOG1681|consensus
Probab=99.78 E-value=3.6e-19 Score=155.83 Aligned_cols=151 Identities=18% Similarity=0.159 Sum_probs=134.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcC-hHHHHHHHhcCCCCCHHHHHHcCCccee
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA-LPNVLDMTLTGKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g-~~~a~~~~ltg~~~~a~eA~~~Glv~~~ 79 (359)
|.|+|||+.|..|||+|+++++ +.|+.-|+.+|+.-+.|...+||..+| ...++++.+|++.|+|+||++.|||+++
T Consensus 135 g~CiGagvDLiTAcDIRycsqD--AffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrv 212 (292)
T KOG1681|consen 135 GACIGAGVDLITACDIRYCSQD--AFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRV 212 (292)
T ss_pred hhhccccccceeecceeeeccc--ceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhh
Confidence 5789999999999999999999 999999999999999999999999999 6899999999999999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-ccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q psy9056 80 VEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP 158 (359)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (359)
+|+. ++++..+..+|..|+..+| .+..
T Consensus 213 f~dk------------~~ll~~~l~mA~~Ia~KSpvaVqg---------------------------------------- 240 (292)
T KOG1681|consen 213 FPDK------------EELLNGALPMAELIASKSPVAVQG---------------------------------------- 240 (292)
T ss_pred cCCH------------HHHHhhhHHHHHHhccCCceeeec----------------------------------------
Confidence 9985 8999999999999999877 3322
Q ss_pred cHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhh
Q psy9056 159 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECK 209 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~ 209 (359)
+++.+..+++.+.++.+..=.-.....+.|+|..+++.+-.+|+++.
T Consensus 241 ----TK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 241 ----TKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred ----hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 34555777788888888888777778888999999999888877543
No 103
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.77 E-value=1.2e-18 Score=175.76 Aligned_cols=107 Identities=26% Similarity=0.415 Sum_probs=97.8
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccC-CCCCCCcchHhHHh--hhcChHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVD 77 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~-~Gi~p~~g~~~~l~--~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~ 77 (359)
|+|+|||++|+++||+||++++.+++|++||++ +|++|++|++.+++ +.+|..+|++|++||++++++||+++||||
T Consensus 128 G~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~ 207 (546)
T TIGR03222 128 GTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVD 207 (546)
T ss_pred CEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCce
Confidence 689999999999999999998533799999997 99999999999997 689999999999999999999999999999
Q ss_pred eecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCC
Q psy9056 78 QLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTK 120 (359)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k 120 (359)
+++|+ +++.+.+.+++.+|++.|+.+...|
T Consensus 208 ~vv~~-------------~~l~~~a~~lA~~la~~~p~~~~~~ 237 (546)
T TIGR03222 208 EVVKP-------------SQFDAAIAERAAELAAQSDRPADAK 237 (546)
T ss_pred EEeCh-------------HHHHHHHHHHHHHHHhCCCCCcCCC
Confidence 99998 8899999999999999888544433
No 104
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.76 E-value=2.7e-18 Score=173.86 Aligned_cols=105 Identities=25% Similarity=0.383 Sum_probs=97.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccC-CCCCCCcchHhHHh--hhcChHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVD 77 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~-~Gi~p~~g~~~~l~--~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~ 77 (359)
|.|+|||++|+++|||||++++.+++|++||++ +|++|++|++++++ +.+|..++++|++||++++++||+++||||
T Consensus 132 G~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd 211 (550)
T PRK08184 132 GTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVD 211 (550)
T ss_pred CEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCcc
Confidence 679999999999999999997655899999997 99999999999998 779999999999999999999999999999
Q ss_pred eecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc
Q psy9056 78 QLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 118 (359)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 118 (359)
+++|+ +++.+.+.+++.+|+..++....
T Consensus 212 ~vv~~-------------d~l~~~a~~~A~~ia~~~~~~~~ 239 (550)
T PRK08184 212 EVVKP-------------SKFDAKVAERAAELAAASDRPAD 239 (550)
T ss_pred EeeCH-------------HHHHHHHHHHHHHHHhCCCCCCC
Confidence 99998 89999999999999999885443
No 105
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.75 E-value=1.8e-17 Score=167.41 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=110.4
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
.+++|+|||+|.||++||..|+++|++|++||++++.++.....+........ .+... .....+++++++++ +.+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHh
Confidence 35799999999999999999999999999999999988765443322221111 01100 01112356777888 578
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+||+|+|++.++|+.+|.++.+++++++||.|+||+++++.+++.+..+.++++.|||
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~ 140 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPY 140 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 106
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.75 E-value=2.3e-17 Score=157.35 Aligned_cols=136 Identities=32% Similarity=0.487 Sum_probs=111.2
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF 297 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l 297 (359)
++++|+|||+|.||.+||..++++|++|++||++++.++.+.+.+........+.+. ......+++++++.+ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 578999999999999999999999999999999999988877654432221111110 012234566677774 58
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
++||+||+|+|++.+.+..++.++.+.++++++|+|++++++++++++.+..+.+++++||+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~ 139 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFF 139 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccC
Confidence 99999999999999999999999999999999999999999999999999888999999996
No 107
>KOG1682|consensus
Probab=99.74 E-value=3.2e-18 Score=147.48 Aligned_cols=151 Identities=14% Similarity=0.191 Sum_probs=126.1
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|+|..+||.|...||+++++++ ++|..|.+.+|++.+.-|. .|.|.++...+++|++||.+++++||+..||++++|
T Consensus 134 G~AaAAGcQLVaSCD~vVa~k~--SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvV 210 (287)
T KOG1682|consen 134 GYAAAAGCQLVASCDMVVATKN--SKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVV 210 (287)
T ss_pred chhhhccceEEEeeeEEEEecC--ccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcC
Confidence 6789999999999999999988 9999999999998776655 488999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccccCCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 160 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+ ++|+.++.++.++|-..+..+.. .-
T Consensus 211 p~-------------~el~~e~~~i~~~i~~~srav~s-------------------------lg--------------- 237 (287)
T KOG1682|consen 211 PA-------------EELDKEIEEITNAIKAKSRAVIS-------------------------LG--------------- 237 (287)
T ss_pred CH-------------HHHHHHHHHHHHHHhhhHHHHHH-------------------------HH---------------
Confidence 99 99999999999998776653221 11
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhh
Q psy9056 161 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 210 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~ 210 (359)
++.......++-.+++....+.+-+-++=.|.+|||.+|++||.|.|
T Consensus 238 ---k~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 238 ---KEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred ---HHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 11122233345557777777788888899999999999999999876
No 108
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.74 E-value=7.9e-18 Score=149.59 Aligned_cols=94 Identities=43% Similarity=0.668 Sum_probs=89.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceec
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~ 80 (359)
|.|.|+|++++++|||||++++ ++|++||+++|++|+.|++.+|++++|...+.+++++|+.++++||+++||+++++
T Consensus 102 G~a~g~G~~la~~~D~~i~~~~--~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~ 179 (195)
T cd06558 102 GAALGGGLELALACDIRIAAED--AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVV 179 (195)
T ss_pred CeeecHHHHHHHhCCEEEecCC--CEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence 6789999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9056 81 EPLGPGLNHPEERTMEYLEEVAVNTASQL 109 (359)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 109 (359)
++ +++.+.+.++++++
T Consensus 180 ~~-------------~~l~~~a~~~a~~~ 195 (195)
T cd06558 180 PD-------------EELLAAALELARRL 195 (195)
T ss_pred Ch-------------hHHHHHHHHHHhhC
Confidence 98 88999888888763
No 109
>KOG2305|consensus
Probab=99.69 E-value=4.3e-17 Score=143.34 Aligned_cols=141 Identities=26% Similarity=0.382 Sum_probs=124.5
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCCh-HHHHhhhcccccccCc-C
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA-LDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~-~ 295 (359)
|.+.||+|+|.|.+|+++|..|+..||+|.+||+.++.+.-+...++..+...-+.|.+.. ..+++.+..+..++++ |
T Consensus 1 ms~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 1 MSFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred CCccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 4578999999999999999999999999999999999999988888877776666543321 2345666788889998 6
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~ 358 (359)
.++++=.|.||+||++++|+.++++|+..+.+.+|+.|+||+++++.+.+.+-++++++..|+
T Consensus 81 ~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHP 143 (313)
T KOG2305|consen 81 LVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHP 143 (313)
T ss_pred HHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999996
No 110
>KOG1683|consensus
Probab=99.58 E-value=8.1e-15 Score=137.77 Aligned_cols=129 Identities=45% Similarity=0.683 Sum_probs=123.4
Q ss_pred chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCC
Q psy9056 231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFED 310 (359)
Q Consensus 231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~ 310 (359)
||.+||..+..+|++|++.|.|...++.....+...+......+.+++........+++.+.|+..++++|+|++++.++
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999988888888899999999999888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecCC
Q psy9056 311 INIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 311 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~~ 359 (359)
.++|++++++|.+.+++++|+.+|+|++++..+.+.++.|++++|+|||
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f 129 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF 129 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc
Confidence 9999999999999999999999999999999999999999999999997
No 111
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.38 E-value=6.7e-13 Score=114.20 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=79.9
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA 300 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a 300 (359)
||+|||+|+||.++|..++.+|++|++|+++++.++...+.-.+. .+... .....++.+++|+ ++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~--~~~~~--------~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNP--KYLPG--------IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSET--TTSTT--------SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCC--CCCCC--------cccCcccccccCHHHHhCcc
Confidence 799999999999999999999999999999998877665422110 00110 1122467788888 568999
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
|+||+++|.+. .++++++|.++++++++|++.+.|+
T Consensus 71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999888 7899999999999999999998887
No 112
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.35 E-value=4e-12 Score=119.52 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=84.5
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD 301 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD 301 (359)
+|+|||+|.||.++|..|.++|++|++||++++.++.+.. .+..+ ..+++.+.++++|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence 7999999999999999999999999999999987665432 11110 1223345678999
Q ss_pred EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056 302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~ 358 (359)
+||+|+|.+. ...+++++.++++++++|. .+++++.+.+........+++++|+
T Consensus 60 lVilavp~~~--~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HP 113 (279)
T PRK07417 60 LVILALPIGL--LLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHP 113 (279)
T ss_pred EEEEcCCHHH--HHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCC
Confidence 9999999766 4578899999888888775 4555666655555444557999996
No 113
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.35 E-value=2.4e-12 Score=111.39 Aligned_cols=103 Identities=22% Similarity=0.223 Sum_probs=73.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
|++|+|||.|.||..||..|.++||+|++||+++++.++..+ ......++. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~------------------------~g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE------------------------AGAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH------------------------TTEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH------------------------hhhhhhhhhhhHhh
Confidence 689999999999999999999999999999999988776432 123445555 5678
Q ss_pred CccEEEEcccCCHHHHHHHHHH--HHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056 299 NADMVIEAVFEDINIKHQVIKE--IEAVVPPHCVVATNTSAIPI--TKIAAAS 347 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~--~~l~~~~ 347 (359)
++|+||.|+|++.+ .++++.. +.+.+.++++|+..++.-+- .++++.+
T Consensus 57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~ 108 (163)
T PF03446_consen 57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERL 108 (163)
T ss_dssp HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHH
T ss_pred cccceEeecccchh-hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhh
Confidence 89999999997665 5666766 88888999988866654432 2454444
No 114
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.33 E-value=3e-12 Score=113.28 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCc--------------chHhHHhhhcCh--HHHHHHHhcCCC
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGA--------------GGTQRLPKLTAL--PNVLDMTLTGKT 64 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~--------------g~~~~l~~~~g~--~~a~~~~ltg~~ 64 (359)
|.|+|||+.|+++||+||++++ ++|+.+++..+..+.. +....+++..|. ..+.+++++|+.
T Consensus 70 G~AasgG~~iala~D~iva~p~--a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~ 147 (187)
T cd07020 70 ARAASAGTYILLAAHIAAMAPG--TNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLS 147 (187)
T ss_pred CCchhHHHHHHHhCCceeECCC--CcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCe
Confidence 5899999999999999999988 9999999985554433 245578888897 689999999999
Q ss_pred CCHHHHHHcCCcceecCC
Q psy9056 65 LKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 65 ~~a~eA~~~Glv~~~~~~ 82 (359)
|+++||+++||+|+++++
T Consensus 148 ~~a~eA~~~Glvd~v~~~ 165 (187)
T cd07020 148 LTAEEALKLGVIDLIAAD 165 (187)
T ss_pred ecHHHHHHcCCcccccCC
Confidence 999999999999999998
No 115
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.32 E-value=3e-12 Score=120.53 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=88.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
+++|+|||+|+||+++|..++++||+|++|.++++..+++...-+ =.+++.... ..+++..++|+ ++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~--N~~yLp~i~--------lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRE--NPKYLPGIL--------LPPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCc--CccccCCcc--------CCcccccccCHHHHHh
Confidence 469999999999999999999999999999999998887655311 122233222 22578888898 5678
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
++|+|++++|.+. .+++++++..+++++.++++.++|+..
T Consensus 71 ~ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 71 GADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred cCCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEeccccC
Confidence 8999999999877 889999999899999999998887664
No 116
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.27 E-value=2.3e-11 Score=113.84 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=86.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
++|+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+.. .+..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-----------------------GITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-----------------------CcEEeCCcHH
Confidence 379999999999999999999885 6999999998766543210 12233344 4
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcE
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rv 353 (359)
.+.+||+||.|++. ....++++++.++++++++|+|...|++++++.+.++.+.++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~v 115 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKV 115 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcE
Confidence 56899999999984 447899999999888889999999999999999998754343
No 117
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.27 E-value=1e-11 Score=118.78 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=95.6
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
+.+||+|||+|.||.++|..++..|+ +|+++|++++.++.-..++.+.. . ......++..++|++++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~----~--------~~~~~~~I~~~~d~~~l 72 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSN----V--------IAGSNSKVIGTNNYEDI 72 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhh----h--------ccCCCeEEEECCCHHHh
Confidence 34799999999999999999999996 99999999987532211121110 0 00111256666888899
Q ss_pred CCccEEEEcc-------------------cCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCCC-CcEEee
Q psy9056 298 KNADMVIEAV-------------------FEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKRP-DKVRNM 356 (359)
Q Consensus 298 ~~aD~Vi~av-------------------p~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~~-~rvig~ 356 (359)
++||+||++. +++..+++++++.|.+++++.. |++||++.+.+..+....+.| +|++|+
T Consensus 73 ~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGl 152 (321)
T PTZ00082 73 AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGM 152 (321)
T ss_pred CCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEe
Confidence 9999999955 5577889999999999987643 556888888888888887765 899998
Q ss_pred c
Q psy9056 357 G 357 (359)
Q Consensus 357 h 357 (359)
+
T Consensus 153 g 153 (321)
T PTZ00082 153 A 153 (321)
T ss_pred c
Confidence 6
No 118
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.26 E-value=5e-11 Score=111.16 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=84.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC----eeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY- 294 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 294 (359)
+||+|||+|+||.+|+..|.++|+ +|++| |+++++.+...+ . .+...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-----------~-------------g~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-----------L-------------GVKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-----------c-------------CCEEeCChH
Confidence 379999999999999999999998 89999 999887554321 1 12333444
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEe
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRN 355 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig 355 (359)
+.++++|+||+|++ ....++++.++.+.++++++|+|.+++++.+.+.+..+.. +++.
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr 114 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVR 114 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEE
Confidence 45788999999996 3347788888888888899988999999999999877643 5554
No 119
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.25 E-value=4e-11 Score=112.71 Aligned_cols=115 Identities=10% Similarity=0.134 Sum_probs=88.0
Q ss_pred CccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHH-HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEK-GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
..++|+|||+|+||.+|+..|.++| ++|++||++++ +++...... .+..+++
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-----------------------g~~~~~~ 58 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-----------------------GVKGTHN 58 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-----------------------CceEeCC
Confidence 4469999999999999999999998 78999999764 434322100 1223334
Q ss_pred c-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056 294 Y-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 294 ~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~ 358 (359)
. +.+.++|+||+|+|.+. ..+++.++.+.+.++++|+|..++++++.+.+.++...++++.|+
T Consensus 59 ~~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mP 122 (279)
T PRK07679 59 KKELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMP 122 (279)
T ss_pred HHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECC
Confidence 3 45688999999998555 567788898888888999999999999999988765556777764
No 120
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.23 E-value=5.7e-11 Score=110.82 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=87.4
Q ss_pred ccEEEEECCCcchHHHHHHHHHCC---CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKG---YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
|++|+|||+|.||..++..+.++| ++|.+||+++++.+.....+ .+..+++. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-----------------------g~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-----------------------GVRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-----------------------CCeecCChHH
Confidence 568999999999999999999999 78999999998766543211 12223333 4
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~ 358 (359)
.+.++|+||+|+|.+. .+++++++.+++ +++|+|.+++++.+.+...++...+++.+|+
T Consensus 59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P 117 (267)
T PRK11880 59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMP 117 (267)
T ss_pred HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecC
Confidence 4688999999997544 778888888776 5788899999999999988875567777775
No 121
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.23 E-value=1.9e-11 Score=116.20 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=90.9
Q ss_pred EEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056 223 VAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD 301 (359)
Q Consensus 223 I~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD 301 (359)
|+|||+|.||..+|..++.+|+ +|+++|++++.++.....+.+.. . ......++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~----~--------~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAA----P--------ILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhh----h--------hcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 99999999875432221122110 0 001113566667788899999
Q ss_pred EEEEcc--------------cCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCC-CCcEEee
Q psy9056 302 MVIEAV--------------FEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 302 ~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~-~~rvig~ 356 (359)
+||+++ +++..++++++++|.++++++. |+++|+..+.+..+.+..+. |+|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 6788899999999999997777 35577777777777777765 5789986
No 122
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.22 E-value=3.8e-11 Score=114.41 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=88.6
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
|+||+|||+|.||..+|..++..|+ +|+++|++++.++.....+.+... . .....+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~---~---------~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP---V---------EGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh---h---------cCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 999999998875433222222110 0 00112466667788899
Q ss_pred CccEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCC-CCcEEee
Q psy9056 299 NADMVIEAV--------------FEDINIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 299 ~aD~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~-~~rvig~ 356 (359)
+||+||+++ .++..++++++++|.+++++.. |+++|...+....+....+. +.|++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3466788999999999986553 33455555555566555554 4789986
No 123
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.21 E-value=1.6e-10 Score=113.00 Aligned_cols=100 Identities=24% Similarity=0.399 Sum_probs=79.7
Q ss_pred CccEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 219 PVKTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 219 ~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
.+++|+||| .|.||.++|..|.++|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----~------------------------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----A------------------------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----H------------------------------HHHH
Confidence 568999999 8999999999999999999999986420 0 0 0235
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCCCCcEEeecCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~rvig~h~~ 359 (359)
.+||+||+|+|++. ...+++++.+ +++++||++++|. .++..+.+.+. .+|+|.||.
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm 199 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPM 199 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCC
Confidence 78999999999887 5688899888 8999999988775 34566666544 369999984
No 124
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.20 E-value=4.5e-11 Score=114.42 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=93.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
+||+|||+|.||.+++..++..| .+|+++|++++.++....++.+.. . ......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~-~-----------~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFS-T-----------LVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhc-c-----------ccCCCeEEEeCCCHHHhCC
Confidence 59999999999999999999999 599999999877553222122110 0 0001124555678889999
Q ss_pred ccEEEEcc--cCCH------------HHHHHHHHHHHHhCCCCc-EEEEcCCCCcHHHHHhhcCCC-CcEEeec
Q psy9056 300 ADMVIEAV--FEDI------------NIKHQVIKEIEAVVPPHC-VVATNTSAIPITKIAAASKRP-DKVRNMG 357 (359)
Q Consensus 300 aD~Vi~av--p~~~------------~~k~~v~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~~-~rvig~h 357 (359)
||+||++. |.+. .+++++.+.+.+++++.. |++||++.+..+.+.+..+.| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 6666 789999999999987663 556777777777787777766 8999876
No 125
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.18 E-value=7.3e-11 Score=110.02 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=74.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~ 299 (359)
.||++||.|.||.+||..|.++||+|++||+++++...... ..| .....+ .+.+++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~----------~~G-------------a~~a~s~~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA----------AAG-------------ATVAASPAEAAAE 57 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHH----------HcC-------------CcccCCHHHHHHh
Confidence 48999999999999999999999999999999988432211 111 122223 367899
Q ss_pred ccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCc
Q psy9056 300 ADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~ 339 (359)
+|+||.|+|++.++...++ ..+.+.++++++++++|+.-|
T Consensus 58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp 99 (286)
T COG2084 58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISP 99 (286)
T ss_pred CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCH
Confidence 9999999998888766666 468888999999987765433
No 126
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.18 E-value=5.8e-11 Score=104.80 Aligned_cols=108 Identities=26% Similarity=0.316 Sum_probs=72.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH----HhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK----TGLDGAVKRKKMSALDRDRYLASLVGTLSYD- 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 295 (359)
+||+|||.|++|.++|..|+.+||+|+++|.|+++++.+.+... ..++..++.. ....++.++++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~--------~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKEN--------VSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHH--------HHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccc--------cccccchhhhhhhh
Confidence 58999999999999999999999999999999999887654321 1111111110 0125788888885
Q ss_pred CCCCccEEEEcccC--------CHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 296 PFKNADMVIEAVFE--------DINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 296 ~l~~aD~Vi~avp~--------~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
++.++|++|+|+|. |......+.+.|.++++++++|+.-|+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 48999999999975 345677888999999999888764443
No 127
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.16 E-value=9.8e-11 Score=110.91 Aligned_cols=105 Identities=23% Similarity=0.320 Sum_probs=76.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
+++|+|||+|.||.++|..+++.|++|++||+++++.+.... . ....+++. +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA-----------A-------------GAETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHh
Confidence 358999999999999999999999999999999987654321 1 12233444 4568
Q ss_pred CccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
++|+||+|+|++..++..++ ..+.+.++++++|++.++..+. ..+.+.+.
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~ 111 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALK 111 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHH
Confidence 99999999998887655544 3477778889998866655443 24555543
No 128
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.15 E-value=3.2e-11 Score=94.69 Aligned_cols=90 Identities=22% Similarity=0.245 Sum_probs=69.5
Q ss_pred EEEEECCCcchHHHHHHHHHCC---CeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc--cCcC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKG---YNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT--LSYD 295 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G---~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~~~ 295 (359)
||+|||+|+||.+++..|.++| ++|.++ +++++++++..+... ..+. +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-----------------------VQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-----------------------TEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-----------------------cccccCChHH
Confidence 7999999999999999999999 899966 999998776543211 1222 2336
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
.++++|+||+|+|.+. ..++++++ ....++++|+|.+.|
T Consensus 58 ~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 58 AAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeCCC
Confidence 6789999999998666 77899999 666788999888764
No 129
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.15 E-value=7.3e-11 Score=111.57 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=74.8
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA 300 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a 300 (359)
+|+|||+|.||.+||..++++|++|++||+++++++.+.. .+ ....++. +.+++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~a 56 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA-----------AG-------------AVTAETARQVTEQA 56 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CcccCCHHHHHhcC
Confidence 5999999999999999999999999999999987665321 11 1112233 567899
Q ss_pred cEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 301 DMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
|+||+|+|++..++..++ ..+...++++++|++.++..+. .++.+.+.
T Consensus 57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~ 108 (291)
T TIGR01505 57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVK 108 (291)
T ss_pred CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence 999999998877655544 3366777888988865554443 24555543
No 130
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.13 E-value=1.8e-10 Score=109.17 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=72.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
|++|+|||+|+||.+||..|+++|++|++||+++++.+.... .+ ....++. +.++
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~ 56 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAA 56 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence 468999999999999999999999999999999988665432 11 1223333 5678
Q ss_pred CccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH
Q psy9056 299 NADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
++|+||+|+|++..+...+. ..+.+.+++++++++.++..+.
T Consensus 57 ~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~ 100 (296)
T PRK15461 57 GAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPL 100 (296)
T ss_pred cCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHH
Confidence 99999999998765544433 2466677888888776665544
No 131
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.12 E-value=2.4e-10 Score=111.26 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=82.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||+|.||.++|..+.++|++|.+|+++++..+.... ...+..+ ..+++. +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998765332211 0111100 122333 45789
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHH-hCCCCcEEEEcCCCC--cHHHHHhhcCCCCcEEeecC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEA-VVPPHCVVATNTSAI--PITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~--~~~~l~~~~~~~~rvig~h~ 358 (359)
||+||+|+|.+. ...+++++.+ .++++++|.+.+|.. .++.+........++++.|+
T Consensus 61 aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP 120 (359)
T PRK06545 61 ADLIVLAVPVDA--TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP 120 (359)
T ss_pred CCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC
Confidence 999999999764 6799999987 478888886555432 23455555455678999996
No 132
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.12 E-value=1.7e-10 Score=110.47 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=79.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
|++|+|||+|.||+.+|..|+++|++|.+||+++++++......... ... .+ .....++..+++. +.++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-------~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-------IKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-------CcCCCCeEEeCCHHHHHh
Confidence 46899999999999999999999999999999998877654321000 000 00 0001134445555 3578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
++|+||+|+|.. ..+.+++++.++++++++|++.++|+..
T Consensus 71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 999999999974 4778889999998999998888776664
No 133
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.12 E-value=5.4e-10 Score=110.72 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=75.5
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH----HhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK----TGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
|.+++|+|||+|+||.++|..|+++||+|++||+++++++....... ..++..+... ...+++..+++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~--------~~~g~l~~~~~ 72 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTA--------VEGGYLRATTT 72 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHH--------hhcCceeeecc
Confidence 56789999999999999999999999999999999998886432110 0011110000 00123444443
Q ss_pred cCCCCCccEEEEcccCC--------HHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 294 YDPFKNADMVIEAVFED--------INIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 294 ~~~l~~aD~Vi~avp~~--------~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
+++||+||+|+|.+ ......+.+.+.++++++++|+..|+
T Consensus 73 ---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 73 ---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred ---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 45899999999974 35566778889999999998765444
No 134
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.11 E-value=2.2e-10 Score=94.55 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=73.4
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
-.||+|||+|++|..++..|.++||+|..+ .++++..+.+...+. ...+.+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~----------------------~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG----------------------AGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T----------------------T-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc----------------------cccccccccccc
Confidence 369999999999999999999999998665 787766555432111 111222225679
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHh--CCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAV--VPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~ 358 (359)
++|++|+++|++. ...+.++|..+ ..++++|+-++-..+.+.+...-.....+..+|+
T Consensus 68 ~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 9999999999997 78999999887 7789988755555666666554444455666664
No 135
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.11 E-value=3.8e-10 Score=102.38 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=74.6
Q ss_pred cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
+||+||| +|+||++++..|+++|++|++|++++++++.......+.+. ..+ +. .++..++..+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~---~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELG---HGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhcc---ccC-CC--------ceEEEeChHHHHhc
Confidence 3799997 89999999999999999999999999887665432211100 001 00 01222233356889
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
+|+||+|+|.+. ..++++++...+. +++|++.+++++.
T Consensus 69 aDvVilavp~~~--~~~~l~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 69 ADVVILAVPWDH--VLKTLESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred CCEEEEECCHHH--HHHHHHHHHHhcc-CCEEEEeccCcee
Confidence 999999998555 5678888877665 4888899888776
No 136
>PLN02256 arogenate dehydrogenase
Probab=99.11 E-value=3e-10 Score=107.88 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=83.9
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P 296 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 296 (359)
++.++|+|||+|.||.+++..+.+.|++|++||+++.. +.+. ..| +...++.+ .
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~ 88 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDF 88 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHH
Confidence 34578999999999999999999999999999998632 1111 001 11223332 2
Q ss_pred C-CCccEEEEcccCCHHHHHHHHHHH-HHhCCCCcEEEEcCC--CCcHHHHHhhcCCCCcEEeecC
Q psy9056 297 F-KNADMVIEAVFEDINIKHQVIKEI-EAVVPPHCVVATNTS--AIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 297 l-~~aD~Vi~avp~~~~~k~~v~~~l-~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~rvig~h~ 358 (359)
+ .++|+||+|+|.+. ...+++++ ..+++++++|++.+| +..++.+.+.++...++|++|+
T Consensus 89 ~~~~aDvVilavp~~~--~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HP 152 (304)
T PLN02256 89 CEEHPDVVLLCTSILS--TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHP 152 (304)
T ss_pred hhCCCCEEEEecCHHH--HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCC
Confidence 3 46999999998654 66888888 567889999988888 4556777777765567999997
No 137
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.11 E-value=5.1e-10 Score=106.66 Aligned_cols=118 Identities=23% Similarity=0.176 Sum_probs=83.3
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY- 294 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 294 (359)
+.+++|+|||+|.||.+++..+.+.|+ +|++||++++.++.+.. .+.. ....++.
T Consensus 4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~ 61 (307)
T PRK07502 4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAA 61 (307)
T ss_pred cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHH
Confidence 456899999999999999999999995 89999999987654321 1110 0112233
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcCCCCcEEeecCC
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASKRPDKVRNMGRI 359 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~rvig~h~~ 359 (359)
+.++++|+||+|+|... ...+++++.++++++++|++.++.- .+..+........++++.|+.
T Consensus 62 ~~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm 126 (307)
T PRK07502 62 EAVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPL 126 (307)
T ss_pred HHhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCC
Confidence 45789999999999755 5678888888888898876554421 123344444444589999863
No 138
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=6.3e-10 Score=106.18 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=85.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCCh-HHHHhhhcccccccCcCCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA-LDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~ 299 (359)
.+|+|||+|++|.++|..++++|++|+.+|+|+.+++...+......+...+ . .......+++..|+|.+.++.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~-----~~v~~~v~~g~lraTtd~~~l~~ 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLD-----EVVKEAVESGKLRATTDPEELKE 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHH-----HHHHHHHhcCCceEecChhhccc
Confidence 7999999999999999999999999999999999988765432111100000 0 000112246888999999999
Q ss_pred ccEEEEcccC--------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056 300 ADMVIEAVFE--------DINIKHQVIKEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 300 aD~Vi~avp~--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 339 (359)
||++|+|||. |+.......+.|.++++.+.+|+..|+..|
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~P 132 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPP 132 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 9999999996 444566777889999999998876555443
No 139
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.10 E-value=3.3e-10 Score=112.92 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=86.2
Q ss_pred cEEEEEC-CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
++|+||| .|.||.++|..+.++|++|++||++++..+..... . .+..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~----------~-------------gv~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE----------L-------------GVEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH----------c-------------CCeeccCHHHHhc
Confidence 3799998 79999999999999999999999998764332110 0 12223343 4578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCCCCcEEeecC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~rvig~h~ 358 (359)
++|+||+|+|.+. ...+++++.++++++++|++.+| +.+.+.+.+.++...++++.|+
T Consensus 58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HP 117 (437)
T PRK08655 58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHP 117 (437)
T ss_pred cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCC
Confidence 9999999999755 56888999999999999988877 3445667766655568999995
No 140
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.09 E-value=5.1e-10 Score=108.05 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=82.4
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
|++|+|||+|.||..+|..|+++|++|++||+++. .+...+. .+ ...............++.++++.+.+.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~---g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAH---GL----TLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhc---Cc----eeecCCCcceecccceeEeccChhhccC
Confidence 46899999999999999999999999999998653 2322110 00 0000000000001123445566667789
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHHhhcCC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIAAASKR 349 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~ 349 (359)
+|+||+|++... ..++++.+.++++++++|++.++|+.. +.+...++.
T Consensus 74 ~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~ 122 (341)
T PRK08229 74 ADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG 122 (341)
T ss_pred CCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC
Confidence 999999998765 568889999999999999888888875 456666653
No 141
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.09 E-value=9.6e-10 Score=104.36 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=73.1
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA 300 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a 300 (359)
+|+|||+|.||.++|..++++|++|.+||+++++++...+. +... .....+. +.+..+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~-----------g~~~----------~~s~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED-----------RTTG----------VANLRELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----------CCcc----------cCCHHHHHhhcCCC
Confidence 79999999999999999999999999999999987664321 1100 0000111 345779
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
|+||.|+|.+ ..+.+++++.++++++.+|++.+++.+.
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~ 98 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYK 98 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcc
Confidence 9999999987 3778889999999999999887776543
No 142
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.08 E-value=7e-10 Score=104.08 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=76.4
Q ss_pred EEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
+|+|||+|.||.+++..+.++|+ +|++||+++++++.+.+ .|. ....++.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----------~g~------------~~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----------LGL------------VDEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----------CCC------------CcccCCHHHHhc
Confidence 79999999999999999999996 79999999987665321 111 111223333445
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc-HHHHHhhcCCCCcEEeecC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP-ITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-~~~l~~~~~~~~rvig~h~ 358 (359)
+|+||+|+|.+. ...++.++.+ ++++++|++.++... +.+..... .+.++++.|+
T Consensus 59 aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hP 114 (275)
T PRK08507 59 CDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHP 114 (275)
T ss_pred CCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCC
Confidence 999999999766 5578888888 888998887655322 12222111 2357889986
No 143
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.07 E-value=3.6e-11 Score=119.37 Aligned_cols=125 Identities=16% Similarity=0.087 Sum_probs=92.0
Q ss_pred EEEEECCCcchHHHHH--HH----HHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056 222 TVAVLGAGLMGAGIAH--VT----VDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY- 294 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~--~l----~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 294 (359)
||+|||+|+||.+++. .+ ..+|++|++||+++++++.....+++.+... . ...++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~--------~~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----G--------APLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----C--------CCeEEEEeCCHH
Confidence 7999999999998766 33 4557899999999999888766554433221 1 11357778886
Q ss_pred CCCCCccEEEEcccC----------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCC--CCcEEeecCC
Q psy9056 295 DPFKNADMVIEAVFE----------DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKR--PDKVRNMGRI 359 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~----------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~--~~rvig~h~~ 359 (359)
+++++||+||++++. +..+|..++.++.+.+++++++.+++|...+.+++..+.. | +.+.+||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~t 145 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYA 145 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcC
Confidence 689999999999982 4666777777777778888877777777777777766653 4 66677764
No 144
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.07 E-value=6.8e-10 Score=110.03 Aligned_cols=106 Identities=21% Similarity=0.267 Sum_probs=76.1
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHH----hHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT----GLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
+|+|||+|+||.++|..++++||+|++||+++++++........ .++...... ...++++++++. +.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~~ 73 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYEDA 73 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHHH
Confidence 79999999999999999999999999999999988765432100 011110000 001236666776 45
Q ss_pred CCCccEEEEcccCCH--------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 297 FKNADMVIEAVFEDI--------NIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 297 l~~aD~Vi~avp~~~--------~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
++++|+||+|+|.+. .....+.+.+.++++++++|+..|
T Consensus 74 ~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 74 IRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 899999999999764 345677788888888998877544
No 145
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.07 E-value=9e-10 Score=101.81 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=84.5
Q ss_pred ccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY- 294 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 294 (359)
+++|+|||+|+||.+|+..|.++| .+|++.++++++++.....+. +..+++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g-----------------------~~~~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG-----------------------VVTTTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC-----------------------CcccCcHH
Confidence 468999999999999999999999 589999999998764332111 1123444
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK 348 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~ 348 (359)
+.+.++|+||+|+ ++....++++++.. ..++.+|+|...|++++.+...++
T Consensus 58 ~~~~~advv~Lav--KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 58 EAVEEADVVFLAV--KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred HHHhhCCEEEEEe--ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC
Confidence 5678899999999 45668899999988 778999999999999999999997
No 146
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.06 E-value=9e-10 Score=103.07 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=83.1
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC--cC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS--YD 295 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 295 (359)
+++|+|+|.|.||.++|..+..+|+.|.+++++.+. ++.+ .+.+..+ . .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d---------~--~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID---------E--LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc---------c--cccchhhh
Confidence 579999999999999999999999988777666543 2221 1112111 0 1112 35
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~ 358 (359)
.+.++|+||.|||-.. ...+++++.++++++++|++.+|... ++.+.+..+...+|+|+|+
T Consensus 61 ~~~~aD~VivavPi~~--~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP 123 (279)
T COG0287 61 AAAEADLVIVAVPIEA--TEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP 123 (279)
T ss_pred hcccCCEEEEeccHHH--HHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC
Confidence 6788999999999777 55999999999999999988777533 4555555543238999997
No 147
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=6.3e-10 Score=106.50 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=85.4
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH----HHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI----KTGLDGAVKRKKMSALDRDRYLASLVGTLSYD- 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 295 (359)
+||+|+|.|++|...+.+|+..||+|+++|.++++++.+.+.. +..++.+++.+.. -+|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~--------~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA--------SGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc--------cCcEEEEcCHHH
Confidence 5899999999999999999999999999999999999877653 2334444443322 14699999994
Q ss_pred CCCCccEEEEcccC--------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056 296 PFKNADMVIEAVFE--------DINIKHQVIKEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 296 ~l~~aD~Vi~avp~--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 339 (359)
+++++|++|+|||. |......+.+.|.++++..++|+ +-|++|
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVP 123 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVP 123 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCC
Confidence 68999999999976 44467788899999988766654 333444
No 148
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=99.05 E-value=5.3e-10 Score=106.34 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=84.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
+||+|||+|+||..+|..++..|+ +|+++|++++..+.....+.+ .. .......++++++|++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~---~~---------~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYE---AS---------PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhh---hh---------hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 899999986643311111111 00 00111246777888877999
Q ss_pred ccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcC--CCCcHHHHHhhcCC-CCcEEee
Q psy9056 300 ADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNT--SAIPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 300 aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~t--s~~~~~~l~~~~~~-~~rvig~ 356 (359)
||+||++++ .|..+.+++.++|.++. ++.+|+..| ..+....+....+. +.|++|+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 999999997 24567777888899886 455554444 44444556666554 4789886
No 149
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.05 E-value=2.8e-10 Score=109.59 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=80.1
Q ss_pred EEEEECCCcchHHHHHHHHHCC--------CeeEEecC-----CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKG--------YNTIVKDS-----FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL 288 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G--------~~V~l~d~-----~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 288 (359)
||+|||+|+||+++|..++.+| ++|.+|.+ +++..+...... +..++.++ -...+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~--------~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTH--------ENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcC--------CCccccCC--CcCCCCe
Confidence 6899999999999999999999 99999998 443333222211 11111000 1123567
Q ss_pred ccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056 289 VGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341 (359)
Q Consensus 289 ~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 341 (359)
++++|+ +.++++|+||.++|.+. .+.+++++.++++++.++++.++|+..+
T Consensus 71 ~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred EEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 788888 56899999999999777 7899999999999888999988877654
No 150
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.04 E-value=2e-10 Score=111.42 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=80.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCC-------CeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG-------YNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL 292 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 292 (359)
.+|+|||+|.||+++|..++.+| ++|.+|.++++. -+...+.++.. ....++.++ ....+++..++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~--~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG--IKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC--CcCCCceEEec
Confidence 58999999999999999999998 799999999862 11111222211 011111110 12335788888
Q ss_pred Cc-CCCCCccEEEEcccCCHHHHHHHHHHHHH--hCCCCcEEEEcCCCCcH
Q psy9056 293 SY-DPFKNADMVIEAVFEDINIKHQVIKEIEA--VVPPHCVVATNTSAIPI 340 (359)
Q Consensus 293 ~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~~ 340 (359)
|+ ++++++|+||.++|.+. .+++++++.+ +++++.+++|.+.|+..
T Consensus 86 dl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred CHHHHHhcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 87 56899999999998666 8899999998 77777788888777653
No 151
>PRK07680 late competence protein ComER; Validated
Probab=99.02 E-value=9.5e-10 Score=103.06 Aligned_cols=103 Identities=10% Similarity=0.152 Sum_probs=80.7
Q ss_pred EEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
+|+|||+|+||.+++..|.++|+ +|.+||+++++.+...+.. ..+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~----------------------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY----------------------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc----------------------CCeEEECCHHHH
Confidence 69999999999999999999994 7999999998765432110 012333344 44
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK 348 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~ 348 (359)
+.++|+||+|+|.+. ..++++++.+++.++++|++.+++++++.+...++
T Consensus 60 ~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~ 109 (273)
T PRK07680 60 ISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP 109 (273)
T ss_pred HHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC
Confidence 788999999997433 67888999888888899999999999999988765
No 152
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.02 E-value=7.5e-10 Score=110.89 Aligned_cols=103 Identities=12% Similarity=0.195 Sum_probs=77.2
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C---
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D--- 295 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--- 295 (359)
|.+|+|||+|.||++||..++++||+|.+||+++++.+...+...+ .+. .+..+++. +
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g~-----------~i~~~~s~~e~v~ 62 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKE-------GNT-----------RVKGYHTLEELVN 62 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhh-------cCC-----------cceecCCHHHHHh
Confidence 4589999999999999999999999999999999987775432110 010 12233343 2
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 341 (359)
.++.+|+||.++|.... .+.+++++.+++.++.||++.+++.+..
T Consensus 63 ~l~~~d~Iil~v~~~~~-v~~vi~~l~~~L~~g~iIID~gn~~~~d 107 (470)
T PTZ00142 63 SLKKPRKVILLIKAGEA-VDETIDNLLPLLEKGDIIIDGGNEWYLN 107 (470)
T ss_pred cCCCCCEEEEEeCChHH-HHHHHHHHHhhCCCCCEEEECCCCCHHH
Confidence 23468999999885554 6777889999999999999888876554
No 153
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.01 E-value=7e-10 Score=108.83 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=72.4
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA 300 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a 300 (359)
||+|||+|+||.++|..++. ||+|++||+++++++.+.+......+..++.. ......+++.+++. +.++++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~------l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQF------LQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHH------HHhCCCcEEEecchhhhhcCC
Confidence 79999999999999988875 99999999999998887664322211111110 00011234455554 557999
Q ss_pred cEEEEcccCCH---------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 301 DMVIEAVFEDI---------NIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 301 D~Vi~avp~~~---------~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
|+||+|+|++. ...+.+++.|.. ++++++|+..|
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S 117 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS 117 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
Confidence 99999999873 344566677877 57778765433
No 154
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.00 E-value=2.1e-09 Score=101.03 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=80.9
Q ss_pred ccEEEEECCCcchHHHHHHHHHCC----CeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKG----YNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY 294 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (359)
|.+|+|||+|+||.+++..+.++| ++|++|+++++. ++.... . ......+++.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-------~---------------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-------K---------------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-------H---------------cCCeEEeCCH
Confidence 568999999999999999999998 789999987532 222111 0 0012223343
Q ss_pred -CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCC
Q psy9056 295 -DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKR 349 (359)
Q Consensus 295 -~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~ 349 (359)
+.+.++|+||+|+|.+. ..++++++.++++++++|+|.+.|++++++.+.++.
T Consensus 59 ~e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~ 112 (277)
T PRK06928 59 AEIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG 112 (277)
T ss_pred HHHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC
Confidence 45789999999998444 778999998888888899999999999999998763
No 155
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.00 E-value=2.9e-09 Score=97.94 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=82.3
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCC---e-eEEecC-CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGY---N-TIVKDS-FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~---~-V~l~d~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
+..||+|||+|.||.+++..+.++|+ + |+++++ ++++++...... .+..+++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 59 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-----------------------NVSTTTD 59 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-----------------------CcEEeCC
Confidence 34689999999999999999998873 3 777887 456554432210 1223344
Q ss_pred c-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeec
Q psy9056 294 Y-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMG 357 (359)
Q Consensus 294 ~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h 357 (359)
. +.+.++|+||+|+|.+. .+++++++.++++ +.+|+|.+.+++++.+.+.++...+++-.|
T Consensus 60 ~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 60 WKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred hHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEEC
Confidence 4 45788999999998655 6788888888765 568889999999999999886544454343
No 156
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.97 E-value=2.1e-09 Score=107.96 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=78.9
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY---- 294 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 294 (359)
-+.+|||||.|.||.+||..|+++|++|.+|||++++.+...+... ..|. ..+....+.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHH
Confidence 4568999999999999999999999999999999998776543110 0011 011222233
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
+.++.+|+||.|+|.+.. .++++..+.+.+.++.||++.++..+. ..+.+.+.
T Consensus 68 ~~l~~~dvIi~~v~~~~a-V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~ 122 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAP-VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA 122 (493)
T ss_pred hcCCCCCEEEEECCCcHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH
Confidence 234459999999997776 456668888888899999877765443 34444443
No 157
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.96 E-value=3.1e-09 Score=100.96 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=72.5
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC---
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF--- 297 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l--- 297 (359)
+|+|||+|.||.+||..+.++|++|++||+++++.+...+ .+ .....+. +.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-----------LG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHHhC
Confidence 7999999999999999999999999999999987665321 11 1222233 222
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS 347 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~ 347 (359)
..+|+||.|+|.+.. .+.++..+.+.++++.+|+..++..+. .++.+.+
T Consensus 58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~ 108 (299)
T PRK12490 58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEEL 108 (299)
T ss_pred CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHH
Confidence 337999999998744 556778888888888888876554442 3444444
No 158
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.96 E-value=1.5e-09 Score=101.22 Aligned_cols=121 Identities=23% Similarity=0.271 Sum_probs=90.0
Q ss_pred EEEECC-CcchHHHHHHHHHCC----CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCC
Q psy9056 223 VAVLGA-GLMGAGIAHVTVDKG----YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDP 296 (359)
Q Consensus 223 I~IIG~-G~mG~~iA~~l~~~G----~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 296 (359)
|+|||+ |.||..++..++..| .+|+++|+++++++.....+++..... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 699999999988887666655433221 0125666777 488
Q ss_pred CCCccEEEE--------------cccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEeec
Q psy9056 297 FKNADMVIE--------------AVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNMG 357 (359)
Q Consensus 297 l~~aD~Vi~--------------avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~h 357 (359)
+++||+||+ .+.++..+++++++.+.+++ ++.+++..|+. +....+.+..+. +.|++|+.
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHhCCCchhEEEee
Confidence 999999999 56677889999999999998 55655544443 333445455443 58899864
No 159
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.93 E-value=4e-09 Score=93.35 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=72.9
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH-HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE-KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
|++|+|+|.|++|.++|..|+++||+|++-.++. ++++...+.+. ..++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~---------------------~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG---------------------PLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc---------------------cccccCChHHHHh
Confidence 6899999999999999999999999999996554 44444333222 1244444457789
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
.+|+||.++|-.. ..++++++.+.+. ++||++.+..+
T Consensus 60 ~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID~tnp~ 96 (211)
T COG2085 60 LADVVVLAVPFEA--IPDVLAELRDALG-GKIVIDATNPI 96 (211)
T ss_pred cCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEecCCCc
Confidence 9999999998555 6689999998776 88988877753
No 160
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.93 E-value=3.5e-09 Score=102.41 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=82.5
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
..++||+|||+|.||+.+|..++++| +|++|.++++..+.+.+...+ ..+...+ .....++..++|. +.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~-------~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGND-------VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCC-------cccCCCeEEECCHHHH
Confidence 34578999999999999999999999 689999999887765432100 0000000 0111345667776 46
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
++++|+||+|+|... .+.+++++.+++++++++++.++|+..
T Consensus 75 ~~~aDlVilavps~~--~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 75 ANCADVVVMGVPSHG--FRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 899999999998554 789999999999999888888888875
No 161
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.93 E-value=3.1e-09 Score=102.22 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=71.9
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
+++|+|||+|.||.++|..|+++|++|++|++++++.+.+.....+.. ... + .....++..+++. +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~--~~~-g-------~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENRE--YLP-G-------VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccc--cCC-C-------CcCCCCeEEeCCHHHHHc
Confidence 358999999999999999999999999999999988766543211100 000 1 0011124445555 4578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 339 (359)
++|+||+|+|++. .++++ +.+++++++++.++|+.
T Consensus 74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLA 108 (328)
T ss_pred CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccc
Confidence 9999999999775 34554 44567788888888765
No 162
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.93 E-value=9.6e-09 Score=97.36 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=80.4
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCcc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD 301 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD 301 (359)
+|+|||+|.||+.+|..|+++|++|++++++++.++..... .+. ...+. ....+..+++.+.+..+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~---g~~--~~~~~--------~~~~~~~~~~~~~~~~~d 68 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN---GLR--LEDGE--------ITVPVLAADDPAELGPQD 68 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc---CCc--ccCCc--------eeecccCCCChhHcCCCC
Confidence 79999999999999999999999999999988776654321 000 00110 001122334444458899
Q ss_pred EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcC
Q psy9056 302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASK 348 (359)
Q Consensus 302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~ 348 (359)
+||+|++... ...+++++.+++.++++|++..+|+... .+...++
T Consensus 69 ~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~ 114 (304)
T PRK06522 69 LVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG 114 (304)
T ss_pred EEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence 9999998665 5788999999988888888888888754 4555454
No 163
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.92 E-value=3.8e-09 Score=104.91 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=75.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
+||+|||.|+||.++|..++. ||+|++||+++++++.+.+......+... ... ....++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~-------~~l-~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTE-------EEL-REARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCH-------HHH-HhhCCeeEEeCHHHHcCC
Confidence 589999999999999999877 69999999999998876532111000000 000 011356677777778999
Q ss_pred cEEEEcccCCH--------HHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 301 DMVIEAVFEDI--------NIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 301 D~Vi~avp~~~--------~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
|++|+|+|.+. .......+.|.++++++.+|+..|+
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST 121 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST 121 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 99999999652 3334445678899998887765444
No 164
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.92 E-value=4.1e-09 Score=102.29 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=74.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHC-CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDK-GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
++|+|||. |.||.++|..|.+. |++|+.+|++++. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 68999999 99999999999974 8999999985321 0111 357
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHh---CCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAV---VPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~ 358 (359)
++||+||+|+|.+. ...+++++.++ ++++++|.+.+|... ++.+ .....+|||+|+
T Consensus 50 ~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HP 110 (370)
T PRK08818 50 QRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHP 110 (370)
T ss_pred cCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCC
Confidence 89999999999766 56899998876 689999988777542 2333 222346999997
No 165
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.92 E-value=5.7e-09 Score=96.95 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=78.3
Q ss_pred EEEEECCCcchHHHHHHHHHCCCe---eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYN---TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~---V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
+|+|||+|+||.+++..|.++|++ |.+|++++++.+.....+ ......++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc----------------------CCceEeCCHHHHH
Confidence 799999999999999999999864 588999988765433211 012233344 346
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcE
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rv 353 (359)
.++|+||+|+|. .....+++++. ..++++|+|...+++++.+...++...++
T Consensus 60 ~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~ 111 (258)
T PRK06476 60 DRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKL 111 (258)
T ss_pred HhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCE
Confidence 789999999984 33567777763 46788888999999999999888643333
No 166
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.91 E-value=6e-09 Score=99.05 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=69.7
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC---C
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP---F 297 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---l 297 (359)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+ .| ....++. +. +
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHhhc
Confidence 7999999999999999999999999999999988665421 11 1122222 22 2
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 339 (359)
.++|+||.++|.+.. .+.++..+.+.++++.++++.+++.+
T Consensus 58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYY 98 (301)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 347999999997643 45677888888888898887766554
No 167
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.89 E-value=1.1e-08 Score=86.34 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=83.9
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
.||+|||+ |.+|..+|..+...++ +++++|++++.++....++++...... ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-------------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-------------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-------------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-------------ccccccccccccc
Confidence 48999999 9999999999999986 899999999877776665554321110 0112234667899
Q ss_pred CCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC-CCCcEEe
Q psy9056 298 KNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK-RPDKVRN 355 (359)
Q Consensus 298 ~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~rvig 355 (359)
++||+||++.-. +..+.+++.+.+.++. ++.+++..|+.+. .+.+.+..+ .|+|++|
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 999999987722 3446677788899997 5555555555544 344555555 3577876
No 168
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.89 E-value=4.8e-09 Score=99.10 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=68.6
Q ss_pred EECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEE
Q psy9056 225 VLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMV 303 (359)
Q Consensus 225 IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~V 303 (359)
|||+|.||.+||..|+++|++|++||+++++.+.... .| ...+++. +.++++|+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcCCEE
Confidence 6899999999999999999999999999987665422 11 2233344 567899999
Q ss_pred EEcccCCHHHHHHHH---HHHHHhCCCCcEEEEcCCCCcHH
Q psy9056 304 IEAVFEDINIKHQVI---KEIEAVVPPHCVVATNTSAIPIT 341 (359)
Q Consensus 304 i~avp~~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~~~ 341 (359)
|.|+|.+..+ +.++ +.+.+.++++++|++.+ ++.++
T Consensus 57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~s-t~~p~ 95 (288)
T TIGR01692 57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDCS-TIDPD 95 (288)
T ss_pred EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEECC-CCCHH
Confidence 9999976654 4555 67777888888887666 44443
No 169
>PLN02712 arogenate dehydrogenase
Probab=98.89 E-value=9.3e-09 Score=107.29 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P 296 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 296 (359)
.+.++|+|||+|.||.++|..+.+.|++|++||++... +.+. +.| +...++.+ .
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el 421 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDL 421 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHH
Confidence 45579999999999999999999999999999998542 1111 111 11223332 2
Q ss_pred CC-CccEEEEcccCCHHHHHHHHHHHHH-hCCCCcEEEEcCCC--CcHHHHHhhcCCCCcEEeecC
Q psy9056 297 FK-NADMVIEAVFEDINIKHQVIKEIEA-VVPPHCVVATNTSA--IPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 297 l~-~aD~Vi~avp~~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~l~~~~~~~~rvig~h~ 358 (359)
+. .+|+||+|+|... ...+++++.. .++++++|++.+|+ .++..+...++...++++.|+
T Consensus 422 ~~~~aDvVILavP~~~--~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HP 485 (667)
T PLN02712 422 CEEHPEVILLCTSILS--TEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHP 485 (667)
T ss_pred HhcCCCEEEECCChHH--HHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCC
Confidence 43 5899999999544 5677888765 57889999988776 455666666655557999997
No 170
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=3.1e-09 Score=101.39 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=65.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||+|.||.++|..|+.+||+|++|++++.. +. +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 37999999999999999999999999999998530 11 34678
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCcH
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTSAIPI 340 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~ 340 (359)
+|+||+|+|.+ ..+.+++++..+ ++++++|+++++++.+
T Consensus 48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence 99999999975 377888888774 6788888888775543
No 171
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=7e-09 Score=99.66 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=77.3
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC-CC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF-KN 299 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l-~~ 299 (359)
||+|||+|.||+.+|..|+++|++|.+|+++++.++.....-.+ ....+. .....++..+++.+ .+ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~--------~~~~~~--~~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN--------LKYLPT--CHLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC--------cccCCC--CcCCCCeEEeCCHHHHHhCC
Confidence 69999999999999999999999999999998876655432100 000000 01112445556653 44 58
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHH-hCCCCcEEEEcCCCCcH
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEA-VVPPHCVVATNTSAIPI 340 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~~~ 340 (359)
+|+||+++|... ..++++++.+ ++.+++.|++.++|+..
T Consensus 72 ~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 72 ATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999999998666 7789999998 88888877778888743
No 172
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.87 E-value=6.8e-09 Score=104.04 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=73.9
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----CCC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY----DPF 297 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~l 297 (359)
+|+|||+|.||.+||..++++|++|++||+++++.+...+... .+. .+...++. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~--------~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA--------KGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc--------CCC-----------CceecCCHHHHHhhc
Confidence 4899999999999999999999999999999998776543100 010 01111122 245
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 341 (359)
+.+|+||.|+|.... .+.++.++.+++.++.||++.+++.+..
T Consensus 62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~ 104 (467)
T TIGR00873 62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPD 104 (467)
T ss_pred CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHH
Confidence 679999999997554 5678889999999999998887765443
No 173
>KOG0409|consensus
Probab=98.86 E-value=5.1e-09 Score=96.63 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=74.0
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPF 297 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l 297 (359)
..++||+||.|+||.+|+..|.++||.|++||++.++.+...+ .|. .+..+ .|.+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~-----------~Ga-------------~v~~sPaeVa 89 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE-----------AGA-------------RVANSPAEVA 89 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHH-----------hch-------------hhhCCHHHHH
Confidence 3579999999999999999999999999999999988665432 221 12222 3668
Q ss_pred CCccEEEEcccCCHHHHHHHHHH--HHHhCCCCcEE-EEcCC--CCcHHHHHhhcCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKE--IEAVVPPHCVV-ATNTS--AIPITKIAAASKR 349 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~--l~~~~~~~~ii-~s~ts--~~~~~~l~~~~~~ 349 (359)
++||+||.++|.+.+++..++.. +...++++... +..|+ .-...++++....
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~ 146 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN 146 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh
Confidence 99999999999888877766643 33334454433 33222 2223466665543
No 174
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.86 E-value=7.3e-09 Score=103.88 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=78.9
Q ss_pred ccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHH----HHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQI----KTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
|++|+|||+|++|..+|..|+.+| ++|+++|.++++++.+.+.. +..++..+... .-.++.++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 468999999999999999999985 78999999999988865432 11111111110 1125888898
Q ss_pred c-CCCCCccEEEEcccCC-------------HHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056 294 Y-DPFKNADMVIEAVFED-------------INIKHQVIKEIEAVVPPHCVVATN 334 (359)
Q Consensus 294 ~-~~l~~aD~Vi~avp~~-------------~~~k~~v~~~l~~~~~~~~ii~s~ 334 (359)
+ +++++||++|+|||.. ......+.++|.++++++++|+.-
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ 126 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 7 4689999999999633 336778889999999998877643
No 175
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.85 E-value=7.7e-09 Score=97.86 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=66.2
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA 300 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a 300 (359)
+|+|||.|+||.+|+..|.++|++|++||+++. .+.. ...| .....+. +.++.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence 799999999999999999999999999999874 2221 1111 1122222 457899
Q ss_pred cEEEEcccCCHHHHHHHHH--HHHHhCCCCcEEEEcCCCCc
Q psy9056 301 DMVIEAVFEDINIKHQVIK--EIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~ 339 (359)
|+||.|+|++..+...++. .+...+.++++|+..++.-+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p 97 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISP 97 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCH
Confidence 9999999988765554443 25556778888876655443
No 176
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.84 E-value=3e-09 Score=93.28 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=65.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHh--------HHhhhcC--hHHHHHHHhcCCCCCHHHH
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ--------RLPKLTA--LPNVLDMTLTGKTLKADKA 70 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~--------~l~~~~g--~~~a~~~~ltg~~~~a~eA 70 (359)
|.|.|||+.|+++||+++++++ ++|+++.+..+..+...... .+++..| ....++++..|..+++++|
T Consensus 80 G~a~g~g~~la~a~D~i~a~~~--a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A 157 (177)
T cd07014 80 GNAASGGYWISTPANYIVANPS--TLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDA 157 (177)
T ss_pred CchhHHHHHHHHhCCEEEECCC--CeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHH
Confidence 5789999999999999999988 99999988777433322222 4445555 6778899999999999999
Q ss_pred HHcCCcceecCC
Q psy9056 71 KKMGIVDQLVEP 82 (359)
Q Consensus 71 ~~~Glv~~~~~~ 82 (359)
++.||||++.+.
T Consensus 158 ~~~GLVD~v~~~ 169 (177)
T cd07014 158 KANGLVDSLGSF 169 (177)
T ss_pred HHcCCcccCCCH
Confidence 999999999987
No 177
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.82 E-value=2e-08 Score=106.71 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=84.4
Q ss_pred CccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
++++|+|||+|.||.+++..+.++| ++|++||+++++++.+.+ .+.. ....++. +
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----------~g~~-----------~~~~~~~~~ 59 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----------LGVI-----------DRGEEDLAE 59 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----------CCCC-----------CcccCCHHH
Confidence 3589999999999999999999999 489999999887655321 1110 0112233 4
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEeecC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNMGR 358 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~h~ 358 (359)
.++++|+||+|+|.+ ....+++++.++++++++|.+.++. ..++.+.+.+.. ..|+++.|+
T Consensus 60 ~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hP 123 (735)
T PRK14806 60 AVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHP 123 (735)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCC
Confidence 578999999999865 4789999999998888877655442 225666666543 468888887
No 178
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.82 E-value=2.7e-08 Score=95.99 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=72.4
Q ss_pred chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccC
Q psy9056 231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFE 309 (359)
Q Consensus 231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~ 309 (359)
=|.+||..|+++||+|++||++++.++... ++..... .+.++++. +.+.++|+||+|+|.
T Consensus 31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~-------------Gi~~asd~~eaa~~ADvVIlaVP~ 91 (342)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDA-------------GVKVVSDDAEAAKHGEIHILFTPF 91 (342)
T ss_pred CHHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHC-------------CCEEeCCHHHHHhCCCEEEEECCC
Confidence 489999999999999999999998654311 1111111 23444444 567899999999997
Q ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH---HHHHhhcCCCCcEEeecC
Q psy9056 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPI---TKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 310 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~rvig~h~ 358 (359)
+. ..+.++..+.+.++++++|++.+++.+. ..+.+.+..+.+.+|.|+
T Consensus 92 ~~-~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~ 142 (342)
T PRK12557 92 GK-KTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISS 142 (342)
T ss_pred cH-HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeee
Confidence 65 4667888999999999988866654333 234455543334444443
No 179
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.82 E-value=1e-08 Score=97.88 Aligned_cols=110 Identities=17% Similarity=0.103 Sum_probs=80.0
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
-++|+|||.|+||.++|..|..+|++|++++++..+...... +. .+...+..+.++.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~----------~~-------------G~~~~s~~eaa~~ 73 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAE----------AD-------------GFEVLTVAEAAKW 73 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHH----------HC-------------CCeeCCHHHHHhc
Confidence 378999999999999999999999999998877543222110 01 1222222256889
Q ss_pred ccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEe
Q psy9056 300 ADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRN 355 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig 355 (359)
||+|++++|.+.. ..++ +++.++++++++| +.+.|+.+.......+...+++-
T Consensus 74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~ 127 (330)
T PRK05479 74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIM 127 (330)
T ss_pred CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEE
Confidence 9999999996663 6777 7799999999988 88889888877665544444443
No 180
>PLN02712 arogenate dehydrogenase
Probab=98.80 E-value=2.7e-08 Score=103.89 Aligned_cols=112 Identities=10% Similarity=0.065 Sum_probs=79.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC-C-
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-F- 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l- 297 (359)
.++|+|||.|.||.++|..+.+.|++|++||++... +.+. +. .+...++.+. +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~-------------Gv~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SL-------------GVSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------Hc-------------CCEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 1111 00 1222334422 3
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHH-HhCCCCcEEEEcCCCCc--HHHHHhhcCCCCcEEeecC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIE-AVVPPHCVVATNTSAIP--ITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~rvig~h~ 358 (359)
.++|+||+|+|.+ ....+++++. ++++++++|++.+|... ...+...++...+++++|+
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HP 168 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHP 168 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCC
Confidence 5699999999854 4678888876 66888999887765432 3445555554457999997
No 181
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.80 E-value=1.6e-08 Score=96.38 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=83.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
+||+|||+|.+|.++|..++..| ++|+++|+++++++.....+++..... +. .....+.+++++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~----------~~~i~~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS----------PVKIKAGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC----------CeEEEcCCHHHhC
Confidence 48999999999999999999999 589999999988777665554332110 00 0011234566789
Q ss_pred CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056 299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~ 356 (359)
+||+||.++.. +..+.+++.+.+.++.+ +.+++..++. +....+....+. ++|++|+
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~ 141 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASNPVDVITYVVQKLSGLPKNRVIGT 141 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecChHHHHHHHHHHHhCcCHHHEeec
Confidence 99999998854 34466778888999876 5555544443 333444454444 4788875
No 182
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.80 E-value=4.7e-08 Score=92.79 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=80.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~ 299 (359)
+||+|||+|.||..+|..|+++|++|++|++ +++++...+. .+. .... . . .... .....++.+ ....
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~~--~~~~--~-~--~~~~-~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GLV--IRSD--H-G--DAVV-PGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---CeE--EEeC--C-C--eEEe-cceeecCHHHccCC
Confidence 3799999999999999999999999999999 7766654321 000 0000 0 0 0000 111234443 3588
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEE
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVR 354 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvi 354 (359)
+|+||+|++... ...+++++.+++.++++|++.+.|+... .+.+.++ +.+++
T Consensus 69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~-~~~v~ 121 (305)
T PRK12921 69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFG-RERVL 121 (305)
T ss_pred CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCC-cccEE
Confidence 999999998765 5688899999888889888888888754 5555553 33444
No 183
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.78 E-value=2.1e-08 Score=95.65 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=77.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCC-HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF-EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
++|+|||+|+||.++|..|..+|++|+++++. ++..+.+. +. .+...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~-------------Gv~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------ED-------------GFKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HC-------------CCEECCHHHHHhc
Confidence 68999999999999999999999998776544 33333221 11 1222222255789
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEE
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVR 354 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvi 354 (359)
+|+|+.++|.+.. ...+.+++.++++++. ++|...|+++..+...++...+++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~Vv 112 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVV 112 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEE
Confidence 9999999996633 5566777888888776 668999999998887775443443
No 184
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.75 E-value=3e-08 Score=94.62 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=83.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
.||+|||+|.+|.++|..++..|. +++|+|++++.++....++++..... ....+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-------------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL-------------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC-------------CCCEEEECCCHHHhC
Confidence 499999999999999999999987 79999999887666555555432100 012455567888899
Q ss_pred CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCC-CCcEEee
Q psy9056 299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~-~~rvig~ 356 (359)
+||+||++.-. +..+.+++.+.|.++.+ +.+++..++ .+....+....+. +.|++|+
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence 99999996521 33356677788999965 454444444 4434455555554 4788886
No 185
>PLN02602 lactate dehydrogenase
Probab=98.74 E-value=3.9e-08 Score=95.00 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=84.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
+||+|||+|.+|+++|..++..|. ++.|+|++++.++....++++... +. + . ..+..++++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~---------~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--P---------R-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--C---------C-CEEEeCCCHHHhC
Confidence 599999999999999999999987 799999999877766555554321 00 0 0 1344445788899
Q ss_pred CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcCCC-CcEEee
Q psy9056 299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASKRP-DKVRNM 356 (359)
Q Consensus 299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~~~-~rvig~ 356 (359)
+||+||++.-. +..+.+++.+.|.+++++ .+++ ||...+....+....+.| .||+|+
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivivvtNPvdv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILLIVSNPVDVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCchHHHHHHHHHHhCCCHHHEEee
Confidence 99999997521 334566777888888655 4444 444444445555555544 788875
No 186
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.70 E-value=6e-08 Score=92.70 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=81.6
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
..++|+|||+|.||+.+|..|+++|++|+++.+++. +..... ...+.. ..+. .........++.+...
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~-g~~~~~--~~~~-------~~~~~~~~~~~~~~~~ 71 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVREN-GLQVDS--VHGD-------FHLPPVQAYRSAEDMP 71 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhC-CeEEEe--CCCC-------eeecCceEEcchhhcC
Confidence 335899999999999999999999999999999863 221110 000000 0000 0001122333445567
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEEe
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVRN 355 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvig 355 (359)
.+|+||+|++... ..++++.+.+.+.++++|++..+|+... .+.+.++ ++++++
T Consensus 72 ~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~ 126 (313)
T PRK06249 72 PCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLG 126 (313)
T ss_pred CCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEE
Confidence 8999999998766 3578888999998999999999998875 4555554 445554
No 187
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.70 E-value=1.3e-07 Score=90.90 Aligned_cols=100 Identities=22% Similarity=0.218 Sum_probs=77.4
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||.|.||.++|..+...|++|++||++++..... +...+++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 589999999999999999999999999999997532110 1122334 46799
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
||+|++++|.+.+....+.+.+.+.++++++|++.+.|.-+ ..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999999887777777888889999999887776444 45555554
No 188
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.69 E-value=3e-08 Score=85.41 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=62.9
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcc---------------hHhHHhhhcC--hHHHHHHHhcCC
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG---------------GTQRLPKLTA--LPNVLDMTLTGK 63 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g---------------~~~~l~~~~g--~~~a~~~~ltg~ 63 (359)
|.|.|+|+.|+++||+|+++++ ++|++++...|..+... ....+.+..| .....+++.++.
T Consensus 67 g~a~s~g~~ia~a~d~~~~~~~--a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 144 (160)
T cd07016 67 GLAASAASVIAMAGDEVEMPPN--AMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET 144 (160)
T ss_pred chHHhHHHHHHhcCCeEEECCC--cEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence 5688999999999999999988 99999887766544332 2334777788 577778888888
Q ss_pred CCCHHHHHHcCCccee
Q psy9056 64 TLKADKAKKMGIVDQL 79 (359)
Q Consensus 64 ~~~a~eA~~~Glv~~~ 79 (359)
.++++||+++||+|++
T Consensus 145 ~l~a~eA~~~GliD~v 160 (160)
T cd07016 145 WLTAQEAVELGFADEI 160 (160)
T ss_pred ECcHHHHHHcCCCCcC
Confidence 9999999999999975
No 189
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.69 E-value=4.7e-08 Score=93.25 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=80.4
Q ss_pred EEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
||+|||+|.+|.++|..++.+| .+|.++|+++++.+.....+.+.... . . .....+++++++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-~-----~--------~~~i~~~d~~~l~~ 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-V-----K--------PVRIYAGDYADCKG 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-c-----C--------CeEEeeCCHHHhCC
Confidence 7999999999999999999999 58999999988765433333321100 0 0 01223567788999
Q ss_pred ccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCC-CCcEEee
Q psy9056 300 ADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 300 aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~-~~rvig~ 356 (359)
||+||++++. +..+.+++.+.|.++.+++. ++..++ .+....+....+. +.|++|+
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~gi-iiv~tNP~d~~~~~~~~~sg~p~~~viG~ 140 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAI-LLVVTNPVDVLTYVAYKLSGLPPNRVIGS 140 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE-EEEecCcHHHHHHHHHHHHCcCHHHeecc
Confidence 9999999975 44466777888888876544 433333 3333444455444 4678875
No 190
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.69 E-value=6.4e-08 Score=90.09 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=77.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
.||+|||+|+||++++..+.++|. +|+++|+++++.. .....+. +
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~ 53 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEE 53 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHH
Confidence 379999999999999999999873 4999998875310 0112222 3
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCC---cEEeec
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPD---KVRNMG 357 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~---rvig~h 357 (359)
.+.++|+||+|+|.+ ..+++++++.+++++ .+|+|..+|++.+.+...++... |+++.|
T Consensus 54 ~~~~~D~Vilavkp~--~~~~vl~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~ 115 (260)
T PTZ00431 54 LAKTCDIIVLAVKPD--LAGKVLLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNT 115 (260)
T ss_pred HHHhCCEEEEEeCHH--HHHHHHHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCc
Confidence 467899999999644 478999999888765 56689999999999998876432 444444
No 191
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.67 E-value=4.7e-08 Score=92.87 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=84.4
Q ss_pred EEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 223 VAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 223 I~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
|+|||+|.+|+++|..++..| .+++++|+++++++....++.+..... . ..++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999999 589999999988777666555433210 0 0134445667899999
Q ss_pred cEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056 301 DMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 301 D~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~ 356 (359)
|+||+++.. +..+.+++.+.|.+++ ++.+++..++. +....+....+. +.|++|+
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~ 139 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSGLPKNRVIGS 139 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhCcCHHHEEec
Confidence 999998843 3446777888899988 55655544443 333445455443 4788886
No 192
>PLN02858 fructose-bisphosphate aldolase
Probab=98.66 E-value=7.8e-08 Score=107.46 Aligned_cols=103 Identities=10% Similarity=0.080 Sum_probs=75.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++||+||.|.||.+||..|+++||+|++||+++++.+.... .| ....++. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG-------------GHRCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhc
Confidence 68999999999999999999999999999999988765432 12 1223333 56788
Q ss_pred ccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056 300 ADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAIPI--TKIAAAS 347 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~ 347 (359)
||+||.|+|++..+...++ ..+.+.+.++.+|+..|+.-+- .++++.+
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l 112 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKL 112 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHH
Confidence 9999999998877654444 4577778888888766543322 2444444
No 193
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.66 E-value=5.9e-08 Score=92.31 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=82.4
Q ss_pred EEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
||+|||+|.+|.++|..++..|. +++|+|++++.++....++.+..... .... -+++ +++++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-~~~~----------~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-YSTN----------TKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-CCCC----------EEEE-ECCHHHhCC
Confidence 69999999999999999999987 79999999887666555554322100 0000 0233 467889999
Q ss_pred ccEEEEcccC----------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056 300 ADMVIEAVFE----------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 300 aD~Vi~avp~----------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~ 356 (359)
||+||++.-. +..+.+++.+.+.++. ++.+++..|+. +....+.+..+. +.|++|+
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~ 143 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATEFDYPANKVIGT 143 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHHhCcChhheecc
Confidence 9999987621 2335666777888887 45655544444 444555566664 4788886
No 194
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.65 E-value=8.4e-08 Score=90.57 Aligned_cols=123 Identities=23% Similarity=0.275 Sum_probs=82.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
+||+|||+|.+|+++|..++..++ ++.++|++++..+.-..++.+..... ....++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~------------~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL------------GSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc------------cCceEEecCCChhhhc
Confidence 489999999999999999988765 89999999665444333333221100 0001223324489999
Q ss_pred CccEEEEcc--c------------CCHHHHHHHHHHHHHhCCCCcEEE--EcCCCCcHHHHHhhcCCC-CcEEee
Q psy9056 299 NADMVIEAV--F------------EDINIKHQVIKEIEAVVPPHCVVA--TNTSAIPITKIAAASKRP-DKVRNM 356 (359)
Q Consensus 299 ~aD~Vi~av--p------------~~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~~~~l~~~~~~~-~rvig~ 356 (359)
++|+|+++. | .|..+.+++.+++.++++ +.+++ ||...+....+.+..+.| +|++|+
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~ 142 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVDILTYIAMKFSGFPKNRVIGS 142 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHHHHHHHHHHhcCCCccceecc
Confidence 999999977 3 256678888899999987 55444 444444455666666644 787774
No 195
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.65 E-value=7e-08 Score=92.26 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=83.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
+||+|||+|.+|.++|..++..|+ ++.++|++++.++....++.+..... . . ..+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence 599999999999999999999998 89999999988777666665443111 0 0 1233 46678899
Q ss_pred CccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCC-CCcEEee
Q psy9056 299 NADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 299 ~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~rvig~ 356 (359)
+||+||++.-. +..+.+++...+.++.+ +.+++..++. +....+....+. +.|++|+
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~ 146 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVASNPVDILTYATWKLSGFPKERVIGS 146 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCcHHHHHHHHHHHhCCCHHHEeec
Confidence 99999986622 44466777788888865 5555444443 333444444443 4678775
No 196
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.64 E-value=2.7e-07 Score=86.69 Aligned_cols=93 Identities=10% Similarity=0.088 Sum_probs=64.0
Q ss_pred chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccC
Q psy9056 231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFE 309 (359)
Q Consensus 231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~ 309 (359)
=|.+||..|+++||+|++||++++..+... ++...+.| ...+++. +.++++|+||.|+|.
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd 91 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPF 91 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCC
Confidence 489999999999999999999987653211 01111222 2333443 678999999999995
Q ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH
Q psy9056 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA 344 (359)
Q Consensus 310 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~ 344 (359)
... .++++..+.+.++++++|+.+| ++++..+.
T Consensus 92 ~aa-V~eVl~GLaa~L~~GaIVID~S-TIsP~t~~ 124 (341)
T TIGR01724 92 GKG-TFSIARTIIEHVPENAVICNTC-TVSPVVLY 124 (341)
T ss_pred HHH-HHHHHHHHHhcCCCCCEEEECC-CCCHHHHH
Confidence 554 4566678888899999887554 44444433
No 197
>KOG1495|consensus
Probab=98.59 E-value=2.4e-07 Score=84.26 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=90.7
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP 296 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 296 (359)
+..||.|+|.|.+|.++|..++.+|. ++.++|.++++++....++++.... -...++....|+..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f-------------~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAF-------------LSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccccc-------------ccCCceEecCcccc
Confidence 36899999999999999999999997 8999999999887765555432211 11235777888999
Q ss_pred CCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCC--CCcHHHHHhhcCCC-CcEEee
Q psy9056 297 FKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAASKRP-DKVRNM 356 (359)
Q Consensus 297 l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~-~rvig~ 356 (359)
.+++++||+..- .+.++++.++.++.+|. |+++++..+. .+.........+.| .|+||.
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~yS-pd~~llvvSNPVDilTYv~wKLSgfP~nRViGs 161 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYS-PDCILLVVSNPVDILTYVTWKLSGFPKNRVIGS 161 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCchHHHHHHHHHHcCCcccceecc
Confidence 999999998652 24557777778888884 6676554444 44445666666766 788873
No 198
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.59 E-value=1.7e-07 Score=79.55 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=78.0
Q ss_pred EEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCcc
Q psy9056 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNAD 301 (359)
Q Consensus 223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD 301 (359)
|.|+|+|.||.-+|..|.+.|++|.++++++ .++...+.- . .+.....+..........+. +.....|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQG-------L---TITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHC-------E---EEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhee-------E---EEEecccceecccccccCcchhccCCCc
Confidence 7899999999999999999999999999998 666533210 0 00000000000000001111 2357899
Q ss_pred EEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEE
Q psy9056 302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVR 354 (359)
Q Consensus 302 ~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvi 354 (359)
+||+|+.... .+.+++.+.+++.+++.|++..+|+... .+.+.++. .+++
T Consensus 70 ~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~-~~v~ 120 (151)
T PF02558_consen 70 LVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR-PRVL 120 (151)
T ss_dssp EEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG-SGEE
T ss_pred EEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC-CcEE
Confidence 9999996655 5688999999999999999999998865 55555543 3544
No 199
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.56 E-value=5.3e-07 Score=85.93 Aligned_cols=121 Identities=14% Similarity=0.036 Sum_probs=81.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
+||+|+|+|.||+-+|..|+++|++|++++++.++++...+.-.-.+. ..+.. ..-.... .+.+.....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~---~~g~~-------~~~~~~~-~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV---EQGQA-------SLYAIPA-ETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe---eCCcc-------eeeccCC-CCccccccc
Confidence 379999999999999999999999999999998776655431000000 00100 0000111 111234678
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH-HHHhhcCCCCcEEe
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT-KIAAASKRPDKVRN 355 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~rvig 355 (359)
|+||+|+- .....++++++.+++++++.|++..+|+... .+.+.++ .+++++
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~-~~~v~~ 124 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP-HARCIF 124 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC-CCcEEE
Confidence 99999994 3335578899999999999999999998875 4555554 344543
No 200
>PRK15076 alpha-galactosidase; Provisional
Probab=98.54 E-value=3.8e-07 Score=90.71 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=82.3
Q ss_pred ccEEEEECCCcchHHHHH--HHH----HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 220 VKTVAVLGAGLMGAGIAH--VTV----DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~--~l~----~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
|.||+|||+|+||.+.+. .++ ..|.+|+++|+++++++.....+++.+... + ..-+++.++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 469999999999977666 443 235699999999999886555454443322 1 0125677888
Q ss_pred c-CCCCCccEEEEcccCC----H---------------------------------HHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 294 Y-DPFKNADMVIEAVFED----I---------------------------------NIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 294 ~-~~l~~aD~Vi~avp~~----~---------------------------------~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
. +++++||+||+++-.. . .+.+++.+.|.+++ |+.+|+..|
T Consensus 69 ~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~t 147 (431)
T PRK15076 69 RREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYV 147 (431)
T ss_pred HHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcC
Confidence 4 8899999999877321 1 14556778888887 567777666
Q ss_pred CCCcH-HHHHhhcCCCCcEEee
Q psy9056 336 SAIPI-TKIAAASKRPDKVRNM 356 (359)
Q Consensus 336 s~~~~-~~l~~~~~~~~rvig~ 356 (359)
+...+ +.....+ .+.|+||+
T Consensus 148 NP~divt~~~~~~-~~~rviG~ 168 (431)
T PRK15076 148 NPMAMNTWAMNRY-PGIKTVGL 168 (431)
T ss_pred ChHHHHHHHHhcC-CCCCEEEE
Confidence 65533 3333333 35789986
No 201
>PLN02858 fructose-bisphosphate aldolase
Probab=98.53 E-value=2.9e-07 Score=102.99 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=71.3
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
.+++|||||.|+||.+||..|+++|++|++||+++++.+.... .| ....++. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-----------AG-------------GLAGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHH
Confidence 3589999999999999999999999999999999987665321 11 1112233 567
Q ss_pred CCccEEEEcccCCHHHHHHHH--HHHHHhCCCCcEEEEcCCCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVI--KEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~ 338 (359)
++||+||.|+|++..+...++ ..+.+.+.++.+++..|+.-
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvs 421 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVS 421 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCC
Confidence 899999999997776544443 34666778888887665543
No 202
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.53 E-value=4e-07 Score=81.35 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=69.7
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCC---HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF---EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY 294 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (359)
.-.+|+|+|+|.+|+.+|..+++.|+ +|+++|.+ ++.+.... ... . ..|+.........+.++....+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~----~--~iG~~Ka~~~~~~l~~inp~~~i 92 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKA----S--QVGEPKTEALKENISEINPYTEI 92 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CCh----h--hCCCHHHHHHHHHHHHHCCCCEE
Confidence 33789999999999999999999999 79999999 55544311 000 0 11111111122222222221111
Q ss_pred -------------CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056 295 -------------DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332 (359)
Q Consensus 295 -------------~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~ 332 (359)
+.+.++|+||+| .++...+..+++.+....+...++.
T Consensus 93 ~~~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 93 EAYDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred EEeeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 136789999999 6898888888999888877666665
No 203
>KOG2711|consensus
Probab=98.52 E-value=1.6e-07 Score=88.21 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=82.5
Q ss_pred CCCCCCccEEEEECCCcchHHHHHHHHHC--C-----CeeEEecCCHHHHH---HHHHHHH--HhHHHHHhhccCChHHH
Q psy9056 214 GKPQTPVKTVAVLGAGLMGAGIAHVTVDK--G-----YNTIVKDSFEKGLA---RGLGQIK--TGLDGAVKRKKMSALDR 281 (359)
Q Consensus 214 ~~~~~~~~kI~IIG~G~mG~~iA~~l~~~--G-----~~V~l~d~~~~~l~---~~~~~~~--~~l~~~~~~~~~~~~~~ 281 (359)
+...+.-.||+|||+|+||++||..+..+ + .+|.+|-...+.-. ...+-|+ +.--++++..+
T Consensus 15 ~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------ 88 (372)
T KOG2711|consen 15 GKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------ 88 (372)
T ss_pred CchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------
Confidence 33445567999999999999999988775 2 26888855443222 2222222 11112333322
Q ss_pred HhhhcccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 282 DRYLASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 282 ~~~~~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
...++..++|+ +++.++|++|..+|.+. ...++++|..+.+++...+|.+.|+..
T Consensus 89 --lP~NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 89 --LPENVVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred --CCCCeEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceec
Confidence 33578888888 78899999999999766 679999999999999999998887664
No 204
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.46 E-value=3.5e-07 Score=87.27 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=81.5
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD 295 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 295 (359)
+||+|+|+ |.+|..++..++..|+ +|+++|+++ ++++.....+.+.+. ..+ ...++.++++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~---~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALA---AAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchh---ccC---------CCcEEEECCCHH
Confidence 48999998 9999999999999997 499999965 444433333332111 111 001355566787
Q ss_pred CCCCccEEEEcccC------C--------HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcCC-CCcEEee
Q psy9056 296 PFKNADMVIEAVFE------D--------INIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASKR-PDKVRNM 356 (359)
Q Consensus 296 ~l~~aD~Vi~avp~------~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~rvig~ 356 (359)
++.+||+||.++.. + ..+.+.+.+.|.++++ +.+|+..++..++ ..+....+. +.|++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 89999999998841 1 1456677778888875 6666666665554 345555554 4788886
No 205
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=98.45 E-value=7.4e-07 Score=85.38 Aligned_cols=122 Identities=19% Similarity=0.109 Sum_probs=83.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG 290 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 290 (359)
-||+|||+ |.+|.++|..+...|+ +++|+|+++ ++++....++.+..... ..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~--------------~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPL--------------LAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccc--------------cCCcEE
Confidence 48999998 9999999999999886 899999965 33444333343322100 011222
Q ss_pred -ccCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhc-CCC-C
Q psy9056 291 -TLSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAAS-KRP-D 351 (359)
Q Consensus 291 -~~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~-~~~-~ 351 (359)
+++++++++||+||++.-. +..+.+++.++|.++++++.+++..|+.+. ..-+.+.+ +.| .
T Consensus 70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~ 149 (323)
T TIGR01759 70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPK 149 (323)
T ss_pred ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHH
Confidence 4567899999999986621 345677888899999876777766665544 34556666 654 7
Q ss_pred cEEee
Q psy9056 352 KVRNM 356 (359)
Q Consensus 352 rvig~ 356 (359)
||+|+
T Consensus 150 rViG~ 154 (323)
T TIGR01759 150 NFSAM 154 (323)
T ss_pred HEEEe
Confidence 88886
No 206
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.45 E-value=1.2e-06 Score=83.48 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=84.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
+||.|+|+|.||+-++..|+++|++|+++.|++. ++..++. .+.-....+ .........++.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~---GL~i~~~~~--------~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK---GLRIEDEGG--------NFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC---CeEEecCCC--------ccccccccccChhhcCCC
Confidence 4899999999999999999999988999888875 5554432 000000000 000112223334567799
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEe
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRN 355 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig 355 (359)
|+||+++-... ..++++.+.++++++++|++..+|+...+........+++++
T Consensus 69 Dlviv~vKa~q--~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~ 121 (307)
T COG1893 69 DLVIVTVKAYQ--LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLG 121 (307)
T ss_pred CEEEEEecccc--HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEE
Confidence 99999995444 678999999999999999999999998764444444444443
No 207
>PRK05442 malate dehydrogenase; Provisional
Probab=98.44 E-value=5.6e-07 Score=86.32 Aligned_cols=123 Identities=17% Similarity=0.081 Sum_probs=83.0
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHH--HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEK--GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV 289 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~--~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 289 (359)
..||+|||+ |.+|.++|..+...|. +++|+|++++ +++....++.+..... ..+..
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~--------------~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL--------------LAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh--------------cCCcE
Confidence 369999998 9999999999998775 7999999653 3443333333322111 01112
Q ss_pred c-ccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-CCC-
Q psy9056 290 G-TLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-KRP- 350 (359)
Q Consensus 290 ~-~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~- 350 (359)
+ +++++++++||+||++.- .+..+.+++.+.|.++.+++.+++..|+...+ .-+.... +.|
T Consensus 70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~ 149 (326)
T PRK05442 70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPA 149 (326)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCH
Confidence 2 456789999999998652 13456777888899988778877766665543 3455555 544
Q ss_pred CcEEee
Q psy9056 351 DKVRNM 356 (359)
Q Consensus 351 ~rvig~ 356 (359)
+||+|+
T Consensus 150 ~rViG~ 155 (326)
T PRK05442 150 ENFTAM 155 (326)
T ss_pred HHEEee
Confidence 789886
No 208
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.41 E-value=8e-07 Score=84.11 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=63.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||.|+||.++|..+...|++|++|++.....+.+. .. ..... +. +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~-------------G~~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------AD-------------GFEVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------Hc-------------CCEEC-CHHHHHhc
Confidence 7899999999999999999999999999986533222111 00 11222 33 56899
Q ss_pred ccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEE
Q psy9056 300 ADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVAT 333 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s 333 (359)
||+|+.++|...+ +.++ .++.+.++++++++-
T Consensus 72 ADVV~llLPd~~t--~~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 72 AQVVQMLLPDEQQ--AHVYKAEVEENLREGQMLLF 104 (335)
T ss_pred CCEEEEeCCChHH--HHHHHHHHHhcCCCCCEEEE
Confidence 9999999997443 4565 568899999997753
No 209
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=1.2e-06 Score=78.65 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=70.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----CC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY----DP 296 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~ 296 (359)
++|+.||.|.||..++..+.+.||+|+.||+|++..+.+... + .+..+++ ..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~-----------g-------------a~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDE-----------G-------------ATGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhc-----------C-------------CccccCHHHHHHh
Confidence 479999999999999999999999999999999988876542 1 1111111 34
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
+...-.|-..+|.. ++...+++++.+.+..+.+|+...++.
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~ 97 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSN 97 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccc
Confidence 55667788888754 236788999999999999998866554
No 210
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.39 E-value=5.3e-07 Score=86.89 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=75.5
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|+|||.|.||..+|..+...|.+|+.||+++..... ...+ ... .++ +.++
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~ 203 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLR 203 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHh
Confidence 379999999999999999999999999999998643110 0000 111 233 4579
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
+||+|+.++|.+.+.+.-+-++..+.++++.+++..+.+-.+ ..+.+.+.
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 999999999988876665556777889999999877665433 45555554
No 211
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=98.39 E-value=2.9e-06 Score=84.12 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=88.1
Q ss_pred cEEEEECC-CcchHHHHHHHHHC-------CC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDK-------GY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV- 289 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~-------G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~- 289 (359)
-||+|||+ |.+|..+|..++.. |+ +++++|++.++++....++++...... .++.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--------------~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--------------REVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--------------CceEE
Confidence 59999999 99999999999988 65 899999999998877666665432211 1233
Q ss_pred cccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-CCCc
Q psy9056 290 GTLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-RPDK 352 (359)
Q Consensus 290 ~~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~r 352 (359)
.+++++++++||+||++.- .+..+.+++.+.|.++..++.+|+..++...+ ..+.+..+ .|.|
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~r 246 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAK 246 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcc
Confidence 2467789999999998662 13456777778888866677777666665443 34445554 4578
Q ss_pred EEee
Q psy9056 353 VRNM 356 (359)
Q Consensus 353 vig~ 356 (359)
+||.
T Consensus 247 ViGt 250 (444)
T PLN00112 247 NFHA 250 (444)
T ss_pred eEEe
Confidence 8875
No 212
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.37 E-value=6.3e-07 Score=76.31 Aligned_cols=94 Identities=23% Similarity=0.256 Sum_probs=63.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH-HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK-GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
-++|+|||.|+.|.+.|..|..+|++|++-.+... ..+++. + +.+.+.+..|+++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~-------------~Gf~v~~~~eAv~ 59 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------A-------------DGFEVMSVAEAVK 59 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------H-------------TT-ECCEHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------H-------------CCCeeccHHHHHh
Confidence 37999999999999999999999999999988766 333222 1 2233333336789
Q ss_pred CccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcH
Q psy9056 299 NADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
.+|+|+..+|+.. ..+++ ++|.++++++..++ .+.+..+
T Consensus 60 ~aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~-fahGfni 99 (165)
T PF07991_consen 60 KADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLV-FAHGFNI 99 (165)
T ss_dssp C-SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEE-ESSSHHH
T ss_pred hCCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEE-eCCcchh
Confidence 9999999999766 45787 78999999999875 3444443
No 213
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.37 E-value=7.1e-07 Score=86.03 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=70.0
Q ss_pred cEEEEECCCcchHHHHHHHH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
++|+|||.|.||.++|..++ ..|.+|+.||+++..... . .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~----------~-----------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA----------T-----------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH----------h-----------------hccccCCHHHHHH
Confidence 58999999999999999994 468899999988653110 0 01122344 4578
Q ss_pred CccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056 299 NADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSAIPI--TKIAAAS 347 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~ 347 (359)
+||+|+.++|.+..... ++ ....+.++++++|++.+.|..+ ..+.+.+
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 99999999998776533 33 4566778999999887776554 3444444
No 214
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.36 E-value=9.7e-07 Score=84.59 Aligned_cols=122 Identities=18% Similarity=0.075 Sum_probs=81.0
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG 290 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 290 (359)
.||+|||+ |.+|.++|..++..|. +++|+|++++. ++....++.+.... ...++.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~--------------~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFP--------------LLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhcccc--------------ccCceEE
Confidence 59999999 9999999999999887 79999996532 33333333322100 0011222
Q ss_pred -ccCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-C-CC
Q psy9056 291 -TLSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-R-PD 351 (359)
Q Consensus 291 -~~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~-~~ 351 (359)
+++++++++||+||++.-. +..+.+++...|.++.+++.+++..|+.+.+ ..+....+ . +.
T Consensus 69 ~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~ 148 (322)
T cd01338 69 TDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPD 148 (322)
T ss_pred ecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChH
Confidence 4567899999999987621 3456777888899998657766666655443 34555552 3 47
Q ss_pred cEEee
Q psy9056 352 KVRNM 356 (359)
Q Consensus 352 rvig~ 356 (359)
+++|+
T Consensus 149 ~ViG~ 153 (322)
T cd01338 149 NFTAM 153 (322)
T ss_pred heEEe
Confidence 88886
No 215
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.36 E-value=1.4e-06 Score=82.84 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=78.4
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-c-C--
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-L-S-- 293 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~-~-- 293 (359)
.||+|||+ |.+|+++|..++..|+ +++++|++ +++....++++.. ..-.+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~----------------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN----------------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC----------------CcceEEEecCCCch
Confidence 38999999 9999999999999985 89999998 3332222233221 00134422 3 2
Q ss_pred cCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-----H-HHHhhcCC-CCc
Q psy9056 294 YDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIPI-----T-KIAAASKR-PDK 352 (359)
Q Consensus 294 ~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-----~-~l~~~~~~-~~r 352 (359)
++++++||+||++.- .+..+.+++.+.|.++. |+.+|+..|+...+ + .+....+. ++|
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~r 141 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKAGVYDPKR 141 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHhcCCCHHH
Confidence 689999999998762 24556777888899985 57776666665533 3 34445554 468
Q ss_pred EEee
Q psy9056 353 VRNM 356 (359)
Q Consensus 353 vig~ 356 (359)
|+|+
T Consensus 142 viG~ 145 (310)
T cd01337 142 LFGV 145 (310)
T ss_pred EEee
Confidence 9886
No 216
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.35 E-value=1e-06 Score=75.00 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=72.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
-++|+|+|+|.||.+++..+.+.| ++|+++|+++++.+...+.+... . . ... ..+. +.+
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~----------~~~-~~~~~~~~ 79 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-I----------AIA-YLDLEELL 79 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-c----------cee-ecchhhcc
Confidence 368999999999999999999996 79999999998876654332210 0 0 011 1222 347
Q ss_pred CCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcC-CCCcEEeec
Q psy9056 298 KNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASK-RPDKVRNMG 357 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~-~~~rvig~h 357 (359)
.++|+||.|+|.+.. .....+. ...+++++++++.++.-..+.+.+.+. ...+++.+|
T Consensus 80 ~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 80 AEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGL 139 (155)
T ss_pred ccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence 899999999998763 1111111 123578888876655432224433332 234566554
No 217
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=98.33 E-value=1.1e-06 Score=83.71 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=77.7
Q ss_pred EEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-c-cC--c
Q psy9056 222 TVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-T-LS--Y 294 (359)
Q Consensus 222 kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~-~~--~ 294 (359)
||+|||+ |.+|.++|..++..|+ +++|+|+++ .+....++.+.. ...++.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~----------------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP----------------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC----------------cCceEEEecCCCchH
Confidence 6999999 9999999999999886 899999987 221111122110 0012332 2 23 6
Q ss_pred CCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc-----H-HHHHhhcCC-CCcE
Q psy9056 295 DPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP-----I-TKIAAASKR-PDKV 353 (359)
Q Consensus 295 ~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~-~~l~~~~~~-~~rv 353 (359)
+++++||+||++.- .+..+.+++.+.|.++. |+.+|+..|+... + ..+....+. ++||
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rV 141 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKL 141 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhcCCChHHE
Confidence 89999999998662 35567778888899985 5676666666553 2 344455554 4689
Q ss_pred Eee
Q psy9056 354 RNM 356 (359)
Q Consensus 354 ig~ 356 (359)
+|+
T Consensus 142 iG~ 144 (312)
T TIGR01772 142 FGV 144 (312)
T ss_pred Eee
Confidence 886
No 218
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=98.32 E-value=5.1e-06 Score=81.17 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=85.3
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCC-------eeEEe--cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGY-------NTIVK--DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV- 289 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~--d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~- 289 (359)
-||+|||+ |.+|.++|..++..|. .++|+ |++.++++.....+.+..... ..++.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~--------------~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPL--------------LREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhh--------------cCceEE
Confidence 59999999 9999999999999875 24445 888888777666665443111 11233
Q ss_pred cccCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC-CCCc
Q psy9056 290 GTLSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK-RPDK 352 (359)
Q Consensus 290 ~~~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~r 352 (359)
.+++++++++||+||++.-. +..+.+++.+.|.++.+++.+|+..++...+ ..+....+ .|.|
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~r 190 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRK 190 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCccc
Confidence 24567899999999986521 3456777888899988788877766665443 34555553 4578
Q ss_pred EEee
Q psy9056 353 VRNM 356 (359)
Q Consensus 353 vig~ 356 (359)
+||+
T Consensus 191 viG~ 194 (387)
T TIGR01757 191 NFHA 194 (387)
T ss_pred EEEe
Confidence 8874
No 219
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=98.30 E-value=1e-06 Score=83.59 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=79.7
Q ss_pred EECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccE
Q psy9056 225 VLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADM 302 (359)
Q Consensus 225 IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~ 302 (359)
|||+|.+|.++|..++..++ ++.++|++++.++....++++....... . -.+. .++++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPT-P-----------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCC-C-----------eEEe-cCCHHHHCCCCE
Confidence 79999999999999999987 7999999988776665555543211000 0 0122 456789999999
Q ss_pred EEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcCCC-CcEEee
Q psy9056 303 VIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASKRP-DKVRNM 356 (359)
Q Consensus 303 Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~rvig~ 356 (359)
||++.-. +..+.+++.+.+.++. ++.+++..|+. +....+....+.| .|++|+
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~ 137 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKLSGFPKNRVIGS 137 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEec
Confidence 9997632 4446677778888885 55655544443 3344555555544 678775
No 220
>PLN00106 malate dehydrogenase
Probab=98.30 E-value=2.1e-06 Score=82.23 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=76.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccC---
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLS--- 293 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~--- 293 (359)
.||+|||+ |.+|..+|..++..++ +++++|+++ .+.....+.+... . -.+. ++++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~---------------~-~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT---------------P-AQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc---------------C-ceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 1111111211100 0 0122 1233
Q ss_pred cCCCCCccEEEEcc--------------cCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc-----HH-HHHhhcC-CCCc
Q psy9056 294 YDPFKNADMVIEAV--------------FEDINIKHQVIKEIEAVVPPHCVVATNTSAIP-----IT-KIAAASK-RPDK 352 (359)
Q Consensus 294 ~~~l~~aD~Vi~av--------------p~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~-~l~~~~~-~~~r 352 (359)
+++++++|+||.+. +.+..+.+++++.+.++. ++.+|+..|+... .+ .+....+ +|.+
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~ 159 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKK 159 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCcce
Confidence 47899999999865 235557777888899887 5666665555553 23 3444444 4689
Q ss_pred EEee
Q psy9056 353 VRNM 356 (359)
Q Consensus 353 vig~ 356 (359)
++|+
T Consensus 160 viG~ 163 (323)
T PLN00106 160 LFGV 163 (323)
T ss_pred EEEE
Confidence 9986
No 221
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.29 E-value=3e-06 Score=80.92 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=74.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|+|||.|.||..+|..+...|.+|+.||++++..... .......++ +.++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~ 189 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLS 189 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHh
Confidence 3799999999999999999999999999999876421100 001111233 4579
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~ 348 (359)
+||+|+.++|.+.+...-+-++..+.++++.+++..+-| +.-..+.+.+.
T Consensus 190 ~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 190 QTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred cCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 999999999999887666666777788999998876654 33345555554
No 222
>PLN03139 formate dehydrogenase; Provisional
Probab=98.27 E-value=2.4e-06 Score=83.57 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=75.5
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|||||.|.||..+|..+...|.+|+.||++....+... +. .+....++ +.++
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~ 254 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ET-------------GAKFEEDLDAMLP 254 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hc-------------CceecCCHHHHHh
Confidence 36899999999999999999999999999998753211100 00 12223344 4578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
+||+|+.++|.+.+.+.-+-+++.+.++++.+|+..+-|-.+ ..+.+.+.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 999999999988886665556788889999999876655333 35555554
No 223
>PRK07574 formate dehydrogenase; Provisional
Probab=98.27 E-value=3.1e-06 Score=82.83 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=74.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||.|.||..+|..+...|.+|+.||++....+... .. .+....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------EL-------------GLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hc-------------CceecCCHHHHhhc
Confidence 6899999999999999999999999999999863211100 00 11222334 45799
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
||+|++++|-+.+...-+=++....++++.++++.+.+-.+ ..+.+.+.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 99999999988876544445677788999999876665433 35555554
No 224
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.23 E-value=3e-06 Score=80.56 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=72.2
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|||||.|.||..+|..+...|.+|+.||++... + +. .....++ +.++
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-~----------------~~------------~~~~~~l~ell~ 172 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-D----------------GI------------SSIYMEPEDIMK 172 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-c----------------Cc------------ccccCCHHHHHh
Confidence 379999999999999999888889999999987421 0 00 0001233 4578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~ 348 (359)
+||+|+.++|.+.+...-+-++..+.++++.+++..+.+-. ...+.+.+.
T Consensus 173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999998887655454667777899999887665533 345655554
No 225
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.22 E-value=1.5e-06 Score=83.27 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=80.0
Q ss_pred EEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-
Q psy9056 222 TVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG- 290 (359)
Q Consensus 222 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~- 290 (359)
||+|+|+ |.+|..++..++..|+ +++++|+++ +.++.....+.+.... ......+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~--------------~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFP--------------LLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhccc--------------ccCCcEEe
Confidence 7999999 9999999999998764 599999987 5433322222221100 0111222
Q ss_pred ccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC--CCCc
Q psy9056 291 TLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK--RPDK 352 (359)
Q Consensus 291 ~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~--~~~r 352 (359)
.++++++++||+||.+.- .+..+.+++...|.++++++.+++..|+... ...+....+ ++.|
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ 147 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKN 147 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHH
Confidence 345688999999998651 1455777888889999756776665565443 345556666 3578
Q ss_pred EEee
Q psy9056 353 VRNM 356 (359)
Q Consensus 353 vig~ 356 (359)
|+|+
T Consensus 148 vig~ 151 (323)
T cd00704 148 FTAL 151 (323)
T ss_pred EEEe
Confidence 8876
No 226
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.16 E-value=2e-06 Score=88.67 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=74.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEE------eccc------cCCCCCCCcchHhHHhh--------------------
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGL------GLPE------VMLGLLPGAGGTQRLPK-------------------- 48 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~------~~pe------~~~Gi~p~~g~~~~l~~-------------------- 48 (359)
++|.+||.-++++||.++|.+. +.+ +++. .++|+.|+...+..+..
T Consensus 387 g~aaSggY~iA~aaD~I~a~p~--t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~ 464 (584)
T TIGR00705 387 AMAASGGYWIASAADYIVASPN--TITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVE 464 (584)
T ss_pred CccccHHHHHHHhCCEEEECCC--CeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999987 766 6663 68999998777765543
Q ss_pred --------hcChHH-----HHHHHhcCCCCCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9056 49 --------LTALPN-----VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112 (359)
Q Consensus 49 --------~~g~~~-----a~~~~ltg~~~~a~eA~~~Glv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 112 (359)
.++..+ ..+.+.+|+.++++||+++||||++-.- +.+.+.+.+++..
T Consensus 465 ~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~-----------------~~Ai~~a~~la~~ 524 (584)
T TIGR00705 465 AGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL-----------------DEAVAKAAKLAHC 524 (584)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH-----------------HHHHHHHHHHcCC
Confidence 555554 7788899999999999999999999532 4566677788776
No 227
>PTZ00325 malate dehydrogenase; Provisional
Probab=98.15 E-value=5.5e-06 Score=79.26 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCCccEEEEECC-CcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 217 QTPVKTVAVLGA-GLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 217 ~~~~~kI~IIG~-G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
..+|+||+|||+ |.+|+.+|..++..+ .+++++|++. .+.-...+.+... . -.+...++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~~~---------------~-~~v~~~td 66 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHIDT---------------P-AKVTGYAD 66 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--CcccccchhhcCc---------------C-ceEEEecC
Confidence 367889999999 999999999999666 4899999932 1111111221100 0 12222222
Q ss_pred ----cCCCCCccEEEEccc--C------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH-HHHH-----hhcC-
Q psy9056 294 ----YDPFKNADMVIEAVF--E------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI-TKIA-----AASK- 348 (359)
Q Consensus 294 ----~~~l~~aD~Vi~avp--~------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~l~-----~~~~- 348 (359)
+++++++|+||.+.- . +..+.+.+++.+.++ .++.+|+..|.++.+ ..+. ...+
T Consensus 67 ~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~sg~ 145 (321)
T PTZ00325 67 GELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAGVY 145 (321)
T ss_pred CCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhccCC
Confidence 678999999998762 1 222555677778887 456666666665443 2222 3343
Q ss_pred CCCcEEee
Q psy9056 349 RPDKVRNM 356 (359)
Q Consensus 349 ~~~rvig~ 356 (359)
+|++++|+
T Consensus 146 p~~~viG~ 153 (321)
T PTZ00325 146 DPRKLFGV 153 (321)
T ss_pred Chhheeec
Confidence 56889886
No 228
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.11 E-value=5.3e-06 Score=77.14 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=67.9
Q ss_pred HHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHH
Q psy9056 235 IAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDIN 312 (359)
Q Consensus 235 iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~ 312 (359)
+|..|.++| ++|+.||++++.++.+.+ .|..+. ..++.+.+.++|+||+|+|.+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-----------~g~~~~-----------~~~~~~~~~~~DlvvlavP~~~- 57 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE-----------LGIIDE-----------ASTDIEAVEDADLVVLAVPVSA- 57 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-----------TTSSSE-----------EESHHHHGGCCSEEEE-S-HHH-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-----------CCCeee-----------ccCCHhHhcCCCEEEEcCCHHH-
Confidence 578889999 689999999988665432 222211 1122356899999999998655
Q ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcCCCCcEEeecC
Q psy9056 313 IKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 313 ~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~rvig~h~ 358 (359)
...+++++.++++++++|++.+|.. .+..+.+..+...++||+|+
T Consensus 58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP 104 (258)
T PF02153_consen 58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP 104 (258)
T ss_dssp -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE
T ss_pred -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC
Confidence 6799999999999999998777653 23456666665679999996
No 229
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=98.09 E-value=1.3e-05 Score=77.04 Aligned_cols=121 Identities=16% Similarity=0.105 Sum_probs=77.7
Q ss_pred EEEEECC-CcchHHHHHHHHHCCC-------eeEEecCCHHH--HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc
Q psy9056 222 TVAVLGA-GLMGAGIAHVTVDKGY-------NTIVKDSFEKG--LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT 291 (359)
Q Consensus 222 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 291 (359)
+|+|||+ |.+|+.++..+...|+ +++|+|++++. ++.....+.+... .....+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~--------------~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAF--------------PLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccc--------------hhcCceecc
Confidence 6899999 9999999999998665 59999996542 2222122221110 011223333
Q ss_pred -cCcCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-CCCCcE
Q psy9056 292 -LSYDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-KRPDKV 353 (359)
Q Consensus 292 -~~~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~~rv 353 (359)
++++++++||+||++.-. +..+.+++.+.|.++++++.+++..|+.+.+ ..+.+.. ..|.++
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~v 146 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKN 146 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcce
Confidence 346899999999986521 3335667778899987677777666665443 4455666 455667
Q ss_pred Eee
Q psy9056 354 RNM 356 (359)
Q Consensus 354 ig~ 356 (359)
+|+
T Consensus 147 ig~ 149 (324)
T TIGR01758 147 FSA 149 (324)
T ss_pred EEE
Confidence 774
No 230
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.09 E-value=3.3e-06 Score=74.09 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=69.8
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|+|||.|.+|..+|..+..-|.+|+.||++....+... . ... ...++ +.++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~-~~~~l~ell~ 90 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGV-EYVSLDELLA 90 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTE-EESSHHHHHH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccc-eeeehhhhcc
Confidence 37999999999999999999999999999999987533110 0 011 12234 4578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
.||+|+.++|-+.+...-+=++..+.++++.++++.+-|--+ +.+.+.+.
T Consensus 91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 899999999976653333335566678999999876655333 45555553
No 231
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.08 E-value=7.1e-06 Score=82.16 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=66.1
Q ss_pred chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC----CCCCccEEEEc
Q psy9056 231 MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD----PFKNADMVIEA 306 (359)
Q Consensus 231 mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~l~~aD~Vi~a 306 (359)
||..||..|+++||+|.+||+++++.+...+.. +. -..+....+.+ .++.+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~----------g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEE----------GK---------GKKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh----------CC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 899999999999999999999999877654310 00 01133334442 23458999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056 307 VFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341 (359)
Q Consensus 307 vp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 341 (359)
+|.... .++++..+.+++.++.||+..+++.+..
T Consensus 62 v~~g~~-v~~Vi~~l~~~l~~GdiiID~gn~~~~~ 95 (459)
T PRK09287 62 VKAGAP-VDAVIEQLLPLLEKGDIIIDGGNSNYKD 95 (459)
T ss_pred CCCchH-HHHHHHHHHhcCCCCCEEEECCCCCHHH
Confidence 998765 5667788999999999998877655443
No 232
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.05 E-value=2.4e-05 Score=73.25 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=55.2
Q ss_pred CCccEEEEECCCcchHHHHHHHHHC--CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDK--GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY 294 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (359)
|+..||||||+|.||..++..+.+. +++|. ++|+++++.+.....+ +.....+++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~----------------------g~~~~~~~~ 61 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL----------------------RRPPPVVPL 61 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc----------------------CCCcccCCH
Confidence 5567999999999999999999874 77775 8899988755432211 001122334
Q ss_pred -CCCCCccEEEEcccCCHHHHHHHHHHHH
Q psy9056 295 -DPFKNADMVIEAVFEDINIKHQVIKEIE 322 (359)
Q Consensus 295 -~~l~~aD~Vi~avp~~~~~k~~v~~~l~ 322 (359)
+.+.++|+|++|+|.+.. .++.....
T Consensus 62 eell~~~D~Vvi~tp~~~h--~e~~~~aL 88 (271)
T PRK13302 62 DQLATHADIVVEAAPASVL--RAIVEPVL 88 (271)
T ss_pred HHHhcCCCEEEECCCcHHH--HHHHHHHH
Confidence 335779999999997663 45544443
No 233
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.01 E-value=1e-05 Score=77.59 Aligned_cols=103 Identities=20% Similarity=0.176 Sum_probs=72.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecC-CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDS-FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
=++|||||.|.+|+.+|..+..-|.+|+.||+ .+...+.. .......++ +.+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL 195 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELL 195 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHH
Confidence 37999999999999999999999999999999 33321110 112233445 458
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK 348 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~ 348 (359)
+.||+|+..+|-..+.+.-+=.+....++++.+++.++-|-- -..+.+.+.
T Consensus 196 ~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 999999999998887544444556667899998876554433 235555554
No 234
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.99 E-value=1.3e-05 Score=81.89 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=72.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||.|.||..+|..+...|.+|+.||+.... +... +. .+...+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~-------------g~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QL-------------GVELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hc-------------CCEEcCCHHHHHhh
Confidence 78999999999999999999999999999985321 1100 00 11222344 45789
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~ 348 (359)
||+|+.++|-+.+.+.-+=++..+.++++++++..+-|-- -..+.+.+.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 9999999998876544333556667899998887766533 345666554
No 235
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.98 E-value=2.8e-05 Score=69.21 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=55.6
Q ss_pred EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
+|+|||+ |.||.-++..|.++|++|+ +.+|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECCC
Confidence 8999998 9999999999999999985 2468
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEEeecC
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNMGR 358 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvig~h~ 358 (359)
|+||+|+|.+. ..++++++. .+|++.+|... .+.+. ..+++|+|+
T Consensus 33 DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HP 77 (197)
T PRK06444 33 DHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHP 77 (197)
T ss_pred CEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCC
Confidence 99999999665 346666543 25666666433 23222 347999997
No 236
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=97.95 E-value=1.4e-05 Score=68.81 Aligned_cols=77 Identities=17% Similarity=0.080 Sum_probs=56.7
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCc----------chHhHHhhh---------cChHHHHHHHhc
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGA----------GGTQRLPKL---------TALPNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~----------g~~~~l~~~---------~g~~~a~~~~lt 61 (359)
|.|.++|+.|+++||.|++.++ +.|++..+..+..... .....+.+. +......+++..
T Consensus 66 g~~~s~g~~la~~~d~~~~~~~--a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~ 143 (161)
T cd00394 66 GQAASAGYYIATAANKIVMAPG--TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEK 143 (161)
T ss_pred ChhHHHHHHHHhCCCEEEECCC--CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcC
Confidence 5688999999999999999988 9999998886654322 000011111 122346677888
Q ss_pred CCCCCHHHHHHcCCccee
Q psy9056 62 GKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~ 79 (359)
+..++++||+++||||++
T Consensus 144 ~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 144 DLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CcEEcHHHHHHcCCcCcC
Confidence 999999999999999975
No 237
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.94 E-value=3.7e-05 Score=71.75 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=57.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCC--Ce-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG--YN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G--~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
.||+|||+|.||..++..+.+.+ ++ +.++|+++++.+...+.. .....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-----------------------~~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-----------------------GAKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-----------------------CCeeECCHHHH
Confidence 58999999999999999998763 55 568899988765432210 11223444 33
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT 333 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s 333 (359)
+.++|+|++|+|.+. ..++..++.+. +.+.++.+
T Consensus 59 l~~~DvVvi~a~~~~--~~~~~~~al~~-Gk~Vvv~s 92 (265)
T PRK13304 59 VEDVDLVVECASVNA--VEEVVPKSLEN-GKDVIIMS 92 (265)
T ss_pred hcCCCEEEEcCChHH--HHHHHHHHHHc-CCCEEEEc
Confidence 588999999997544 44665555443 34444433
No 238
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.94 E-value=0.00011 Score=73.20 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=78.1
Q ss_pred cEEEEECCCcc-hHHHHHHHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056 221 KTVAVLGAGLM-GAGIAHVTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY 294 (359)
Q Consensus 221 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (359)
.||+|||+|+. ...+...+.+. +-+|.++|+|+++++....-.+.. .+....+ -++..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~----~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRY----VEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCCH
Confidence 38999999883 33445555544 358999999999988743333322 2221110 146678888
Q ss_pred -CCCCCccEEEEccc----------------------------------CCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056 295 -DPFKNADMVIEAVF----------------------------------EDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 295 -~~l~~aD~Vi~avp----------------------------------~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 339 (359)
+++.+||+||.++- .+..+..++.+.+.+++ |+.+++..|+...
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~d 147 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAG 147 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHH
Confidence 78999999996542 13336667888899987 5676665555443
Q ss_pred --HHHHHhhcCCCCcEEee
Q psy9056 340 --ITKIAAASKRPDKVRNM 356 (359)
Q Consensus 340 --~~~l~~~~~~~~rvig~ 356 (359)
...+...+ ++.|+||+
T Consensus 148 i~t~a~~~~~-p~~rviG~ 165 (425)
T cd05197 148 EVTEAVRRYV-PPEKAVGL 165 (425)
T ss_pred HHHHHHHHhC-CCCcEEEE
Confidence 34454443 45789985
No 239
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.93 E-value=2.7e-05 Score=73.50 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=62.8
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
-++|+|+|.|.+|..+|..+...|.+|+++++++++++.... .+. . .+. ..++ +.+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~-----------~g~-~---------~~~-~~~l~~~l~ 208 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITE-----------MGL-I---------PFP-LNKLEEKVA 208 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CCC-e---------eec-HHHHHHHhc
Confidence 379999999999999999999999999999999876543211 010 0 000 1122 4578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
++|+||.++|...- -++..+.++++++|++.++
T Consensus 209 ~aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 209 EIDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred cCCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence 99999999985421 1334455678888876655
No 240
>PLN02928 oxidoreductase family protein
Probab=97.91 E-value=1.8e-05 Score=76.66 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=73.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||.|.||..+|..+...|.+|+.||++........ .. + ... ......+......++ +.++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~--~~--~----~~~-----~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG--LL--I----PNG-----DVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh--hc--c----ccc-----cccccccccCcccCHHHHHhh
Confidence 7999999999999999999999999999998743211000 00 0 000 000000000011234 45799
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~ 348 (359)
||+|+.++|-+.+...-+-++..+.++++.+|++.+-|- .-..+.+.+.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999887754444456777789999998776553 3345655554
No 241
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.91 E-value=0.00015 Score=63.65 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=73.8
Q ss_pred EEEEECCCcchHHHHH-HHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056 222 TVAVLGAGLMGAGIAH-VTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY- 294 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~-~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 294 (359)
||+|||+|+.-.+.-. ..... +-+|.++|+|+++++....-.+... +....+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence 7999999998887543 23332 2389999999999887655444332 221111 146678888
Q ss_pred CCCCCccEEEEcccC------------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 295 DPFKNADMVIEAVFE------------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~------------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
++++++|+||.++-. +..+..++.+.+.+++ |+.-++.-|+..
T Consensus 69 eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~ 147 (183)
T PF02056_consen 69 EALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPM 147 (183)
T ss_dssp HHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSH
T ss_pred HHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChH
Confidence 679999999975521 1114446778899997 577776666543
Q ss_pred cH--HHHHhhcCCCCcEEee
Q psy9056 339 PI--TKIAAASKRPDKVRNM 356 (359)
Q Consensus 339 ~~--~~l~~~~~~~~rvig~ 356 (359)
.+ +.+.... ...+++|+
T Consensus 148 ~~vt~a~~r~~-~~~k~vGl 166 (183)
T PF02056_consen 148 GIVTEALSRYT-PKIKVVGL 166 (183)
T ss_dssp HHHHHHHHHHS-TTSEEEEE
T ss_pred HHHHHHHHHhC-CCCCEEEE
Confidence 32 3333333 33678874
No 242
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=3.1e-05 Score=74.30 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=80.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc----C
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY----D 295 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~----~ 295 (359)
...||+||.|.||..+|..++.+||.|.+|+|+.++.++..+.- ...+ ++....++ .
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~-------~~~k------------~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAER-------AKGK------------NIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhC-------ccCC------------CccccCcHHHHHH
Confidence 35799999999999999999999999999999999988755321 1111 23333333 2
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH--hhc-CCCCcEEeec
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA--AAS-KRPDKVRNMG 357 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~--~~~-~~~~rvig~h 357 (359)
.++..--|++.|-.- ..+..++++|.+++.++.||++..++.-..++. ..+ ...-.|||+.
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~G 127 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMG 127 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecc
Confidence 456666777766443 335788899999999999999877654333322 222 2334566653
No 243
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.89 E-value=0.00031 Score=67.10 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=62.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
-++|+|||+|.||..++..+...| .+|+++|+++++.+.....+.. . ....++. +.+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--------~-------------~~~~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--------N-------------AVPLDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--------e-------------EEeHHHHHHHH
Confidence 378999999999999999998866 6899999999876654332210 0 0000122 446
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhC-CCCcEEEEcCCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVV-PPHCVVATNTSA 337 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~-~~~~ii~s~ts~ 337 (359)
.++|+||.|++.+.. ..++..+.+.. ..+.++++.+..
T Consensus 237 ~~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 237 NEADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred hcCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeCCC
Confidence 789999999986654 33344433222 245677766543
No 244
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.88 E-value=3.5e-05 Score=65.97 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=60.4
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
+++.|+|.|.+|.++|..+...|.+|+++|+||-++-++.. +.+.+.+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~------------------------dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM------------------------DGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH------------------------TT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh------------------------cCcEecCHHHHHhhC
Confidence 68999999999999999999999999999999965433221 223333222568999
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC---CCcHHHHHhh
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS---AIPITKIAAA 346 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts---~~~~~~l~~~ 346 (359)
|++|-++-...-+..+- .+.+++++|+++.++ -+.+..+.+.
T Consensus 80 di~vtaTG~~~vi~~e~----~~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEH----FRQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHH----HHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHH----HHHhcCCeEEeccCcCceeEeecccccc
Confidence 99998875433122233 335788999987654 2445555444
No 245
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.87 E-value=2.7e-05 Score=79.66 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=72.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|||.|.||..+|..+...|.+|+.||+.... +... .. .+... ++ +.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~-------------g~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QL-------------GVELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hc-------------CCEEE-cHHHHHhh
Confidence 78999999999999999999999999999986421 1100 00 11122 33 45799
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~ 348 (359)
||+|+.++|.+.+.+.-+-++..+.++++.+++..+.|-. -..+.+.+.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence 9999999998877544443667778899999887665533 345656554
No 246
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.85 E-value=3.5e-05 Score=72.65 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=66.7
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+..|+-.+++...- + -.=++|+|||.| .||.+||..|.++|++|++|++....++
T Consensus 140 PcTp~aii~lL~~~~i---~-----l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------- 197 (301)
T PRK14194 140 PCTPSGCLRLLEDTCG---D-----LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------- 197 (301)
T ss_pred CCcHHHHHHHHHHhCC---C-----CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH--------------
Confidence 4556777777776642 1 222799999995 9999999999999999999986643111
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
+.+++||+||.|++....+... +++++++|++.+
T Consensus 198 -----------------------e~~~~ADIVIsavg~~~~v~~~-------~ik~GaiVIDvg 231 (301)
T PRK14194 198 -----------------------ALCRQADIVVAAVGRPRLIDAD-------WLKPGAVVIDVG 231 (301)
T ss_pred -----------------------HHHhcCCEEEEecCChhcccHh-------hccCCcEEEEec
Confidence 3468899999999866443322 267899988765
No 247
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.84 E-value=2.9e-05 Score=76.92 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=72.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|||||.|.+|..+|..+...|.+|+.||+.+.... .......++ +.++
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~ 202 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLA 202 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHh
Confidence 37999999999999999999999999999998642100 011122344 4579
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~ 348 (359)
.||+|+.++|-+.+.+.-+=++..+.++++.+++..+-|- ....+.+.+.
T Consensus 203 ~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 203 QSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 9999999999888754444356677789999988666543 3345555554
No 248
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.83 E-value=1.9e-05 Score=77.31 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=68.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|||||.|+||..+|..+...|.+|++||+.....+ + ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence 7899999999999999999999999999997543110 0 001 1233 44689
Q ss_pred ccEEEEcccCCHH---HHHHHH-HHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 300 ADMVIEAVFEDIN---IKHQVI-KEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
||+|+.++|-..+ ....++ ++....+++++++++.+-|-.+ ..+.+.+.
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 9999999996542 122344 4456668999999876655333 45555543
No 249
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.76 E-value=3.3e-05 Score=73.80 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=71.4
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|||||.|.+|..+|..+..-|-+|..||+.....+. .+. ..++ +.++
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~----------------------------~~~-~~~l~ell~ 195 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNE----------------------------EYE-RVSLEELLK 195 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccccc----------------------------Cce-eecHHHHhh
Confidence 378999999999999999999899999999986421000 011 1233 4579
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC--cHHHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI--PITKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~ 348 (359)
.||+|++++|-+.+.+.-+=++.-+.++++.++++.+-|- .-..+.+.+.
T Consensus 196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999999887754444456666789999998766553 3345655554
No 250
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.74 E-value=0.00016 Score=68.67 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=62.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|.|||.|.+|..++..+...|.+|+++|+++++.+.... .+. . -+. ..++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------eec-HHHHHHHhCC
Confidence 79999999999999999999999999999999876443321 010 0 000 0122 45688
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
+|+||.++|... +-++..+.++++.+|++..+
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence 999999998432 22445556778888876554
No 251
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.73 E-value=7e-05 Score=71.96 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=73.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHCC-------CeeEEecCCHH--HHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKG-------YNTIVKDSFEK--GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG 290 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G-------~~V~l~d~~~~--~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 290 (359)
-||+|+|+ |.+|+.++..+...+ .+|+++|+++. .++.....+.+... ....++..
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~~ 68 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAF--------------PLLKSVVA 68 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccc--------------cccCCcee
Confidence 47999999 999999999999855 48999999753 12211111111000 01123344
Q ss_pred ccCc-CCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc-CCCCc
Q psy9056 291 TLSY-DPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS-KRPDK 352 (359)
Q Consensus 291 ~~~~-~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~~r 352 (359)
.+++ +++++||+||.+.-. +..+.+++...|.++++++.+++..++...+ ..+.+.. ..|.+
T Consensus 69 ~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~ 148 (325)
T cd01336 69 TTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKE 148 (325)
T ss_pred cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHH
Confidence 4554 789999999986521 3334567778899988777776666654443 3444443 34433
Q ss_pred EEe
Q psy9056 353 VRN 355 (359)
Q Consensus 353 vig 355 (359)
.+|
T Consensus 149 ~ig 151 (325)
T cd01336 149 NFT 151 (325)
T ss_pred HEE
Confidence 354
No 252
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00023 Score=64.88 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=65.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccC---c-C
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLS---Y-D 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~---~-~ 295 (359)
++|.|||+|.+|.++|..|.+.|++|+++|.++++++....... ... -+.. .++ + +
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~------------~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTH------------VVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceE------------EEEecCCCHHHHHh
Confidence 58999999999999999999999999999999998776332100 000 0000 111 1 2
Q ss_pred -CCCCccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCC
Q psy9056 296 -PFKNADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTS 336 (359)
Q Consensus 296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts 336 (359)
.+.++|+++-++.++. ...++-.+... ++...+|+-..+
T Consensus 62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEecC
Confidence 3799999999998877 55666665533 566667765444
No 253
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=7.7e-05 Score=71.38 Aligned_cols=94 Identities=10% Similarity=0.054 Sum_probs=63.9
Q ss_pred ccEEEEECCCcchHHHHHHHHH--CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVD--KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
-++|+|||+|.||..++..+.. ...+|++|+|++++.+...+.++. .+. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 4789999999999999885554 346899999999988876554321 010 12233444 46
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+.++|+|+.|++... .++.. +.++++++|...++.
T Consensus 187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGNF 221 (314)
T ss_pred HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCCC
Confidence 789999999888663 33321 456788876555443
No 254
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.71 E-value=0.00016 Score=68.04 Aligned_cols=112 Identities=9% Similarity=-0.006 Sum_probs=73.2
Q ss_pred cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccC
Q psy9056 230 LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309 (359)
Q Consensus 230 ~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~ 309 (359)
.||+.+|..|+++|++|++++++ ++++...+.-- .+.. ..+. .....+..+++.+.+...|+||+|++.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl-~i~~--~~~~-------~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGL-RIVS--LGGE-------FQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCc-EEEe--cCCc-------EEEcccccccChhhcCCCCEEEEeccc
Confidence 37999999999999999999997 55554322100 0000 0000 000022334455557789999999986
Q ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHH-HHhhcCCCCcEEe
Q psy9056 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITK-IAAASKRPDKVRN 355 (359)
Q Consensus 310 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~~~~~~rvig 355 (359)
.. ...+++.+.+++.++++|++..+|+...+ +...++ +.++++
T Consensus 70 ~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~ 113 (293)
T TIGR00745 70 YQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILG 113 (293)
T ss_pred hh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEE
Confidence 65 56888999999999999999999987654 555443 345543
No 255
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.70 E-value=0.00055 Score=61.19 Aligned_cols=43 Identities=37% Similarity=0.429 Sum_probs=37.5
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
.+=++|+|+|.|.||..+|..|.+.|++|+++|+++++++...
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 3336899999999999999999999999999999988766543
No 256
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=97.69 E-value=8.3e-05 Score=65.20 Aligned_cols=76 Identities=22% Similarity=0.189 Sum_probs=55.2
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcch--------HhH------HhhhcC--hHHHHHHHhcC--
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG--------TQR------LPKLTA--LPNVLDMTLTG-- 62 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~--------~~~------l~~~~g--~~~a~~~~ltg-- 62 (359)
+.|.++|+.|+++||+++|.++ +.|+.+++-.+ .++ +.. +.+.-| ...+..|+-..
T Consensus 67 g~AaSaG~~ia~a~d~i~m~p~--a~iG~~~~v~~----~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~ 140 (178)
T cd07021 67 DRAASAGALIALAADEIYMAPG--ATIGAAEPIPG----DGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIE 140 (178)
T ss_pred CchHHHHHHHHHhCCeEEECCC--CeEecCeeEcC----CCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcc
Confidence 5688999999999999999988 99999865432 222 111 232333 24455555544
Q ss_pred -----------CCCCHHHHHHcCCcceecCC
Q psy9056 63 -----------KTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 63 -----------~~~~a~eA~~~Glv~~~~~~ 82 (359)
-.++++||++.|++|.++++
T Consensus 141 v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 141 VPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred cccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 27999999999999999987
No 257
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.68 E-value=0.00024 Score=70.59 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=76.3
Q ss_pred cEEEEECCCcchH-HHHHHHHHC-----CCeeEEecCC-HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 221 KTVAVLGAGLMGA-GIAHVTVDK-----GYNTIVKDSF-EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 221 ~kI~IIG~G~mG~-~iA~~l~~~-----G~~V~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
.||+|||+|+.-+ .+...+++. +-+|+++|+| +++++....-.+.... ....+ -.+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~----~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVK----KAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHH----hhCCC--------eEEEEeCC
Confidence 4899999988644 334455542 3489999999 8887764443333222 11100 14666778
Q ss_pred c-CCCCCccEEEEcccC----------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 294 Y-DPFKNADMVIEAVFE----------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 294 ~-~~l~~aD~Vi~avp~----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
. +++.++|+||.++-. +..+..++.+.+.+++ |+.+++..|+..
T Consensus 69 ~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~ 147 (419)
T cd05296 69 RREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPA 147 (419)
T ss_pred HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHH
Confidence 7 689999999976521 1135667778899987 567666555544
Q ss_pred c--HHHHHhhcCCCCcEEee
Q psy9056 339 P--ITKIAAASKRPDKVRNM 356 (359)
Q Consensus 339 ~--~~~l~~~~~~~~rvig~ 356 (359)
. .+.+.... +.|++|+
T Consensus 148 ~ivt~a~~k~~--~~rviGl 165 (419)
T cd05296 148 GIVTEAVLRHT--GDRVIGL 165 (419)
T ss_pred HHHHHHHHHhc--cCCEEee
Confidence 3 33444433 7788885
No 258
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.68 E-value=7.1e-05 Score=71.61 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=70.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|||||.|.+|..+|..+..-|.+|+.||+.... . . . .. ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~--------~----~---------------~~-~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V--------C----R---------------EG-YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c--------c----c---------------cc-cCCHHHHHHh
Confidence 79999999999999999999889999999975321 0 0 0 00 1133 45799
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~ 348 (359)
||+|+.++|-+.+...-+=++..+.++++.++++.+-| +.-..+.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999988775444445666778999999866654 33345655554
No 259
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.68 E-value=5.7e-05 Score=72.38 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=70.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|||||.|.+|..+|..+...|.+|+.||+.... +. .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence 69999999999999999999999999999986321 00 00 0123 45799
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~ 348 (359)
||+|+.++|-+.+.+.-+=++.-+.++++.+++..+-|-- -..+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998887544444566677899999987665533 345655554
No 260
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.67 E-value=3.9e-05 Score=74.93 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=66.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|||||.|+||+.+|..+...|.+|.+||+.... . + .... ..++ +.++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence 79999999999999999999999999999964321 0 0 0000 1234 45689
Q ss_pred ccEEEEcccCCHH---HHHHHH-HHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056 300 ADMVIEAVFEDIN---IKHQVI-KEIEAVVPPHCVVATNTSA--IPITKIAAASK 348 (359)
Q Consensus 300 aD~Vi~avp~~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~ 348 (359)
||+|+..+|-..+ -...++ ++..+.+++++++++.+-| +.-..+.+.+.
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 9999999985442 011333 4556678899999876655 33345555553
No 261
>PRK05086 malate dehydrogenase; Provisional
Probab=97.66 E-value=9.5e-05 Score=70.68 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=72.2
Q ss_pred cEEEEECC-CcchHHHHHHHHH---CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--ccC-
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVD---KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--TLS- 293 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~---~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--~~~- 293 (359)
+||+|||+ |.+|..++..+.. .+++++++|+++.. +.....+.+. . ....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~alDl~~~-------~---------~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGVAVDLSHI-------P---------TAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cceehhhhcC-------C---------CCceEEEeCCCCH
Confidence 58999999 9999999998855 24689999998542 1100111110 0 0001221 345
Q ss_pred cCCCCCccEEEEcccC--------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHH----hhcCC-CCc
Q psy9056 294 YDPFKNADMVIEAVFE--------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIA----AASKR-PDK 352 (359)
Q Consensus 294 ~~~l~~aD~Vi~avp~--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~----~~~~~-~~r 352 (359)
+++++++|+||.|.-. +..+.+++.+.+.++ .++.+|+..|+...+ ..+. ...+. ++|
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~r 142 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNK 142 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHH
Confidence 4788999999998732 233566777888888 456766655555432 2222 44444 478
Q ss_pred EEee
Q psy9056 353 VRNM 356 (359)
Q Consensus 353 vig~ 356 (359)
++|+
T Consensus 143 vig~ 146 (312)
T PRK05086 143 LFGV 146 (312)
T ss_pred EEee
Confidence 8886
No 262
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.66 E-value=8e-05 Score=71.49 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=71.3
Q ss_pred ccEEEEECCCcchHHHHHHHH-HCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTV-DKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
=++|||||.|.+|..+|..+. .-|-+|..||+....-.. . .. .... .++ +.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~--~----------~~-------------~~~~-~~l~ell 198 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE--E----------RF-------------NARY-CDLDTLL 198 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH--H----------hc-------------CcEe-cCHHHHH
Confidence 379999999999999999987 678899999987421000 0 00 1111 234 457
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC--CcHHHHHhhcC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA--IPITKIAAASK 348 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~ 348 (359)
+.||+|+.++|-+.+.+.-+=++..+.++++.+++..+-| +.-+.+.+.+.
T Consensus 199 ~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999999988875544445677778999998766544 33345656554
No 263
>PLN02306 hydroxypyruvate reductase
Probab=97.62 E-value=0.00012 Score=71.99 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=73.3
Q ss_pred ccEEEEECCCcchHHHHHHHH-HCCCeeEEecCCHHH-HHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTV-DKGYNTIVKDSFEKG-LARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
=++|||||.|.+|..+|..+. .-|.+|+.||+.... .+.........+. ..+. . ........++ +.
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~---~~~~-~-------~~~~~~~~~L~el 233 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLK---ANGE-Q-------PVTWKRASSMEEV 233 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccccc---cccc-c-------cccccccCCHHHH
Confidence 379999999999999999985 679999999987642 1110000000000 0000 0 0011122355 45
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASK 348 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~ 348 (359)
++.||+|+.++|-+.+...-+=++..+.++++.+++..+-|-- -..+.+.+.
T Consensus 234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 7999999999998776544444667777899999987665533 345555553
No 264
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.60 E-value=0.00046 Score=62.80 Aligned_cols=98 Identities=10% Similarity=0.137 Sum_probs=66.7
Q ss_pred hHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcCCCCCccEEEEcccCC
Q psy9056 232 GAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYDPFKNADMVIEAVFED 310 (359)
Q Consensus 232 G~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~aD~Vi~avp~~ 310 (359)
|+.||..|+.+||+|++.|.|.+-.++. .+++.... ..+. ++|.++++.+++.+.-+|=-
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedA-------------GV~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDA-------------GVEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhc-------------CcEEecCchhhhhcceEEEEecccc
Confidence 8899999999999999999998765542 12222121 2444 44558899999999999854
Q ss_pred -HHHHHHHHHHHHHhCCCCcEEEEcCCCCcH---HHHHhhcCCC
Q psy9056 311 -INIKHQVIKEIEAVVPPHCVVATNTSAIPI---TKIAAASKRP 350 (359)
Q Consensus 311 -~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~ 350 (359)
.+. .+.+.|.++++.+.+|++.++.-++ ..+...+..+
T Consensus 94 k~T~--~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~k 135 (340)
T COG4007 94 KATF--GIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTK 135 (340)
T ss_pred hhhH--HHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCc
Confidence 433 6778999999999999743332222 2455555544
No 265
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.60 E-value=0.0003 Score=62.88 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=61.2
Q ss_pred EEEEECCCcchHHHHHHHHHC--CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDK--GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF 297 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l 297 (359)
+|+|||+|.+|..+...+... .+ -|.+||++.++...+.... .. ...++++ .+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~~-~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------GR-RCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------CC-CccccHHHHh
Confidence 799999999999998877544 24 4889999999866543211 11 1225564 45
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
++.|+++||.. .+..++...++.+. +-|+||+|...
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SVGA 94 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSVGA 94 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEechh
Confidence 99999999995 44466666665543 45778877654
No 266
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=97.59 E-value=0.00023 Score=65.60 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=62.1
Q ss_pred CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHH
Q psy9056 244 YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIE 322 (359)
Q Consensus 244 ~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~ 322 (359)
++|++++|++++++...+.+ .++..++. +.+.++|+||+|++ +....+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~-----------------------g~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKEL-----------------------GIVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHc-----------------------CcEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 68999999998866543211 12223333 44688999999997 555788899998
Q ss_pred HhCCCCcEEEEcCCCCcHHHHHhhcCCC
Q psy9056 323 AVVPPHCVVATNTSAIPITKIAAASKRP 350 (359)
Q Consensus 323 ~~~~~~~ii~s~ts~~~~~~l~~~~~~~ 350 (359)
.++.++++|+|...+++++++.+.++..
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~ 92 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGT 92 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCC
Confidence 8777788999999999999999988643
No 267
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.59 E-value=0.00036 Score=68.94 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=61.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+.. .|. ......+.+..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 68999999999999999999999999999999988665432 111 000001345678
Q ss_pred cEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcC
Q psy9056 301 DMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNT 335 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~t 335 (359)
|+||+|+.... ++. ...+.++++.+++..+
T Consensus 259 DVVI~atG~~~-----~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNKD-----IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCHH-----HHHHHHHhcCCCCcEEEEeC
Confidence 99999986332 333 3455678888876554
No 268
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.59 E-value=7.5e-05 Score=62.42 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=54.3
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
+-++|.|||+|-+|.+++..+...|.. |++++|+.++++...+.+. ...+ .....++. +.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--------~~~~----------~~~~~~~~~~~ 72 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--------GVNI----------EAIPLEDLEEA 72 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--------GCSE----------EEEEGGGHCHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--------cccc----------ceeeHHHHHHH
Confidence 348999999999999999999999986 9999999998777654331 0000 01112222 34
Q ss_pred CCCccEEEEcccCCHH
Q psy9056 297 FKNADMVIEAVFEDIN 312 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~ 312 (359)
+.++|+||.|+|....
T Consensus 73 ~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 73 LQEADIVINATPSGMP 88 (135)
T ss_dssp HHTESEEEE-SSTTST
T ss_pred HhhCCeEEEecCCCCc
Confidence 6889999999987653
No 269
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.57 E-value=0.00085 Score=66.97 Aligned_cols=122 Identities=17% Similarity=0.209 Sum_probs=76.5
Q ss_pred cEEEEECCCcc-hHHHHHHHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056 221 KTVAVLGAGLM-GAGIAHVTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY 294 (359)
Q Consensus 221 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (359)
+||+|||+|+. +..+...+.+. +-+|+++|+|+++++....-.+ +..+....+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence 48999999874 22334445444 3589999999999887443333 222221111 146678887
Q ss_pred -CCCCCccEEEEcccC----------------------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056 295 -DPFKNADMVIEAVFE----------------------------------DINIKHQVIKEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 295 -~~l~~aD~Vi~avp~----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~ 339 (359)
+++.+||+||.++-. +..+..++.+.|.+++ |+.++++.|+...
T Consensus 69 ~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~ 147 (437)
T cd05298 69 EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAA 147 (437)
T ss_pred HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 789999999965421 1225667888899987 5676666665544
Q ss_pred H--HHHHhhcCCCCcEEee
Q psy9056 340 I--TKIAAASKRPDKVRNM 356 (359)
Q Consensus 340 ~--~~l~~~~~~~~rvig~ 356 (359)
+ ..+... ....|++|+
T Consensus 148 ~vt~~~~~~-~~~~kviGl 165 (437)
T cd05298 148 IVAEALRRL-FPNARILNI 165 (437)
T ss_pred HHHHHHHHH-CCCCCEEEE
Confidence 3 344434 334788884
No 270
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.57 E-value=0.00019 Score=69.08 Aligned_cols=94 Identities=9% Similarity=0.011 Sum_probs=64.7
Q ss_pred ccEEEEECCCcchHHHHHHHHH--CCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVD--KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
.++++|||+|.+|...+..+.. ...+|.+||+++++.+...+.+++ .+ -.+...++. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHH
Confidence 4789999999999997666544 345899999999998776544321 01 013334455 56
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+++||+|+.|+|... .++. .+.+++++.|....+.
T Consensus 190 v~~aDiVitaT~s~~----P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 190 VEGCDILVTTTPSRK----PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred hccCCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence 899999999998755 3332 2346788887666554
No 271
>KOG0069|consensus
Probab=97.56 E-value=0.00023 Score=67.91 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=73.7
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP 296 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 296 (359)
-.-++|+|+|+|.+|..+|..|...| .++.| .|++..-+...+... ...+..+.
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~~------------------------~~~d~~~~ 214 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYYA------------------------EFVDIEEL 214 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhcc------------------------cccCHHHH
Confidence 34579999999999999999999999 55555 555544333222110 12222356
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhc
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAAS 347 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~ 347 (359)
+.++|+|++|.|-+.+...-+-++....++++.+|++..-|--+ ..+.+.+
T Consensus 215 ~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 215 LANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred HhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 89999999999999987777778888899999998876655333 3444443
No 272
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.55 E-value=0.00018 Score=68.91 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=72.1
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=+++||||.|.+|..+|+.+..-|-+|..||+++. -+. ... .+..... + +.++
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~-~~~-----------------------~~~~y~~-l~ell~ 199 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEA-EKE-----------------------LGARYVD-LDELLA 199 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHH-Hhh-----------------------cCceecc-HHHHHH
Confidence 47999999999999999999977889999999974 111 000 0011222 3 5689
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH--HHHHhhcC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI--TKIAAASK 348 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 348 (359)
.||+|++.+|-..+...-+=++..+.++++.+|+..+-|--+ ..+.+.+.
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999988886555556677778998888755544333 34444443
No 273
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.54 E-value=8.7e-05 Score=73.17 Aligned_cols=86 Identities=13% Similarity=0.213 Sum_probs=63.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeE------EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTI------VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY 294 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~------l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (359)
++|+|||.|.+|...|..+.-.|++|+ .+|.+...-+.+. + +.+.+.+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~-------------dGF~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------E-------------NGFKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------h-------------cCCccCCHH
Confidence 799999999999999999999999988 3443333322211 1 112232222
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~ 332 (359)
++++.||+|+..+|+.. ...+++++.++++++..+.
T Consensus 93 Ea~~~ADvVviLlPDt~--q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 93 ELIPQADLVINLTPDKQ--HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred HHHHhCCEEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence 66899999999999884 6688899999999999875
No 274
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.52 E-value=0.00033 Score=69.00 Aligned_cols=97 Identities=24% Similarity=0.160 Sum_probs=65.5
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
-++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ..+.+..+.+..
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-----------~G-------------~~v~~leeal~~ 250 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-----------DG-------------FRVMTMEEAAKI 250 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-----------cC-------------CEeCCHHHHHhc
Confidence 468999999999999999999999999999999876433221 11 111111134678
Q ss_pred ccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcCCC---CcHHHHHh
Q psy9056 300 ADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNTSA---IPITKIAA 345 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~ts~---~~~~~l~~ 345 (359)
+|+||.++.. . .++. +....++++.+|+..+.+ +....+.+
T Consensus 251 aDVVItaTG~-~----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 251 GDIFITATGN-K----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred CCEEEECCCC-H----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 9999998753 2 3333 355677889988765442 44455544
No 275
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00025 Score=66.96 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=67.3
Q ss_pred ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEEC-CCcchHHHHHHHHHCCCeeEEec-CCHHHHHHHHHHHHHhHHH
Q psy9056 192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLG-AGLMGAGIAHVTVDKGYNTIVKD-SFEKGLARGLGQIKTGLDG 269 (359)
Q Consensus 192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~l~d-~~~~~l~~~~~~~~~~l~~ 269 (359)
-|-+..++-.+++.... +..=++|+||| .|.||.+||..|.++|++|++|+ ++++ ++
T Consensus 138 ~PcTp~ai~~ll~~~~i--------~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~------------ 196 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHG--------DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP------------ 196 (296)
T ss_pred cCCCHHHHHHHHHHhCC--------CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH------------
Confidence 35556777777776542 12337999999 89999999999999999999995 5542 10
Q ss_pred HHhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 270 AVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+.++.||+||.|++....+... +++++++|++.+..
T Consensus 197 -------------------------e~~~~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin 232 (296)
T PRK14188 197 -------------------------AVCRRADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN 232 (296)
T ss_pred -------------------------HHHhcCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence 2367899999999865533222 27789998876543
No 276
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=97.49 E-value=0.00019 Score=58.59 Aligned_cols=71 Identities=11% Similarity=-0.040 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHhhccChhhHHHHHHHHhhhhhcChhhHHHHHh-Hhhhh-hhhh
Q psy9056 140 QIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGL-FRAQT-ECKK 210 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~a-f~~k~-~~~~ 210 (359)
....++...+.....+++.+...+.++++++...++++++++|++...+++.++||.|||++ .++|. +|++
T Consensus 28 ~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W 100 (118)
T PF13766_consen 28 DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKW 100 (118)
T ss_dssp HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------
T ss_pred cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCC
Confidence 34456777777778888899999999999999999999999999999999999999999997 55564 4444
No 277
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.46 E-value=0.00046 Score=68.42 Aligned_cols=87 Identities=20% Similarity=0.135 Sum_probs=61.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ..+. +. +.+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~-~l~eal~ 266 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVM-TMEEAAE 266 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEec-CHHHHHh
Confidence 368999999999999999999999999999999876443211 01 1111 11 3467
Q ss_pred CccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEEEcCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVATNTS 336 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~s~ts 336 (359)
.+|+||.++.. . .++. +....++++.++++.+.
T Consensus 267 ~aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 267 LGDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence 89999998843 2 2343 45556788998876553
No 278
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.44 E-value=0.00037 Score=60.86 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=57.2
Q ss_pred EEEEECCCcchHHHHHHHHHCCC-eeEEecCCH---HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccc----cc---
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE---KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASL----VG--- 290 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i----~~--- 290 (359)
+|.|||+|.+|+.++..+++.|. +++++|.+. +.+.+..- .... -|+.........+.++ .+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~~--vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLSQ--IGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHhh--CCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999998 599999886 33221110 0011 1111111111212111 11
Q ss_pred ----cc-Cc-CCCCCccEEEEcccCCHHHHHHHHHHHHHh
Q psy9056 291 ----TL-SY-DPFKNADMVIEAVFEDINIKHQVIKEIEAV 324 (359)
Q Consensus 291 ----~~-~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~ 324 (359)
.. +. +.++++|+||+| .++.+.+..+.+...+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 01 11 346889999999 55777777677776665
No 279
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00026 Score=69.13 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=63.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc--Cc-C
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL--SY-D 295 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~--~~-~ 295 (359)
|++|.|||+|.+|+.+|..++++| .+|++.||+.++++++...... ++... .+...+ .+ +
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---------~v~~~-------~vD~~d~~al~~ 64 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---------KVEAL-------QVDAADVDALVA 64 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---------cceeE-------EecccChHHHHH
Confidence 579999999999999999999999 8999999999988876543211 11000 000010 11 3
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
.+++.|+||.|+|-..+. .+++... ..++-+++.+.
T Consensus 65 li~~~d~VIn~~p~~~~~--~i~ka~i---~~gv~yvDts~ 100 (389)
T COG1748 65 LIKDFDLVINAAPPFVDL--TILKACI---KTGVDYVDTSY 100 (389)
T ss_pred HHhcCCEEEEeCCchhhH--HHHHHHH---HhCCCEEEccc
Confidence 568889999999977754 4444332 33554544444
No 280
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.42 E-value=0.0006 Score=55.68 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=60.3
Q ss_pred EEEEECC-CcchHHHHHHHHHC-CCeeEEe-cCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC-
Q psy9056 222 TVAVLGA-GLMGAGIAHVTVDK-GYNTIVK-DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF- 297 (359)
Q Consensus 222 kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~-d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l- 297 (359)
||+|+|+ |.+|..++..+... +++|..+ +++.+..+.... ..+.+.. .+...-+.+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCccccc--------ccccccccCChh
Confidence 6899995 99999999999885 7777666 544322111111 0000000 00000111222
Q ss_pred -CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 298 -KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 298 -~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
.++|+||.|+|.+... .+...+...+.++++++++++.+..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 5899999999988754 5444555567889999999887653
No 281
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00061 Score=65.53 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=64.6
Q ss_pred ccEEEEECCCcchHHHHHHHHH-CCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVD-KGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
-++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+.++... + -.+...++. +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 4789999999999998877654 343 89999999998877655443210 0 012223444 46
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
+.++|+|+.|+|... .++. +.+++++.|....+
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs 222 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS 222 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence 789999999999764 3343 35688888876654
No 282
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.41 E-value=0.00038 Score=65.67 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=53.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
++|.|||+|..|.+++..++..|. +|+++||+.++.+...+.+.+.... ..+....+. +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~----------------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPA----------------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCC----------------eEEEeccchHhhhC
Confidence 789999999999999999999998 7999999999887765544321100 011111222 3568
Q ss_pred CccEEEEcccCC
Q psy9056 299 NADMVIEAVFED 310 (359)
Q Consensus 299 ~aD~Vi~avp~~ 310 (359)
++|+||.|+|..
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 899999998754
No 283
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.40 E-value=0.00094 Score=53.99 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=61.4
Q ss_pred EEEEECCCcchHHHHHHHHHC--CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-CC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDK--GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-PF 297 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~--G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l 297 (359)
||+|||+|.+|......+.+. +.+| .++|+++++.+...+.. .+...+|++ .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-----------------------GIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-----------------------TSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-----------------------cccchhHHHHHH
Confidence 799999999999999888887 3454 57899998866543211 122344443 33
Q ss_pred --CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHH
Q psy9056 298 --KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA 344 (359)
Q Consensus 298 --~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~ 344 (359)
.+.|+|++++|..... ++.....+.-. -+++--.-....++..
T Consensus 59 ~~~~~D~V~I~tp~~~h~--~~~~~~l~~g~--~v~~EKP~~~~~~~~~ 103 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSSHA--EIAKKALEAGK--HVLVEKPLALTLEEAE 103 (120)
T ss_dssp HHTTESEEEEESSGGGHH--HHHHHHHHTTS--EEEEESSSSSSHHHHH
T ss_pred HhhcCCEEEEecCCcchH--HHHHHHHHcCC--EEEEEcCCcCCHHHHH
Confidence 3799999999987743 55555544311 3554433344444433
No 284
>PRK04148 hypothetical protein; Provisional
Probab=97.39 E-value=0.00062 Score=56.59 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=66.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
++|.+||+| -|..+|..|.+.|++|+.+|.+++.++.+.....+. ..+.+ +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~-----------------v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA-----------------FVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE-----------------EECcC-CCCCHHHHhcC
Confidence 589999999 899999999999999999999999877654321000 00001 12222346899
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
|+|...-|. .++ ..-+.++.+..+-+.+|...+...++
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 999988873 333 34445677777777777655554433
No 285
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.37 E-value=0.00045 Score=69.04 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=62.0
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
=++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ... .++ +.++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~ 308 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVE 308 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHh
Confidence 379999999999999999999999999999999876432211 01 111 122 3478
Q ss_pred CccEEEEcccCCHHHHHHHH-HHHHHhCCCCcEEEEcCCC
Q psy9056 299 NADMVIEAVFEDINIKHQVI-KEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~-~~l~~~~~~~~ii~s~ts~ 337 (359)
.+|+||.++. + +.++ ++..+.++++.+|+..+-+
T Consensus 309 ~ADIVI~atG-t----~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 309 TADIFVTATG-N----KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred cCCEEEECCC-c----ccccCHHHHhccCCCcEEEEcCCC
Confidence 8999999874 2 2344 3455567889988766544
No 286
>KOG2380|consensus
Probab=97.36 E-value=0.0011 Score=62.63 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=69.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C-CCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D-PFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~l~ 298 (359)
.+|+|||.|+||.=+|..+.++|+.|+..||++ -+.+...+.. +. -+++ + +-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~--------~~---------------ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGS--------AK---------------FTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcc--------cc---------------cccHHHHHhc
Confidence 689999999999999999999999999999987 2332222210 11 1112 2 236
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCcHH--HHHhhcCCCCcEEeecC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAV-VPPHCVVATNTSAIPIT--KIAAASKRPDKVRNMGR 358 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~--~l~~~~~~~~rvig~h~ 358 (359)
..|+|+.|+. ..-...+++..-.. .+.++|++..+|....+ .+..-++..-.++-.|.
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHp 168 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHP 168 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecC
Confidence 7899999994 22233444433222 45678887777654433 34444444446666664
No 287
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.34 E-value=0.00054 Score=63.92 Aligned_cols=88 Identities=22% Similarity=0.203 Sum_probs=65.4
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
-++|+|||.|+.|.+-|..+..+|++|++=-+..... +++..+ +.+.+-+-.++++.
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s----------~~kA~~-------------dGf~V~~v~ea~k~ 74 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS----------WKKAKE-------------DGFKVYTVEEAAKR 74 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh----------HHHHHh-------------cCCEeecHHHHhhc
Confidence 3799999999999999999999999977665443321 111111 23443333477899
Q ss_pred ccEEEEcccCCHHHHHHHHH-HHHHhCCCCcEEE
Q psy9056 300 ADMVIEAVFEDINIKHQVIK-EIEAVVPPHCVVA 332 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~-~l~~~~~~~~ii~ 332 (359)
+|+|++.+|+.. ..++++ +|.++++.+..+.
T Consensus 75 ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 75 ADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred CCEEEEeCchhh--HHHHHHHHhhhhhcCCceEE
Confidence 999999999877 458887 7999999998764
No 288
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=97.34 E-value=0.0004 Score=62.74 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEecccc
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEV 32 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~ 32 (359)
|+|.|||+.|+++||++++++. +.|+...+
T Consensus 82 g~a~s~gy~lA~~aD~i~a~~~--a~~g~iG~ 111 (214)
T cd07022 82 GLAASAAYWIASAADRIVVTPT--AGVGSIGV 111 (214)
T ss_pred CchhhHHHHHHhcCCEEEEcCC--CeEEeeeE
Confidence 5789999999999999999988 88765443
No 289
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.34 E-value=0.00089 Score=61.91 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=56.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCC---Ce-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG---YN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP 296 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G---~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 296 (359)
.||+|||+|.||..++..+...+ ++ +.++++++++.+.... .+...++++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 58999999999999999987643 44 4567888765443211 1223445544
Q ss_pred --CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 297 --FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 297 --l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
....|+|+||.. .+..++.-..+... ..|.+++|.+
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL~~-g~dlvv~SvG 95 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCLTA-GLDMIICSAG 95 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHHhc-CCCEEEEChh
Confidence 377999999995 44466666665543 3455665544
No 290
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.33 E-value=0.00038 Score=65.13 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=62.3
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
-+++.|+|+|.+|.+++..++..|++|+++++++++.+...+.++. .+.. .....+.....+
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~-------~~~~-----------~~~~~~~~~~~~ 178 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQR-------YGEI-----------QAFSMDELPLHR 178 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh-------cCce-----------EEechhhhcccC
Confidence 3689999999999999999999999999999999887665443321 0100 000111123467
Q ss_pred ccEEEEcccCCHH--HHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 300 ADMVIEAVFEDIN--IKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 300 aD~Vi~avp~~~~--~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+|+||.|+|.... .....+ ....++++.++++....
T Consensus 179 ~DivInatp~gm~~~~~~~~~--~~~~l~~~~~v~D~~y~ 216 (270)
T TIGR00507 179 VDLIINATSAGMSGNIDEPPV--PAEKLKEGMVVYDMVYN 216 (270)
T ss_pred ccEEEECCCCCCCCCCCCCCC--CHHHcCCCCEEEEeccC
Confidence 9999999986431 100001 12345677777765543
No 291
>PLN02494 adenosylhomocysteinase
Probab=97.32 E-value=0.00054 Score=68.34 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=65.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~ 299 (359)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ..+. +. +.+..
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G-------------~~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EG-------------YQVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cC-------------Ceec-cHHHHHhh
Confidence 78999999999999999999999999999999876433221 01 0011 12 34678
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC---CCcHHHHHhh
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS---AIPITKIAAA 346 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts---~~~~~~l~~~ 346 (359)
+|+||.+..... .+..+..+.++++.+|++.+. -+....+.+.
T Consensus 310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 999998765322 223445557889998886655 2444555544
No 292
>KOG2666|consensus
Probab=97.32 E-value=0.00034 Score=65.44 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=78.4
Q ss_pred ccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHH----HHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQI----KTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
|.||+-||+|++|.+....++.+ ..+|+++|.+..++......- +..++..++. ..-.++.+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 57999999999999887666554 458999999999877654421 2222222211 11236788999
Q ss_pred cC-CCCCccEEEEcccC-------------CHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056 294 YD-PFKNADMVIEAVFE-------------DINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341 (359)
Q Consensus 294 ~~-~l~~aD~Vi~avp~-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 341 (359)
.+ .+.++|+||+++.. ++...++..+.|.++...+.|++ .-|++|+.
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~ 132 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVK 132 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccch
Confidence 84 68999999998843 45566778888999988888875 44555553
No 293
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.31 E-value=0.00073 Score=64.39 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=65.1
Q ss_pred ccEEEEECCCcchHHHHHHHHH-CC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVD-KG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
-++|+|||+|.+|...+..+.. .+ .+|.+|++++++.+...+.++.. +. .+. .++. +.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~-----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GP-----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CC-----------eeE-ECCHHHH
Confidence 3689999999999999999865 45 47999999999888765544310 00 011 2334 46
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+.++|+||.|+|... .++.. .+++++.|....+.
T Consensus 186 v~~aDiVitaT~s~~----Pl~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 186 PEAVDLVVTATTSRT----PVYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hhcCCEEEEccCCCC----ceeCc---cCCCCCEEEecCCC
Confidence 899999999998776 33432 25788877766553
No 294
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=97.30 E-value=0.00018 Score=64.78 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccc------------cCCCCCCCcc---hH--------------hHHhhhcC
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPE------------VMLGLLPGAG---GT--------------QRLPKLTA 51 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe------------~~~Gi~p~~g---~~--------------~~l~~~~g 51 (359)
|+|.|+|+.|+++||+++|+++ ++|+.-- .++|+-+..- +. ..+...+.
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~--a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld 156 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPS--TLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIE 156 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCC--CEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999988 8886333 2233322110 00 00111111
Q ss_pred ----------------hHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 52 ----------------LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 52 ----------------~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
.....+-+..|..+++++|++.||||++-.-
T Consensus 157 ~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~ 203 (211)
T cd07019 157 NGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF 203 (211)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCH
Confidence 0112233456788999999999999998875
No 295
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.26 E-value=0.0009 Score=64.41 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=64.7
Q ss_pred cEEEEECCCcchHHHHHHHHH-CCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVD-KGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
++++|||+|.+|...+..+.. .+. +|++|+|++++.+...+.+...+ + -.+...++. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-----------~~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-----------IDVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 689999999999999998873 564 79999999999887665443111 1 012223444 457
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
.++|+|+.|+|.... ++. .+.+++++.|....+..
T Consensus 193 ~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 193 SGADIIVTTTPSETP----ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred ccCCEEEEecCCCCc----Eec--HHHcCCCcEEEeeCCCC
Confidence 899999999987553 222 12356777666554433
No 296
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.26 E-value=0.00096 Score=60.18 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=30.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF 252 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 252 (359)
.+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 689999999999999999999998 59999988
No 297
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.25 E-value=0.0012 Score=54.24 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=60.2
Q ss_pred cEEEEECC-CcchHHHHHHHHH-CCCe-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVD-KGYN-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~-~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
.||+|+|+ |.||..++..+.+ .|++ |-.+|++++.... +.+. ..... ....+.+.+++ +.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~----------~~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGI----------GPLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTS----------ST-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCc----------CCcccccchhHHHh
Confidence 38999999 9999999999999 6787 4556777621000 0000 00000 01234455666 44
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI 343 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l 343 (359)
+..+|++|+.. .++.....++...++ +.-+++.|+|+.-+++
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI 106 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH
Confidence 67799999988 455455555555544 6777788888876543
No 298
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.00065 Score=63.68 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=65.9
Q ss_pred ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHH
Q psy9056 192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGA 270 (359)
Q Consensus 192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~ 270 (359)
-|-+..++-.+++...- + -.=++|+|||. |.||.++|..|.++|+.|++|.....
T Consensus 138 ~PcTp~avi~lL~~~~i---~-----l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~---------------- 193 (284)
T PRK14179 138 IPCTPAGIMEMFREYNV---E-----LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR---------------- 193 (284)
T ss_pred cCCCHHHHHHHHHHhCC---C-----CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC----------------
Confidence 35566777777765432 1 12279999998 99999999999999999999942211
Q ss_pred HhhccCChHHHHhhhcccccccCc-CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 271 VKRKKMSALDRDRYLASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 271 ~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
++ +.+++||+||.|++....+... ++++++++++.+..
T Consensus 194 ----------------------~l~~~~~~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgin 232 (284)
T PRK14179 194 ----------------------NLAEVARKADILVVAIGRGHFVTKE-------FVKEGAVVIDVGMN 232 (284)
T ss_pred ----------------------CHHHHHhhCCEEEEecCccccCCHH-------HccCCcEEEEecce
Confidence 11 3478899999999855543332 37889998876543
No 299
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.20 E-value=0.00055 Score=61.20 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=48.3
Q ss_pred CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchH----------------------hHHhhhcC--hHH
Q psy9056 1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGT----------------------QRLPKLTA--LPN 54 (359)
Q Consensus 1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~----------------------~~l~~~~g--~~~ 54 (359)
|.|.++|+.|+++++ .|++. |+++++++++++++ ..+....| ...
T Consensus 98 G~aaS~a~~I~~ag~~~~r~~~---------p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~ 168 (200)
T PRK00277 98 GQAASMGAFLLAAGAKGKRFAL---------PNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEK 168 (200)
T ss_pred eEeccHHHHHHhcCCCCCEEEc---------CCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 568889999988743 45555 44455554433221 22333334 245
Q ss_pred HHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 55 VLDMTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 55 a~~~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
..+++-.+..++|+||+++||+|+++.+
T Consensus 169 i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 169 IEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHhhCCccccHHHHHHcCCccEEeec
Confidence 5566667778999999999999999976
No 300
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.20 E-value=0.00074 Score=67.19 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=60.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
++|+|||+|.||..++..+...| .+|++++++.++.+.....+.. .. +.+ .+. +.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~--------~~------------i~~-~~l~~~l~ 239 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG--------EA------------VKF-EDLEEYLA 239 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC--------eE------------eeH-HHHHHHHh
Confidence 79999999999999999999999 6899999999876544322110 00 111 122 4567
Q ss_pred CccEEEEcccCCHHH-HHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 299 NADMVIEAVFEDINI-KHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~-k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
++|+||.|++....+ ..+.++.....-+...++++.+.
T Consensus 240 ~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 240 EADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred hCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 899999999755432 33444443221112346666543
No 301
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.20 E-value=0.001 Score=64.19 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=55.3
Q ss_pred ccEEEEECCCcchHHHHHHHHH-CC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVD-KG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
.++|+|||+|.+|...+..+.. .+ .+|.+|++++++.+...+.+++.+ + -.+...++. +.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-----------~~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-----------IPVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-----------ceEEEeCCHHHH
Confidence 3689999999999998888875 44 589999999999887765443211 1 012334454 55
Q ss_pred CCCccEEEEcccCCHH
Q psy9056 297 FKNADMVIEAVFEDIN 312 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~ 312 (359)
+.++|+|+.|+|....
T Consensus 195 l~~aDiVi~aT~s~~p 210 (330)
T PRK08291 195 VAGADIIVTTTPSEEP 210 (330)
T ss_pred HccCCEEEEeeCCCCc
Confidence 7899999999987653
No 302
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.19 E-value=0.0011 Score=59.67 Aligned_cols=79 Identities=22% Similarity=0.160 Sum_probs=51.6
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEeccccC------------CCCCCC------------c--chH----hHHh---
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEVM------------LGLLPG------------A--GGT----QRLP--- 47 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~~------------~Gi~p~------------~--g~~----~~l~--- 47 (359)
++|.|+|+.|+++||.++|+++ +.|+...+. +|+-+. + ..+ ..+.
T Consensus 70 g~a~s~g~~la~aaD~i~a~p~--a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l 147 (207)
T TIGR00706 70 GVAASGGYYIAMAADEIVANPG--TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLV 147 (207)
T ss_pred CccchHHHHHHhcCCEEEECCC--CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHH
Confidence 4688999999999999999987 877654333 333210 0 000 1111
Q ss_pred --------------hhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 48 --------------KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 48 --------------~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
|-+...... -+..++.+++++|++.||||++...
T Consensus 148 ~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~ 195 (207)
T TIGR00706 148 NESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGTE 195 (207)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCCH
Confidence 111222222 3467889999999999999999876
No 303
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.19 E-value=0.00064 Score=60.22 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=52.6
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc--ccC----
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG--TLS---- 293 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~--~~~---- 293 (359)
+++.|+|+ |.+|..++..+++.|++|++++|+.++++.....++... + ..+.. ..+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~------~-----------~~~~~~~~~~~~~~ 91 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF------G-----------EGVGAVETSDDAAR 91 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc------C-----------CcEEEeeCCCHHHH
Confidence 68999996 999999999999999999999999888776554332110 0 00111 011
Q ss_pred cCCCCCccEEEEcccCCH
Q psy9056 294 YDPFKNADMVIEAVFEDI 311 (359)
Q Consensus 294 ~~~l~~aD~Vi~avp~~~ 311 (359)
.+.+.++|+||-++|...
T Consensus 92 ~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 92 AAAIKGADVVFAAGAAGV 109 (194)
T ss_pred HHHHhcCCEEEECCCCCc
Confidence 134688999999998665
No 304
>KOG3124|consensus
Probab=97.16 E-value=0.00089 Score=61.04 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=77.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC----eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc-cccCcC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY----NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV-GTLSYD 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~ 295 (359)
.+|++||+|+|..+++..+.+.|. ++..+-.+....... ... ..+. +.++.+
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~-------------~g~~~~~~n~~ 57 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA-------------LGVKTVFTNLE 57 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc-------------CCceeeechHH
Confidence 379999999999999999999986 466665532221110 001 1122 233356
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHHHhhcCCCCcEE
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVR 354 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~rvi 354 (359)
.++.+|++++++ ++.+...++.++......+.||+|...|.+++.+...++.+.|++
T Consensus 58 ~~~~s~v~~~sv--Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rvi 114 (267)
T KOG3124|consen 58 VLQASDVVFLSV--KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVI 114 (267)
T ss_pred HHhhccceeEee--cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceE
Confidence 788999999999 555577777777665666779999999999999999998666655
No 305
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.12 E-value=0.00089 Score=62.94 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=63.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
+++.|+|+|.+|.+++..+...| .+|++++|+.++.+...+.+... . .+.+..+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-------~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-------G------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-------c------------ceeecccchhccc
Confidence 68999999999999999999999 69999999998877654433210 0 01111122 4578
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
++|+||.|+|....-......-..+.++++.++++...
T Consensus 185 ~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 185 DFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred cCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence 89999999986542100000001134567777776554
No 306
>PRK06046 alanine dehydrogenase; Validated
Probab=97.12 E-value=0.0012 Score=63.60 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=63.8
Q ss_pred ccEEEEECCCcchHHHHHHHHHC-CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDK-GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 296 (359)
.++|+|||+|.+|...+..+... +. .|.+||+++++.+...+.++..+ + -.+...++.+ .
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence 47999999999999999888754 33 79999999998887665443110 0 0123344553 4
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
++ +|+|+.|+|... .+|. .+.+++++.|.+..+.
T Consensus 192 l~-aDiVv~aTps~~----P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 192 CD-CDILVTTTPSRK----PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred hh-CCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence 55 999999999765 3332 2345788887666554
No 307
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.10 E-value=0.00082 Score=54.96 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=59.3
Q ss_pred EEEEEC-CCcchHHHHHHHHHCCC-e-eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc-CcCCC
Q psy9056 222 TVAVLG-AGLMGAGIAHVTVDKGY-N-TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL-SYDPF 297 (359)
Q Consensus 222 kI~IIG-~G~mG~~iA~~l~~~G~-~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~l 297 (359)
||+||| .|++|..+...|.++-. + +.++.++.+.-+.. ...... ......+.+.+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPL--------SEVFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBH--------HHTTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCee--------ehhccc--------cccccceeEeecchhHh
Confidence 799999 79999999999999532 4 55566655221111 110000 00112233333 33557
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
.++|+||.|+|... ..++...+ +..++.|+++++.+..
T Consensus 65 ~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 65 SDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDFRL 102 (121)
T ss_dssp TTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred hcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHHhC
Confidence 99999999998555 44555555 3467888899887643
No 308
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=97.10 E-value=0.0016 Score=56.69 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=58.0
Q ss_pred CCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCC----c---c-hHh------HHhhhcC--hHHHHHHHhcCCCC
Q psy9056 2 FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPG----A---G-GTQ------RLPKLTA--LPNVLDMTLTGKTL 65 (359)
Q Consensus 2 ~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~----~---g-~~~------~l~~~~g--~~~a~~~~ltg~~~ 65 (359)
.|..+|.-++++||.++|.++ ++++...+-.|..+. . - .+. -+.+.-| ...+..++-....+
T Consensus 71 ~AaSag~~I~~a~~~i~m~p~--s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~l 148 (172)
T cd07015 71 SAASAGTYIALGSHLIAMAPG--TSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSL 148 (172)
T ss_pred eehhHHHHHHHhcCceEECCC--CEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCc
Confidence 577899999999999999988 999988875443220 0 0 011 1222333 35667777788889
Q ss_pred CHHHHHHcCCcceecCC
Q psy9056 66 KADKAKKMGIVDQLVEP 82 (359)
Q Consensus 66 ~a~eA~~~Glv~~~~~~ 82 (359)
+++||+++|++|.++++
T Consensus 149 ta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 149 TPEEALKYGVIEVVARD 165 (172)
T ss_pred CHHHHHHcCCceeeeCC
Confidence 99999999999999987
No 309
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.09 E-value=0.0046 Score=61.37 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=53.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
++|.|||+|-||..++..+...|. +|++++|+.++.+.....++. +. ....+++ +.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~--------~~------------~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN--------AS------------AHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC--------Ce------------EecHHHHHHHhc
Confidence 689999999999999999999996 799999999876665432210 00 0011222 4578
Q ss_pred CccEEEEcccCCHHH
Q psy9056 299 NADMVIEAVFEDINI 313 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~ 313 (359)
++|+||.|++.+.-+
T Consensus 242 ~aDiVI~aT~a~~~v 256 (414)
T PRK13940 242 KADIIIAAVNVLEYI 256 (414)
T ss_pred cCCEEEECcCCCCee
Confidence 899999999765543
No 310
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0038 Score=61.64 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=76.2
Q ss_pred CccEEEEECCCcchHHHHH-HHHHC-----CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc
Q psy9056 219 PVKTVAVLGAGLMGAGIAH-VTVDK-----GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL 292 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~-~l~~~-----G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 292 (359)
+..||+|||+|+.+.+--. .+... +.++.++|.++++++....- .++.++....+ -++..++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~----~~~~v~~~g~~--------~kv~~tt 69 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL----AKKLVEEAGAP--------VKVEATT 69 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH----HHHHHHhhCCC--------eEEEEec
Confidence 3468999999999877543 33332 45899999999998743322 22333322111 2466778
Q ss_pred Cc-CCCCCccEEEEccc--------------C--------------------CHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 293 SY-DPFKNADMVIEAVF--------------E--------------------DINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 293 ~~-~~l~~aD~Vi~avp--------------~--------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
|. ++++++|+|+.++- . +..+.-++.+.+.+++ |++-++.-|+.
T Consensus 70 d~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP 148 (442)
T COG1486 70 DRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNP 148 (442)
T ss_pred CHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccCh
Confidence 87 78999999996541 0 1124446778889988 67766655554
Q ss_pred Cc--HHHHHhhcCCCCcEEee
Q psy9056 338 IP--ITKIAAASKRPDKVRNM 356 (359)
Q Consensus 338 ~~--~~~l~~~~~~~~rvig~ 356 (359)
.. .+.+.+..+ .-++||+
T Consensus 149 ~~~vTeAv~r~~~-~~K~VGl 168 (442)
T COG1486 149 AAIVTEAVRRLYP-KIKIVGL 168 (442)
T ss_pred HHHHHHHHHHhCC-CCcEEee
Confidence 32 333434343 3478774
No 311
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.08 E-value=0.0017 Score=61.79 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=65.5
Q ss_pred ccEEEEECCCcchHHHHHHHHHC-C-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDK-G-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
-++++|||+|..|...+..+..- . -+|.+|++++++.+...+.+++.+ + -.+...++. ++
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 47999999999999988877764 2 279999999999887765544211 1 023444555 66
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
+.+||+|+-|++... .++. .+.+++++.|....+
T Consensus 180 v~~aDIV~taT~s~~----P~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 180 LRDADTITSITNSDT----PIFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred HhcCCEEEEecCCCC----cEec--HHHcCCCceEEecCC
Confidence 899999999998765 3332 234567776655544
No 312
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0022 Score=61.48 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=69.2
Q ss_pred CccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
+.+.++|||+|.++......+..- .-+|.+|+++++..++....+.+.. ...+...++. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-----------------~~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-----------------GEAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-----------------CccceeccCHHH
Confidence 568999999999999988877654 3489999999999888765443211 0123445555 6
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
++++||+|+-|+|.+..+ ++ .+++++++.|....+..
T Consensus 192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGad~ 228 (330)
T COG2423 192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGADA 228 (330)
T ss_pred HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCCCC
Confidence 789999999999987733 32 34567888887666543
No 313
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.05 E-value=0.0015 Score=66.04 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=53.0
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
-+++.|+|+|.+|.+++..+.+.|++|+++++++++.+.....+.. . .....+...+.+
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~--------~-------------~~~~~~~~~l~~ 390 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG--------K-------------AFPLESLPELHR 390 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--------c-------------eechhHhcccCC
Confidence 3689999999999999999999999999999998876654332110 0 000112233678
Q ss_pred ccEEEEcccCCHH
Q psy9056 300 ADMVIEAVFEDIN 312 (359)
Q Consensus 300 aD~Vi~avp~~~~ 312 (359)
+|+||.|+|....
T Consensus 391 ~DiVInatP~g~~ 403 (477)
T PRK09310 391 IDIIINCLPPSVT 403 (477)
T ss_pred CCEEEEcCCCCCc
Confidence 9999999998764
No 314
>PLN00203 glutamyl-tRNA reductase
Probab=97.01 E-value=0.0045 Score=63.11 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=63.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
-++|+|||+|.||..++..+...|. +|++++++.++.+.....+. +. . -.....++. +.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~-~--------i~~~~~~dl~~al 327 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV-E--------IIYKPLDEMLACA 327 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC-c--------eEeecHhhHHHHH
Confidence 4789999999999999999999997 79999999988766543221 00 0 001111222 457
Q ss_pred CCccEEEEcccCCH-HHHHHHHHHHHHhC---CCCcEEEEcCC
Q psy9056 298 KNADMVIEAVFEDI-NIKHQVIKEIEAVV---PPHCVVATNTS 336 (359)
Q Consensus 298 ~~aD~Vi~avp~~~-~~k~~v~~~l~~~~---~~~~ii~s~ts 336 (359)
.++|+||.|++... -+.++.++.+.+.- ....++++.+-
T Consensus 328 ~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 328 AEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred hcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 89999999986533 34455666554321 11246666543
No 315
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.00 E-value=0.001 Score=66.37 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=61.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
++|+|||+|.||..++..+...|. +|+++++++++.+.....+.. .. +.. .+. +.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~--------~~------------~~~-~~~~~~l~ 241 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG--------EA------------IPL-DELPEALA 241 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--------cE------------eeH-HHHHHHhc
Confidence 789999999999999999999997 899999999876654332110 00 001 112 4567
Q ss_pred CccEEEEcccCCHH-HHHHHHHHHHHhC-CCCcEEEEcCC
Q psy9056 299 NADMVIEAVFEDIN-IKHQVIKEIEAVV-PPHCVVATNTS 336 (359)
Q Consensus 299 ~aD~Vi~avp~~~~-~k~~v~~~l~~~~-~~~~ii~s~ts 336 (359)
++|+||.|++.+.. +..+.++.....- ..+.++++.+.
T Consensus 242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 89999999976543 2334444432211 23456666543
No 316
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.97 E-value=0.0027 Score=55.10 Aligned_cols=74 Identities=30% Similarity=0.296 Sum_probs=54.6
Q ss_pred ccEEEEECCCcc-hHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCC
Q psy9056 220 VKTVAVLGAGLM-GAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFK 298 (359)
Q Consensus 220 ~~kI~IIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 298 (359)
-++|.|||+|.| |..++..|.+.|.+|++.+++.+.+. +.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~ 86 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTK 86 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHh
Confidence 389999999986 88899999999999999998753211 2478
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
++|+||-|++...-+..+ .+.++.+|++.+..
T Consensus 87 ~aDiVIsat~~~~ii~~~-------~~~~~~viIDla~p 118 (168)
T cd01080 87 QADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGIN 118 (168)
T ss_pred hCCEEEEcCCCCceecHH-------HccCCeEEEEccCC
Confidence 899999999764322222 24556777766554
No 317
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.96 E-value=0.0028 Score=62.04 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=61.2
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
.-.+|.|||+|.+|...+..+...|.+|+++|+++++++.+...+.... ... ..-..++ +.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v----~~~-------------~~~~~~l~~~l 228 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRI----HTR-------------YSNAYEIEDAV 228 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCcee----Eec-------------cCCHHHHHHHH
Confidence 3477999999999999999999999999999999987665432211000 000 0000111 346
Q ss_pred CCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEc
Q psy9056 298 KNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATN 334 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~ 334 (359)
.++|+||.+++.... ...-+-++..+.++++.+|++.
T Consensus 229 ~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 229 KRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 789999999842110 0001223444456788877653
No 318
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.95 E-value=0.0032 Score=60.31 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=66.5
Q ss_pred CccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
..++++|||+|.++...+..+... --+|++|++++++.+...+.+++ .+ -.+...++. +
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~ 188 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAE 188 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHH
Confidence 347999999999999998877654 23899999999998876543321 01 023334555 6
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
++++||+|+-|++... .+|+ .+.+++++.|....+.
T Consensus 189 av~~ADIV~taT~s~~----P~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 189 VAHAANLIVTTTPSRE----PLLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred HhcCCCEEEEecCCCC----ceeC--HHHcCCCcEEEecCCC
Confidence 6899999999998665 3342 2356788877666553
No 319
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.89 E-value=0.0028 Score=58.90 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=57.6
Q ss_pred cEEEEECC-CcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CC
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DP 296 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 296 (359)
.||+|+|+ |.||..++..+.+. +++|+ ++|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 58999998 99999999888764 67754 478887643221 00 012234455 33
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI 343 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l 343 (359)
+.++|+||+++|.+.. .++.....+ .+.-++..+++...+++
T Consensus 58 l~~~DvVid~t~p~~~--~~~~~~al~---~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 58 LADADVLIDFTTPEAT--LENLEFALE---HGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ccCCCEEEECCCHHHH--HHHHHHHHH---cCCCEEEECCCCCHHHH
Confidence 5689999999965542 344443333 34433344667666544
No 320
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.83 E-value=0.019 Score=57.54 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=61.7
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DP 296 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 296 (359)
..++|.|+|+|.+|..++..|.+.|++|+++|.+++..+.......+. ..-.|. ..-...+ ..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd------------~~~~~~L~~~~ 294 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGD------------GTDQELLEEEG 294 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECC------------CCCHHHHHhcC
Confidence 458999999999999999999999999999999999876644321000 000000 0000111 24
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT 333 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s 333 (359)
+.++|.||.+++++. .......+.+.++...+|+-
T Consensus 295 ~~~a~~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 295 IDEADAFIALTNDDE--ANILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred CccCCEEEECCCCcH--HHHHHHHHHHHhCCCeEEEE
Confidence 689999999888764 22333333344455555543
No 321
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.78 E-value=0.0035 Score=58.50 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=46.4
Q ss_pred ccEEEEECCCcchHHHHHHHHHC-CCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPF 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 297 (359)
|.||+|||+|.||..++..+.+. +.++.. ++++.. .+..... .. ..+...+|++.+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l 58 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDAL 58 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHh
Confidence 35999999999999999998876 455433 333221 1111100 00 013345555444
Q ss_pred -CCccEEEEcccCCHHHHHHHHHHHH
Q psy9056 298 -KNADMVIEAVFEDINIKHQVIKEIE 322 (359)
Q Consensus 298 -~~aD~Vi~avp~~~~~k~~v~~~l~ 322 (359)
.+.|+|++|+|... ..++.....
T Consensus 59 ~~~~DvVve~t~~~~--~~e~~~~aL 82 (265)
T PRK13303 59 PQRPDLVVECAGHAA--LKEHVVPIL 82 (265)
T ss_pred ccCCCEEEECCCHHH--HHHHHHHHH
Confidence 56899999998654 234444443
No 322
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.78 E-value=0.008 Score=60.18 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=59.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C-CCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D-PFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~l~ 298 (359)
++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+..... .. .-.|. ..-...+ + .+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~--~~--~~~gd------------~~~~~~l~~~~~~ 64 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD--VR--TVVGN------------GSSPDVLREAGAE 64 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC--EE--EEEeC------------CCCHHHHHHcCCC
Confidence 37999999999999999999999999999999998765432110 00 00010 0000111 2 378
Q ss_pred CccEEEEcccCCHHHHHHHHHHH-HHhCCCCcEEE
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEI-EAVVPPHCVVA 332 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l-~~~~~~~~ii~ 332 (359)
++|.||.+++++. ....+... ....+...+|+
T Consensus 65 ~a~~vi~~~~~~~--~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 65 DADLLIAVTDSDE--TNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred cCCEEEEecCChH--HHHHHHHHHHHhcCCCeEEE
Confidence 8999999998754 23333333 33335555555
No 323
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.74 E-value=0.0032 Score=54.64 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=56.5
Q ss_pred EEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCCCc
Q psy9056 223 VAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFKNA 300 (359)
Q Consensus 223 I~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~a 300 (359)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++. .. .++.-.. .+.-.+++ +++.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~--------~~~~~~~----------d~~d~~~~~~al~~~ 61 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SP--------GVEIIQG----------DLFDPDSVKAALKGA 61 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CT--------TEEEEES----------CTTCHHHHHHHHTTS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-cc--------cccccee----------eehhhhhhhhhhhhc
Confidence 689997 999999999999999999999999987554 00 0000000 00000111 346799
Q ss_pred cEEEEcccC---CHHHHHHHHHHHHHhCCCCcEEE
Q psy9056 301 DMVIEAVFE---DINIKHQVIKEIEAVVPPHCVVA 332 (359)
Q Consensus 301 D~Vi~avp~---~~~~k~~v~~~l~~~~~~~~ii~ 332 (359)
|.||.+++. +....+.+++.+.+. +...+|.
T Consensus 62 d~vi~~~~~~~~~~~~~~~~~~a~~~~-~~~~~v~ 95 (183)
T PF13460_consen 62 DAVIHAAGPPPKDVDAAKNIIEAAKKA-GVKRVVY 95 (183)
T ss_dssp SEEEECCHSTTTHHHHHHHHHHHHHHT-TSSEEEE
T ss_pred chhhhhhhhhccccccccccccccccc-cccccee
Confidence 999999973 333444555555554 3334443
No 324
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.73 E-value=0.0054 Score=59.42 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=63.0
Q ss_pred CccEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
.-++++|||+|..+...+..+..- -.+|++|++++++.+...+.++. .+ -.+...++. +
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~ 189 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAE 189 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHH
Confidence 347899999999998887655543 24899999999998877655432 01 023344555 5
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
++++||+|+-|++.... ..+|+ .+.+++++.|....+
T Consensus 190 av~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs 226 (346)
T PRK07589 190 AVEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGG 226 (346)
T ss_pred HHhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCC
Confidence 68999999999975430 01222 134567776655444
No 325
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.66 E-value=0.0051 Score=57.84 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=65.4
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+-.++-.++++..- .-.=++|.|||.|. +|.++|..|.+.|..|++++.....++
T Consensus 139 PcTp~ai~~ll~~~~i--------~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------- 196 (286)
T PRK14175 139 PCTPLGIMEILKHADI--------DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------- 196 (286)
T ss_pred CCcHHHHHHHHHHcCC--------CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH--------------
Confidence 4556666666665431 12237999999987 999999999999999999986532111
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+.+.+||+||.+++...- +.. ++++++++|++....
T Consensus 197 -----------------------~~~~~ADIVIsAvg~p~~-----i~~--~~vk~gavVIDvGi~ 232 (286)
T PRK14175 197 -----------------------SYLKDADVIVSAVGKPGL-----VTK--DVVKEGAVIIDVGNT 232 (286)
T ss_pred -----------------------HHHhhCCEEEECCCCCcc-----cCH--HHcCCCcEEEEcCCC
Confidence 237899999999975432 221 246788988876653
No 326
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=96.66 E-value=0.0036 Score=56.21 Aligned_cols=80 Identities=23% Similarity=0.143 Sum_probs=51.3
Q ss_pred CCCCchHHHHHHhcCEEEEecCCceEEecccc------------CCCCCCCcch------------------HhHHhhhc
Q psy9056 1 MFAEPSLATVALACHYRIVVKDKKTGLGLPEV------------MLGLLPGAGG------------------TQRLPKLT 50 (359)
Q Consensus 1 ~~a~GgG~~lalacD~ria~~~~~~~~~~pe~------------~~Gi~p~~g~------------------~~~l~~~~ 50 (359)
|+|.|+|..|+++||++++++. +.|+..-+ ++|+-+..-. ...+...+
T Consensus 75 g~~~s~g~~lA~aaD~i~a~~~--s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l 152 (208)
T cd07023 75 DVAASGGYYIAAAADKIVANPT--TITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALV 152 (208)
T ss_pred CcchhHHHHHHhhCCEEEECCC--CeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHH
Confidence 5788999999999999999987 88764322 2343332211 01111111
Q ss_pred Ch----------------HHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 51 AL----------------PNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 51 g~----------------~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
.. ....+-+..|..+++++|++.||||++...
T Consensus 153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~ 200 (208)
T cd07023 153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGL 200 (208)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCH
Confidence 10 011233567888999999999999999865
No 327
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.66 E-value=0.0053 Score=57.85 Aligned_cols=75 Identities=19% Similarity=0.114 Sum_probs=52.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~ 298 (359)
+++.|||+|-+|.+++..++..|. +|++++|++++.+...+.+... ..+. .+....+. +.+.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~-------~~~~---------~~~~~~~~~~~~~ 189 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV-------GVIT---------RLEGDSGGLAIEK 189 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc-------Ccce---------eccchhhhhhccc
Confidence 689999999999999999999997 7999999998877655433210 0000 01000122 3457
Q ss_pred CccEEEEcccCCH
Q psy9056 299 NADMVIEAVFEDI 311 (359)
Q Consensus 299 ~aD~Vi~avp~~~ 311 (359)
++|+||-|+|...
T Consensus 190 ~~DiVInaTp~g~ 202 (282)
T TIGR01809 190 AAEVLVSTVPADV 202 (282)
T ss_pred CCCEEEECCCCCC
Confidence 8999999998754
No 328
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.66 E-value=0.0041 Score=55.85 Aligned_cols=79 Identities=24% Similarity=0.210 Sum_probs=56.2
Q ss_pred CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcch------------------HhHHhhhcCh--HHHHHH
Q psy9056 1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGG------------------TQRLPKLTAL--PNVLDM 58 (359)
Q Consensus 1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~------------------~~~l~~~~g~--~~a~~~ 58 (359)
|.|.+.|..|+++|| .|++.++ ++|.+-....+- +..|- ...+....|. ....++
T Consensus 102 G~aaSaa~lI~~ag~~~~R~~~p~--s~imiH~p~~~~-~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 178 (207)
T PRK12553 102 GQAASAGAVLLAAGTPGKRFALPN--ARILIHQPSLGG-GIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD 178 (207)
T ss_pred eehhhHHHHHHHcCCcCcEEECCC--chhhhcCccccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 467889999999999 5999988 888887765320 11111 1223333342 455566
Q ss_pred HhcCCCCCHHHHHHcCCcceecCC
Q psy9056 59 TLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 59 ~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
+-.+..++|+||+++||||+++++
T Consensus 179 ~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 179 TDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhcCccccHHHHHHcCCccEEcCc
Confidence 777889999999999999999987
No 329
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.58 E-value=0.018 Score=56.79 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=61.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l~ 298 (359)
++|.|||+|-||.-.|..|..+| .+|++.+|+.++.++....+. + ....-++ .+.+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---------~------------~~~~l~el~~~l~ 237 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---------A------------EAVALEELLEALA 237 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---------C------------eeecHHHHHHhhh
Confidence 68999999999999999999999 589999999999887655332 0 0111112 25689
Q ss_pred CccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 299 NADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 299 ~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
++|+||.|+..+.. +.+..+....+. +.+-++++..
T Consensus 238 ~~DvVissTsa~~~ii~~~~ve~a~~~-r~~~livDia 274 (414)
T COG0373 238 EADVVISSTSAPHPIITREMVERALKI-RKRLLIVDIA 274 (414)
T ss_pred hCCEEEEecCCCccccCHHHHHHHHhc-ccCeEEEEec
Confidence 99999999754332 333444443322 2223555543
No 330
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.57 E-value=0.012 Score=60.77 Aligned_cols=96 Identities=8% Similarity=0.079 Sum_probs=61.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~ 298 (359)
..|-|+|+|.+|..++..+.+.|++|+++|.|+++.+.+.+.-. ..-.|..++ .+.+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~-----~~i~GD~~~------------~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGI-----RAVLGNAAN------------EEIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC-----eEEEcCCCC------------HHHHHhcCcc
Confidence 67999999999999999999999999999999998776543100 000010000 0011 2468
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN 334 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ 334 (359)
++|.++.+++++.+.. .+...+....++-.|++-.
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIARA 515 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence 9999999998876532 2333344444433455433
No 331
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.57 E-value=0.025 Score=45.36 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=58.8
Q ss_pred EEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCCCc
Q psy9056 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFKNA 300 (359)
Q Consensus 223 I~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~~a 300 (359)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+....-. .-.|..+. ...+ ..++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~-----~i~gd~~~------------~~~l~~a~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVE-----VIYGDATD------------PEVLERAGIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSE-----EEES-TTS------------HHHHHHTTGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccc-----cccccchh------------hhHHhhcCcccc
Confidence 5799999999999999999777999999999987765432100 00010000 0001 247899
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
+.||.+++++.. -..+...+....+.-.+++-..
T Consensus 64 ~~vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 64 DAVVILTDDDEE-NLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SEEEEESSSHHH-HHHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEccCCHHH-HHHHHHHHHHHCCCCeEEEEEC
Confidence 999999986653 2233344555544445655433
No 332
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.56 E-value=0.012 Score=61.39 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=64.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPFK 298 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~ 298 (359)
++|-|+|.|.+|..++..+.+.|++++++|.|+++++...+.-.. .-.|..++ .+.+ ..++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~-----v~~GDat~------------~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK-----VYYGDATQ------------LELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe-----EEEeeCCC------------HHHHHhcCCc
Confidence 579999999999999999999999999999999987765431000 00010000 0011 2478
Q ss_pred CccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 299 NADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 299 ~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
++|.+|.+++++.+- ..+...+.++.++-.|++-..+
T Consensus 464 ~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 464 KAEAIVITCNEPEDT-MKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEEeCC
Confidence 999999999876543 2344445555555456654444
No 333
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.54 E-value=0.011 Score=55.38 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=54.3
Q ss_pred cEEEEECCCcchHHHHHHHHHC--CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc---
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDK--GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY--- 294 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~--- 294 (359)
++|++||+|.+-.+.-....+. |..|..+|++++..+.+.+-++..+ . .. .++++ +.|.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~-~-L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL-G-LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----H-H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-c-cc-------------CCeEEEecchhcc
Confidence 6999999999988776666554 4578999999998777655333110 0 11 12332 1222
Q ss_pred -CCCCCccEEEEcccC--CHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056 295 -DPFKNADMVIEAVFE--DINIKHQVIKEIEAVVPPHCVVAT 333 (359)
Q Consensus 295 -~~l~~aD~Vi~avp~--~~~~k~~v~~~l~~~~~~~~ii~s 333 (359)
.++.+.|+|+++.-. +.+-|..++..|.++++++++|+.
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 246889999998743 344588999999999999998764
No 334
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.54 E-value=0.013 Score=44.82 Aligned_cols=33 Identities=45% Similarity=0.660 Sum_probs=29.6
Q ss_pred CccEEEEECCCcchHHHHHHHHHC-CCeeEEecC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDK-GYNTIVKDS 251 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~-G~~V~l~d~ 251 (359)
.-++++|+|+|.+|..++..+.+. +.+|.+||+
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 347899999999999999999998 578999987
No 335
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=96.48 E-value=0.007 Score=52.21 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=48.0
Q ss_pred CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcC--hHHHHHHHhc
Q psy9056 1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTA--LPNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g--~~~a~~~~lt 61 (359)
|.|.++|.-|+++|| .|++.++ ++|.+....-|..-...-. ..+.+..| .....+++-.
T Consensus 67 g~aaS~~~~i~~a~~~g~r~~~p~--a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~ 144 (162)
T cd07013 67 GLAASMGSVIAMAGAKGKRFILPN--AMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER 144 (162)
T ss_pred eehhhHHHHHHHcCCCCcEEEecC--EEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence 467889999999999 5777766 7776544322211000000 01222223 3445566667
Q ss_pred CCCCCHHHHHHcCCccee
Q psy9056 62 GKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~ 79 (359)
+..|+++||+++||||++
T Consensus 145 ~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 145 DTWLSAREAVEYGFADTI 162 (162)
T ss_pred CccccHHHHHHcCCCCcC
Confidence 778899999999999975
No 336
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.47 E-value=0.011 Score=57.10 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=31.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 689999999999999999999998 899999885
No 337
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.46 E-value=0.0057 Score=62.08 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=38.2
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
=.+|.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 379999999999999999999999999999999999887654
No 338
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.45 E-value=0.0081 Score=53.73 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 689999999999999999999997 899999883
No 339
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.41 E-value=0.0095 Score=57.16 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=50.0
Q ss_pred CCccEEEEECCCcch-HHHHHHHHHCCC---eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC
Q psy9056 218 TPVKTVAVLGAGLMG-AGIAHVTVDKGY---NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS 293 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG-~~iA~~l~~~G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 293 (359)
+++.||+|||+|.++ ...+..+.+.+. -|.++|+++++++...+.+.. -...+|
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~----------------------~~~~~~ 58 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI----------------------AKAYTD 58 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC----------------------CcccCC
Confidence 356799999999555 457777777663 477789999987765432210 023445
Q ss_pred cC-CCC--CccEEEEcccCCHHH
Q psy9056 294 YD-PFK--NADMVIEAVFEDINI 313 (359)
Q Consensus 294 ~~-~l~--~aD~Vi~avp~~~~~ 313 (359)
++ .++ +.|+|++|+|.+...
T Consensus 59 ~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 59 LEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHHHhcCCCCCEEEEcCCChhhH
Confidence 53 343 479999999988764
No 340
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.41 E-value=0.0032 Score=60.20 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=56.6
Q ss_pred cEEEEECCCcchHHHHHHHHHC-CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-CCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDK-GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-DPF 297 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 297 (359)
++++|||+|..+..-+..+... +. +|.+|++++++.++..+.++. + + -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence 6899999999999988876653 33 899999999998887665543 1 1 124445565 578
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
++||+|+-|+|..... .++. .+.+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPA--PVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEE--ESB---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCC--cccc--HHHcCCCcEEEEecCC
Confidence 9999999999866510 1222 2357789988776654
No 341
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.40 E-value=0.0066 Score=52.93 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=35.1
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLAR 258 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~ 258 (359)
+||+|||+ |..|+.|+....+.||+|+.+-||+.++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999997 999999999999999999999999988654
No 342
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.40 E-value=0.0086 Score=60.72 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=64.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhH-HHHH-hhc----c----CChHHHHhhhccccc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGL-DGAV-KRK----K----MSALDRDRYLASLVG 290 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l-~~~~-~~~----~----~~~~~~~~~~~~i~~ 290 (359)
.++.|+|+|.+|...+..+...|..|+++|+++++++.+.. +.... .-.. +.+ . ++....+.....+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~-- 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF-- 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHHH--
Confidence 79999999999999999999999999999999998776543 11100 0000 000 0 0000000000000
Q ss_pred ccCcCCCCCccEEEEcc--cCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 291 TLSYDPFKNADMVIEAV--FEDINIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 291 ~~~~~~l~~aD~Vi~av--p~~~~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
.+.++++|+||.++ |.... -+-+.++..+.++++.+|++.+
T Consensus 242 ---~e~~~~~DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 242 ---AAQAKEVDIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred ---HHHhCCCCEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEee
Confidence 13468899999988 22111 0124456667788899887544
No 343
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.38 E-value=0.0067 Score=57.98 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=45.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCH-HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-C
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFE-KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-D 295 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 295 (359)
.-||+|||+|+||..++..+.++ +.+++ ++|+++ +.+.. .. ....+.+. +
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-----------~~---------------~v~~~~d~~e 56 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-----------ET---------------PVYAVADDEK 56 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-----------cC---------------CccccCCHHH
Confidence 35999999999999999988776 67866 579985 32110 00 01112233 3
Q ss_pred CCCCccEEEEcccCCHH
Q psy9056 296 PFKNADMVIEAVFEDIN 312 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~ 312 (359)
.+.+.|+|++|+|....
T Consensus 57 ~l~~iDVViIctPs~th 73 (324)
T TIGR01921 57 HLDDVDVLILCMGSATD 73 (324)
T ss_pred hccCCCEEEEcCCCccC
Confidence 46789999999997664
No 344
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=96.34 E-value=0.0047 Score=60.72 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=35.1
Q ss_pred cEEEEECCCcchHHH-HHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGAGLMGAGI-AHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~G~mG~~i-A~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
+||.++|+|++|++. ...+.+.|++|+++|++++.++.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~ 42 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNK 42 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhc
Confidence 379999999999966 78888999999999999887776544
No 345
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.33 E-value=0.012 Score=52.44 Aligned_cols=81 Identities=23% Similarity=0.174 Sum_probs=52.8
Q ss_pred CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcch---------------HhHHhhhcC--hHHHHHHHhc
Q psy9056 1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGG---------------TQRLPKLTA--LPNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~---------------~~~l~~~~g--~~~a~~~~lt 61 (359)
|.|...|..|+++||. |++.++ ++|-+-...-|+.-...- ...+....| .....+++-.
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~--s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~ 167 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPN--ARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDR 167 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCC--CcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhc
Confidence 5688899999999985 888887 777666554332111110 011222222 2344455555
Q ss_pred CCCCCHHHHHHcCCcceecCCC
Q psy9056 62 GKTLKADKAKKMGIVDQLVEPL 83 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~~~~~ 83 (359)
...++++||+++||+|+++++.
T Consensus 168 d~~lta~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 168 DFWLDSSSAVKYGLVFEVVETR 189 (197)
T ss_pred CcccCHHHHHHcCCccEeecCc
Confidence 6779999999999999999873
No 346
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.28 E-value=0.0075 Score=45.28 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=32.6
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHH
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGL 256 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l 256 (359)
||.|||+|.+|.-+|..+.+.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999988655
No 347
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.26 E-value=0.029 Score=56.06 Aligned_cols=122 Identities=12% Similarity=0.006 Sum_probs=80.3
Q ss_pred cEEEEECC-CcchHHHHHHHHHC---CC----eeEEecC--CHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDK---GY----NTIVKDS--FEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG 290 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~---G~----~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 290 (359)
-+|.|-|+ |.+|-++...++.- |. .++|+|+ +.+.++.....+++..... +..+.+
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence 48999996 99999999999874 32 5888999 6777776665555433211 112333
Q ss_pred -ccCcCCCCCccEEEEccc--------------CCHHHHHHHHHHHHHhCCC-CcEEEEcCCCCc--HHHHHhhc-CC-C
Q psy9056 291 -TLSYDPFKNADMVIEAVF--------------EDINIKHQVIKEIEAVVPP-HCVVATNTSAIP--ITKIAAAS-KR-P 350 (359)
Q Consensus 291 -~~~~~~l~~aD~Vi~avp--------------~~~~~k~~v~~~l~~~~~~-~~ii~s~ts~~~--~~~l~~~~-~~-~ 350 (359)
+++++++++||+||++.- .+..+.+.+.+.|.++.++ ..|++..|+... ...+.... +. +
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~ 269 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPR 269 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCH
Confidence 455688999999998662 1344666777888888773 445555555443 33444555 44 4
Q ss_pred CcEEee
Q psy9056 351 DKVRNM 356 (359)
Q Consensus 351 ~rvig~ 356 (359)
+||+|+
T Consensus 270 ~rVig~ 275 (452)
T cd05295 270 KNIIAV 275 (452)
T ss_pred HHEEEe
Confidence 789886
No 348
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.24 E-value=0.025 Score=61.94 Aligned_cols=84 Identities=18% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCCccEEEEECCCcchHHHHHHHHHCC-Ce-------------eEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHH
Q psy9056 217 QTPVKTVAVLGAGLMGAGIAHVTVDKG-YN-------------TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRD 282 (359)
Q Consensus 217 ~~~~~kI~IIG~G~mG~~iA~~l~~~G-~~-------------V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 282 (359)
..++++|+|||+|.||...+..+++.. ++ |.+.|++.+.++...+.+. + ..
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---------~-~~----- 630 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---------N-AE----- 630 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC---------C-Cc-----
Confidence 356889999999999999999998763 33 9999999987665433210 0 00
Q ss_pred hhhccccc-ccCc----CCCCCccEEEEcccCCHHHHHHHHHHH
Q psy9056 283 RYLASLVG-TLSY----DPFKNADMVIEAVFEDINIKHQVIKEI 321 (359)
Q Consensus 283 ~~~~~i~~-~~~~----~~l~~aD~Vi~avp~~~~~k~~v~~~l 321 (359)
-+.. .+|. +.++++|+||.|+|..... .+.+..
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~--~VAkaA 668 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCHA--VVAKAC 668 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCchhhH--HHHHHH
Confidence 0111 1222 2347799999999986643 444443
No 349
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.23 E-value=0.017 Score=54.40 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=64.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
++|.|+|+|-.+.+++..|++.|. +|++++|+.++.+++.+.+...-. .. ......+.+...+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~------~~----------~~~~~~~~~~~~~ 190 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA------AV----------EAAALADLEGLEE 190 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc------cc----------ccccccccccccc
Confidence 789999999999999999999995 899999999998876654442110 00 0001112223336
Q ss_pred ccEEEEcccCCHHHHH-H-HHHHHHHhCCCCcEEEEcCC
Q psy9056 300 ADMVIEAVFEDINIKH-Q-VIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~-~-v~~~l~~~~~~~~ii~s~ts 336 (359)
+|+||.|+|-...... . .+. ...++++.++.+.-.
T Consensus 191 ~dliINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~vY 227 (283)
T COG0169 191 ADLLINATPVGMAGPEGDSPVP--AELLPKGAIVYDVVY 227 (283)
T ss_pred cCEEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEecc
Confidence 8999999986554321 1 122 445667777765443
No 350
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.01 Score=55.78 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=65.1
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCcc-hHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLM-GAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+..++-.++++..-. -.=++|.|||.|.+ |.+++..|.+.|..|++++.....++
T Consensus 139 PcTp~aii~lL~~~~i~--------l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~-------------- 196 (285)
T PRK14189 139 PCTPYGVMKMLESIGIP--------LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLA-------------- 196 (285)
T ss_pred CCCHHHHHHHHHHcCCC--------CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHH--------------
Confidence 44566777777665421 12279999998776 99999999999999999764321111
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+.++++|+||.+++..- ++.. +++++++++++....
T Consensus 197 -----------------------~~~~~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVGin 232 (285)
T PRK14189 197 -----------------------AHTRQADIVVAAVGKRN-----VLTA--DMVKPGATVIDVGMN 232 (285)
T ss_pred -----------------------HHhhhCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcccc
Confidence 34789999999998332 3332 568899998876543
No 351
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.20 E-value=0.019 Score=49.31 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=29.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF 252 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~ 252 (359)
++|.|||+|.+|...+..|...|++|++++.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 78999999999999999999999999999643
No 352
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.16 E-value=0.054 Score=56.74 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=62.7
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--CCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY--DPF 297 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l 297 (359)
-++|-|+|.|.+|..++..+.+.|++++++|.|+++++...+.-. ..-.|..++ .+.+ ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~-----~v~~GDat~------------~~~L~~agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGM-----KVFYGDATR------------MDLLESAGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCC-----eEEEEeCCC------------HHHHHhcCC
Confidence 368999999999999999999999999999999998887643100 000010000 0001 247
Q ss_pred CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN 334 (359)
Q Consensus 298 ~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ 334 (359)
+++|.+|.+++++..- ..+.....++.++-.|++-.
T Consensus 463 ~~A~~vvv~~~d~~~n-~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 463 AKAEVLINAIDDPQTS-LQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CcCCEEEEEeCCHHHH-HHHHHHHHHhCCCCeEEEEE
Confidence 8999999999765532 23334455554444455533
No 353
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.16 E-value=0.013 Score=57.57 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=55.1
Q ss_pred CccEEEEECCCcchHHHHHHHHHC--CC-eeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc-
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDK--GY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY- 294 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 294 (359)
..++++|||+|.++......+... +. +|.+|++++++.+...+.+...+. +. ..+...++.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~ 218 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIE 218 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHH
Confidence 347999999999999999888763 23 899999999998877655442110 00 013445555
Q ss_pred CCCCCccEEEEcccC
Q psy9056 295 DPFKNADMVIEAVFE 309 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~ 309 (359)
+++++||+|+-|++.
T Consensus 219 eav~~ADIVvtaT~s 233 (379)
T PRK06199 219 EVVRGSDIVTYCNSG 233 (379)
T ss_pred HHHcCCCEEEEccCC
Confidence 568999999999964
No 354
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.15 E-value=0.018 Score=53.80 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=55.4
Q ss_pred cEEEEEC-CCcchHHHHHHHHHC-CCee-EEecCC-HHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056 221 KTVAVLG-AGLMGAGIAHVTVDK-GYNT-IVKDSF-EKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP 296 (359)
Q Consensus 221 ~kI~IIG-~G~mG~~iA~~l~~~-G~~V-~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 296 (359)
.||+|+| +|.||..++..+.+. ++++ .++|+. ++.... ... ... +. . ...+.++++++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~---~~~----~~~--~~-~-------~~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGT---DAG----ELA--GI-G-------KVGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCC---CHH----Hhc--Cc-C-------cCCceeeCCHHH
Confidence 5899999 599999999999864 6765 446743 322110 000 000 00 0 012344556644
Q ss_pred C-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHHHH
Q psy9056 297 F-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKI 343 (359)
Q Consensus 297 l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~l 343 (359)
+ ..+|+||+++|... ......... ..++-+++.+++++.++.
T Consensus 65 l~~~~DvVIdfT~p~~--~~~~~~~al---~~g~~vVigttg~~~e~~ 107 (266)
T TIGR00036 65 VETDPDVLIDFTTPEG--VLNHLKFAL---EHGVRLVVGTTGFSEEDK 107 (266)
T ss_pred hcCCCCEEEECCChHH--HHHHHHHHH---HCCCCEEEECCCCCHHHH
Confidence 3 45899999996443 334444333 344534444457765443
No 355
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.12 E-value=0.016 Score=56.10 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=57.7
Q ss_pred ccEEEEECC-CcchHHHHHHHHHC-CCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDK-GYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD- 295 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 295 (359)
|.||+|||+ |.+|..++..+.++ +++++. .++ .+.-+...... .. . ... .... .++++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~----~~-~--~~~---------~~~~-~~~~~~ 63 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVH----PH-L--RGL---------VDLV-LEPLDP 63 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhC----cc-c--ccc---------cCce-eecCCH
Confidence 469999997 99999999999887 567655 453 22111111100 00 0 000 0001 11121
Q ss_pred -CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 296 -PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
...++|+|+.|+|.... .++...+.+ .++.|+++++....
T Consensus 64 ~~~~~vD~Vf~alP~~~~--~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 64 EILAGADVVFLALPHGVS--MDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred HHhcCCCEEEECCCcHHH--HHHHHHHHh---CCCEEEECCcccCC
Confidence 34679999999998663 355555433 57888899987655
No 356
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=96.10 E-value=0.014 Score=52.20 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcch----------------HhHHhhhcCh--HHHHHHHh
Q psy9056 1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGG----------------TQRLPKLTAL--PNVLDMTL 60 (359)
Q Consensus 1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~----------------~~~l~~~~g~--~~a~~~~l 60 (359)
|.|.+.|..|++++| .|++.++ ++|-+-....|+.-+... ...+....|. ....+++-
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~--s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPH--ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCC--CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 467788999999998 6999988 888888776553221110 1222223332 34445555
Q ss_pred cCCCCCHHHHHHcCCcceecCC
Q psy9056 61 TGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 61 tg~~~~a~eA~~~Glv~~~~~~ 82 (359)
....++|+||+++||+|+++.+
T Consensus 175 r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 175 RDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred cCccCCHHHHHHcCCCcEEeec
Confidence 6667999999999999999976
No 357
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.07 E-value=0.029 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=30.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
++|.|||+|.+|...+..|.+.|.+|++++++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 799999999999999999999999999998653
No 358
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.07 E-value=0.0058 Score=60.39 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=32.1
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
|.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4699999999999999999999999999999875
No 359
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.06 E-value=0.016 Score=47.09 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=53.1
Q ss_pred cEEEEEC----CCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056 221 KTVAVLG----AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP 296 (359)
Q Consensus 221 ~kI~IIG----~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 296 (359)
|+|+||| -+.+|..+...+.++|++|+.++...+.+ ..+.+..++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5899999 58899999999999999999998765321 12334444433
Q ss_pred C-CCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEE
Q psy9056 297 F-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332 (359)
Q Consensus 297 l-~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~ 332 (359)
. ...|++++++|.+. ..++++++.+. +-..+++
T Consensus 52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~-g~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPDK--VPEIVDEAAAL-GVKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S-HHH--HHHHHHHHHHH-T-SEEEE
T ss_pred CCCCCCEEEEEcCHHH--HHHHHHHHHHc-CCCEEEE
Confidence 3 78999999997444 66888888776 3445544
No 360
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=96.06 E-value=0.02 Score=50.73 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcCh--HHHHHHHhc
Q psy9056 1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTAL--PNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g~--~~a~~~~lt 61 (359)
|.|...|..|++++| .|++.++ ++|.+-+..-|......-. ..+....|. ....+++-.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~--s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPN--SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCC--ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 457777888888655 6999988 8888877654332111111 113333332 455566667
Q ss_pred CCCCCHHHHHHcCCcceecC
Q psy9056 62 GKTLKADKAKKMGIVDQLVE 81 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~~~ 81 (359)
+..++++||+++||+|+++.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 78899999999999999875
No 361
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.05 E-value=0.011 Score=58.02 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=32.7
Q ss_pred EEEECCCcchHHHHHHHHHCCC--eeEEecCCHHHHHHHHH
Q psy9056 223 VAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLG 261 (359)
Q Consensus 223 I~IIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~l~~~~~ 261 (359)
|.|+|+|.+|..++..|++.+. +|++.|++.++++....
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~ 41 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE 41 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh
Confidence 7899999999999999999974 89999999998777543
No 362
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.04 E-value=0.0087 Score=56.25 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=73.3
Q ss_pred HhhhhhhhhcCC--CCCCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChH
Q psy9056 202 FRAQTECKKNRL--GKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279 (359)
Q Consensus 202 f~~k~~~~~~~~--~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (359)
|++|.+-.++-+ +.|--.-.+|.|||.|.+|+--|+....-|-+|++.|+|.+++...-..+.
T Consensus 148 ~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~--------------- 212 (371)
T COG0686 148 YLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG--------------- 212 (371)
T ss_pred HHHhccCCceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---------------
Confidence 566655333211 233223368999999999999999999999999999999998765432221
Q ss_pred HHHhhhcccc----cccCc-CCCCCccEEEEcc--cCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056 280 DRDRYLASLV----GTLSY-DPFKNADMVIEAV--FEDINIKHQVIKEIEAVVPPHCVVATN 334 (359)
Q Consensus 280 ~~~~~~~~i~----~~~~~-~~l~~aD~Vi~av--p~~~~~k~~v~~~l~~~~~~~~ii~s~ 334 (359)
.++. ....+ +.+..+|+||-++ |...+ =+-+.+++.+.++++.+|++.
T Consensus 213 ------~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 213 ------GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ------ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEEEE
Confidence 1211 11122 5689999999776 32111 224567778888999988763
No 363
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.02 E-value=0.026 Score=54.59 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=31.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.+|.|||+|.+|+.+|..|+..|. +|+++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 689999999999999999999999 899999874
No 364
>KOG2653|consensus
Probab=95.99 E-value=0.019 Score=54.87 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=69.5
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC---
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD--- 295 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 295 (359)
+...|+.||.+.||-.++..++.+|+.|..|+|...+.++....-. +.. .+....+.+
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea-------k~~------------~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA-------KGT------------KIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh-------cCC------------cccCCCCHHHHH
Confidence 4468999999999999999999999999999999999887654221 111 122222322
Q ss_pred -CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 296 -PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
.++..-.|+..+-.-. .+...+++|.+++.++.||++..+
T Consensus 66 ~klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGN 106 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGN 106 (487)
T ss_pred HhcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCc
Confidence 3455666666553222 256778999999999999987554
No 365
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.97 E-value=0.021 Score=52.05 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=30.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC---eeEEecCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY---NTIVKDSF 252 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~---~V~l~d~~ 252 (359)
++|.|+|+|.+|.+++..+...|. +|+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 589999999999999999999997 59999999
No 366
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.071 Score=53.40 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=32.1
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
-++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3789999999999999999999999999999985
No 367
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.92 E-value=0.025 Score=54.79 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=56.2
Q ss_pred ccEEEEECCCcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhh-cccccccCcC-
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYL-ASLVGTLSYD- 295 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~~~- 295 (359)
|.||+|+|+|.||..++..+..+ +.+|+ +.|.+++..+....+.. ++.+ +.. +....... ..+.+..+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G--~~~~---~~~-~~~~~~~~~~~i~V~~~~~e 74 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKG--YPLY---VAD-PEREKAFEEAGIPVAGTIED 74 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcC--CCcc---ccC-ccccccccCCceEEcCChhH
Confidence 35899999999999999988765 45654 44666544333222110 1000 000 00000000 1244444443
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
.+.++|+||+|+|..... ....... ..++.++++++
T Consensus 75 l~~~vDVVIdaT~~~~~~--e~a~~~~---~aGk~VI~~~~ 110 (341)
T PRK04207 75 LLEKADIVVDATPGGVGA--KNKELYE---KAGVKAIFQGG 110 (341)
T ss_pred hhccCCEEEECCCchhhH--HHHHHHH---HCCCEEEEcCC
Confidence 457899999999866532 4444333 33465555554
No 368
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=95.92 E-value=0.042 Score=50.89 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=58.2
Q ss_pred CCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 3 AEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 3 a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
+-|||.-....||+++|.++ +.|++- .|.+....++...--...+.++ ..+++.++++.|+||+++|+
T Consensus 147 ~~gGgA~a~~~~D~v~m~~~--a~~~v~------~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 147 GGSGGALALAVADQVWMLEN--TMYAVL------SPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPE 214 (256)
T ss_pred cCcHHHHHhhcCCEEEEecC--ceEEEc------CHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCC
Confidence 44677777789999999988 666542 2333333333322111222333 37799999999999999986
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056 83 LGPGLNHPEERTMEYLEEVAVNTASQLASGKL 114 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 114 (359)
. +..++...+.+.+...+...++...++
T Consensus 215 ~----~~~~~~~~~~~~~~~~~~l~~l~~~~~ 242 (256)
T PRK12319 215 H----GYFSSEIIDMIKKNLIEELAQLSQKPL 242 (256)
T ss_pred C----CCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 2 133333445555555555555555554
No 369
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.89 E-value=0.02 Score=53.94 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=60.6
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|.+-.|+-..+++... +-.=++|.|||.|. .|.+++..|.+.|..|+++++....+.
T Consensus 140 p~T~~gii~~L~~~~i--------~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------- 197 (283)
T PRK14192 140 SATPAGIMRLLKAYNI--------ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------- 197 (283)
T ss_pred CCcHHHHHHHHHHcCC--------CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH--------------
Confidence 4444666666654321 12226899999987 999999999999999999997432211
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
+.+.++|+||.|++... .+. .+.++++.++++..
T Consensus 198 -----------------------~~~~~aDIvI~AtG~~~-----~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 198 -----------------------ELVKQADIIVGAVGKPE-----LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred -----------------------HHhccCCEEEEccCCCC-----cCC--HHHcCCCCEEEEEE
Confidence 22578999999995222 122 23467888887543
No 370
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.79 E-value=0.016 Score=54.68 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=37.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHHHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQI 263 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~~~ 263 (359)
+++.|+|+|-.+.+++..++..|. +|+++||+.++.+...+.+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~ 171 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI 171 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 689999999999999999999997 7999999999877765443
No 371
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=95.79 E-value=0.055 Score=51.52 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=61.9
Q ss_pred CCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 3 AEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 3 a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
+-|||.-....||+++|.++ +.|+.- .|.++.+.+|.. ..++.+ +-..-++++++.+++|+||+++|.
T Consensus 203 ggsGGAlal~~aD~V~m~e~--a~~sVi------sPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 203 GGSGGALGIGIGDSIMMLEY--AVYTVA------TPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred ccHHHHHhhhcCCeEEEeCC--eEEEec------CHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence 34556555556999999988 777653 355555554443 233333 223568999999999999999986
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056 83 LGPGLNHPEERTMEYLEEVAVNTASQLASGKL 114 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 114 (359)
...+-.+.++.....+.....+...++...++
T Consensus 271 p~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~ 302 (322)
T CHL00198 271 PIGGAQADPASASKILKKKLIRQLDFLKILSP 302 (322)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 32222334444445555555555556665554
No 372
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=95.77 E-value=0.03 Score=50.67 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=53.7
Q ss_pred CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcCh--HHHHHHHhc
Q psy9056 1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTAL--PNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g~--~~a~~~~lt 61 (359)
|.|.+.|..|++++|. |++.++ ++|-+-...-|......-. ..+....|. ....+++-.
T Consensus 121 G~AAS~AslIl~aG~~gkR~~~pn--a~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~r 198 (221)
T PRK14514 121 GMAASMASVLLVAGTKGKRSALPH--SRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDR 198 (221)
T ss_pred EEehhHHHHHHhcCCCCceeeCCC--CEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 5678889999999996 888877 8877777654432111100 012222332 344455566
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy9056 62 GKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~~~~ 82 (359)
...++|+||+++||+|++++.
T Consensus 199 d~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 199 DYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred CccCCHHHHHHcCCccEEeec
Confidence 677999999999999999874
No 373
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.75 E-value=0.11 Score=52.70 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
..-++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3446899999999999999999999999999997653
No 374
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=95.74 E-value=0.0089 Score=52.01 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=54.0
Q ss_pred CCCCchHHHHHHhcC--EEEEecCCceEEeccccCCCCCCCcc---------------hHhHHhhhcCh--HHHHHHHhc
Q psy9056 1 MFAEPSLATVALACH--YRIVVKDKKTGLGLPEVMLGLLPGAG---------------GTQRLPKLTAL--PNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD--~ria~~~~~~~~~~pe~~~Gi~p~~g---------------~~~~l~~~~g~--~~a~~~~lt 61 (359)
|.|.++|.-+++++| .|++.++ +.|.+-+...+..-... ....+....|. ....+++-.
T Consensus 76 g~aaS~~~~i~~~g~~~~r~~~~~--a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~ 153 (171)
T cd07017 76 GLAASMGALLLAAGTKGKRYALPN--SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDR 153 (171)
T ss_pred eEehhHHHHHHHcCCCCCEEEccc--hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Confidence 457888999999999 8999988 99988887665433210 01112222232 344566667
Q ss_pred CCCCCHHHHHHcCCccee
Q psy9056 62 GKTLKADKAKKMGIVDQL 79 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~ 79 (359)
+..++++||+++||+|++
T Consensus 154 ~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 154 DRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CccccHHHHHHcCCCccC
Confidence 788999999999999975
No 375
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.73 E-value=0.017 Score=54.54 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=33.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCe-eEEecCCH---HHHHHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSFE---KGLARG 259 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~l~d~~~---~~l~~~ 259 (359)
+++.|+|+|-.|.+++..++..|.. |++++|++ +++++.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l 169 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQT 169 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHH
Confidence 6899999999999999999999986 99999997 444443
No 376
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.076 Score=48.60 Aligned_cols=40 Identities=30% Similarity=0.272 Sum_probs=35.6
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
++|.|.|+ |.+|..++..|+++|++|++.+++++..+...
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA 52 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 78999997 99999999999999999999999987666543
No 377
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.71 E-value=0.064 Score=51.25 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=51.9
Q ss_pred cEEEEECCCcchHHHHHHHHH-CCCeeEE-ecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC--
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVD-KGYNTIV-KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP-- 296 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~l-~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 296 (359)
-|||+||+|.||+.|+..... .|.+|.. -|++.+...++.+....--....+....+.-......+.+.+|+|.+.
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 499999999999999876654 5887654 488888777665532110000111111111111122345667777754
Q ss_pred -CCCccEEEEccc
Q psy9056 297 -FKNADMVIEAVF 308 (359)
Q Consensus 297 -l~~aD~Vi~avp 308 (359)
....|+||+++-
T Consensus 98 ~~~~IdvIIdATG 110 (438)
T COG4091 98 ANDLIDVIIDATG 110 (438)
T ss_pred cCCcceEEEEcCC
Confidence 355789999884
No 378
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.68 E-value=0.017 Score=56.84 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=60.0
Q ss_pred CccEEEEECC-CcchHHHHHHHHHC-CCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCc--
Q psy9056 219 PVKTVAVLGA-GLMGAGIAHVTVDK-GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSY-- 294 (359)
Q Consensus 219 ~~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 294 (359)
..+||+|+|+ |+.|..+...|.++ +++|..+..+...-+.... .... ...+ ......+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~----~~~~-l~~~------------~~~~~~~~~~ 99 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS----VFPH-LITQ------------DLPNLVAVKD 99 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh----hCcc-ccCc------------cccceecCCH
Confidence 3459999998 99999999999998 6799988765432111110 0000 0000 01001112
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
+.++++|+||.|+|... -..+...+ ..++.|+++++....
T Consensus 100 ~~~~~~DvVf~Alp~~~--s~~i~~~~----~~g~~VIDlSs~fRl 139 (381)
T PLN02968 100 ADFSDVDAVFCCLPHGT--TQEIIKAL----PKDLKIVDLSADFRL 139 (381)
T ss_pred HHhcCCCEEEEcCCHHH--HHHHHHHH----hCCCEEEEcCchhcc
Confidence 23578999999998654 33555554 346888888875443
No 379
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=95.64 E-value=0.029 Score=50.87 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=24.5
Q ss_pred CCchHHHHHHhcCEEEEecCCceEEecccc
Q psy9056 3 AEPSLATVALACHYRIVVKDKKTGLGLPEV 32 (359)
Q Consensus 3 a~GgG~~lalacD~ria~~~~~~~~~~pe~ 32 (359)
|.+||..|+++||.++|.+. +.|+..-+
T Consensus 88 ~~sggy~lasaad~I~a~p~--~~vg~iGv 115 (222)
T cd07018 88 YSQGQYYLASAADEIYLNPS--GSVELTGL 115 (222)
T ss_pred CCchhhhhhhhCCEEEECCC--ceEEeecc
Confidence 67899999999999999987 98888544
No 380
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.63 E-value=0.047 Score=45.72 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=29.6
Q ss_pred EEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999774
No 381
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=95.60 E-value=0.077 Score=52.04 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=59.0
Q ss_pred chHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCCCC
Q psy9056 5 PSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLG 84 (359)
Q Consensus 5 GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~~~ 84 (359)
+||......||+++|.++ +.+++- .|.++.+.+|....-...+.+ .-.+++.+++++|+||+++|...
T Consensus 272 SGGAlalg~aD~VlMle~--A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~Ep~ 339 (431)
T PLN03230 272 SGGALAIGCGNRMLMMEN--AVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPEPL 339 (431)
T ss_pred cHHHHHhhcCCEEEEecC--CEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccCCC
Confidence 344444446899999988 665542 355555555543322233333 34899999999999999998632
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056 85 PGLNHPEERTMEYLEEVAVNTASQLASGKL 114 (359)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 114 (359)
.+-.+.++.....+.....+...+|...++
T Consensus 340 ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~ 369 (431)
T PLN03230 340 GGAHSDPLQASKNIKEVILRHMKELMKMDP 369 (431)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 222233444445555555555566665554
No 382
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.59 E-value=0.032 Score=49.99 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=31.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
++|.|||+|.+|..-+..|.+.|.+|++++.+..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 6999999999999999999999999999987653
No 383
>PRK07236 hypothetical protein; Provisional
Probab=95.53 E-value=0.015 Score=56.99 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 216 PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 216 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
++|...+|.|||+|..|.++|..|+++|++|+++|+++.
T Consensus 2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346678999999999999999999999999999998864
No 384
>PLN00135 malate dehydrogenase
Probab=95.50 E-value=0.072 Score=50.84 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCeeEEecCCH--HHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-cCCCCCccEEEEcccC----------
Q psy9056 243 GYNTIVKDSFE--KGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-YDPFKNADMVIEAVFE---------- 309 (359)
Q Consensus 243 G~~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~l~~aD~Vi~avp~---------- 309 (359)
...++|+|+++ +.++.....+.+..... ...+..+++ ++++++||+||++.-.
T Consensus 13 ~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~--------------~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~d 78 (309)
T PLN00135 13 PVILHMLDIPPAAEALNGVKMELIDAAFPL--------------LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKD 78 (309)
T ss_pred eEEEEEecCcccccchhhHHHHHHhhhHHh--------------cCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHH
Confidence 35789999998 87766555555433211 113444455 7999999999987622
Q ss_pred ----CHHHHHHHHHHHHHhCCCCcEEEEcCCCCc--HHHHHhhcCC-CCcEEee
Q psy9056 310 ----DINIKHQVIKEIEAVVPPHCVVATNTSAIP--ITKIAAASKR-PDKVRNM 356 (359)
Q Consensus 310 ----~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~rvig~ 356 (359)
+..+.+++.++|.+++.++.+++..++... ...+.+.++. +.|+||+
T Consensus 79 ll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~ 132 (309)
T PLN00135 79 VMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITC 132 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEe
Confidence 445677788889997667787766665544 3456666664 4688874
No 385
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.48 E-value=0.043 Score=51.45 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=35.7
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL 260 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~ 260 (359)
+++.|+|+|-.+.+++..+.+.|. +|++++|++++.+...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 489999999999999999999997 6999999998776644
No 386
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=95.43 E-value=0.048 Score=48.68 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=54.3
Q ss_pred CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchHh-----------------HHhhhcCh--HHHHHHH
Q psy9056 1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGTQ-----------------RLPKLTAL--PNVLDMT 59 (359)
Q Consensus 1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~~-----------------~l~~~~g~--~~a~~~~ 59 (359)
|.|.+.|+.|++++|- |++.++ +++-+-....|+. + -... .+.+..|. ....+++
T Consensus 94 G~AaS~As~il~aG~kgkR~~~pn--a~iMIHqp~~~~~-G-~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~ 169 (201)
T PRK14513 94 GIAMSMGSVLLMAGDKGKRMALPN--SRIMIHQGSAGFR-G-NTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM 169 (201)
T ss_pred eeehhhHHHHHhcCCCCcEEecCC--eEEEEecCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 5678889999999995 999988 8888888765541 1 1111 11223332 3344555
Q ss_pred hcCCCCCHHHHHHcCCcceecCC
Q psy9056 60 LTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 60 ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
-....++|+||+++||+|+++++
T Consensus 170 ~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 170 ERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred ccCcccCHHHHHHcCCCcEEecc
Confidence 55667999999999999999975
No 387
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.41 E-value=0.034 Score=53.94 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred cEEEEECC-CcchHHHHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-cCcC-
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-LSYD- 295 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~- 295 (359)
.||+|+|+ |++|..+...+.++ +++++ +++.+...-+.... .. +.+.. . ..+.+. .+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~----~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE----VH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH----hC------ccccc-----c-CCceeecCCHHH
Confidence 38999998 99999999999977 56777 55655422111110 00 00000 0 001111 1222
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcHH
Q psy9056 296 PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341 (359)
Q Consensus 296 ~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 341 (359)
.+.++|+||.|+|.... .++...+.+ .++.|+++++.....
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~~~---~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPELLA---AGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHHHh---CCCEEEeCChhhhcC
Confidence 23589999999997763 355555443 578888888865543
No 388
>PRK06153 hypothetical protein; Provisional
Probab=95.38 E-value=0.029 Score=54.71 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=30.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF 252 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 252 (359)
.+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 89999877
No 389
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.34 E-value=0.22 Score=46.32 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHH
Q psy9056 217 QTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK 264 (359)
Q Consensus 217 ~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~ 264 (359)
++..+++.|-|+ +-+|..+|..|+++|++|+++.|+.+++++..+.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~ 51 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELE 51 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH
Confidence 356788999997 999999999999999999999999999998877665
No 390
>PRK05868 hypothetical protein; Validated
Probab=95.30 E-value=0.016 Score=56.70 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=33.5
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 255 (359)
|++|.|||+|..|.+.|..|+++|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 679999999999999999999999999999988754
No 391
>KOG1683|consensus
Probab=95.26 E-value=0.027 Score=54.06 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=108.0
Q ss_pred HHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC-CCC
Q psy9056 7 LATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP-LGP 85 (359)
Q Consensus 7 G~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~-~~~ 85 (359)
.|.++-+|+||+...-+....+..+...++.-+..-...+...+|...+-.-+--+.-++..||++.|+++++.|. .
T Consensus 165 ~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~-- 242 (380)
T KOG1683|consen 165 PVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIE-- 242 (380)
T ss_pred cEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhH--
Confidence 3788999999999954325558889999966665666666667787777777778899999999999999999983 2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHhcCcccccc-CCCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCCcHHHHH
Q psy9056 86 GLNHPEERTMEYLEEVAVNTASQLASGKLKINR-TKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKIL 164 (359)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
+++.+.............+-... +|..- ..+ +.
T Consensus 243 ----------eel~~~~~~g~kT~kg~y~y~~~l~k~~~------------------~~~------------------~~ 276 (380)
T KOG1683|consen 243 ----------EELLEKGRAGIKTGKGIYPYARGLTKKMK------------------RDE------------------ME 276 (380)
T ss_pred ----------HHHHHHHhhhhhccCcccccccccccCCC------------------hhh------------------HH
Confidence 77777777766666555443222 22211 011 11
Q ss_pred HHHHHhh-ccChhhHHHHHHHHhhhhhcChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc
Q psy9056 165 DVVRTGI-EKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL 230 (359)
Q Consensus 165 ~~~~~~~-~~~~~~~~~~e~~~~~~~~~s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~ 230 (359)
+.+++-. ....+.. ..+-+...+.+|-..|+++.+.|.-..+. .++.-..|.|.|-
T Consensus 277 ~~~r~l~~~~~~r~~---~~ed~v~~~~~p~VnEal~~l~EGi~~~~-------~~~Di~~v~G~gf 333 (380)
T KOG1683|consen 277 ALLRRLSLTPNPRVA---DDEDFVEFLLSPFVNEALRCLLEGLKASP-------SDGDIASVFGLGF 333 (380)
T ss_pred HHHHHhccCCCcccC---CHHHHHHHHhhHHHHHHHHHHHHHHhcCc-------cccceeeeeccCC
Confidence 1122211 0111111 23344566889999999999999887555 4445566777653
No 392
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.26 E-value=0.081 Score=50.17 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=52.8
Q ss_pred cEEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCcC--
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSYD-- 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-- 295 (359)
-||+|||+|.+|..+...+.+. +.++ .++|++++....... .+.| +.. .++++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~G-------------i~~~~~~ie~L 62 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLG-------------VATSAEGIDGL 62 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcC-------------CCcccCCHHHH
Confidence 5899999999999988777764 4565 467888764211110 0111 111 12221
Q ss_pred ----CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 296 ----PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 296 ----~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
...+.|+|++++|.... ....... ...++.++++++
T Consensus 63 L~~~~~~dIDiVf~AT~a~~H--~e~a~~a---~eaGk~VID~sP 102 (302)
T PRK08300 63 LAMPEFDDIDIVFDATSAGAH--VRHAAKL---REAGIRAIDLTP 102 (302)
T ss_pred HhCcCCCCCCEEEECCCHHHH--HHHHHHH---HHcCCeEEECCc
Confidence 23678999999986553 2433333 345677776665
No 393
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.26 E-value=0.079 Score=50.96 Aligned_cols=41 Identities=29% Similarity=0.251 Sum_probs=33.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|+|+|+|-+|..-.+.+...|.+|+.+|+++++++.+++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 79999999977755555555589999999999999887653
No 394
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.23 E-value=0.046 Score=51.38 Aligned_cols=91 Identities=21% Similarity=0.182 Sum_probs=64.4
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+..++-.+++...-. -.=++|.|||-|. +|.+++..|.+.|..|++++..-..++
T Consensus 140 PcTp~av~~ll~~~~i~--------l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------- 197 (285)
T PRK10792 140 PCTPRGIMTLLERYGID--------TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------- 197 (285)
T ss_pred CCCHHHHHHHHHHcCCC--------CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH--------------
Confidence 55667777777665421 1227999999877 999999999999999999975422111
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
+.++.+|+||.++.-..- +. .++++++++|++..
T Consensus 198 -----------------------~~~~~ADIvi~avG~p~~-----v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 198 -----------------------HHVRNADLLVVAVGKPGF-----IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred -----------------------HHHhhCCEEEEcCCCccc-----cc--HHHcCCCcEEEEcc
Confidence 247899999999942221 22 25678999988765
No 395
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.045 Score=49.13 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=35.0
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
++|.|.|+ |.+|..++..+++.|++|++.+++++...+..
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL 48 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHH
Confidence 68999996 99999999999999999999999987655443
No 396
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=95.22 E-value=0.12 Score=49.34 Aligned_cols=99 Identities=12% Similarity=0.056 Sum_probs=56.5
Q ss_pred CchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCCC
Q psy9056 4 EPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPL 83 (359)
Q Consensus 4 ~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~~ 83 (359)
-|||.-....||+++|.++ +.++. .++-|....+.+- ..++.+..- ...+++.++++.|+||+++|+.
T Consensus 201 gsGGAla~~~aD~v~m~~~--a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 201 GSGGALAIGVGDKVNMLEY--STYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIPEP 268 (316)
T ss_pred ccHHHhhhccCCEEEEecC--ceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEeccCC
Confidence 3455544446999999987 65554 3333434333322 122222211 3567899999999999999863
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056 84 GPGLNHPEERTMEYLEEVAVNTASQLASGKL 114 (359)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 114 (359)
..+--..++.....+.....+...++...++
T Consensus 269 ~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~ 299 (316)
T TIGR00513 269 LGGAHRNPLAAAASLKEQLLADLATLDQLST 299 (316)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 2222233334445555555555556665554
No 397
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.21 E-value=0.02 Score=41.74 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=27.4
Q ss_pred EECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 225 VLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 225 IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
|||+|.-|.+.|..|.++|++|.++|+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998864
No 398
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.20 E-value=0.066 Score=50.59 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=31.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~ 254 (359)
+++.|+|+|-.+.+++..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 689999999999999999999997 8999999964
No 399
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.19 E-value=0.049 Score=48.16 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=70.1
Q ss_pred hhhHHHHHhHhhhhhh--hhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHH
Q psy9056 193 PQSKGLMGLFRAQTEC--KKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDG 269 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~--~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~ 269 (359)
|-+..++-.+++.... +..+.+. +..=++|.|||- ..+|.++|..|.+.|..|+++|.+.-..-
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~-~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~------------ 100 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGN-RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVF------------ 100 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCC-CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccc------------
Confidence 4455666666665532 1112211 133379999995 88999999999999999999986542110
Q ss_pred HHhhccCChHHHHhhhcccccc--cC----c-CCCCCccEEEEcccCCHH-HHHHHHHHHHHhCCCCcEEEEcCCCCc
Q psy9056 270 AVKRKKMSALDRDRYLASLVGT--LS----Y-DPFKNADMVIEAVFEDIN-IKHQVIKEIEAVVPPHCVVATNTSAIP 339 (359)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~i~~~--~~----~-~~l~~aD~Vi~avp~~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~ 339 (359)
...+.. +-+.+ .+ + +.+++||+||.|++...- +. .+.+++++++++......
T Consensus 101 -~~~~~~----------~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~-------~d~ik~GavVIDVGi~~d 160 (197)
T cd01079 101 -TRGESI----------RHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP-------TELLKDGAICINFASIKN 160 (197)
T ss_pred -cccccc----------ccccccccchhhHHHHHhhhCCEEEEccCCCCCccC-------HHHcCCCcEEEEcCCCcC
Confidence 000000 00001 11 2 457999999999974442 22 235678999988766543
No 400
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.054 Score=50.89 Aligned_cols=92 Identities=23% Similarity=0.197 Sum_probs=64.5
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+..++-.+++...-. -.=++|.|||.| .+|.++|..|.+.|..|++++.....++
T Consensus 138 PcTp~avi~lL~~~~i~--------l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------- 195 (285)
T PRK14191 138 PATPMGVMRLLKHYHIE--------IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------- 195 (285)
T ss_pred CCcHHHHHHHHHHhCCC--------CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH--------------
Confidence 56677777777765421 122799999998 9999999999999999999864432211
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
+.++.||+||.|+....-+. .++++++++|++...
T Consensus 196 -----------------------~~~~~ADIvV~AvG~p~~i~-------~~~vk~GavVIDvGi 230 (285)
T PRK14191 196 -----------------------FYTQNADIVCVGVGKPDLIK-------ASMVKKGAVVVDIGI 230 (285)
T ss_pred -----------------------HHHHhCCEEEEecCCCCcCC-------HHHcCCCcEEEEeec
Confidence 23688999999996333222 234578888876553
No 401
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.98 E-value=0.07 Score=42.23 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
++|.|||.|.+|..=+..|.+.|.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 689999999999999999999999999999886
No 402
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.96 E-value=0.06 Score=46.29 Aligned_cols=94 Identities=23% Similarity=0.220 Sum_probs=57.2
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+..++-.++++.... -.-++|.|||- +.+|.+++..|.++|..|++.+..-+.++
T Consensus 17 PcTp~aii~lL~~~~~~--------l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------- 74 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGID--------LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------- 74 (160)
T ss_dssp -HHHHHHHHHHHHTT-S--------TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH--------------
T ss_pred CCCHHHHHHHHHhcCCC--------CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc--------------
Confidence 33455666666554311 23379999997 57999999999999999999986643222
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
+.++++|+||.++....-++ .+.++++.++++.....
T Consensus 75 -----------------------~~~~~ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 75 -----------------------EITRRADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp -----------------------HHHTTSSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred -----------------------ceeeeccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence 23688999999996443222 33568899888765443
No 403
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.96 E-value=0.13 Score=53.67 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=45.9
Q ss_pred CCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 3 AEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 3 a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
+-|||+-....||+++|.++ +.|++ +.|.++.+.+|...- ++.+ +-..-.++|++.+++|+||+++|.
T Consensus 291 ggSGGAlA~g~aD~VlMle~--A~~sV------isPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 291 GGSGGALAIGCANKLLMLEN--AVFYV------ASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred cchHHHHHhhcCCEEEEecC--CeEEe------cCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence 44566666677999999988 66554 234444444444322 2222 233568999999999999999986
Q ss_pred C
Q psy9056 83 L 83 (359)
Q Consensus 83 ~ 83 (359)
.
T Consensus 359 p 359 (762)
T PLN03229 359 P 359 (762)
T ss_pred C
Confidence 3
No 404
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.96 E-value=0.073 Score=44.75 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=64.4
Q ss_pred hHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhh
Q psy9056 195 SKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKR 273 (359)
Q Consensus 195 ~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~ 273 (359)
.-+++..++++..- + ..=++|.|+|- ...|.+++..|.+.|..|.+.+.+-..++
T Consensus 11 t~~a~~~ll~~~~~---~-----~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~---------------- 66 (140)
T cd05212 11 VAKAVKELLNKEGV---R-----LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ---------------- 66 (140)
T ss_pred HHHHHHHHHHHcCC---C-----CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH----------------
Confidence 44566666655431 1 22379999995 89999999999999999999986532111
Q ss_pred ccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 274 KKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 274 ~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
+.+++||+||.++....-++ .+.+++++++++.....
T Consensus 67 ---------------------~~v~~ADIVvsAtg~~~~i~-------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 67 ---------------------SKVHDADVVVVGSPKPEKVP-------TEWIKPGATVINCSPTK 103 (140)
T ss_pred ---------------------HHHhhCCEEEEecCCCCccC-------HHHcCCCCEEEEcCCCc
Confidence 24789999999997553222 33477899888766543
No 405
>PRK06194 hypothetical protein; Provisional
Probab=94.94 E-value=0.21 Score=46.43 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=37.0
Q ss_pred CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056 219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ 262 (359)
Q Consensus 219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~ 262 (359)
..++|-|.|+ |.+|..++..|++.|++|+++|++.+.++.....
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAE 49 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 3468889986 9999999999999999999999998776665443
No 406
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=94.94 E-value=0.066 Score=47.63 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcc---------------hHhHHhhhcCh--HHHHHHHhc
Q psy9056 1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAG---------------GTQRLPKLTAL--PNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g---------------~~~~l~~~~g~--~~a~~~~lt 61 (359)
|+|.+.|..|++++|. |++.++ ++|-+-...-|..-... ....+.+..|. ....+++-.
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~--a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQH--SRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCC--CEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 5678889999999885 888877 77777776433211110 01112223332 334455556
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy9056 62 GKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~~~~ 82 (359)
...++|+||+++||+|++++.
T Consensus 170 d~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred CcCCCHHHHHHcCCCcEEecc
Confidence 667999999999999999976
No 407
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.94 E-value=0.085 Score=49.70 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=26.7
Q ss_pred EEEEECCCcchHHHHHHHHHC-CCee-EEecCCHHH
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDK-GYNT-IVKDSFEKG 255 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~ 255 (359)
+|+|||+|.+|..++..+.+. +.++ .++|++++.
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es 38 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPES 38 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCccc
Confidence 899999999999987777654 5565 457888865
No 408
>PRK09186 flagellin modification protein A; Provisional
Probab=94.88 E-value=0.37 Score=43.82 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=35.9
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++....
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLE 46 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHH
Confidence 67889996 899999999999999999999999887665544
No 409
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.88 E-value=0.07 Score=51.99 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 689999999999999999999998 789998775
No 410
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.88 E-value=0.023 Score=54.00 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=29.7
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 255 (359)
+|.|||+|.-|..+|..|+++|++|+++|+++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 6999999999999999999999999999998653
No 411
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.87 E-value=0.081 Score=48.70 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=29.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCC-----------CeeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKG-----------YNTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G-----------~~V~l~d~~~ 253 (359)
.+|.|||+|-+|+.++..|++.| .+++++|.|.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 58999999999999999999874 2899999774
No 412
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.86 E-value=0.025 Score=56.22 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=34.5
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 255 (359)
|+.++|.|||.|.+|.++|..+.+.|++|+++|++++.
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~ 38 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEA 38 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45679999999999999999999999999999988764
No 413
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.85 E-value=0.055 Score=49.23 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=30.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 689999999999999999999998 788998664
No 414
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.81 E-value=0.16 Score=51.17 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.5
Q ss_pred CccEEEEECCCcchHH-HHHHHHHCCCeeEEecCCHH
Q psy9056 219 PVKTVAVLGAGLMGAG-IAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~-iA~~l~~~G~~V~l~d~~~~ 254 (359)
+.++|.|||.|..|.+ +|..|.+.|++|.++|.++.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4468999999999999 79999999999999998764
No 415
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.81 E-value=0.032 Score=53.06 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=29.7
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF 252 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~ 252 (359)
.|.|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999988
No 416
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.80 E-value=0.031 Score=55.16 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=31.1
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
+|.|||+|.+|.++|..++++|++|+++|++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999753
No 417
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.77 E-value=0.1 Score=48.97 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=66.3
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+..|+-.++++.... -.=++|.|||-+ ..|.++|..+.+.|..|+++..+...++
T Consensus 133 PcTp~av~~ll~~~~i~--------l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------- 190 (279)
T PRK14178 133 PCTPNGIMTLLHEYKIS--------IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------- 190 (279)
T ss_pred CCCHHHHHHHHHHcCCC--------CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH--------------
Confidence 55667777777766421 222799999987 9999999999999999999986653322
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+.+++||+||-+++-..-+.. ++++++++|++....
T Consensus 191 -----------------------~~~~~ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~ 226 (279)
T PRK14178 191 -----------------------AELRQADILVSAAGKAGFITP-------DMVKPGATVIDVGIN 226 (279)
T ss_pred -----------------------HHHhhCCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence 236889999999963322222 235899998876543
No 418
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.76 E-value=0.031 Score=53.96 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=55.9
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCCee---EEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccC-c
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNT---IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLS-Y 294 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V---~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 294 (359)
+.||+|+|+ |+.|..+...|.++||++ ..+.++.+.-+.. . + .+ ..+.+.+. .
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l----~--~-----~g-----------~~i~v~d~~~ 58 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL----S--F-----KG-----------KELKVEDLTT 58 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee----e--e-----CC-----------ceeEEeeCCH
Confidence 358999997 999999999999988854 5554443211110 0 0 00 01222111 1
Q ss_pred CCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 295 DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 295 ~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
..+.++|+||+|+|... -+++...+.+ .+++|++.++..
T Consensus 59 ~~~~~vDvVf~A~g~g~--s~~~~~~~~~---~G~~VIDlS~~~ 97 (334)
T PRK14874 59 FDFSGVDIALFSAGGSV--SKKYAPKAAA---AGAVVIDNSSAF 97 (334)
T ss_pred HHHcCCCEEEECCChHH--HHHHHHHHHh---CCCEEEECCchh
Confidence 23578999999998665 3455555433 467788777654
No 419
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.75 E-value=0.081 Score=48.22 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=29.8
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeE-EecC
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTI-VKDS 251 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~-l~d~ 251 (359)
.-++|+|.|.|++|..++..|.+.|..|+ +.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 34799999999999999999999999988 6677
No 420
>PLN03075 nicotianamine synthase; Provisional
Probab=94.75 E-value=0.21 Score=47.29 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=68.3
Q ss_pred CccEEEEECCCcchHHHHHHHHHCC--CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccc-cCc-
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKG--YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGT-LSY- 294 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~- 294 (359)
.-++|..||+|..|.+-...+++.. -.++.+|.+++..+.+++.+... .+ ..+++++. .|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g---------L~~rV~F~~~Da~ 187 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD---------LSKRMFFHTADVM 187 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC---------ccCCcEEEECchh
Confidence 3489999999998876655555443 36999999999988877654310 00 01234332 122
Q ss_pred ---CCCCCccEEEEcccC--CHHHHHHHHHHHHHhCCCCcEEEEcC
Q psy9056 295 ---DPFKNADMVIEAVFE--DINIKHQVIKEIEAVVPPHCVVATNT 335 (359)
Q Consensus 295 ---~~l~~aD~Vi~avp~--~~~~k~~v~~~l~~~~~~~~ii~s~t 335 (359)
....+-|+|+..+-- +..-+..+++.+.+.++++.+++.-+
T Consensus 188 ~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 188 DVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 235678999987521 22457799999999999999877554
No 421
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.72 E-value=0.52 Score=42.23 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056 218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259 (359)
Q Consensus 218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~ 259 (359)
+..++|.|.|+ |.+|..++..++++|++|++++++++..+..
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 34478999996 9999999999999999999999998765543
No 422
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=94.70 E-value=0.19 Score=47.88 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=57.5
Q ss_pred CchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHhHHhhhcChHHHHHHHhcCCCCCHHHHHHcCCcceecCCC
Q psy9056 4 EPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPL 83 (359)
Q Consensus 4 ~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~~~ltg~~~~a~eA~~~Glv~~~~~~~ 83 (359)
-|||.--...||+++|.++ +.|+. .++-|.+..+.+- ..++.+..- .-.+++.++++.|+||+++|..
T Consensus 201 ~sGGAla~~~aD~v~m~~~--A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 201 GSGGALAIGVGDRVLMLEY--STYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred cHHHHHHHhccCeeeeecC--ceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEeccCC
Confidence 3455544445999999987 65544 4444444444332 233333333 5568999999999999999863
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9056 84 GPGLNHPEERTMEYLEEVAVNTASQLASGKL 114 (359)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 114 (359)
..+-.+.++.....+.+...+...++...++
T Consensus 269 ~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~ 299 (319)
T PRK05724 269 LGGAHRDPEAAAAALKEALLEALAELKGLSP 299 (319)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 1222233434445555555555555555444
No 423
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.68 E-value=0.077 Score=52.10 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=30.3
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSF 252 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 252 (359)
++|.|+|+|-+|+.++..|+..|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 79999988
No 424
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=94.66 E-value=0.012 Score=51.68 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=51.3
Q ss_pred CCCCchHHHHHHhcCE--EEEecCCceEEeccccCCCCCCCcchH---------------hHHhhhcC--hHHHHHHHhc
Q psy9056 1 MFAEPSLATVALACHY--RIVVKDKKTGLGLPEVMLGLLPGAGGT---------------QRLPKLTA--LPNVLDMTLT 61 (359)
Q Consensus 1 ~~a~GgG~~lalacD~--ria~~~~~~~~~~pe~~~Gi~p~~g~~---------------~~l~~~~g--~~~a~~~~lt 61 (359)
|.|...|+.++++||. |++.++ +.|.+-++..+..-...-. ..+....| .....+++-.
T Consensus 83 G~aaSaa~~i~~ag~~~~R~~~~~--s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~ 160 (182)
T PF00574_consen 83 GLAASAATLIFLAGDKGKRYASPN--SRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDR 160 (182)
T ss_dssp EEEETHHHHHHHTSSTTTEEE-TT---EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSS
T ss_pred CccccceehhhhcCCcCceeeeec--CEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhC
Confidence 3567889999999999 999988 9999998876653311110 11111212 2233344444
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy9056 62 GKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 62 g~~~~a~eA~~~Glv~~~~~~ 82 (359)
...++++||+++||+|+++.+
T Consensus 161 ~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 161 DTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp TEEEEHHHHHHHTSSSEEESS
T ss_pred CccccHHHHHHcCCCCEeccC
Confidence 556899999999999999864
No 425
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.62 E-value=0.085 Score=47.73 Aligned_cols=35 Identities=34% Similarity=0.314 Sum_probs=30.6
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.-++|+|.|.|++|..+|..|.+.|. .|.+.|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 33799999999999999999999988 566678887
No 426
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.62 E-value=0.56 Score=42.73 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=38.3
Q ss_pred CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056 218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ 262 (359)
Q Consensus 218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~ 262 (359)
++.++|.|.|+ |.+|..++..|+++|++|++.+++++..+.....
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 34578999997 9999999999999999999999999876665543
No 427
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.079 Score=48.49 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=37.5
Q ss_pred CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++-++|-|+|+ |.+|..++..+++.|++|++.+++++..+....
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 44578999998 999999999999999999999999877655433
No 428
>PLN00016 RNA-binding protein; Provisional
Probab=94.61 E-value=0.11 Score=50.80 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=33.1
Q ss_pred CccEEEEE----CC-CcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056 219 PVKTVAVL----GA-GLMGAGIAHVTVDKGYNTIVKDSFEKG 255 (359)
Q Consensus 219 ~~~kI~II----G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~ 255 (359)
.+++|.|+ |+ |.+|..++..|.+.||+|+++++++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34689999 75 999999999999999999999998764
No 429
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.18 Score=50.88 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=31.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
++|+|+|.|..|.++|..|.+.|++|.++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 6899999999999999999999999999998753
No 430
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.61 E-value=0.081 Score=51.81 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=30.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 589999999999999999999997 899999873
No 431
>PRK06847 hypothetical protein; Provisional
Probab=94.60 E-value=0.034 Score=54.03 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=32.5
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
+++|.|||+|.-|..+|..|.+.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 57899999999999999999999999999998764
No 432
>PRK11579 putative oxidoreductase; Provisional
Probab=94.59 E-value=0.091 Score=50.85 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=43.2
Q ss_pred cEEEEECCCcchHH-HHHHHHHC-CCeeE-EecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcC-C
Q psy9056 221 KTVAVLGAGLMGAG-IAHVTVDK-GYNTI-VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYD-P 296 (359)
Q Consensus 221 ~kI~IIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 296 (359)
-||||||+|.+|.. .+..+.+. +.+|+ ++|+++++... . . ....+.+|++ .
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~---~----------~------------~~~~~~~~~~el 59 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA---D----------W------------PTVTVVSEPQHL 59 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh---h----------C------------CCCceeCCHHHH
Confidence 48999999999985 45555543 66664 68998765321 0 0 0122345553 3
Q ss_pred C--CCccEEEEcccCCHH
Q psy9056 297 F--KNADMVIEAVFEDIN 312 (359)
Q Consensus 297 l--~~aD~Vi~avp~~~~ 312 (359)
+ .+.|+|++|+|....
T Consensus 60 l~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 60 FNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred hcCCCCCEEEEcCCcHHH
Confidence 4 468999999997764
No 433
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.54 Score=44.70 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=40.1
Q ss_pred CCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056 215 KPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI 263 (359)
Q Consensus 215 ~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~ 263 (359)
.+.++-+++-|.|+ +-+|..+|..|++.|++|++.+++.++.++..+.+
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 34455578888886 88999999999999999999999998877655443
No 434
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.57 E-value=0.035 Score=54.39 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=32.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
.+|.|||+|..|.++|..|+++|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5899999999999999999999999999998865
No 435
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.56 E-value=0.11 Score=49.96 Aligned_cols=86 Identities=22% Similarity=0.190 Sum_probs=61.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
|++.|.|.|-.|.++|..+...|-+|++++.||-+.-++ .++.+.+.+-.++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 578899999999999999999999999999999653222 22445555555778889
Q ss_pred cEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEc
Q psy9056 301 DMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN 334 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ 334 (359)
|++|-++-..--+. .+....++++.|++..
T Consensus 266 DifiT~TGnkdVi~----~eh~~~MkDgaIl~N~ 295 (420)
T COG0499 266 DIFVTATGNKDVIR----KEHFEKMKDGAILANA 295 (420)
T ss_pred CEEEEccCCcCccC----HHHHHhccCCeEEecc
Confidence 99998885332222 2233346778888643
No 436
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.55 E-value=0.22 Score=49.85 Aligned_cols=80 Identities=13% Similarity=0.001 Sum_probs=50.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEe-c----------CCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVK-D----------SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV 289 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~-d----------~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 289 (359)
++|+|.|.|++|...|..+...|..|+.+ | .|.+.+.+....-...+..+.+.. ...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~------------~~~ 300 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEF------------GAE 300 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhc------------CCe
Confidence 69999999999999999999999998877 8 676655443321101111111100 111
Q ss_pred cccCcCC-CCCccEEEEcccCCHH
Q psy9056 290 GTLSYDP-FKNADMVIEAVFEDIN 312 (359)
Q Consensus 290 ~~~~~~~-l~~aD~Vi~avp~~~~ 312 (359)
..+..+. -.+||++|.|..++.-
T Consensus 301 ~i~~~~i~~~d~DVliPaAl~n~I 324 (445)
T PRK09414 301 YLEGGSPWSVPCDIALPCATQNEL 324 (445)
T ss_pred ecCCccccccCCcEEEecCCcCcC
Confidence 1111122 2579999999987763
No 437
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.53 E-value=0.59 Score=42.40 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=36.5
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
-++|.|.|+ |.+|..++..|+..|++|++++++++..+....
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAE 46 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 368999995 999999999999999999999999887665443
No 438
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.53 E-value=0.089 Score=53.28 Aligned_cols=40 Identities=38% Similarity=0.541 Sum_probs=35.3
Q ss_pred CCCCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056 216 PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255 (359)
Q Consensus 216 ~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 255 (359)
++-..++|.|+|+|..|.++|..+.+.|++|.++|++...
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 4456689999999999999999999999999999987643
No 439
>PRK06753 hypothetical protein; Provisional
Probab=94.52 E-value=0.035 Score=53.94 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=31.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
.+|.|||+|..|.+.|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3799999999999999999999999999998875
No 440
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.11 Score=48.89 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=64.2
Q ss_pred ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCCc-chHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHH
Q psy9056 192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGL-MGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGA 270 (359)
Q Consensus 192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~ 270 (359)
-|-+-+++-.++++..-. -.=++|.|||-+. +|.++|..|.+.|..|++++..-..++
T Consensus 144 ~PcTp~av~~ll~~~~i~--------l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~------------- 202 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVD--------IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK------------- 202 (287)
T ss_pred CCCcHHHHHHHHHHcCCC--------CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------
Confidence 355667777777765421 1227999999877 999999999999999999984322111
Q ss_pred HhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 271 VKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 271 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
+.++++|+||.|+--.. ++. .++++++++|++...
T Consensus 203 ------------------------~~~~~ADIvv~AvG~p~-----~i~--~~~vk~gavVIDvGi 237 (287)
T PRK14176 203 ------------------------KYTLDADILVVATGVKH-----LIK--ADMVKEGAVIFDVGI 237 (287)
T ss_pred ------------------------HHHhhCCEEEEccCCcc-----ccC--HHHcCCCcEEEEecc
Confidence 23688999998774222 221 235778999887654
No 441
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.49 E-value=0.083 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.8
Q ss_pred cEEEEECCCcchHHHHHHHHHC
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDK 242 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~ 242 (359)
-+|+|+|+|.||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999998765
No 442
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.49 E-value=0.078 Score=48.75 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=31.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKG 255 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~ 255 (359)
.+|.|+|+|-+|+.++..|++.|. +++++|.+.-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 689999999999999999999997 78998877543
No 443
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.47 E-value=0.04 Score=54.03 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=31.0
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
.+|.|||+|..|.+.|..|++.|++|+++|..+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 579999999999999999999999999999764
No 444
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.45 E-value=0.044 Score=45.45 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=29.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 589999999999999999999998 799998764
No 445
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.43 E-value=0.68 Score=41.79 Aligned_cols=40 Identities=33% Similarity=0.386 Sum_probs=35.5
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
++|.|+|+ |.+|..++..+++.|++|++.+++++..+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 68999996 99999999999999999999999987765543
No 446
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.79 Score=41.06 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=35.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|.|+|+ |.+|..++..|++.|++|++++++++.++...+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 67999986 999999999999999999999999877665443
No 447
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.42 E-value=0.18 Score=51.23 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=32.2
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 255 (359)
++|.|+|.|..|.+.+..+...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999977654
No 448
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.41 E-value=0.27 Score=47.74 Aligned_cols=40 Identities=30% Similarity=0.243 Sum_probs=35.5
Q ss_pred EEEEECCCcchHHHHHHHHHCCC-eeEEecCCHHHHHHHHH
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLG 261 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~l~~~~~ 261 (359)
+|.|+|+|.+|.-.+..+...|. +|++.|+++++++.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999999888888885 78888999999888765
No 449
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.39 E-value=0.042 Score=53.37 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.6
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
-.|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 359999999999999999999999999999864
No 450
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.38 E-value=0.1 Score=47.61 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI 263 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~ 263 (359)
++|-|.|+ |.+|..++..+++.|++|++.+++++..+.....+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 67889986 99999999999999999999999988766654433
No 451
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.35 E-value=0.63 Score=42.96 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=34.3
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
+++.|.|+ |.+|..++..+++.|++|++++++++.++...
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~ 41 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV 41 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36888886 99999999999999999999999987765543
No 452
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.34 E-value=0.11 Score=49.55 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=50.9
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCC
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKN 299 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 299 (359)
.||+|+|+ |+.|.-+.+.|.++- +|-+.....+.. +...+..+.+++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~-------------------------------~~~~~~~~~~~~ 49 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR-------------------------------KDAAERAKLLNA 49 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc-------------------------------cCcCCHhHhhcC
Confidence 48999997 999999999999874 343433332210 000001123578
Q ss_pred ccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC
Q psy9056 300 ADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338 (359)
Q Consensus 300 aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 338 (359)
+|+||.|+|.... ..+...+. ..++.|++.++..
T Consensus 50 ~D~vFlalp~~~s--~~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 50 ADVAILCLPDDAA--REAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred CCEEEECCCHHHH--HHHHHHHH---hCCCEEEECChHH
Confidence 9999999986653 34444442 3578888887644
No 453
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.34 E-value=0.048 Score=53.08 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.5
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
...+|.|||+|.+|.+.|..|++.|++|+++|.+.-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 346899999999999999999999999999997763
No 454
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.89 Score=41.11 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.4
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~ 259 (359)
++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV 45 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence 68999997 9999999999999999999999998765543
No 455
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.31 E-value=0.24 Score=44.58 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=35.9
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|.|.|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 68999997 889999999999999999999999887665433
No 456
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.65 Score=43.68 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=36.1
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 67899996 999999999999999999999999887765543
No 457
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.77 Score=41.37 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=36.4
Q ss_pred CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
+++++.|.|+ |.+|..++..++++|++|++.+++++..+...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4678999996 99999999999999999999999987655543
No 458
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.29 E-value=0.04 Score=53.58 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=29.3
Q ss_pred EEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF 252 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~ 252 (359)
.|.|||+|.+|.++|..|++.|++|+++|..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4899999999999999999999999999985
No 459
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.27 E-value=0.66 Score=42.27 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=35.7
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAE 52 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 68999996 999999999999999999999999877655433
No 460
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.27 E-value=0.24 Score=51.10 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=36.3
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ 262 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~ 262 (359)
+.|.|.|+ |.+|..++..|++.|++|++++|+.++++.....
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~ 123 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQS 123 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 56889997 9999999999999999999999999887665443
No 461
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.23 E-value=0.055 Score=47.99 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=44.0
Q ss_pred CCCchHHHHHHhcCEEEEecCCceEEeccccCCCCCCCcchHh----------------------HHhhhcChH--HHHH
Q psy9056 2 FAEPSLATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ----------------------RLPKLTALP--NVLD 57 (359)
Q Consensus 2 ~a~GgG~~lalacD~ria~~~~~~~~~~pe~~~Gi~p~~g~~~----------------------~l~~~~g~~--~a~~ 57 (359)
.|...|..|++++|.. -+|++|..++=|+++.|+.. .+...-|.. .-..
T Consensus 95 ~AaSmgs~l~~aG~~g-------~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~ 167 (200)
T COG0740 95 QAASMGSVLLMAGDKG-------KRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEK 167 (200)
T ss_pred HHHhHHHHHHhcCCCC-------CceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3445567777777764 45666666666666655432 111222221 1112
Q ss_pred HHhcCCCCCHHHHHHcCCcceecCC
Q psy9056 58 MTLTGKTLKADKAKKMGIVDQLVEP 82 (359)
Q Consensus 58 ~~ltg~~~~a~eA~~~Glv~~~~~~ 82 (359)
.+-....++|+||+++||+|++...
T Consensus 168 d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 168 DTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred hhcccccCCHHHHHHcCCcceeccc
Confidence 2223456999999999999999986
No 462
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.75 Score=42.23 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=36.3
Q ss_pred CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
+-++|-|.|+ |.+|..++..|++.|++|++++++++.++....
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 52 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAE 52 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3468999996 789999999999999999999999877665443
No 463
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.22 E-value=0.22 Score=49.88 Aligned_cols=35 Identities=31% Similarity=0.258 Sum_probs=32.0
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
-++|.|+|.|.+|.++|..|++.|++|+++|.+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 36899999999999999999999999999998754
No 464
>KOG0068|consensus
Probab=94.21 E-value=0.12 Score=49.30 Aligned_cols=94 Identities=19% Similarity=0.132 Sum_probs=66.1
Q ss_pred CCccEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH-HHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK-GLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDP 296 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 296 (359)
-.=|+++|+|.|.+|+-+|.++-.-|-.|+.||.=.. ...++ -.++..+-.+.
T Consensus 144 l~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a--------------------------~gvq~vsl~Ei 197 (406)
T KOG0068|consen 144 LRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA--------------------------FGVQLVSLEEI 197 (406)
T ss_pred EeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh--------------------------ccceeeeHHHH
Confidence 3347899999999999999999999999999975432 21111 01333333367
Q ss_pred CCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 297 FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 297 l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+..||+|-.-+|-.++..+-+-.+.-..++.+.-|+..+-|
T Consensus 198 l~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 198 LPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred HhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 89999999988877776555555555567888877655544
No 465
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.20 E-value=0.039 Score=54.36 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=32.1
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
++|.|||+|.-|.+.|..|+++|++|.++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998864
No 466
>PRK08223 hypothetical protein; Validated
Probab=94.20 E-value=0.063 Score=50.55 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=30.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~ 254 (359)
.+|.|||+|-+|+.++..|+..|. +++++|.|.-
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 689999999999999999999998 7999987753
No 467
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.14 E-value=0.049 Score=53.49 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.8
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
...|.|||+|..|..+|..|+++|++|.++|+++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 3579999999999999999999999999999983
No 468
>PRK06196 oxidoreductase; Provisional
Probab=94.12 E-value=0.18 Score=47.85 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=37.5
Q ss_pred CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHH
Q psy9056 219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ 262 (359)
Q Consensus 219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~ 262 (359)
+-++|.|.|+ |.+|..++..|++.|++|++.++++++.++....
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 3368999997 8999999999999999999999998877665443
No 469
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.11 E-value=0.21 Score=45.64 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=30.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999998 899999775
No 470
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.10 E-value=0.052 Score=51.32 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=28.4
Q ss_pred EEEEECCCcchHHHHHHHHHCCC-eeEEecCCH
Q psy9056 222 TVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFE 253 (359)
Q Consensus 222 kI~IIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 253 (359)
||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999997 688887653
No 471
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.09 E-value=0.17 Score=48.49 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=58.1
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCC-CeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccccc-CcC-
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKG-YNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTL-SYD- 295 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~- 295 (359)
|.||+|+|+ |+-|.-+.+.|+.+- .+|.++..+..+ .+.. ........ | .. .+.+.. +.+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~-g~~~---~~~~p~l~--g---------~~-~l~~~~~~~~~ 65 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERA-GKPV---SDVHPNLR--G---------LV-DLPFQTIDPEK 65 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhc-CCch---HHhCcccc--c---------cc-ccccccCChhh
Confidence 579999997 999999999998884 477777654421 1111 11000000 0 00 022211 112
Q ss_pred -CCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCcH
Q psy9056 296 -PFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340 (359)
Q Consensus 296 -~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 340 (359)
...+||+||.|+|..... ++..++.+ .++.|++.|....+
T Consensus 66 ~~~~~~DvvFlalPhg~s~--~~v~~l~~---~g~~VIDLSadfR~ 106 (349)
T COG0002 66 IELDECDVVFLALPHGVSA--ELVPELLE---AGCKVIDLSADFRL 106 (349)
T ss_pred hhcccCCEEEEecCchhHH--HHHHHHHh---CCCeEEECCccccc
Confidence 346699999999987743 55555543 35557777766554
No 472
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.08 E-value=0.052 Score=53.08 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCccEEEEECCCcchHHHHHHHHHC---CCeeEEecCC
Q psy9056 218 TPVKTVAVLGAGLMGAGIAHVTVDK---GYNTIVKDSF 252 (359)
Q Consensus 218 ~~~~kI~IIG~G~mG~~iA~~l~~~---G~~V~l~d~~ 252 (359)
|+..+|.|||+|..|.++|..|+++ |++|+++|+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3456799999999999999999998 9999999994
No 473
>PRK08643 acetoin reductase; Validated
Probab=94.06 E-value=0.98 Score=41.09 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=34.9
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
+++.|+|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAAD 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46778886 999999999999999999999999887665544
No 474
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.05 E-value=0.048 Score=53.23 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=30.8
Q ss_pred ccEEEEECCCcchHHHHHHHHHCCCeeEEecCC
Q psy9056 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSF 252 (359)
Q Consensus 220 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~ 252 (359)
|.+|.|||+|..|.++|..|++.|++|+++|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 457999999999999999999999999999976
No 475
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.04 E-value=0.36 Score=37.92 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=61.8
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhccccc-ccCc----C
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVG-TLSY----D 295 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~ 295 (359)
.+|--||+|.=..++...-...|.+|+.+|.+++.++.+.+.... .+ ..+++++ ..|. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~---------~~~~i~~~~~d~~~~~~ 66 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EG---------LSDRITFVQGDAEFDPD 66 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TT---------TTTTEEEEESCCHGGTT
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cC---------CCCCeEEEECccccCcc
Confidence 578889998833333222224899999999999998887765411 00 0123332 1222 3
Q ss_pred CCCCccEEEEcc-----cCCHHHHHHHHHHHHHhCCCCcEEEE
Q psy9056 296 PFKNADMVIEAV-----FEDINIKHQVIKEIEAVVPPHCVVAT 333 (359)
Q Consensus 296 ~l~~aD~Vi~av-----p~~~~~k~~v~~~l~~~~~~~~ii~s 333 (359)
.....|+|+... .-+....+.+++.+.+.++|+.+++.
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 456789999866 22224567888999999988886654
No 476
>PRK07588 hypothetical protein; Provisional
Probab=94.03 E-value=0.048 Score=53.45 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=31.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
.+|.|||+|..|.++|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998764
No 477
>PRK09072 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.81 Score=41.93 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=35.1
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
++|.|.|+ |.+|..++..+++.|++|++.+++++.++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALA 46 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 67999995 99999999999999999999999988766543
No 478
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.03 E-value=0.11 Score=48.59 Aligned_cols=93 Identities=24% Similarity=0.221 Sum_probs=63.7
Q ss_pred ChhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECCC-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHH
Q psy9056 192 TPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAG-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGA 270 (359)
Q Consensus 192 s~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~ 270 (359)
-|-+..++-.++++..- + -.=++|.|||-+ .+|.++|..|.+.|..|++.......++
T Consensus 137 ~PcTp~avi~lL~~~~i---~-----l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~------------- 195 (281)
T PRK14183 137 VPCTPLGVMELLEEYEI---D-----VKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK------------- 195 (281)
T ss_pred CCCcHHHHHHHHHHcCC---C-----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------
Confidence 35566777777766642 1 222699999976 9999999999999999998863321111
Q ss_pred HhhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCC
Q psy9056 271 VKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336 (359)
Q Consensus 271 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts 336 (359)
+.++.||+||.|+.-.. ++. .++++++++|++...
T Consensus 196 ------------------------~~~~~ADIvV~AvGkp~-----~i~--~~~vk~gavvIDvGi 230 (281)
T PRK14183 196 ------------------------AHTKKADIVIVGVGKPN-----LIT--EDMVKEGAIVIDIGI 230 (281)
T ss_pred ------------------------HHHhhCCEEEEecCccc-----ccC--HHHcCCCcEEEEeec
Confidence 23688999999996322 222 345678898876553
No 479
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.98 Score=41.05 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
+.-++|.|.|+ |.+|..++..+++.|++|++.++++++++....
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 33478999996 999999999999999999999999987665543
No 480
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.98 E-value=0.8 Score=41.91 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=36.0
Q ss_pred EEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056 222 TVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI 263 (359)
Q Consensus 222 kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~ 263 (359)
+|-|.|+ |.+|.+++..|++.|++|++.+++++.+++..+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 6888886 88999999999999999999999988776655443
No 481
>PRK08013 oxidoreductase; Provisional
Probab=93.97 E-value=0.049 Score=53.68 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.9
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHH
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 254 (359)
..|.|||+|..|.++|..|+++|++|+++|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999998875
No 482
>PRK07102 short chain dehydrogenase; Provisional
Probab=93.93 E-value=0.13 Score=46.50 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=36.5
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
|++|.|.|+ |.+|..++..++++|++|++.+++++..+....
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 43 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLAD 43 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence 468899995 999999999999999999999999987665444
No 483
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.85 Score=42.97 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 216 PQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 216 ~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++.+-++|-|.|+ |.+|..++..|++.|++|++.+++.+..+...+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~ 58 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAA 58 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4445578889986 999999999999999999999999887665443
No 484
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.91 E-value=0.09 Score=50.77 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=34.5
Q ss_pred ccEEEEECC-CcchHHHHHHHHHC-C-CeeEEecCCHHHHHHHH
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDK-G-YNTIVKDSFEKGLARGL 260 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~-G-~~V~l~d~~~~~l~~~~ 260 (359)
-++|.|+|+ |.||+.++..++.. | .+|++++++.++++...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La 198 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ 198 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence 378999998 89999999999864 5 58999999988766543
No 485
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.88 Score=43.77 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=37.3
Q ss_pred CCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 218 TPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 218 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++.++|.|.|+ |.+|..++..|++.|++|++++++++.++...+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~ 50 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAA 50 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 34468999996 999999999999999999999999887665443
No 486
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.13 Score=47.16 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=36.9
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
|++|-|.|+ |.+|..++..+++.|++|++++++++.++....
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 578999996 999999999999999999999999987766544
No 487
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.12 Score=47.16 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=35.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|.|.|+ |.+|..++..|++.|++|++++++++.++....
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57889997 899999999999999999999999887766544
No 488
>PLN02985 squalene monooxygenase
Probab=93.86 E-value=0.087 Score=53.95 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=32.1
Q ss_pred CccEEEEECCCcchHHHHHHHHHCCCeeEEecCCH
Q psy9056 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253 (359)
Q Consensus 219 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 253 (359)
...+|.|||+|..|.+.|..|+++|++|.++|+++
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 34589999999999999999999999999999875
No 489
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.85 E-value=1.2 Score=40.74 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=38.0
Q ss_pred CCccEEEEECC-C-cchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHH
Q psy9056 218 TPVKTVAVLGA-G-LMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQI 263 (359)
Q Consensus 218 ~~~~kI~IIG~-G-~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~ 263 (359)
++-+++.|.|+ | -+|..++..+++.|++|++.++++++++.....+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 34478999997 6 5999999999999999999999988776655433
No 490
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.87 Score=41.45 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=35.8
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
+++-|.|+ |.+|..++..|++.|++|++.+++.+.++....
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 57888897 899999999999999999999999887666544
No 491
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.83 E-value=0.38 Score=43.25 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=51.5
Q ss_pred cEEEEECCCcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHHhhccCChHHHHhhhcccccccCcCCCCCc
Q psy9056 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA 300 (359)
Q Consensus 221 ~kI~IIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~a 300 (359)
++|.|||.|.+|..=+..|++.|-+|+++..+. ..+... ..+.+.+. -+.-.-+.+.+.++
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~--------~~~~~~i~---------~~~~~~~~~~~~~~ 73 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKA--------LIEEGKIK---------WIEREFDAEDLDDA 73 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHH--------HHHhcCcc---------hhhcccChhhhcCc
Confidence 689999999999999999999999999998776 222221 12222111 01101112446669
Q ss_pred cEEEEcccCCHHHHHHHHHH
Q psy9056 301 DMVIEAVFEDINIKHQVIKE 320 (359)
Q Consensus 301 D~Vi~avp~~~~~k~~v~~~ 320 (359)
++||.|++ |..+-+.+++.
T Consensus 74 ~lviaAt~-d~~ln~~i~~~ 92 (210)
T COG1648 74 FLVIAATD-DEELNERIAKA 92 (210)
T ss_pred eEEEEeCC-CHHHHHHHHHH
Confidence 99999986 44445555544
No 492
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=93.80 E-value=1.1 Score=40.69 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=36.4
Q ss_pred CccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 219 PVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 219 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
+-++|-|.|+ |.+|..++..|++.|++|++++++++.++....
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~ 54 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYD 54 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Confidence 3468889986 999999999999999999999999877665443
No 493
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.18 Score=46.64 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=36.6
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
-++|-|.|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 367899997 999999999999999999999999988766543
No 494
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.75 E-value=0.98 Score=41.22 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=36.1
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
-++|-|.|+ |.+|..++..|++.|++|++.+++++.++....
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAA 54 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 368999986 999999999999999999999999887665443
No 495
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.74 E-value=1 Score=40.63 Aligned_cols=40 Identities=30% Similarity=0.377 Sum_probs=35.0
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~ 260 (359)
++|-|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA 47 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 67899997 99999999999999999999999987655443
No 496
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.86 Score=42.25 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=34.6
Q ss_pred ccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHH
Q psy9056 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLAR 258 (359)
Q Consensus 220 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~ 258 (359)
.++|-|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~ 43 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARAD 43 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHH
Confidence 467999996 999999999999999999999999876544
No 497
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.71 E-value=0.13 Score=47.03 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=36.0
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
++|-|.|+ |.+|..++..|++.|++|++.+++.+.++....
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 57889986 999999999999999999999999987766544
No 498
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.70 E-value=0.74 Score=41.82 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=34.0
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~ 259 (359)
++|-|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 36889996 9999999999999999999999998765543
No 499
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.70 E-value=0.14 Score=48.09 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=64.8
Q ss_pred hhhHHHHHhHhhhhhhhhcCCCCCCCCccEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHHHHHHhHHHHH
Q psy9056 193 PQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271 (359)
Q Consensus 193 ~~~~~~~~af~~k~~~~~~~~~~~~~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 271 (359)
|-+..++-.+++...- + -.=++|.|||- ..+|.+++..|.+.|..|++++..-..++
T Consensus 140 PcTp~avi~ll~~y~i---~-----l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~-------------- 197 (284)
T PRK14177 140 PCTPYGMVLLLKEYGI---D-----VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLP-------------- 197 (284)
T ss_pred CCCHHHHHHHHHHhCC---C-----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH--------------
Confidence 4456777777765532 1 22279999995 89999999999999999999984422111
Q ss_pred hhccCChHHHHhhhcccccccCcCCCCCccEEEEcccCCHHHHHHHHHHHHHhCCCCcEEEEcCCC
Q psy9056 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~aD~Vi~avp~~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 337 (359)
+.+++||+||.|+.-.- ++. .++++++++|++...+
T Consensus 198 -----------------------~~~~~ADIvIsAvGk~~-----~i~--~~~ik~gavVIDvGin 233 (284)
T PRK14177 198 -----------------------SIVRQADIIVGAVGKPE-----FIK--ADWISEGAVLLDAGYN 233 (284)
T ss_pred -----------------------HHHhhCCEEEEeCCCcC-----ccC--HHHcCCCCEEEEecCc
Confidence 23688999999986333 222 3457789998876543
No 500
>PRK07677 short chain dehydrogenase; Provisional
Probab=93.69 E-value=1 Score=40.90 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=34.7
Q ss_pred cEEEEECC-CcchHHHHHHHHHCCCeeEEecCCHHHHHHHHH
Q psy9056 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261 (359)
Q Consensus 221 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~l~~~~~ 261 (359)
+++.|.|+ |.+|..++..+++.|++|++.+++++.++....
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~ 43 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKL 43 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788886 889999999999999999999999876665443
Done!