RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9056
(359 letters)
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 524 bits (1352), Expect = 0.0
Identities = 227/347 (65%), Positives = 278/347 (80%), Gaps = 1/347 (0%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALACHYRI KD+KT LGLPEVMLGLLPGAGGTQRLPKLT +P LDM LTGK ++AD+
Sbjct: 126 LALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADR 185
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
AKKMGIVDQLV+PLGPGL EE T+EYLEEVAV A LA+GKL INR K ++ K+
Sbjct: 186 AKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLV-HKITQ 244
Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
+ FVR Q++ A++KVMK + GLYPAPLKILDVVRTG ++GP AGYEAE++ F +L
Sbjct: 245 YVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGEL 304
Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK 249
+MT +SK L+GLF QT+CKKN+ GKPQ PVKT+AVLGAGLMGAGIA V+VDKG T++K
Sbjct: 305 SMTFESKALIGLFHGQTDCKKNKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364
Query: 250 DSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFE 309
D+ GL RG Q+ GL+ VKRKK+++L+RD L++L TL Y FKNADMVIEAVFE
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424
Query: 310 DINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
D+++KH+VIKE+EAVVPPHC++A+NTSA+PI IAA S RP+KV M
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGM 471
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 354 bits (911), Expect = e-117
Identities = 160/346 (46%), Positives = 212/346 (61%), Gaps = 23/346 (6%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALACHYR+ D KT LGLPEV LGLLPG+GGTQRLP+L + LDM LTGK L+A +
Sbjct: 119 LALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ 178
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
A K+G+VD +V P L EVAV A K K R + +++L+
Sbjct: 179 ALKLGLVDDVV---------PHS----ILLEVAVELAK-----KGKPARRPLPVRERLLE 220
Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
R +F +A++K + + G YPAP +ILDVVRTG+EKG S+GYEAEA F +L
Sbjct: 221 ---GNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGEL 277
Query: 190 AMTPQSKGLMGLFRAQTECKK-NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDK-GYNTI 247
AMTP+S L +F A TE KK PV V VLG GLMG GIA+VT K G
Sbjct: 278 AMTPESAALRSIFFATTEMKKDTGSDAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVR 337
Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
+KD +G+ L LD VKR+ + +RD+ +A + GT Y FK+AD+VIEAV
Sbjct: 338 IKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAV 397
Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
FED+ +K Q++ E+E PH + A+NTS++PI +IAAA+ RP++V
Sbjct: 398 FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQV 443
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 288 bits (738), Expect = 2e-91
Identities = 149/347 (42%), Positives = 202/347 (58%), Gaps = 25/347 (7%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALACH R+ D KT LGLPEV LGLLPG+GGTQRLP+L + LDM LTGK L+A +
Sbjct: 114 LALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQ 173
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
A K+G+VD +V P + ++TA ++A I + + +
Sbjct: 174 ALKLGLVDDVV-PQ----------------SILLDTAVEMALKGKPIRKPLSLQERLLEG 216
Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
L R +F +A +K K + G YPA +ILDVVR G+ +G G +AEA F +L
Sbjct: 217 TPLG----RALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGEL 272
Query: 190 AMTPQSKGLMGLFRAQTECKKNRLGKPQTP--VKTVAVLGAGLMGAGIAHVTVDK-GYNT 246
MTP+S L +F A TE KK G TP +K V +LG GLMG GIA VT K G
Sbjct: 273 VMTPESAALRSIFFATTEMKKET-GSDATPAKIKKVGILGGGLMGGGIASVTATKAGIPV 331
Query: 247 IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEA 306
+KD +G+ L LD VKR+ M+ +RD +A + GT Y FK+ D+VIEA
Sbjct: 332 RIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEA 391
Query: 307 VFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
VFED+ +KHQ++K+IE H + A+NTS++PI +IAAA+ RP+ V
Sbjct: 392 VFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENV 438
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 245 bits (629), Expect = 2e-75
Identities = 123/349 (35%), Positives = 176/349 (50%), Gaps = 35/349 (10%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
LA YR+ +GLPE LG++PG GGT RLP+L N L+ GK ++A+ A
Sbjct: 121 VLATDYRVA--SPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDA 178
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL--KINRTKPMIPDKVL 128
K+G VD +V P E L+E A+ Q +GKL K R + P
Sbjct: 179 LKVGAVDAVVAP-------------EKLQEAALALLKQAIAGKLDWKARRQPKLEP---- 221
Query: 129 DVALKFEFVRNQI-----FGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEA 183
LK ++I F AK V + +G YPAP+ + + G E EA
Sbjct: 222 ---LKL----SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEA 274
Query: 184 EGFSQLAMTPQSKGLMGLFRAQTECKK--NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVD 241
+GF +LA T ++ L+G+F K +L K PVK AVLGAG+MG GIA+ +
Sbjct: 275 KGFVKLAKTNVARALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGAGIMGGGIAYQSAS 334
Query: 242 KGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNAD 301
KG I+KD +K L G+ + L+ V+R K+ L+S+ TL Y F+ D
Sbjct: 335 KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVD 394
Query: 302 MVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRP 350
+V+EAV E+ +K V+ E+E V ++A+NTS I I+ +A A KRP
Sbjct: 395 VVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRP 443
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 193 bits (493), Expect = 7e-56
Identities = 115/351 (32%), Positives = 171/351 (48%), Gaps = 29/351 (8%)
Query: 12 LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
LA +RI D +GLPE LG++PG GGT RLP++ N L+ +GK +A+ A
Sbjct: 122 LATDFRIA--DDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDAL 179
Query: 72 KMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL--KINRTKPMIPDKV-- 127
K+G VD +V + L A+ +GKL K R + P K+
Sbjct: 180 KVGAVDAVVTA-------------DKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSK 226
Query: 128 LDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFS 187
++ + F + + A G YPAP+ + + G E EA+GF
Sbjct: 227 IEAMMSFTTAKGMVAQVA--------GPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFV 278
Query: 188 QLAMTPQSKGLMGLFRAQTECKK--NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYN 245
+LA T ++K L+GLF K + K VK AVLGAG+MG GIA+ + KG
Sbjct: 279 KLAKTSEAKALIGLFLNDQYVKGKAKKADKIAKDVKQAAVLGAGIMGGGIAYQSASKGTP 338
Query: 246 TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIE 305
++KD + L GL + L+ V+R +++ L + TLSY F N D+V+E
Sbjct: 339 IVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVE 398
Query: 306 AVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKVRNM 356
AV E+ +K V+ E+E V ++A+NTS I I+ +A A KRP+ M
Sbjct: 399 AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGM 449
>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain. This family also includes lambda crystallin.
Length = 180
Score = 162 bits (413), Expect = 5e-49
Identities = 50/132 (37%), Positives = 84/132 (63%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDR 281
VAV+GAG MGAGIA V G ++ D E+ L + +I+ L V++ +++ D
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60
Query: 282 DRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPIT 341
D LA + T +AD+VIEAV E++++K ++ E++A+ PP ++A+NTS++ IT
Sbjct: 61 DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120
Query: 342 KIAAASKRPDKV 353
++AAA+KRP++
Sbjct: 121 ELAAATKRPERF 132
>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].
Length = 307
Score = 155 bits (393), Expect = 1e-44
Identities = 57/136 (41%), Positives = 87/136 (63%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
+K VAV+GAG+MGAGIA V GY+ ++KD + L R L I+ L+ V++ K++
Sbjct: 1 MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLT 60
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337
+ D LA + T K+AD+VIEAV ED+ +K QV E+EA+ P ++A+NTS+
Sbjct: 61 EEEADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS 120
Query: 338 IPITKIAAASKRPDKV 353
+ IT++A A KRP++
Sbjct: 121 LSITELAEALKRPERF 136
>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 282
Score = 142 bits (359), Expect = 6e-40
Identities = 56/137 (40%), Positives = 89/137 (64%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
++ + V+GAG MG GIA V GY+ ++ D + + RGL I LD VK+ KM+
Sbjct: 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62
Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339
D++ LA + GT D K+AD+VIEA E++++K ++ +++ + P ++ATNTS++
Sbjct: 63 DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122
Query: 340 ITKIAAASKRPDKVRNM 356
IT++AAA+KRPDKV M
Sbjct: 123 ITELAAATKRPDKVIGM 139
>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 292
Score = 123 bits (312), Expect = 6e-33
Identities = 49/135 (36%), Positives = 75/135 (55%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
+K V V+GAG MG GIAHV GY+ ++ D L GL I L V + K+S
Sbjct: 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKIS 61
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337
R LA + + + D+VIEA ED +K ++ ++ V+ P ++ATNTS+
Sbjct: 62 EEARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSS 121
Query: 338 IPITKIAAASKRPDK 352
I IT++A+A+ RP++
Sbjct: 122 ISITRLASATDRPER 136
>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 286
Score = 117 bits (296), Expect = 1e-30
Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
++ V V+GAG MGAGIA V G + +V ++ E+ G +I+ L+ AV R K++
Sbjct: 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLT 62
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVP-PHCVVATNTS 336
+RD LA L T F + +VIEAV ED +K ++ E++ VV P V+A+NTS
Sbjct: 63 ERERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122
Query: 337 AIPITKIAAASKRPDKV 353
+IPI K+AAA+KRP +V
Sbjct: 123 SIPIMKLAAATKRPGRV 139
>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.
Length = 507
Score = 119 bits (300), Expect = 7e-30
Identities = 51/139 (36%), Positives = 79/139 (56%)
Query: 215 KPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRK 274
+ TVAV+GAG MGAGIA V G+ ++ D+ A I L V++
Sbjct: 2 MALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKG 61
Query: 275 KMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN 334
K++A D LA L + + D+V+EA+ E +++K + ++EA+V P C++ATN
Sbjct: 62 KLTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATN 121
Query: 335 TSAIPITKIAAASKRPDKV 353
TS++ IT IAAA K P++V
Sbjct: 122 TSSLSITAIAAALKHPERV 140
>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 288
Score = 115 bits (289), Expect = 1e-29
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
++ + V+GAG+MG GIA+V G+ T + D ++ L +I + + V R K++
Sbjct: 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60
Query: 280 DRDRYLASLVGTLSYDP-FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338
R LA L +L +AD+VIEAV E + +K V + +A P C +ATNTS +
Sbjct: 61 ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120
Query: 339 PITKIAAASKRPDKVRNM 356
T+IA+ +KRP++V M
Sbjct: 121 SPTEIASFTKRPERVIAM 138
>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase.
Length = 295
Score = 104 bits (261), Expect = 9e-26
Identities = 50/137 (36%), Positives = 84/137 (61%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
+K V V+GAG MG+GIA + G + + DS L+RGL I + L VK+ KMS
Sbjct: 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63
Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339
+ D L + T + + ++AD +IEA+ E ++K ++ E++ + P ++A+NTS+I
Sbjct: 64 EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123
Query: 340 ITKIAAASKRPDKVRNM 356
IT++A+A++RP +V M
Sbjct: 124 ITRLASATQRPQQVIGM 140
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 98.9 bits (247), Expect = 4e-24
Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 31/160 (19%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALAC YRI + K GLPEV LG++PGAGGTQRLP++ + L+M LTG+ ++A +
Sbjct: 108 LALACDYRIAADNAK--FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQE 165
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRTKPMIPDKVL 128
A KMG+VD++V PEE+ L E A+ A +LA L + K +
Sbjct: 166 ALKMGLVDKVV---------PEEQ----LVEEAIELAQRLADKPPLALAALKAAM----- 207
Query: 129 DVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVR 168
A +V + LYPAP DV
Sbjct: 208 ----------RAALEDALPEVRAQALRLYPAPFSTDDVKE 237
>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC.
This 3-hydroxyacyl-CoA dehydrogenase is involved in the
degradation of phenylacetic acid, presumably in steps
following the opening of the phenyl ring. The sequences
included in this model are all found in aparrent operons
with other related genes such as paaA, paaB, paaD, paaE,
paaF and paaN. Some genomes contain these other genes
without an apparent paaC in the same operon - possibly
in these cases a different dehydrogenase involved in
fatty acid degradation may fill in the needed activity.
This enzyme has domains which are members of the
pfam02737 and pfam00725 families.
Length = 503
Score = 101 bits (252), Expect = 2e-23
Identities = 50/139 (35%), Positives = 82/139 (58%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
T V TVAV+GAG MGAGIA V G+ ++ D + LAR + I+ L+ V + K++
Sbjct: 3 TNVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLT 62
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337
A + +R L L+ +A +VIEA+ E++ +K + ++E + P ++A+NTS+
Sbjct: 63 AEECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSS 122
Query: 338 IPITKIAAASKRPDKVRNM 356
+ IT IAA RP++V +
Sbjct: 123 LSITAIAAGLARPERVAGL 141
>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 291
Score = 98.0 bits (244), Expect = 2e-23
Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTG---LDGAVKRKKM 276
+K + V+G+G+MG GIA V GY+ + D E+ L + I++G L V++ KM
Sbjct: 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62
Query: 277 SALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336
S + +A + + SY+ +AD ++EAV E +++K +V E+E V P ++A+NTS
Sbjct: 63 SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122
Query: 337 AIPITKIAAASKRPDKVRNM 356
I I +IA A +R D+ M
Sbjct: 123 GIMIAEIATALERKDRFIGM 142
>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 311
Score = 94.8 bits (236), Expect = 4e-22
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
P++ +A++GAG MG+GIA + KG ++ D E L R G I+ L
Sbjct: 2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERAL---------G 52
Query: 278 ALDRDRYLASLVGTLSYDP-----FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332
++ +G + + AD+VIEAV E + +K V ++ + P + A
Sbjct: 53 VYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112
Query: 333 TNTSAIPITKIAAASKRPDKVRNM 356
TNTS +PIT IA A RP++
Sbjct: 113 TNTSGLPITAIAQAVTRPERFVGT 136
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 86.7 bits (215), Expect = 1e-19
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALAC RI +D K GLPEV LGLLPG GGTQRLP+L ++ LTG+ + A +A
Sbjct: 117 ALACDIRIAAEDAK--FGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEA 174
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
++G+VD++V ER +E +A + LA+ K + + L+
Sbjct: 175 LELGLVDEVVPDAE----ELLERALELARRLAAPPLA-LAATKRLVRAALEADLAEALEA 229
Query: 131 ALKFEFVRNQIFGKAKEKVM 150
F R +E V
Sbjct: 230 EAL-AFARLFSSEDFREGVR 248
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 84.5 bits (210), Expect = 2e-19
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
+ALAC RI +D GLPEV LGL+PG GGTQRLP+L ++ LTG+ + A
Sbjct: 109 LELALACDIRIAAED--AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISA 166
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV 101
++A ++G+VD++V +E +
Sbjct: 167 EEALELGLVDEVVPD-----EELLAAALELARRL 195
>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 287
Score = 83.1 bits (206), Expect = 4e-18
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 30/149 (20%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
+K V V GAG++G+ IA T G++ + D ++ L + +++++ L
Sbjct: 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKA-------------KERIAKL 49
Query: 280 DRDRYLASLVG-------------TLSYD---PFKNADMVIEAVFEDINIKHQVIKEIEA 323
DRY+ L TL+ D K+AD+VIEAV ED IK +E+
Sbjct: 50 -ADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAK 108
Query: 324 VVPPHCVVATNTSAIPITKIAAASKRPDK 352
V P + ATN+S + ++ A A+ RP+K
Sbjct: 109 VAPEKTIFATNSSTLLPSQFAEATGRPEK 137
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 74.8 bits (184), Expect = 2e-15
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALAC +RI + LGL E L ++PGAGGTQRLP+L + ++ TG+ + A +A
Sbjct: 116 ALACDFRIAAES--ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEA 173
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 118
K++G+V+ +V + EE+ +E E++A N + K I+
Sbjct: 174 KEIGLVEFVVPA-----HLLEEKAIEIAEKIASNGPIAVRQAKEAISN 216
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 72.4 bits (178), Expect = 2e-14
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A++CH R + K LGLPE+ LGL+PG GTQRLP+ L+M LT + + +A
Sbjct: 113 AMSCHIRFATESAK--LGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEA 170
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
K G+V+ + PEE L++ A A ++A
Sbjct: 171 LKWGLVNGV---------FPEE---TLLDD-AKKLAKKIAG 198
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 66.3 bits (162), Expect = 2e-12
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 2 FAEPSLATV---------ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 52
F +P +A V LA IV+ + GLPE+ LG++PGAGGTQRL +
Sbjct: 91 FNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGK 150
Query: 53 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 108
M LTG+++ A +A++ G+V ++ P E T+E ++A A
Sbjct: 151 SLASQMVLTGESITAQQAQQAGLVSEV---------FPPELTLERALQLASKIARH 197
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 64.0 bits (156), Expect = 1e-11
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+++AC RI + K G PEV LG+ PG GGTQRL ++ ++ TG + A++
Sbjct: 115 LSMACDIRIASEKAK--FGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEE 172
Query: 70 AKKMGIVDQLVEP 82
A ++G+V+++VEP
Sbjct: 173 ALRIGLVNKVVEP 185
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 63.5 bits (155), Expect = 1e-11
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 12 LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
LA H I+V + G PE+ +GL+PGAGGTQRL + + M LTG + A +A
Sbjct: 116 LAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEAL 175
Query: 72 KMGIVDQLVE 81
+G+V ++VE
Sbjct: 176 AIGLVSEVVE 185
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 62.6 bits (153), Expect = 3e-11
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
ALAC RI +++ + LPE +GLLP AGGTQ LP L M L G+ + A
Sbjct: 113 CALACDIRIA--EEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAAT 170
Query: 70 AKKMGIVDQLVE 81
A ++G+V+++VE
Sbjct: 171 ALRIGLVEEVVE 182
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 59.8 bits (145), Expect = 3e-10
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+AL+C RI ++ GLPE L ++PGAGGTQRLP+L ++ TG+ + A +
Sbjct: 106 LALSCDLRICGEEAV--FGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGARE 163
Query: 70 AKKMGIVDQLV 80
A MG+V+ V
Sbjct: 164 AASMGLVNYCV 174
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 57.7 bits (140), Expect = 1e-09
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 28 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
G PE+ LG+LPG GG+QRL + +D+ LTG+ + A +A++ G+V ++V
Sbjct: 128 GQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPA 182
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 57.7 bits (140), Expect = 1e-09
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A A H R V D+ T LPE G+ G GG+ R+P+L + + DM LTG+ A +
Sbjct: 111 ASAAHIR--VADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEG 168
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 105
+++G+ LV G L ++ ME +A N
Sbjct: 169 ERLGLAQYLVPA-GEAL----DKAMELARRIAQNA 198
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 56.2 bits (136), Expect = 4e-09
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALA + IV D + LPE LG++P +GG RLPK +M +TG+ + A++
Sbjct: 112 LALAADF-IVCADNAS-FALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEE 169
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
A + GIV+++V P+ M+ E+ A QL +
Sbjct: 170 ALRWGIVNRVV---------PQAELMDRAREL----AQQLVNS 199
>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 308
Score = 57.0 bits (138), Expect = 4e-09
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA 278
P+ +VA++GAGL+G A V G+ + D+ A I L+ +
Sbjct: 1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDG 60
Query: 279 LDRDRYLA--SLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS 336
D LA + +L+ D +AD V E+ E++ +K + E++A+ PPH ++A++TS
Sbjct: 61 EAPDAVLARIRVTDSLA-DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTS 119
Query: 337 AIPITKIAAA 346
A+ +
Sbjct: 120 ALLASAFTEH 129
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 55.8 bits (135), Expect = 6e-09
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALAC IV + T LPE +GL AGG RLP+ L + M LTG+ + A +
Sbjct: 112 LALACDL-IVAAENAT-FALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTARE 169
Query: 70 AKKMGIVDQLVEP 82
++G V+++V
Sbjct: 170 GLELGFVNEVVPA 182
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 55.8 bits (135), Expect = 6e-09
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALAC ++V + GLPEV GL+ GG RLP+ +++ LTG L A++
Sbjct: 109 LALACD--LIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAER 166
Query: 70 AKKMGIVDQLVEP 82
A ++G+V++L EP
Sbjct: 167 AHELGLVNRLTEP 179
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 52.9 bits (128), Expect = 5e-08
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
V+LA +V + LP LGL P AGG+ LP+L +M L G+ L A++
Sbjct: 112 VSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEE 171
Query: 70 AKKMGIVDQLVEP 82
A ++G+V+++V
Sbjct: 172 ALRIGLVNRVVPA 184
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 52.6 bits (127), Expect = 9e-08
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG----TQRL-PKLTALPNVLDMTLTGKTL 65
AL+ H ++ ++ +G PE++ L PG G +R+ PKL ++ L+GK
Sbjct: 140 ALSHHT--IIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAE-----ELILSGKLY 192
Query: 66 KADKAKKMGIVDQLVEP 82
A++ MG+VD LVE
Sbjct: 193 TAEELHDMGLVDVLVED 209
>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 314
Score = 52.0 bits (125), Expect = 2e-07
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 231 MGAGIAHVTVDKGYNTIVKD-------SFEKGLARGLGQIKTGLDGAVKRKKMSALDRDR 283
MG GIA G++ + D + A +I+ L V ++ A D
Sbjct: 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60
Query: 284 YLA--SLVG-TLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340
LA ++V + D +AD+V EAV E ++ K + ++ + V ++A+ TS +
Sbjct: 61 VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120
Query: 341 TKIAAASKRPDKVRNM 356
T + P++ N
Sbjct: 121 TDLQRHVAHPERFLNA 136
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 50.9 bits (122), Expect = 3e-07
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 30 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
PE+ LG+ P GGTQRLP+L L++ LTG A++A ++G+V+ +V
Sbjct: 136 PEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPH 188
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 49.5 bits (119), Expect = 8e-07
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+AL RI D K L + E GL+P GT L L ++T T + A++
Sbjct: 120 IALGADIRIAAPDTK--LSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEE 177
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRT 119
A ++G+V + + P + E+A + +A+ K INR+
Sbjct: 178 ALELGLVTHVSD-------DPLAAALALAREIAQRSPDAIAAAKRLINRS 220
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 46.6 bits (111), Expect = 7e-06
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 35 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERT 94
GL+ G + LP+L N LD+ L+ +T A++A ++G+V+++V P + ERT
Sbjct: 149 GLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPP-----DELMERT 203
Query: 95 MEYLEEVAVNTA 106
+ Y E++A N +
Sbjct: 204 LAYAEDLARNVS 215
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 45.7 bits (109), Expect = 2e-05
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 41 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE 92
GGT RLP+L +D+ LTG+ + AD+A +G+ +++V P G EE
Sbjct: 140 GGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVV-PKGQARAAAEE 190
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 44.6 bits (106), Expect = 4e-05
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 32 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
V LGL+PG GG LP++ + +M TG + A A + G+V ++V
Sbjct: 141 VKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPA 191
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 43.7 bits (103), Expect = 5e-05
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 9 TVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKAD 68
T+ALA +R+ + K G E++ GL P G RL + ++ +G+ A+
Sbjct: 116 TLALAADWRVSGDNVK--FGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAE 173
Query: 69 KAKKMGIVDQLVEP 82
+A +G++D++V P
Sbjct: 174 EALALGLIDEMVAP 187
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 43.9 bits (104), Expect = 5e-05
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALAC RI +D + G+P LGL G G + L L D+ T + A +
Sbjct: 124 IALACDIRIAAEDSR--FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAE 181
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 116
A ++G+V ++ + E +Y +A N L + K I
Sbjct: 182 ALRIGLVHRVTAA-----DDLETALADYAATIAGNAPLTLRAAKRAI 223
>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA
dehydrogenase/thioesterase; Validated.
Length = 495
Score = 44.0 bits (104), Expect = 9e-05
Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
T + A +G G++G G A + G + V D + R +G++ + A +
Sbjct: 2 TMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEA-ERIIGEVLANAERAYAMLTDA 60
Query: 278 ALDRDRYLASLVGTLSY-----DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332
L + G L++ + AD + E+V E +++K +V+ EI+A P ++
Sbjct: 61 PLPPE-------GRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIG 113
Query: 333 TNTSAIPITKIAAASKRPDKV 353
++TS + + P+++
Sbjct: 114 SSTSGFLPSDLQEGMTHPERL 134
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 42.4 bits (100), Expect = 2e-04
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 28 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGL 87
G+ E L P G RL + D+ LTG+ + A +AK++G++ +V P G L
Sbjct: 134 GISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVV-PDGQAL 192
Query: 88 NHPEERTMEYLEEVAVN 104
++ +E E + N
Sbjct: 193 ----DKALELAELINAN 205
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 42.3 bits (100), Expect = 2e-04
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 18 IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVD 77
IVV T EV G+LP G T R P+ N + LTG A +A ++G+V
Sbjct: 116 IVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQ 175
Query: 78 QLVEPLGPGLNHPEERTMEYLEEVA 102
++V P G L ER +E E +A
Sbjct: 176 EVVPP-GEQL----ERAIELAERIA 195
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 42.1 bits (99), Expect = 4e-04
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 10 VALACHYRIVVKDKKTGLGLPEV-MLGLLPGAGGTQRLP-KLTALPNVLDMTLT-GKTLK 66
+ALAC ++V D+ + + LPEV +LG+LPG GG R+ K + D+ T + ++
Sbjct: 137 LALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVR 196
Query: 67 ADKAKKMGIVDQLVEP 82
+AK+ +VD++V+P
Sbjct: 197 GKRAKEWRLVDEVVKP 212
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 41.4 bits (97), Expect = 4e-04
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
A +ALAC IV+ + +GL+P +GGT LP+L + + + G+ L A
Sbjct: 109 ANLALACD--IVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDA 166
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKV 127
A G++ Q+V+ + M+ + +AV+ A+Q G R
Sbjct: 167 RTAASWGLIWQVVD---------DAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNS 217
Query: 128 LDVALKFE 135
LD L E
Sbjct: 218 LDTQLDLE 225
>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.
Length = 550
Score = 41.9 bits (99), Expect = 4e-04
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 11 ALACHYRIVVKDKKTGLGLPEV-MLGLLPGAGGTQRL 46
ALAC ++V D+ + + LPEV +LG+LPG GG R+
Sbjct: 142 ALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV 178
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 41.0 bits (96), Expect = 5e-04
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ AC R +D + EV L + G QRLP + N +++ LTG+ +
Sbjct: 129 IVTACDIRYCSED--AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSE 186
Query: 70 AKKMGIVDQL 79
AK++G+V ++
Sbjct: 187 AKELGLVSRV 196
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 40.7 bits (96), Expect = 5e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 34 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 82
+G+LPG G + RLP+ + M+LTG L A A + G+V ++V
Sbjct: 134 VGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPH 182
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 39.5 bits (93), Expect = 0.001
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
A +ALAC IV+ + V +GL+P +GGT LP+L + L + L G+ L A
Sbjct: 115 ANLALACD--IVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSA 172
Query: 68 DKAKKMGIVDQLVE 81
++A++ G++ ++V+
Sbjct: 173 EQAEQWGLIWRVVD 186
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+A AC RI D + G+PEV +G+ P LP+L + LTG+T+ A +
Sbjct: 118 LAAACDLRIAAHDAQ--FGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQ 174
Query: 70 AKKMGIVDQLVEP 82
A G+VD++V
Sbjct: 175 ALAWGLVDRVVPL 187
>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 321
Score = 37.1 bits (86), Expect = 0.009
Identities = 29/138 (21%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKM- 276
T +KT A +G+G++G+G + G + + D A + A++R+ +
Sbjct: 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAW-PALERQGLA 63
Query: 277 --SALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATN 334
++ R R++A++ + +AD + E+ E +K ++ + I P ++A++
Sbjct: 64 PGASPARLRFVATIEACV-----ADADFIQESAPEREALKLELHERISRAAKPDAIIASS 118
Query: 335 TSAIPITKIAAASKRPDK 352
TS + T A + P++
Sbjct: 119 TSGLLPTDFYARATHPER 136
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 37.0 bits (86), Expect = 0.009
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALAC I+V + G+ P G +Q+L ++ +++LT L A+
Sbjct: 117 IALACD--ILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAET 174
Query: 70 AKKMGIVDQLVEP 82
A++ G+V+ +VE
Sbjct: 175 AERWGLVNHVVEE 187
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 36.1 bits (84), Expect = 0.017
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVM--LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTL 65
AT+ LA R+ + G V G++P A + LP+L L L+ +G+
Sbjct: 129 ATMTLAMDIRLASTAARFGF----VFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVF 184
Query: 66 KADKAKKMGIVDQLVEP 82
A +A G+V + P
Sbjct: 185 DAQEALDGGLVRSVHPP 201
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 35.9 bits (83), Expect = 0.019
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
A +A+A + + KT V +GL P AGG L + L + +TG+ L A
Sbjct: 114 ANMAVAADF--CIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTA 171
Query: 68 DKAKKMGIVDQLVEP 82
+KA + G V ++ E
Sbjct: 172 EKALEYGFVYRVAES 186
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 35.8 bits (83), Expect = 0.021
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 28 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 80
GL E+ G+ PG G ++ + + L +TG+T KA +MG+V++ V
Sbjct: 138 GLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESV 190
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 35.8 bits (83), Expect = 0.022
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AL Y V+ D L + + +GL+P GG L K + GK L A +A
Sbjct: 117 ALTADY--VIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEA 174
Query: 71 KKMGIVDQLVE 81
+G++D+++
Sbjct: 175 LDLGLIDEVIG 185
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 35.7 bits (83), Expect = 0.025
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
A +A AC RI + G + LG RL L V DM T + L+A
Sbjct: 118 AAIAAACDLRIATPSARFGFPIART-LGNCLSMSNLARLVALLGAARVKDMLFTARLLEA 176
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
++A G+V+++VE L+ A A LA+
Sbjct: 177 EEALAAGLVNEVVED-------------AALDARADALAELLAA 207
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 34.9 bits (81), Expect = 0.049
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGA--GGTQRLPKLTALPNVLDMTLTGKTL 65
A +A+A R+ KT V L GA G LP++ ++ TG+++
Sbjct: 129 AILAMASDLRLGTPSAKTAFLFTRVGLA---GADMGACALLPRIIGQGRASELLYTGRSM 185
Query: 66 KADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
A++ ++ G ++LVEP E L A A +LA+G
Sbjct: 186 SAEEGERWGFFNRLVEP-------------EELLAEAQALARRLAAG 219
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 34.3 bits (79), Expect = 0.058
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 53 PNVL-DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
P D+ L L A++A +MGIVD H E E AV +LA+
Sbjct: 154 PAARRDVLLRAAKLTAEEAVEMGIVDSA---------HDSA---EETVEAAVRLGEELAA 201
Query: 112 GK 113
K
Sbjct: 202 RK 203
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 34.5 bits (79), Expect = 0.059
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT---QRLPKLTALPNVLDMTLTGKTLK 66
VA A + D K LG PE++LG+ A +R+ ++ A D+ +G+++
Sbjct: 107 VAAAGNLMFAAPDAK--LGQPEIVLGVFAPAASCLLPERMGRVAAE----DLLYSGRSID 160
Query: 67 ADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEE-VAVNTASQL 109
+ ++G+ + + E PE + + +E A +AS L
Sbjct: 161 GAEGARIGLANAVAE-------DPENAALAWFDEHPAKLSASSL 197
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 34.6 bits (80), Expect = 0.062
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ AC R D K + EV LG++ G QRLP++ ++ ++ LTG+ + A +
Sbjct: 127 LISACDMRYASADAK--FSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAE 184
Query: 70 AKKMGIVDQ 78
A+K+G+V++
Sbjct: 185 AEKIGLVNR 193
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 33.9 bits (78), Expect = 0.091
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL--DMTLTGKTL 65
A + L I+V + GLPE+ +GL G RL + L M LTG +
Sbjct: 111 AGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRL-----FGHSLTRRMMLTGYRV 165
Query: 66 KADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 108
A + + G+++ + P E M E+A AS+
Sbjct: 166 PAAELYRRGVIEACL---------PPEELMPEAMEIAREIASK 199
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 33.6 bits (77), Expect = 0.13
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 34 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 81
+GL+P G T LP+L ++++L G+ L A+ A + G+V+++V+
Sbjct: 143 IGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVD 190
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 33.0 bits (76), Expect = 0.15
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL--DMTLTGKTLKA 67
+ALAC + +D K + V +GL P GG+ L + ALP L ++ L GK + A
Sbjct: 116 LALACDLLVAARDAK--FVMAYVKVGLTPDGGGSWFLAR--ALPRQLATELLLEGKPISA 171
Query: 68 DKAKKMGIVDQLVEP 82
++ +G+V++L EP
Sbjct: 172 ERLHALGVVNRLAEP 186
>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional.
Length = 319
Score = 32.8 bits (75), Expect = 0.25
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 26/129 (20%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
K ++++GAG +G+ +A + + K +V KG+ +G A+ K S L
Sbjct: 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQG---------KALDLKHFSTLV 56
Query: 281 RDRYLASLVGTLSYDPFKNADMVI---------EAVFED-INIKHQVIKEIEAVVPPHC- 329
+++GT +Y+ K++D+V+ E ED + I +++K + V +C
Sbjct: 57 GSN--INILGTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP 114
Query: 330 ----VVATN 334
+ TN
Sbjct: 115 NAFVICVTN 123
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 31.9 bits (73), Expect = 0.40
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 58 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 117
+ TG + +A + G+ + V P +ERT +E +A +QLA KL +N
Sbjct: 188 LLFTGDCITGAQAAEWGLAVEAVPP-----EELDERTERLVERIAAVPVNQLAMVKLAVN 242
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 31.7 bits (72), Expect = 0.44
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 30 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNH 89
P V L L+P AG + P+L + G+ A+ A++ G++ ++V+
Sbjct: 133 PFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDE------- 185
Query: 90 PEERTMEYLEEVAVNTASQLASG---KLKINR 118
E +E + A +LA+ L+I R
Sbjct: 186 ------EAVEAETLKAAEELAAKPPQALQIAR 211
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 31.4 bits (72), Expect = 0.66
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT-ALPN--VLDMTLTGKTLK 66
+ L I V L EV LGL+P P + A+ LT +
Sbjct: 115 MGLVAACDIAVAADHAVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFD 170
Query: 67 ADKAKKMGIVDQLVEP 82
A +A ++G+V ++V
Sbjct: 171 AAEALRLGLVHEVVPA 186
>gnl|CDD|204929 pfam12460, MMS19_N, NER and RNAPII transcription protein n
terminal. This domain family is found in eukaryotes,
and is approximately 60 amino acids in length. MMS19 is
required for both nucleotide excision repair (NER) and
RNA polymerase II (RNAP II) transcription.
Length = 64
Score = 28.7 bits (65), Expect = 0.83
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 69 KAKKMGIVDQLVEPLGPGLNHPEE----RTMEYLEEV 101
+ K+ ++ LVE LG L + + ++ L EV
Sbjct: 25 ENGKLTLL-DLVESLGEYLTSEDPIIRAKAVQLLSEV 60
>gnl|CDD|218128 pfam04523, Herpes_U30, Herpes virus tegument protein U30. This
family is named after the human herpesvirus protein, but
has been characterized in cytomegalovirus as UL47.
Cytomegalovirus UL47 is a component of the tegument,
which is a protein layer surrounding the viral capsid.
UL47 co-precipitates with UL48 and UL69 tegument
proteins, and the major capsid protein UL86. A
UL47-containing complex is thought to be involved in the
release of viral DNA from the disassembling virus
particle.
Length = 883
Score = 31.1 bits (71), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 283 RYLASL-VGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVV 325
+Y L VG +YD +V F + IKH VI E+ A++
Sbjct: 502 KYCELLQVGDTAYDS----PIVTSPFFAEEFIKHVVIPELSAIL 541
>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 312
Score = 30.8 bits (70), Expect = 1.1
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDS---FEKGLARGLGQIKTGLDGAVKRKKMS 277
KTVAV+GAG +G + G ++ LAR LG + D +
Sbjct: 131 KTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEA----- 185
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
++R R L AD+VIEAV
Sbjct: 186 IVERVREL---------TGGAGADVVIEAV 206
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 30.5 bits (69), Expect = 1.2
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALA RI + LGL PG G T L + L G A+ A
Sbjct: 114 ALAADVRIAGPKALFDARFQK--LGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAA 171
Query: 71 KKMGIVDQLVE 81
+ G+ + +
Sbjct: 172 VRHGLALMVAD 182
>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. Enzymes
in this family catalyze the NAD-dependent
alcohol-to-acid oxidation of nucleotide-linked sugars.
Examples include UDP-glucose 6-dehydrogenase (1.1.1.22)
, GDP-mannose 6-dehydrogenase (1.1.1.132) ,
UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136),
UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase.
These enzymes are most often involved in the
biosynthesis of polysaccharides and are often found in
operons devoted to that purpose. All of these enzymes
contain three Pfam domains, pfam03721, pfam00984, and
pfam03720 for the N-terminal, central, and C-terminal
regions respectively.
Length = 409
Score = 30.7 bits (70), Expect = 1.4
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK---GLARGLGQIK-TGLDGAVKRKKM 276
+AV+G G +G +A + D G++ D ++ L +G I GLD + +
Sbjct: 1 MKIAVIGLGYVGLPLAALLADLGHDVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAK--- 57
Query: 277 SALDRDRYLASLVGTLSY-DPFKNADMVIEAV 307
AL R L T Y + ++AD++I V
Sbjct: 58 -ALKAGR----LRATTDYEEAIRDADVIIICV 84
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 30.0 bits (68), Expect = 1.4
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
V V+G G++G A+ +G + + E+G
Sbjct: 2 VVVIGGGIVGLSTAYELARRGLSVTL---LERG 31
>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 30.0 bits (68), Expect = 1.6
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 26/114 (22%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
V ++G GLMG +A + G + G D + L
Sbjct: 4 MKVGIVGLGLMGGSLARALKEAGLVVRI----------------IGRDR-----SAATLK 42
Query: 281 RDRYL---ASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV 331
L L + AD+VI AV I +V+KE+ + +V
Sbjct: 43 AALELGVIDELTVAGLAEAAAEADLVIVAV--PIEATEEVLKELAPHLKKGAIV 94
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate
dehydrogenase proteins. Members of this subfamily have
an LDH-like structure and an MDH enzymatic activity.
Some members, like MJ0490 from Methanococcus jannaschii,
exhibit both MDH and LDH activities. Tetrameric MDHs,
including those from phototrophic bacteria, are more
similar to LDHs than to other MDHs. LDH catalyzes the
last step of glycolysis in which pyruvate is converted
to L-lactate. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate. The
LDH-like MDHs are part of the NAD(P)-binding Rossmann
fold superfamily, which includes a wide variety of
protein families including the NAD(P)-binding domains of
alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 300
Score = 30.1 bits (69), Expect = 1.6
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRD 282
++++GAG +GA +A + K +V +GL +G LD + + L D
Sbjct: 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGK-----ALDIS---QAAPILGSD 52
Query: 283 RYLASLVGTLSYDPFKNADMVI 304
+ GT Y+ +D+V+
Sbjct: 53 ---TKVTGTNDYEDIAGSDVVV 71
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 30.3 bits (69), Expect = 1.6
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYN--TIVKDSFEKG--LARGLGQIKTGLD 268
K V V+GAG MG A KG TI ++E+ LA+ LG LD
Sbjct: 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLD 230
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 29.9 bits (68), Expect = 1.7
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 56 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
++M LTG+ + A A++ G+V+++V + L+ A+ +A+
Sbjct: 165 MEMLLTGEFIDAATAREWGLVNRVVPA-------------DALDAAVARLAAVIAA 207
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 29.7 bits (67), Expect = 1.9
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 18 IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT---ALPNVLDMTLTGKTLKADKAKKMG 74
IV+ D+ L E++ GL+P LP L MTL + + A +A G
Sbjct: 120 IVIADETAPFSLSELLFGLIPAC----VLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWG 175
Query: 75 IVD 77
+VD
Sbjct: 176 LVD 178
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 29.8 bits (67), Expect = 1.9
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 26/105 (24%)
Query: 10 VALACHYRIVVKD---KKTGL--GLPEVMLGL---LPGAGGTQRLPKLTALPNVLDMTLT 61
+ALA R+ + G+ GL LGL LP A G+ R ++ LT
Sbjct: 127 LALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSR---------AFEIMLT 177
Query: 62 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 106
G+ + A++A+++G+V + V P+E+ ++ +A A
Sbjct: 178 GRDVDAEEAERIGLVSRQV---------PDEQLLDTCYAIAARMA 213
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 29.0 bits (66), Expect = 2.5
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
+ +G G+MG+ +A + GY V +
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYN 30
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 29.5 bits (67), Expect = 2.5
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
+A +G G+MG+ +A + G+ V +
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYN 30
>gnl|CDD|214537 smart00145, PI3Ka, Phosphoinositide 3-kinase family, accessory
domain (PIK domain). PIK domain is conserved in all PI3
and PI4-kinases. Its role is unclear but it has been
suggested to be involved in substrate presentation.
Length = 184
Score = 28.8 bits (65), Expect = 2.8
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 270 AVKR-KKMS---ALDRDRYLASLVGTLSYDPFKNADMV---IEAVFEDINIKHQVI 318
AVKR + S L YL LV L Y+P+ ++ + +E + + H
Sbjct: 96 AVKRLESASDEELLL---YLLQLVQALKYEPYLDSALARFLLERALANQRLGHFFY 148
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 29.5 bits (67), Expect = 3.1
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK-----GLARG 259
+A++G G+ G A+ +G+ V FE GLA
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHEVTV---FEADDQLGGLAAS 40
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 28.8 bits (65), Expect = 3.8
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
P TV VLGAG +G A + G IV D ++ L + G D + K+
Sbjct: 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK---ELGADHVIDYKE-- 187
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
L L AD+VI+AV
Sbjct: 188 --------EDLEEELRLTGGGGADVVIDAV 209
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 28.8 bits (65), Expect = 3.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 224 AVLGAGLMGAGIAHVTVDKGYNTIV 248
V+GAG G A +D G ++
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVI 25
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 28.0 bits (63), Expect = 4.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIV 248
K V +LGAG +A+ + G IV
Sbjct: 18 KGKKVLILGAGGAARAVAYALAELGAAKIV 47
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 28.6 bits (65), Expect = 4.7
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 15 HYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MTLTGKTLKADKAKK 72
+RIV + +T + +PE +G P GGT L + P L + LTG + A A
Sbjct: 123 SHRIVTE--RTKMAMPETGIGFFPDVGGTYFLSR---APGALGTYLALTGARISAADALY 177
Query: 73 MGIVDQLVE 81
G+ D V
Sbjct: 178 AGLADHFVP 186
>gnl|CDD|193486 cd04081, CBM35_galactosidase-like, Carbohydrate Binding Module
family 35 (CBM35); appended mainly to enzymes that bind
alpha-D-galactose (CBM35-Gal), including glycoside
hydrolase (GH) families GH31 and GH43. This family
includes carbohydrate binding module family 35 (CBM35);
these are non-catalytic carbohydrate binding domains
that are appended mainly to enzymes that bind
alpha-D-galactose (CBM35-Gal), including glycoside
hydrolase (GH) families GH31 and GH43. Examples of
proteins which contain CBM35s belonging to this family
includes the CBM35 of an exo-beta-1,3-galactanase from
Phanerochaete chrysosporium 9(Pc1,3Gal43A) which is
appended to a GH43 domain, and the CBM6 of domain of
two bifunctional proteins with
beta-L-arabinopyranosidase/alpha-D-galactopyranosidase
activities from Fusarium oxysporum 12S, Foap1 and Foap2
(Fo/AP1 and Fo/AP2), that are appended to GH31 domains.
CBM35s are unique in that they display conserved
specificity through extensive sequence similarity but
divergent function through their appended catalytic
modules. They are known to bind alpha-D-galactose (Gal),
mannan (Man), xylan, glucuronic acid (GlcA), a
beta-polymer of mannose, and possibly glucans, forming
four subfamilies based on general ligand specificities
(galacto, urono, manno, and gluco configurations). Some
CBM35s bind their ligands in a calcium-dependent manner.
In contrast to most CBMs that are generally rigid
proteins, CBM35 undergoes significant conformational
change upon ligand binding. GH43 includes
beta-xylosidases and beta-xylanases, using
aryl-glycosides as substrates, while family GH31
includes alpha-glucosidases and alpha-xylosidases that
cleave a terminal carbohydrate moiety from substrates
that vary considerably in size, mostly accommodating
alpha-D-glucose and alpha-D-xylose.
Length = 123
Score = 27.6 bits (62), Expect = 4.8
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 219 PVKTVAVLGAGLMGAGI--AHVTVDKGYNTIV 248
VA G G G V + G NTI
Sbjct: 75 APTRVAFPGTGGWTWGTSTVPVDLKAGSNTIR 106
>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase.
Length = 1378
Score = 29.0 bits (65), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 213 LGKPQT----PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLAR 258
L K T PVK + +G G MG G+A + ++ D ++ L R
Sbjct: 313 LAKQITMQAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVR 362
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed.
Length = 307
Score = 28.6 bits (65), Expect = 5.1
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV----KDSFEKGLARGLGQIKTGLDGAVKRKKM 276
K ++++GAG +GA +AH+ K +V + +G A + +
Sbjct: 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAE-------------A 49
Query: 277 SALDRDRYLASLVGTLSYDPFKNADMVI 304
+ + + + + GT Y+ +D+V+
Sbjct: 50 APV--EGFDTKITGTNDYEDIAGSDVVV 75
>gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase.
Length = 442
Score = 28.8 bits (64), Expect = 5.3
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 175 PSAGYEAEAEGFSQLAMTPQSKG-LMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGA 233
P +GY + A+ Q K L L R K LG + ++ V GAG +G+
Sbjct: 74 PLSGYGIRPDESYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKGLRVVVTGGAGFVGS 133
Query: 234 GIAHVTVDKGYNTIVKDSFEKG 255
+ + +G + IV D+F G
Sbjct: 134 HLVDRLMARGDSVIVVDNFFTG 155
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 28.6 bits (64), Expect = 5.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261
++A++GAG+ G A+ + G V FEKG RG+G
Sbjct: 3 SIAIVGAGIAGLAAAYALREAGREVTV---FEKG--RGVG 37
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 28.4 bits (64), Expect = 5.4
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGL-LPGAG---GTQRLPKLTALPNVLDMTLTGK 63
A + L+ YRI V +GL EV +G+ +P A RL +A + +
Sbjct: 107 AFLLLSADYRIGV-HGPFKIGLNEVAIGMTMPHAAIELARDRLTP-SAFQRA---VINAE 161
Query: 64 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 110
++A G +D++V P E L A A +LA
Sbjct: 162 MFDPEEAVAAGFLDEVVPP-------------EQLLARAQAAARELA 195
>gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 329
Score = 28.7 bits (65), Expect = 5.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV 248
+AV+GAG G +A V G+ +
Sbjct: 2 MKIAVIGAGSWGTALAKVLARNGHEVRL 29
>gnl|CDD|237945 PRK15329, PRK15329, chaperone protein SicP; Provisional.
Length = 138
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 290 GTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVV 325
GTL+Y A ++I A+ + N H+++ ++EA V
Sbjct: 80 GTLAYIDAAEALLLIHAITDLTNGYHEIVDQLEAFV 115
>gnl|CDD|219361 pfam07277, SapC, SapC. This family contains a number of
bacterial SapC proteins approximately 250 residues
long. In Campylobacter fetus, SapC forms part of a
paracrystalline surface layer (S-layer) that confers
serum resistance.
Length = 220
Score = 27.5 bits (62), Expect = 9.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 10 VALACHYRIV-VKDKKTGLGLPEVMLGLLPG 39
A Y IV VK+ +TG P +LGL PG
Sbjct: 34 AQAAAEYPIVFVKNAETGQFQPVALLGLEPG 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,340,693
Number of extensions: 1821301
Number of successful extensions: 1856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1811
Number of HSP's successfully gapped: 130
Length of query: 359
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 261
Effective length of database: 6,590,910
Effective search space: 1720227510
Effective search space used: 1720227510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)