RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9056
(359 letters)
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 416 bits (1072), Expect = e-141
Identities = 117/346 (33%), Positives = 176/346 (50%), Gaps = 21/346 (6%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ LA +R++ K +GLPEV LG+ PG GGT RLP+L + N ++ +GK +A+
Sbjct: 121 MCLAADFRVMADSAK--IGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAED 178
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
A K+ VD +V + L A++ + SG+L + +K+
Sbjct: 179 ALKVSAVDAVVTA-------------DKLGAAALDLIKRAISGELDYKAKRQPKLEKLKL 225
Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
A++ + F AK V +G YPAP++ + ++ G E EA GF++L
Sbjct: 226 NAIE----QMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKL 281
Query: 190 AMTPQSKGLMGLFRAQTECKKN--RLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTI 247
A T S L+GLF E KK K VK AVLGAG+MG GIA+ + KG +
Sbjct: 282 AKTSASNCLIGLFLNDQELKKKAKVYDKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPIL 341
Query: 248 VKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
+KD E G+ +GL + L G V + +M+ L + TLSY F N D+V+EAV
Sbjct: 342 MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAV 401
Query: 308 FEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
E+ +K V+ E+E V ++A+NTS I I+ +A A KRP+
Sbjct: 402 VENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENF 447
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 398 bits (1025), Expect = e-134
Identities = 119/348 (34%), Positives = 180/348 (51%), Gaps = 26/348 (7%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+A+ACH RI LGLPE+ LG++PG GGTQRLP+L L L+M LT K +KA++
Sbjct: 120 LAMACHARISAP--AAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEE 177
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
+G++D +V P L A A + + + K+
Sbjct: 178 GHSLGLIDAVVPP-------------AELVTTARRWALDIVGRRKPWVSSVSKTD-KLPP 223
Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
+ E AK + +K + PL LD + GI GP AG E EAE SQ+
Sbjct: 224 LGEAREI-----LTFAKAQTLKRAPN-MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQV 277
Query: 190 AMTPQSKGLMGLFRAQTECKK----NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYN 245
+KGL+ +F +Q K G +K VA++G GLMG+GIA + Y
Sbjct: 278 VKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYP 337
Query: 246 TIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIE 305
I+K+ EK L G+G++K L V++ MS ++ ++ L G+L Y+ F++ DMVIE
Sbjct: 338 VILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIE 397
Query: 306 AVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
AV E+I++K Q+ ++E P HC++A+NTS I + KI +K D++
Sbjct: 398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRI 445
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 390 bits (1003), Expect = e-130
Identities = 104/351 (29%), Positives = 161/351 (45%), Gaps = 34/351 (9%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+AL CHYRI + K +GLPEV LG+LPGA GTQ LP++ +P LD+ +GK L AD+
Sbjct: 124 LALGCHYRIA--NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADE 181
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
A ++GI+D +V+ E A+ A ++ ++ R +
Sbjct: 182 ALRLGILDAVVKS--------------DPVEEAIKFAQKIIDKPIEPRRIF--------N 219
Query: 130 VALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQL 189
+ + +F +A KV K G AP + ++ ++ G + E + F L
Sbjct: 220 KPVPSLPNMDSVFAEAIAKVRKQYPG-VLAPETCVRSIQASVKHPYEVGIKEEEKLFMYL 278
Query: 190 AMTPQSKGLMGLFRAQTECKK-------NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDK 242
+ Q+K L F A+ K + PV +V VLG G MG GIA
Sbjct: 279 RASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARV 338
Query: 243 GYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADM 302
G + + +S K L I L+ R + + L + S D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG--QASAKPKLRFSSSTKELSTVDL 396
Query: 303 VIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
V+EAVFED+N+K +V E+ A+ P + TNTSA+ + IA+++ RP V
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 447
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 217 bits (554), Expect = 7e-67
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 9/169 (5%)
Query: 192 TPQSKGLMGLFRAQTECKK-------NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGY 244
+ Q+K L F A+ K + PV +V VLG G MG GIA G
Sbjct: 2 SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61
Query: 245 NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVI 304
+ + +S K L I L+ R + + L + S D+V+
Sbjct: 62 SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG--QASAKPKLRFSSSTKELSTVDLVV 119
Query: 305 EAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
EAVFED+N+K +V E+ A+ P + TNTSA+ + IA+++ RP V
Sbjct: 120 EAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLV 168
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 204 bits (520), Expect = 6e-62
Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 15/189 (7%)
Query: 174 GPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK---------NRLGKPQTPVKTVA 224
G + + G + Q + + V +VA
Sbjct: 2 GHHHHHHHHSTGE---NLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVA 58
Query: 225 VLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRY 284
++G G MG +A G T + E+ + L + K+++ ++
Sbjct: 59 IIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEKI 115
Query: 285 LASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIA 344
A+L T + N D+++E+V ED+ +K ++ +E + C+ TNTS++ + +I+
Sbjct: 116 NANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEIS 175
Query: 345 AASKRPDKV 353
+ + P +
Sbjct: 176 SVLRDPSNL 184
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 165 bits (420), Expect = 4e-47
Identities = 51/134 (38%), Positives = 75/134 (55%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
V+TVAV+G+G MGAGIA V G+ ++ D + L R + I L+ V R K++A
Sbjct: 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIP 339
+R L L+ AD+VIEA E + +K + ++ V PP ++ TNTS+I
Sbjct: 65 TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 340 ITKIAAASKRPDKV 353
IT IAA K P++V
Sbjct: 125 ITAIAAEIKNPERV 138
Score = 42.7 bits (101), Expect = 1e-04
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 294 YDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDKV 353
+ + A + +EA D +V K+ + V V+ T +A RP V
Sbjct: 285 WRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVV 343
Query: 354 RNM 356
+
Sbjct: 344 IDK 346
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 156 bits (396), Expect = 3e-45
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRK---- 274
VK V V+G GLMGAGIA V G+ ++ D E LA+ I+ L K+K
Sbjct: 14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAEN 73
Query: 275 -KMSALDRDRYLASLVGTLSYDPF-KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVA 332
K ++ L+++ + + D+V+EA+ E++ +K+++ K ++ H + A
Sbjct: 74 PKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFA 133
Query: 333 TNTSAIPITKIAAASKRPDKV 353
+NTS++ IT IA A+ R D+
Sbjct: 134 SNTSSLQITSIANATTRQDRF 154
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 130 bits (330), Expect = 9e-36
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 20/143 (13%)
Query: 214 GKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKR 273
V V+GAGLMG GIA + +++D EK L QI L
Sbjct: 6 IHHHHHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEEL------ 58
Query: 274 KKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT 333
L+ + T + + K+ D+V+EAVFED+N K +V++E+E + + + +
Sbjct: 59 -----------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCS 105
Query: 334 NTSAIPITKIAAASKRPDKVRNM 356
NTS I + IA P + +
Sbjct: 106 NTSVISVDDIAERLDSPSRFLGV 128
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 129 bits (326), Expect = 6e-35
Identities = 20/141 (14%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
V ++G+GL+G A + G+ + D + + L I+ + + +
Sbjct: 4 PAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLK 63
Query: 278 -ALDRDRYLASLVGTLSY-DPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNT 335
+L + L+ + + + + + E V E++++K ++ +++++V V+++++
Sbjct: 64 GSLSAEEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSS 123
Query: 336 SAIPITKIAAASKRPDKVRNM 356
S + +K+ +
Sbjct: 124 SCLLPSKLFTGLAHVKQCIVA 144
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 119 bits (299), Expect = 5e-30
Identities = 39/204 (19%), Positives = 78/204 (38%), Gaps = 13/204 (6%)
Query: 10 VALACHYRIVVKDKKTGLGLPEV-MLGLLPGAGGTQRLPKLTALP--NVLDMTLTGKTLK 66
+ALAC +V D+ + + LPEV +LG+LPG GG R+ + + ++
Sbjct: 147 LALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVR 206
Query: 67 ADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDK 126
++AK +VD++V+P N ++ E+A + + + + R +
Sbjct: 207 GERAKAWRLVDEVVKP-----NQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTD--- 258
Query: 127 VLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGF 186
+ L ++ + I + P I +V G P + E +
Sbjct: 259 -REDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWP-LKFAREFDDA 316
Query: 187 SQLAMTPQSKGLMGLFRAQTECKK 210
T + +FR + + +
Sbjct: 317 ILSMRTNELAVGTWVFRTEGDARH 340
Score = 45.8 bits (108), Expect = 1e-05
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 6 SLATVALACHYRIVV-----KDKKTGLGLPEVMLGLLPGAGGTQRLP-KLTALPNVLDM- 58
+ A +A A + +D++ + L EV GL P RL + LD
Sbjct: 391 TFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAV 450
Query: 59 -TLTGKTLKADKAKKMGIVDQLVEPL 83
+ G+ +K +A+++G+V + +
Sbjct: 451 RSRIGQAIKPVEAERLGLVTASPDDI 476
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 93.4 bits (233), Expect = 3e-22
Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 17/130 (13%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
VAL C YRI+ + + +GL E LG++ L G +
Sbjct: 115 VALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAE 174
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PD 125
A ++GIVDQ+V E ++ A++ +Q + TK M+
Sbjct: 175 ALQVGIVDQVVPE-------------EQVQSTALSAIAQWMAIPDHARQLTKAMMRKATA 221
Query: 126 KVLDVALKFE 135
L +
Sbjct: 222 SRLVTQRDAD 231
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 91.9 bits (229), Expect = 2e-21
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 15/126 (11%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A + GLG E ++G++PG GGTQ L L++ LT A+ A
Sbjct: 125 VAAADMAFAAAET-AGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETA 183
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMIPDKVLD 129
G +++ + + L+E A +A+ I K +P L
Sbjct: 184 ASYGWINRALPA-------------DELDEYVDRVARNIAALPDGVIEAAKRSLPADDLK 230
Query: 130 VALKFE 135
L E
Sbjct: 231 EGLLGE 236
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 90.6 bits (226), Expect = 3e-21
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 10/126 (7%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
+ALAC R + D+ +GLPEV LG+L G GGTQRL +L LDM +TG+T+ +
Sbjct: 119 MALACDLRFMG-DEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQE 177
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLD 129
A ++G+V+++ ERT EY ++A + +++ KL I K + L+
Sbjct: 178 ALEIGLVNRVFPQ-----AETRERTREYARKLANSATYAVSNIKLAIMNGK----EMPLN 228
Query: 130 VALKFE 135
VA+++E
Sbjct: 229 VAIRYE 234
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 90.9 bits (226), Expect = 5e-21
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 18/150 (12%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
AL+CH I + +GLPEV+ L PG G + + + + L G A++
Sbjct: 158 AALSCHTIIAEEGVM--MGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQ 215
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA-VNTASQLASGKLK--INRTKPMIPDK 126
MG+VD++V P + + +E+V + + A ++ T +
Sbjct: 216 LLGMGLVDRVV---------PRGQGVAAVEQVIRESKRTPHAWAAMQQVREMTTAV---- 262
Query: 127 VLDVALKFEFVRNQIFGKAKEKVMKMSGGL 156
L+ ++ + + EK ++ L
Sbjct: 263 PLEEMMRITEIWVDTAMQLGEKSLRTMDRL 292
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 88.0 bits (219), Expect = 1e-20
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 10/125 (8%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
L+ YRI V + +GL EV +G+ G + + + + A
Sbjct: 113 LLSADYRIGVAGPFS-IGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGA 171
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
G +D++V + + ++ + KLK+ + LD
Sbjct: 172 MAAGFLDKVVSV-----EELQGAALAVAAQLKKINMNAHKKTKLKVRKG----LLDTLDA 222
Query: 131 ALKFE 135
A++ +
Sbjct: 223 AIEQD 227
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 89.2 bits (222), Expect = 2e-20
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 17/128 (13%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
LAC R ++ LG PEV +G PGAG Q L +L L+ LT AD A
Sbjct: 122 LLACDMRFASREN-AILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLA 180
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI--PDKV 127
++ G V++ V L+E A++++ + + K I
Sbjct: 181 ERYGWVNRAVPD-------------AELDEFVAGIAARMSGFPRDALIAAKSAINAISLP 227
Query: 128 LDVALKFE 135
++ +
Sbjct: 228 APAEVRAD 235
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 87.7 bits (218), Expect = 2e-20
Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 27/133 (20%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
+ +R+ + EV +G+ + L KT + A
Sbjct: 114 LCSGDHRVAAHAYN--VQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETA 171
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KLKINRTKPM 122
G +D++ P E + A A + A KL+
Sbjct: 172 LAAGFIDEISLP-------------EVVLSRAEEAAREFAGLNQQAHNATKLRARAE--- 215
Query: 123 IPDKVLDVALKFE 135
K + +
Sbjct: 216 -ALKAIRAGIDGI 227
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 88.0 bits (219), Expect = 3e-20
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALAC R+ K +GL E L ++PG GGTQRLP+ + ++ + + L +A
Sbjct: 124 ALACDIRVAASSAK--MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEA 181
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
K +G++ ++ + + + A++ A +
Sbjct: 182 KAVGLISHVL---------EQNQEGDAAYRKALDLAREFLP 213
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 86.4 bits (215), Expect = 1e-19
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A++CH R + K LGLPE+ LGL+PG GTQRLP+ +M LT + +A
Sbjct: 117 AMSCHMRFATESAK--LGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEA 174
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKINRTKPMIPDK 126
K G+V+ + EE ++ +VA A + + + TK
Sbjct: 175 LKWGLVNGVF---------AEETFLDDTLKVAKQIAGKSPATARAVLELLQTTK----SS 221
Query: 127 VLDVALKFE 135
++ E
Sbjct: 222 HYYEGVQRE 230
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 86.1 bits (214), Expect = 2e-19
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 19/129 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A A H R+ LPE G+ G GG+ RLP+L + + DM LTG+ A +
Sbjct: 125 ACAAHIRVAEASAY--YALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEG 182
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMIP---DK 126
G L+E + A+ +++A L +P +
Sbjct: 183 VVHGFSQYLIEN-------------GSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEA 229
Query: 127 VLDVALKFE 135
L E
Sbjct: 230 NPQTGLLME 238
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 85.3 bits (212), Expect = 2e-19
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 20/137 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
++ I + V LG+ G L + V ++ T + A +A
Sbjct: 115 IMSSDLIIAASTST--FSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRA 172
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PDK 126
+GI++ +VE E LE+ + A ++ L I K + +
Sbjct: 173 LAVGILNHVVEV-------------EELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEA 219
Query: 127 VLDVALKFEFVRNQIFG 143
+ +FE +
Sbjct: 220 HTMNSDEFE-RIQGMRR 235
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 84.9 bits (211), Expect = 3e-19
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AL+C + + G PEV LG++PGAGGTQRL KL L+ TG + A +A
Sbjct: 114 ALSCDLIVASSAAE--FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEA 171
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
+++GIV+++V P E L E + A +LA
Sbjct: 172 EQLGIVNRVVSP-------------ELLMEETMRLAGRLAE 199
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 84.1 bits (209), Expect = 7e-19
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
+LAC +RI + LGL E L ++PGAGGTQRLP+L + ++ TG+ + A +A
Sbjct: 121 SLACDFRIAAESAS--LGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEA 178
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
K+ G+V+ +V LEE A+ A ++AS
Sbjct: 179 KEYGLVEFVVPV-------------HLLEEKAIEIAEKIAS 206
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 84.2 bits (209), Expect = 8e-19
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALA +R+ + K G E++ GL+PG GG RL ++ ++ +G+ A++A
Sbjct: 134 ALAADWRVSGDNVK--FGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEA 191
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+G++D +V P + + + AV A +
Sbjct: 192 LALGLIDDMVAP-------------DDVYDSAVAWARRYLEC 220
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 83.7 bits (208), Expect = 8e-19
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A+ C + + G PE++LG +PGAGGTQRL + ++M LTG + A A
Sbjct: 116 AMMCDIIYAGEKAQ--FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDA 173
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKINRTKPMIPDK 126
K+ G+V ++ P E +E + A A+ +A K +N +
Sbjct: 174 KQAGLVSKIF---------PVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAF----EM 220
Query: 127 VLDVALKFE 135
L K E
Sbjct: 221 TLTEGNKLE 229
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 83.0 bits (206), Expect = 2e-18
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A+ C I K G PE+ LG+LPG GG+QRL + +D+ LTG+T+ A +A
Sbjct: 134 AMMCDVLIAADTAK--FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 191
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
++ G+V ++V + L A TA+ ++
Sbjct: 192 ERSGLVSRVVPA-------------DDLLTEARATATTISQ 219
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 82.2 bits (204), Expect = 3e-18
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 17/125 (13%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A+ C R+V D P GL +RL L M L+ + L A+ A
Sbjct: 126 AMQCDLRVVAPDAF--FQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIA 183
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
G+ +++ + E+A + K +N ++
Sbjct: 184 LHTGMANRIG---------TLADAQAWAAEIARLAPLAIQHAKRVLNDDGA------IEE 228
Query: 131 ALKFE 135
A
Sbjct: 229 AWPAH 233
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 82.2 bits (204), Expect = 3e-18
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 19/129 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A+ C I + G PE+ LG+LPG GGTQRL + +D+ LTG++L A++A
Sbjct: 119 AMLCDLVIAADTAR--FGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEA 176
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKINRTKPMIPDK 126
+++G+V ++V P ++ VA A + K IN ++
Sbjct: 177 ERVGLVSRIV---------PAADLLDEALAVAQRIARMSRPAGRAVKDAINEAF----ER 223
Query: 127 VLDVALKFE 135
L +++E
Sbjct: 224 PLSAGMRYE 232
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 79.2 bits (196), Expect = 4e-17
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 22/136 (16%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
+ + + + P G++PG G P + LTG+ L A
Sbjct: 123 PEIPVMSDIVLAAESATFQ-DGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDA 181
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KLKINRT 119
A G V++++ + L A A +A + + R
Sbjct: 182 RTALDYGAVNEVLSE-------------QELLPRAWELARGIAEKPLLARRYARKVLTRQ 228
Query: 120 KPMIPDKVLDVALKFE 135
+ + L + L E
Sbjct: 229 LRRVMEADLSLGLAHE 244
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 78.8 bits (195), Expect = 5e-17
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AL C I ++ K +GL+P G + RLP+ + M+LTG L A A
Sbjct: 111 ALYCDILIASENAK--FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDA 168
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA--SQLASGKLK--INRTKPMIPDK 126
+ G+V ++V + + VA + +Q A L +R +
Sbjct: 169 LRAGLVTEVV---------AHDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDAL---- 215
Query: 127 VLDVALKFEFVRNQIFGKA 145
AL E + + ++
Sbjct: 216 QTGGALWAEAEAARQWMRS 234
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 78.8 bits (195), Expect = 6e-17
Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 27/141 (19%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
+AC I + GL E+ G+ PG ++ + L +TGKT KA
Sbjct: 125 LVACDLAICADEAT--FGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKA 182
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KLKINRTKPM 122
+MG+V++ V L EV + A L K R +
Sbjct: 183 AEMGLVNESVPL-------------AQLREVTIELARNLLEKNPVVLRAAKHGFKRCR-- 227
Query: 123 IPDKVLDVALKFEFVRNQIFG 143
+ + + + +
Sbjct: 228 --ELTWEQNEDYLYAKLDQSR 246
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 78.3 bits (194), Expect = 8e-17
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALA I + EV G+ P G T R P+ N + LT T A +A
Sbjct: 121 ALAADIVIADETAT--FAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEA 178
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
++GIV ++V + A+ A +A
Sbjct: 179 HRIGIVQEIVPV-------------GEHVDTAIAIAQTIAR 206
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 78.0 bits (193), Expect = 8e-17
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
L + + ++ + G P + L + +M TG+ + +
Sbjct: 109 GLYADFVVFSQESV--YATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKEL 166
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+ GI +V + + A ++A
Sbjct: 167 AERGIPFPVVSR-------------QDVLNYAQQLGQKIAKS 195
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 78.4 bits (194), Expect = 8e-17
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
T+AL RI+ ++ + +P+V G+ P A LP+L ++ LTG + A
Sbjct: 114 MTLALHADIRILAEEGR--YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSA 171
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 106
+A + G+ ++ + + ++A N A
Sbjct: 172 QRAVETGLANRCLPA-----GKVLGAALRMAHDIATNVA 205
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 78.0 bits (193), Expect = 9e-17
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
L + + + EV+ G+ P G T R P+ + + LTG AD+A
Sbjct: 124 MLNADIAVAARGTR--FAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEA 181
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
+M ++ ++VEP G L R +EY E +A + + + + D+ D
Sbjct: 182 LRMRLLTEVVEP-GEEL----ARALEYAERIARAAPLAVRAALQSAFQGR----DEGDDA 232
Query: 131 ALKFE 135
AL
Sbjct: 233 ALSRV 237
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 78.0 bits (193), Expect = 1e-16
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
+ LAC RI ++ K +G+ P G + LP++ +++ L GK +
Sbjct: 117 FNMMLACDRRIALRRAK--FLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTS 174
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
++A ++G++ ++ E + L+E N ++ G
Sbjct: 175 EEALRLGLIQEICENK------------QELQERVKNYLKAVSEG 207
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 76.9 bits (190), Expect = 3e-16
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 14/103 (13%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
L + ++ +P + G++PG G P L T + L A +
Sbjct: 134 YILTTDIILASENTVFQ-DMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQ 192
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
A ++ +V +++ L E A A LA
Sbjct: 193 AYELNVVHEVLPQ-------------SKLMERAWEIARTLAKQ 222
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 76.8 bits (190), Expect = 3e-16
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
R+ + GLPEV GL+PGAG RL + ++M LTG+ L A +A
Sbjct: 121 LQQTDIRVSDEHAT--FGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEA 178
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
G+V +V + A + A ++
Sbjct: 179 YHFGLVGHVVPA-------------GTALDKARSLADRIVR 206
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 76.0 bits (188), Expect = 5e-16
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
AT+ + + L P LG+ P A + LP+L N + ++ + + A
Sbjct: 115 ATILGYADLAFMSSTAR--LKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDA 172
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
++A +MG+V ++ P E L A A LA+
Sbjct: 173 EEALRMGLVWRICSP-------------EELLPEARRHAEILAAK 204
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 76.1 bits (188), Expect = 5e-16
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
T+ L +P V LGL P G +Q L K ++ T K A
Sbjct: 115 VTILLQADLVFADNTAL--FQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNA 172
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+ A + G+V+++VE A TA L +
Sbjct: 173 ETALQAGLVNEIVED---------------AYATAQATAQHLTAL 202
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 76.0 bits (188), Expect = 6e-16
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALA + + + GLPEV GL+ AGG R+ + + + LTG+ L A A
Sbjct: 120 ALASDLVVADERAQ--FGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAA 177
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
+ G+++++VE + + A+ AS +
Sbjct: 178 RDWGLINEVVEA-------------GSVLDAALALASAITV 205
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 75.7 bits (187), Expect = 6e-16
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AL C R+V +D LG+ G+ GGT RLP+L +D+ LTG+ + A++A
Sbjct: 120 ALWCDLRVVEEDAV--LGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEA 177
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
+G+V+++V G E E+A + + + M +
Sbjct: 178 LDIGLVNRVVAR-GQAR----EAAETLAAEIAAFPQQCVRADRDSAIAQWGM----AEEA 228
Query: 131 ALKFEF 136
AL EF
Sbjct: 229 ALDNEF 234
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 76.1 bits (188), Expect = 6e-16
Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 13/128 (10%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
++ + ++ L P V +GL+ GG P +L + LTG + A
Sbjct: 138 CSLVALSDIVYIAENAY--LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISA 195
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKV 127
+A ++G+ + + + + +++ + S K +N ++
Sbjct: 196 QRAVELGLANHVADDP-------VAEAIACAKKILELPQQAVESTKRVLNIH----LERA 244
Query: 128 LDVALKFE 135
+ +L +
Sbjct: 245 VLASLDYA 252
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 75.3 bits (186), Expect = 9e-16
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALA ++V + + G+PEV GL+ G GG RLP+ +++ LTG L A++A
Sbjct: 121 ALATD--LIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERA 178
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
+G+V+ L EP + A+ A ++ +
Sbjct: 179 HALGMVNVLAEP-------------GAALDAAIALAEKITA 206
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 75.3 bits (186), Expect = 9e-16
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
A++ C + P G P T PK+ + +M L+G+ L A
Sbjct: 117 ASILPLCDVVWANEKAW--FQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTA 174
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+A G+V Q+ P + + +LAS
Sbjct: 175 QEACGKGLVSQVFWP-------------GTFTQEVMVRIKELASC 206
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 75.3 bits (186), Expect = 9e-16
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN-VLDMTLTGKTLKADK 69
AC R +D + EV +GL G QRLPK+ + V ++T T + + AD+
Sbjct: 126 ISACDIRYCTQDAF--FQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE 183
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PD 125
A G+V ++ + + A A+ ++S + + +K + D
Sbjct: 184 ALDSGLVSRVFP------------DKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRD 231
Query: 126 KVLDVALKFE 135
+D +L +
Sbjct: 232 HSVDESLDYM 241
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 75.3 bits (186), Expect = 1e-15
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
VAL + K + LG+ G P L + LT +TL
Sbjct: 123 LVVALLADISVASATAK--IIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSG 180
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
++A+++G+V V+ + + A A LA G
Sbjct: 181 EEAERIGLVSTCVDD-------------DEVLPTATRLAENLAQG 212
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 74.8 bits (185), Expect = 1e-15
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
L+C +VV + G+PEV GL+ GAGG RLP +++ LTG++ A+ A
Sbjct: 112 VLSCD--LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDA 169
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
K G +++LV+ + A+ A+++ +
Sbjct: 170 AKYGFINRLVDD-------------GQALDTALELAAKITA 197
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 74.5 bits (184), Expect = 1e-15
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AL R++ +PE+ G+ G L + ++ ++L A +
Sbjct: 113 ALMFDQRLMASTAN--FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRC 169
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+V+Q+VE L + A+ A +AS
Sbjct: 170 VDYRLVNQVVES-------------SALLDAAITQAHVMASY 198
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 74.5 bits (184), Expect = 1e-15
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
++ALAC +R++ + + +GL+P AG LP+L L++ + G+ + A
Sbjct: 110 MSLALACDFRLLSEKAS--FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTA 167
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
++A +G+ +++ EE A +L++
Sbjct: 168 EEAAALGLATKVIPL-------------SDWEEEVKQFAERLSAM 199
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 74.9 bits (185), Expect = 2e-15
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
R+ + K G+ E L P G RL + D+ LTG+ + A +A
Sbjct: 134 LQGTDIRVAAESAK--FGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEA 191
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
K+MG+V +V A+ A +A+
Sbjct: 192 KEMGLVGHVVPD-------------GQALTKALEIAEIIAA 219
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 74.5 bits (184), Expect = 2e-15
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
+ALA +V K + L + LG+ G P L + L + L
Sbjct: 120 LALALAADIAVVGKGTR--LLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTG 177
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
++A+++G+V VE E + E A+ A +LA G
Sbjct: 178 EEAERLGLVALAVED-------------EKVYEKALEVAERLAQG 209
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 73.9 bits (182), Expect = 5e-15
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
T AL C R K GL+ G + LP+LT+ LD+ L+G+T A
Sbjct: 146 LTQALMCDVRFAAAGAK--FAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLA 203
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 106
++A ++G+V ++V P R +EY E++A +
Sbjct: 204 EEAAQLGLVKEVVTP-----EQLMPRALEYAEDIARYCS 237
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 73.0 bits (180), Expect = 6e-15
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
++LA I K +G+ + L ++ + +++ LT +TL
Sbjct: 116 LGISLASDMAICADSAK--FVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYP 173
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
++AK G+V ++ + EVA A +LA+
Sbjct: 174 EEAKDWGLVSRVYPK-------------DEFREVAWKVARELAAA 205
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 72.6 bits (179), Expect = 7e-15
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AL R+ V +GL+P +G + LP+L L ++ L L A++A
Sbjct: 110 ALWGDLRLAAVGAS--FTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEA 167
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+G+V ++V E L E A++ A +LA G
Sbjct: 168 LALGLVHRVVPA-------------EKLMEEALSLAKELAQG 196
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 74.1 bits (182), Expect = 9e-15
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
L + D LP G++PG RL + + L G+ + A +
Sbjct: 303 LLVFDRVLASSDAY--FSLPAAKEGIIPG-AANLRLGRFAGPRVSRQVILEGRRIWAKEP 359
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+ +VD++VEP + L+ + ++L
Sbjct: 360 EARLLVDEVVEP-------------DELDAAIERSLTRLDGD 388
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 72.7 bits (179), Expect = 1e-14
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
A++ C + P G P + PK+ + +M + G+ L A
Sbjct: 135 ASILPLCDLVWANEKAW--FQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTA 192
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
+A G+V Q+ + + +LAS
Sbjct: 193 REACAKGLVSQVFLT-------------GTFTQEVMIQIKELASY 224
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 72.0 bits (177), Expect = 2e-14
Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 15/152 (9%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
A + C + DK L P LGL+ G T LP + + K K
Sbjct: 128 AALVALCDIVYSINDKVY-LLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKY 186
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRTKPMI--- 123
D + G + + P + +V ++ L K ++
Sbjct: 187 DIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSN 239
Query: 124 PDKVLDVALKFEFVRNQIFGK---AKEKVMKM 152
+ A E + + ++ ++
Sbjct: 240 HIDAFNKANSVEVNESLKYWVDGEPLKRFRQL 271
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 70.3 bits (173), Expect = 4e-14
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
++ALAC + L +GL+P G + LP L M +T + + A
Sbjct: 108 CSLALACDLVVAAPASY--FQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISA 165
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
A + G++ + + E V + ++ G
Sbjct: 166 ATAFEWGMISHITSA-------------DEYESVLTDVLRSVSGG 197
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 70.3 bits (173), Expect = 5e-14
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 14/126 (11%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AC +R + +P + GL+ G T+R + L + + + AD+A
Sbjct: 117 FAACKWRYCTPEAG--FRMPGLKFGLVLG---TRRFRDIVGADQALSILGSARAFDADEA 171
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
+++G V E + A+ +
Sbjct: 172 RRIGFVRDCAAQ-----AQWPALIDAAAEAATALDPATRATLHRVLRDDHDDA----DLA 222
Query: 131 ALKFEF 136
AL
Sbjct: 223 ALARSA 228
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 69.9 bits (172), Expect = 7e-14
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
ALAC ++ ++ + LG EV +G + + L + D+ LTG+ ++A +A
Sbjct: 113 ALACDLVVMDEEAR--LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREA 169
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---PDK 126
K +G+V+++ P E A A ++A + TK ++ P
Sbjct: 170 KALGLVNRIAPP-------------GKALEEAKALAEEVAKNAPTSLRLTKELLLALPGM 216
Query: 127 VLDVALKFE 135
L+ +
Sbjct: 217 GLEDGFRLA 225
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 69.6 bits (171), Expect = 1e-13
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLKADK 69
ALAC R+ +D + GL G + LP+ D+ LTG+ + AD+
Sbjct: 142 ALACDVRVASQDAY--FRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADE 199
Query: 70 AKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
A+++G+V + V E L E ++A
Sbjct: 200 AERIGLVSRKVAS-------------ESLLEECYAIGERIAGF 229
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 69.1 bits (169), Expect = 3e-13
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
+ C + ++ + +G G G+ L + ++ G+T A++
Sbjct: 186 HVVCDLTLASREYAR-FKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQM 244
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
+MG V+ + E LE V + A+++ +
Sbjct: 245 HQMGAVNAVAEH-------------AELETVGLQWAAEINA 272
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 68.0 bits (167), Expect = 3e-13
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 7/122 (5%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
T+ P LG P + PK+ + +M + GK L A
Sbjct: 137 VTLLGLFDAVYASDRAT--FHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTA 194
Query: 68 DKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKV 127
+A G+V ++ + ++ L+ A + L K I + + V
Sbjct: 195 GEACAQGLVTEVFPD-----STFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAV 249
Query: 128 LD 129
Sbjct: 250 NA 251
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 68.0 bits (167), Expect = 3e-13
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
+ C I + G +G G+ L ++ ++ + A +A
Sbjct: 126 NVVCDLTIAADNAI--FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEA 183
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
MG+V+ +V E +E+ V ++
Sbjct: 184 LDMGLVNTVVPL-------------EKVEDETVQWCKEIMK 211
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 66.4 bits (163), Expect = 1e-12
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 22/131 (16%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK--TLKAD 68
I + P V +GL+ G R+ ++ L M L GK + A
Sbjct: 129 VTTTDIVIASEQAT--FFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQ 185
Query: 69 KAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRTKPMI---P 124
+A ++G++ ++VE + L E A A + S L + T+ I
Sbjct: 186 RAYELGLISEIVEH-------------DRLLERAHEIADIVNSNAPLAVRGTRLAILKGL 232
Query: 125 DKVLDVALKFE 135
+ L A
Sbjct: 233 NVPLHEAEILA 243
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 65.3 bits (160), Expect = 2e-12
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AC + L E +G+ P LPKL+A LTG+ A +A
Sbjct: 127 VGACDIAVAGPRSS--FALTEARIGVAPAIISLTLLPKLSA-RAAARYYLTGEKFDARRA 183
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
+++G++ E L + + + +V + LA+ K D+ +
Sbjct: 184 EEIGLITMAAEDL-------DAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAER 236
Query: 131 A 131
Sbjct: 237 L 237
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 65.3 bits (160), Expect = 3e-12
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
+ C I + G +G G G + ++ ++ + A +A
Sbjct: 142 HMMCDLTIAADNAI--FGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQA 199
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
MG+V+ +V LE+ V ++
Sbjct: 200 LDMGLVNTVVPL-------------ADLEKETVRWCREMLQ 227
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 64.2 bits (157), Expect = 6e-12
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLK 66
A +ALA +R+ + +GL G G LP++ L + + + G T++
Sbjct: 129 AVLALAADFRVADPSTR--FAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVR 186
Query: 67 ADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 112
A +A+++G++ +L E +E A A +LA G
Sbjct: 187 APEAERIGLISELTEE-------------GRADEAARTLARRLADG 219
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 64.1 bits (157), Expect = 7e-12
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A AC I + EV LGL+P A + + + + ++ + A +A
Sbjct: 118 AAACDIAIASTSAR--FCFSEVKLGLIP-AVISPYVVRAIGERAAKMLFMSAEVFDATRA 174
Query: 71 KKMGIVDQLVEP--LGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 118
+ +V V L E T++Y +++ N + + K
Sbjct: 175 YSLNLVQHCVPDDTL-------LEFTLKYASQISNNAPEAVKNSKQLAQY 217
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 63.8 bits (156), Expect = 1e-11
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
L C I + G +G G G+ L ++ ++ + A +A
Sbjct: 128 HLVCDLTIAADNAI--FGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEA 185
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
++MG+V+ +V + LEE + A ++ S
Sbjct: 186 ERMGMVNTVVPV-------------DRLEEEGIQWAKEILS 213
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 59.9 bits (146), Expect = 1e-10
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
A I + L E++ GL P A L + MTL K + +A
Sbjct: 119 VSATDIAIADQTAS--FSLSELLFGLYP-ACVLPFLIRRIGRQKAHYMTLMTKPISVQEA 175
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 113
+ G++D + ++L + +A K
Sbjct: 176 SEWGLIDAFDAES-------DVLLRKHLLRLRRLNKKGIAHYK 211
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 60.0 bits (146), Expect = 2e-10
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 15/132 (11%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
AC + LP V G + ++ V +M LTG T AD A
Sbjct: 123 MAACDLAYASPAAR--FCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWA 179
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
G++++++ + +A + L G +NR + L+
Sbjct: 180 LAAGLINRILPE-----AALATHVADLAGALAARNQAPLRRGLETLNRHLEL----PLEQ 230
Query: 131 ALKFE---FVRN 139
A V +
Sbjct: 231 AYALATPVMVEH 242
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 58.0 bits (141), Expect = 8e-10
Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 31/140 (22%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
+C I V K+ P V +GL G L + L+M TG+ + A +A
Sbjct: 145 VASCD--IAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEA 201
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS--------GKLKINRTKPM 122
G++ ++V L+E + A ++AS GK + P
Sbjct: 202 LLHGLLSKVVPE-------------AELQEETMRIARKIASLSRPVVSLGKATFYKQLPQ 248
Query: 123 IPDKVLDVALKFE---FVRN 139
L A V N
Sbjct: 249 ----DLGTAYYLTSQAMVDN 264
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 57.3 bits (139), Expect = 2e-09
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
C + +D + + + +GL G L + +M +TG+ + AD A
Sbjct: 138 VAMCDLAVATRDAR--FAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDA 194
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV 130
K +G+V+++V P ++ + ++ + +A GK R ++
Sbjct: 195 KGLGLVNRVVAP-----KALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIETD----IES 245
Query: 131 ALKFE 135
A
Sbjct: 246 AYADA 250
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 57.5 bits (139), Expect = 2e-09
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
+AL I D K +G P + + +P AG + TG +
Sbjct: 173 TDIALHADQVIAAADAK--IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITG 227
Query: 68 DKAKKMGIVDQLVEP--LGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRT 119
+A + G+ + +P L + RT +E +A +QL KL N
Sbjct: 228 AQAAEWGLAVEAPDPADL-------DARTERLVERIAAMPVNQLIMAKLACNTA 274
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 53.8 bits (130), Expect = 2e-08
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 11 ALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKA 70
C I +D P V++ + G ++ TG+ + A++
Sbjct: 136 CWPCDLIIAAEDAL--FSDPVVLMDI--GGVEYHGHTWELGPRKAKEILFTGRAMTAEEV 191
Query: 71 KKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 111
+ G+V+++V P +R L+ A ++A
Sbjct: 192 AQTGMVNRVV---------PRDR----LDAETRALAGEIAK 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 9e-08
Identities = 47/320 (14%), Positives = 88/320 (27%), Gaps = 101/320 (31%)
Query: 79 LVEPLGPGLNHPEERTMEYLEEVAV--NTASQLASGKLKINRTKPMI----------PDK 126
L+ P+ P T Y+E+ N A K ++R +P + P K
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPAK 151
Query: 127 ---------------VLDVALKFEFVR---NQIF----GKAK--EKVMKMSGGLYPAPLK 162
LDV L ++ +IF E V++M L +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQID 210
Query: 163 ILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQ-SKGLMGL-----------FRAQTECKK 210
R+ + +L + L+ L F CK
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CK- 267
Query: 211 NRLGKPQTPVKT--VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG------- 261
+ T V L A H+++D T+ D + L + L
Sbjct: 268 -------ILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 262 -QIKTG------LDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNA-DMVIE-------- 305
++ T + R ++ D ++ ++ D + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKH-------VNCDKLTTIIESSLNVLEPAEYR 372
Query: 306 ------AVF-EDINIKHQVI 318
+VF +I ++
Sbjct: 373 KMFDRLSVFPPSAHIPTILL 392
Score = 29.4 bits (65), Expect = 2.0
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 113 KLKINRTKPMIPDKVLDVALKFEFVRNQIF---GKAKEKV-------MKMSGGLYPAPLK 162
K++ + T +L+ + +F + I K + V K+ L +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY- 564
Query: 163 ILDVVRTGIEKGPSAGYEAEAEGFSQLA 190
D++R + EA Q+
Sbjct: 565 -TDLLRIALMA-EDEAIFEEAH--KQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 67/187 (35%)
Query: 2 FAEPSLATVALACHYRIVVKDKKTGLGLPE--VMLGL-LPG---AGGTQRLPKLTALPNV 55
F +P+L + A + + K GL +P G L G A L +L +V
Sbjct: 1731 FTQPALTLMEKAA-FEDL---KSKGL-IPADATFAGHSL-GEYAA--------LASLADV 1776
Query: 56 LD----MTLT---GKTLK----------------ADKAKKMGI------VDQLVEPLGPG 86
+ + + G T++ A ++ + +VE +G
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG-- 1834
Query: 87 LNHPEERTMEYLEEVAVNTASQ--LASGKLK--------INRTKPM-IPDKVLDVALKFE 135
+RT +E V N +Q +A+G L+ +N K I L +L E
Sbjct: 1835 -----KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Query: 136 FVRNQIF 142
V +F
Sbjct: 1890 EVEGHLF 1896
Score = 39.6 bits (92), Expect = 0.001
Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 64/148 (43%)
Query: 231 MGAGIAHVTVDKGYNT--IVKDSFEKG---LARGLG----QI-------KTGLDGAVKRK 274
MG + Y T +D + + G I T G K K
Sbjct: 1631 MGMDL--------YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 275 KMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIK-------------------- 314
++ R+ Y A + ++ + + E +F++IN
Sbjct: 1683 RI----RENYSA-----MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 315 ----------HQVIKEIEAVVPPHCVVA 332
+ +K + ++P A
Sbjct: 1734 PALTLMEKAAFEDLKS-KGLIPADATFA 1760
Score = 31.6 bits (71), Expect = 0.55
Identities = 46/263 (17%), Positives = 66/263 (25%), Gaps = 107/263 (40%)
Query: 10 VALACH--YRI------VVKD-KKTGLGLPEVMLGLLPGAGGTQ------------RLPK 48
+ + C+ Y +++D + G+P ML + + TQ LP
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI---SNLTQEQVQDYVNKTNSHLPA 362
Query: 49 LT----ALPN-----VLD---MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTM- 95
+L N V+ +L G L KAK +DQ P ER +
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-------SERKLK 415
Query: 96 --------------EYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDV-------ALKF 134
L + L + N IP V D L
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSG 473
Query: 135 EFVRN---QIFGKAK--EKVMKMSGGLYPAPLKILD------------VVR----TGI-- 171
I E + ILD R TG+
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFK------ATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Query: 172 ------EKGPSAGYEAEAEGFSQ 188
+ P Y GF Q
Sbjct: 528 IVAGTLDINPDDDY-----GFKQ 545
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 42.0 bits (99), Expect = 2e-04
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MTLTGKTLKA 67
+ +++V + + + +PEV +GL P GG+ L + +P + + LT + A
Sbjct: 160 LMAGASHKVVTE--TSRIAMPEVTIGLYPDVGGSYFLNR---MPGKMGLFLGLTAYHMNA 214
Query: 68 DKAKKMGIVDQLVE 81
A +G+ D +
Sbjct: 215 ADACYVGLADHYLN 228
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 41.2 bits (97), Expect = 3e-04
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 10 VALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MTLTGKTLKA 67
+++ +R+ +K +PE +GL P GG LP+ L L + LTG LK
Sbjct: 120 LSVHGQFRVA--TEKCLFAMPETAIGLFPDVGGGYFLPR---LQGKLGYFLALTGFRLKG 174
Query: 68 DKAKKMGIVDQLVE 81
+ GI V+
Sbjct: 175 RDVYRAGIATHFVD 188
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 38.1 bits (87), Expect = 0.003
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLG 261
+A++G G+ G A G+ + F+K RG G
Sbjct: 3 VPIAIIGTGIAGLSAAQALTAAGHQVHL---FDKS--RGSG 38
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 36.1 bits (82), Expect = 0.016
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 14/94 (14%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
K+V +LG+G + V D G V + + ++ + D
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVND 58
Query: 281 RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIK 314
A + D+VI + +
Sbjct: 59 DAALDAEV---------AKHDLVISLIPYTFHAT 83
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 34.7 bits (78), Expect = 0.041
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQ 262
+ V ++GAG+ G+ A + + + ++K G
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA--DDSGG 41
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 34.3 bits (78), Expect = 0.043
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 33/140 (23%)
Query: 221 KTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEKGL--ARGLGQIKTGLDGAVKRKKMS 277
KTVA+LGA G MGA I D ++ + +G +G+G T DG +
Sbjct: 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDE---- 67
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSA 337
AD+V+ A+ NI +V ++I V P +V +A
Sbjct: 68 ----------------------ADVVVLAL--PDNIIEKVAEDIVPRVRPGTIVLILDAA 103
Query: 338 IPITKIAAASKRPDKVRNMG 357
P + R D +G
Sbjct: 104 APYAGVMPE--RADITYFIG 121
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold,
helix bundle, oxidoreductase; 1.75A {Methanocaldococcus
jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A*
3daf_A* 3dag_A* 3f46_A* 3h65_A*
Length = 358
Score = 34.0 bits (77), Expect = 0.073
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 298 KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPITKIAAASKRPDK 352
+ AD+VI + + N + +IK+ +P +V T+ IP TK A K +
Sbjct: 140 EGADIVITWLPKG-NKQPDIIKKFADAIPEGAIV-THACTIPTTKFAKIFKDLGR 192
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 31.3 bits (71), Expect = 0.14
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 218 TPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
+ V+GAG +G IA + ++ L + V K++
Sbjct: 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVT------VADHDLAALAVLNRMGVATKQVD 56
Query: 278 ALDRDRYLASLVG---TLSYDPFKNADMVIEAVFE 309
A D +L G +S PF ++ +A
Sbjct: 57 AKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKA 91
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 32.3 bits (73), Expect = 0.24
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK-----GLAR 258
++G+GL GA A+ +V EK G A
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLV---IEKRNHIGGNAY 41
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 31.5 bits (72), Expect = 0.33
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIV 248
V+V+G G MG +A V + +G +
Sbjct: 11 DVSVIGLGAMGTIMAQVLLKQGKRVAI 37
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 31.7 bits (73), Expect = 0.34
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
K + ++GAG +G +AH+ + K +V +G+ G ALD
Sbjct: 6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGK-----------------ALD 48
Query: 281 ------RDRYLASLVGTLSYDPFKNADMVI 304
+ + GT Y +N+D+VI
Sbjct: 49 LLQTCPIEGVDFKVRGTNDYKDLENSDVVI 78
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 31.6 bits (72), Expect = 0.38
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 40/132 (30%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
K V V G G +G A GY + D + +A +
Sbjct: 23 KIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI-------------------- 62
Query: 281 RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV--ATNTSAI 338
NAD+VI +V ++ ++ I+ ++ + + ++ T+
Sbjct: 63 ----------------LANADVVIVSVPINLTLE--TIERLKPYLTENMLLADLTSVKRE 104
Query: 339 PITKIAAASKRP 350
P+ K+
Sbjct: 105 PLAKMLEVHTGA 116
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 31.8 bits (71), Expect = 0.41
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLD 268
+ ++GAG G G A + GY +E G G ++ LD
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWH--LYECNDTPG-GLSRSFLD 54
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 31.1 bits (70), Expect = 0.41
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 211 NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIV 248
+ L K V +LG+G +A V G+ +V
Sbjct: 19 SSLAKVPDEAPKVGILGSGDFARSLATRLVGSGFKVVV 56
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 31.0 bits (71), Expect = 0.47
Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 34/119 (28%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIV------KDSFEKGLARGL-GQIKTGLDGAVK 272
++ V ++G G MG A G+ + +S K + G+ + T +
Sbjct: 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVED 60
Query: 273 RKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV 331
+ D V+ + + + K++ ++ V
Sbjct: 61 F-------------------------SPDFVMLSSPVRTFRE--IAKKLSYILSEDATV 92
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 31.2 bits (70), Expect = 0.48
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254
K + ++GAG GA I +KG+ + ++
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHI---IDQ 34
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 30.9 bits (71), Expect = 0.52
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 23/90 (25%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
+ +AV+G+G +G IA++ +V +G+ +G ALD
Sbjct: 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGK-----------------ALD 47
Query: 281 ------RDRYLASLVGTLSYDPFKNADMVI 304
+ ++GT Y +D+VI
Sbjct: 48 ITHSMVMFGSTSKVIGTDDYADISGSDVVI 77
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.8 bits (69), Expect = 0.53
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIV 248
V + G G G + + GY+ +
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVF 47
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.8 bits (69), Expect = 0.53
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIV 248
+AVLG G +G +A D G+ +
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVTI 47
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 30.9 bits (71), Expect = 0.53
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 23/90 (25%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
K ++++GAG +G+ AH K IV +G+ +G ALD
Sbjct: 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGK-----------------ALD 45
Query: 281 ------RDRYLASLVGTLSYDPFKNADMVI 304
+ + + GT +Y N+D+++
Sbjct: 46 LYEASPIEGFDVRVTGTNNYADTANSDVIV 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.64
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 14/41 (34%)
Query: 146 KEKVMKMSGGL--YPAPLKILDVVRTGIEKGPSAGYEAEAE 184
K+ + K+ L Y A + P+ +A E
Sbjct: 19 KQALKKLQASLKLY-AD-----------DSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 6.4
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 316 QVIKEIEAVVPPHCVVATNTSAIPITKIAAA 346
Q +K+++A + + A + SA P I A
Sbjct: 20 QALKKLQASLKLY---ADD-SA-PALAIKAT 45
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 30.6 bits (68), Expect = 0.70
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 199 MGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIV 248
MG + + K + ++GAG G + + V
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTV 50
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 30.8 bits (70), Expect = 0.72
Identities = 14/133 (10%), Positives = 35/133 (26%), Gaps = 40/133 (30%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
+ V +LG GL+G + ++ + G +
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV--------------DEGFDV 54
Query: 281 RDRYLASLVGTLSYDPFKNADMVI--------EAVFEDIN-------------IKHQVIK 319
A+L +++ +++ + ++ +K V
Sbjct: 55 SADLEATLQ-----RAAAEDALIVLAVPMTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYD 109
Query: 320 EIEAVVPPHCVVA 332
++A H V
Sbjct: 110 AVKARNMQHRYVG 122
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 30.5 bits (70), Expect = 0.73
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 23/90 (25%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
+A++G+G++G +AH+ K +V +G +G LD
Sbjct: 8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGK-----------------GLD 50
Query: 281 ------RDRYLASLVGTLSYDPFKNADMVI 304
D + A G Y + AD+VI
Sbjct: 51 IAESSPVDGFDAKFTGANDYAAIEGADVVI 80
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 30.3 bits (69), Expect = 0.89
Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 34/120 (28%)
Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIV------KDSFEKGLARGL-GQIKTGLDGAV 271
++ V ++G G MG A G+ + +S K + G+ + T +
Sbjct: 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVE 91
Query: 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV 331
+ D V+ + + + K++ ++ V
Sbjct: 92 DF-------------------------SPDFVMLSSPVRTFRE--IAKKLSYILSEDATV 124
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 30.4 bits (68), Expect = 0.91
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYN-TIVKDSF 252
K V VLG+G++G A + KGY+ I+
Sbjct: 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 29.9 bits (67), Expect = 1.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 217 QTPVKTVAVLGAGLMGAGIAHVTVDKGYNTI 247
Q+ + T+A +G G IA + +
Sbjct: 21 QSMMTTIAFIGFGEAAQSIAGGLGGRNAARL 51
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
V V+GAG MG + +G T++ D+F+ G
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 29.8 bits (68), Expect = 1.4
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 23/90 (25%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
K ++++GAG +G+ IA + K + +G+ +G ALD
Sbjct: 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGK-----------------ALD 57
Query: 281 ------RDRYLASLVGTLSYDPFKNADMVI 304
A + G +Y+ +N+D+VI
Sbjct: 58 LNHCMALIGSPAKIFGENNYEYLQNSDVVI 87
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 29.7 bits (66), Expect = 1.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 215 KPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT 265
+ K VAV+GAG+ G A+ G N V FE G G++++
Sbjct: 8 DKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTV---FEAEGKAG-GKLRS 54
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.4 bits (65), Expect = 1.5
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
+ + G G MG I H G+ S ++ G
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLG 58
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 29.7 bits (66), Expect = 1.5
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIV--KDSFEKGLAR 258
++GAG G+ +A G ++ + G A
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY 69
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 210 KNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT 265
N L P P K + ++GAG+ G + G++ + E R G+IKT
Sbjct: 35 DNGLNPPGPP-KRILIVGAGIAGLVAGDLLTRAGHDVTI---LEANANRVGGRIKT 86
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 29.5 bits (65), Expect = 1.8
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 223 VAVLGAGLMGAGIAH-VTVDKGYNTIVKDSFEK-----GLAR 258
V V+GAG G G A + G + ++ + GLA
Sbjct: 13 VLVIGAGPTGLGAAKRLNQIDGPSWMI---VDSNETPGGLAS 51
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 29.4 bits (67), Expect = 1.8
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 23/90 (25%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
+ ++G+G++G +A + V K +V K + G ALD
Sbjct: 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGK-----------------ALD 47
Query: 281 ------RDRYLASLVGTLSYDPFKNADMVI 304
+ G+ +YD AD+VI
Sbjct: 48 TSHTNVMAYSNCKVSGSNTYDDLAGADVVI 77
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 24/109 (22%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRD 282
+ V+G GL+GA +A +G+ I + + + + +D
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV--------------ERQLVDE- 47
Query: 283 RYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV 331
+ A ++ + + ++++ + P +V
Sbjct: 48 -------AGQDLSLLQTAKIIFLCTPIQLILP--TLEKLIPHLSPTAIV 87
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 29.0 bits (66), Expect = 2.0
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD-- 280
+ +LGAG +G A + + +GY+ ++ + G +G ALD
Sbjct: 2 ITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQG-----------------EALDLA 44
Query: 281 ----RDRYLASLVGTLSYDPFKNADMVI 304
+ G+ SY+ + +D+V+
Sbjct: 45 HAAAELGVDIRISGSNSYEDMRGSDIVL 72
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 29.2 bits (65), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 216 PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT 265
P+T VAV+G G+ G +AH +G + ++ E G G + T
Sbjct: 12 PRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVL---LESSARLG-GAVGT 57
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 28.7 bits (65), Expect = 2.8
Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 54/139 (38%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV------KDSFEKGLARGLGQIKTGLDGAVKRK 274
KT+ + G GL+GA +A + + S + L RG+
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV------------- 53
Query: 275 KMSALDRDRYLASLVGTLSYDPFKNADMVI--------EAVFEDIN-------------- 312
D A AD++I + +
Sbjct: 54 -------DEATADFK-----VFAALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAG 101
Query: 313 -IKHQVIKEIEAVVPPHCV 330
K+++++ E + V
Sbjct: 102 STKYEIVRAAEYYLKDKPV 120
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 29.1 bits (65), Expect = 2.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 210 KNRLGKPQTPVKTVAVLGAGLMGAGI--AHVTVDKGYNTIV 248
+N L P K V ++GAG+ AG+ A+V G+ V
Sbjct: 24 RNGLKATSNP-KHVVIVGAGM--AGLSAAYVLAGAGHQVTV 61
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 28.5 bits (64), Expect = 3.6
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
+ ++G+G +GA + G N ++ D+ G
Sbjct: 5 LIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHG 41
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 28.7 bits (64), Expect = 3.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 211 NRLGKPQTPVKTVAVLGAGLMGAGI--AHVTVDKGYNTIV 248
+ +GK + +V VLG G AG+ A GY V
Sbjct: 3 DLIGKVKGS-HSVVVLGGGP--AGLCSAFELQKAGYKVTV 39
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 28.1 bits (62), Expect = 4.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDS 251
V V+GAG++G A ++ ++ +
Sbjct: 3 VVVIGAGVIGLSTALCIHERYHSVLQPLD 31
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 28.3 bits (62), Expect = 4.7
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 16/95 (16%)
Query: 221 KTVAVLGAGLMGAGIAH-VTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
K V +LG+G + + + + N V K +
Sbjct: 24 KNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSG------SKAISLDVT 77
Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIK 314
D L ++ + D+VI + +
Sbjct: 78 DDSA-LDKVL--------ADNDVVISLIPYTFHPN 103
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 27.9 bits (63), Expect = 5.9
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 24/89 (26%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD- 280
V V+GAG +GA +A + +V + G+ +G ALD
Sbjct: 3 VTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGK-----------------ALDM 45
Query: 281 -----RDRYLASLVGTLSYDPFKNADMVI 304
+ + GT Y P +++D+ I
Sbjct: 46 RESSPIHGFDTRVTGTNDYGPTEDSDVCI 74
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 27.9 bits (63), Expect = 6.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDS 251
K V ++G GL G + +G V D+
Sbjct: 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDT 36
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 27.6 bits (61), Expect = 6.0
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 207 ECKKNRLGKPQTPVKTVAVLGAGLMGAGIAH 237
+ + V +LGAG +G IA
Sbjct: 3 HKVHHHHHHIEGRHMKVLILGAGNIGRAIAW 33
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 27.5 bits (62), Expect = 6.4
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 25/92 (27%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV-KD-SFEKGLARGLGQIKTGLDGAVKRKKMSA 278
K V+V+GAG GA A + K +V D + +G A
Sbjct: 9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGK-----------------A 51
Query: 279 LD------RDRYLASLVGTLSYDPFKNADMVI 304
LD + A+++GT Y ++D+V+
Sbjct: 52 LDMLEASPVQGFDANIIGTSDYADTADSDVVV 83
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 27.6 bits (62), Expect = 6.8
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 29/96 (30%)
Query: 221 KTVAVLGAGLMG---------AGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAV 271
K V ++GAG +G G V D + LA G
Sbjct: 162 KNVIIIGAGTIGLLAIQCAVALGAKSV--------TAIDISSEKLALAK---SFGAMQTF 210
Query: 272 KRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAV 307
+MSA L L +++E
Sbjct: 211 NSSEMSAPQMQSVLRELRF---------NQLILETA 237
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 27.4 bits (60), Expect = 6.9
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 211 NRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYN 245
+ K + ++GAG + +A KG+
Sbjct: 1 SNAMKRSIEDTPIVLIGAGNLATNLAKALYRKGFR 35
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 27.5 bits (62), Expect = 7.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIV 248
V++LGAG MG+ ++ VD G +
Sbjct: 3 VSILGAGAMGSALSVPLVDNGNEVRI 28
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 27.5 bits (62), Expect = 7.2
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDS 251
K V VLG G A + G V D
Sbjct: 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDG 40
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.4 bits (61), Expect = 7.6
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
V V+G G +G A ++G+ +V + G
Sbjct: 7 VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENG 43
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 27.5 bits (62), Expect = 8.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 217 QTPVKTVAVLGAGLMGAGIAHVTVDKGYNT 246
+ +A+LGAG G +A V KG
Sbjct: 26 EPFKHPIAILGAGSWGTALALVLARKGQKV 55
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.5 bits (60), Expect = 8.1
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK-----GLARGLGQIKTGLDGAVKRK 274
+ A LG GL G A++ V + ++ + L GL + TG A+
Sbjct: 453 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDM 512
Query: 275 KMSALDRD-----RYLASLVGTLSYDPFKNADMVIEAVFEDIN 312
+ + R LA + ++Y + AD +I +
Sbjct: 513 FTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDE 555
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 27.2 bits (60), Expect = 9.0
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 184 EGFSQLAMTPQSKGL--MGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVD 241
+G+ T ++G+ +G+ T + P V V+G G G
Sbjct: 5 DGYQWTPETGLTQGVPSLGVISPPTNIEDTDKDGP----WDVIVIGGGYCGLTATRDLTV 60
Query: 242 KGYNTIV 248
G+ T++
Sbjct: 61 AGFKTLL 67
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 27.2 bits (61), Expect = 9.0
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG-LARG 259
V+G G++G+ IA+ + NT + FE G +
Sbjct: 20 AVVIGGGIIGSAIAYYLAKENKNTAL---FESGTMGGR 54
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 27.3 bits (61), Expect = 9.3
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 196 KGLMGLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTI 247
+ + + L + +V ++GAG++GA +A G+
Sbjct: 115 RRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLR 166
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 27.1 bits (61), Expect = 9.6
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 24/89 (26%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD- 280
+ V+GAG +GA A +K +V +G+ +G ALD
Sbjct: 3 ITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGK-----------------ALDM 45
Query: 281 -----RDRYLASLVGTLSYDPFKNADMVI 304
+ + G+ Y N+D+VI
Sbjct: 46 YESGPVGLFDTKVTGSNDYADTANSDIVI 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,486,117
Number of extensions: 351107
Number of successful extensions: 1112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 994
Number of HSP's successfully gapped: 182
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)