RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9056
(359 letters)
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 85.4 bits (210), Expect = 2e-20
Identities = 55/139 (39%), Positives = 79/139 (56%)
Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA 278
VK AVLGAG+MG GIA+ + KG ++KD E G+ +GL + L G V + +M+
Sbjct: 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTP 62
Query: 279 LDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAI 338
L + TLSY F N D+V+EAV E+ +K V+ E+E V ++A+NTS I
Sbjct: 63 AKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI 122
Query: 339 PITKIAAASKRPDKVRNMG 357
I+ +A A KRP+ M
Sbjct: 123 SISLLAKALKRPENFVGMH 141
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 87.8 bits (216), Expect = 2e-20
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 17/197 (8%)
Query: 14 CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 73
V +GLPEV LG+ PG GGT RLP+L + N ++ +GK +A+ A K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182
Query: 74 GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVALK 133
VD +V + L A++ + SG+L + +K+
Sbjct: 183 SAVDAVVTA-------------DKLGAAALDLIKRAISGELDYKAKRQPKLEKLKL---- 225
Query: 134 FEFVRNQIFGKAKEKVMKMSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTP 193
+ F AK V +G YPAP++ + ++ G E EA GF++LA T
Sbjct: 226 NAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTS 285
Query: 194 QSKGLMGLFRAQTECKK 210
S L+GLF E KK
Sbjct: 286 ASNCLIGLFLNDQELKK 302
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 73.0 bits (178), Expect = 6e-16
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKK---- 275
VK V V+G GLMGAGIA V G+ ++ D E LA+ I+ L K+K
Sbjct: 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63
Query: 276 -MSALDRDRYLASLVGTLSYDP-FKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVAT 333
++ L+++ + + D+V+EA+ E++ +K+++ K ++ H + A+
Sbjct: 64 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123
Query: 334 NTSAIPITKIAAASKRPDKVRNMGRI 359
NTS++ IT IA A+ R D+ +
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFF 149
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 69.8 bits (170), Expect = 3e-14
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 8 ATVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 67
+A+ C + + G PE++LG +PGAGGTQRL + ++M LTG + A
Sbjct: 113 CELAMMCDIIYAGEKAQ--FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISA 170
Query: 68 DKAKKMGI 75
AK+ G+
Sbjct: 171 QDAKQAGL 178
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 56.1 bits (135), Expect = 8e-10
Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 28/185 (15%)
Query: 192 TPQSKGLMGLFRAQTECKKNRLGKPQT-PVKTVAVLGAGL--MGAGIAHVTVDK------ 242
T + G+ RA +GKP+ + GA L + + V V
Sbjct: 13 THAAAGITNFMRAC--EVAKEVGKPEIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEE 70
Query: 243 GYNTIV-----KDSFEKGLARGLGQIKTGLDGAVKRKKMSALDRDRYLASLV------GT 291
++ K+ E L+ I + VK K + LV
Sbjct: 71 PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLK 130
Query: 292 LSYDPF---KNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTS--AIPITKIAAA 346
++ D + AD+VI + + N + +IK+ +P +V + KI
Sbjct: 131 VTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD 189
Query: 347 SKRPD 351
R D
Sbjct: 190 LGRED 194
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 40.7 bits (94), Expect = 9e-05
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
KT AVLG G G A KG + + D + + + +G
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 61
Query: 281 RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVV 331
+ V K+AD+++ V + I + + ++
Sbjct: 62 LTSDIGLAV--------KDADVILIVVPAI--HHASIAANIASYISEGQLI 102
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 34.0 bits (76), Expect = 0.012
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253
+ V+G GL+GA +A +G+ I +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 35.1 bits (79), Expect = 0.012
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 210 KNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKT 265
+N L P K V ++GAG+ G A+V G+ V E G G+++T
Sbjct: 21 RNGLKATSNP-KHVVIVGAGMAGLSAAYVLAGAGHQVTV---LEASERPG-GRVRT 71
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 34.3 bits (77), Expect = 0.015
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
V V+GAG MG + +G T++ D+F+ G
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 34.0 bits (77), Expect = 0.021
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
K + ++GAG GA I +KG+ + ++
Sbjct: 3 KKILIVGAGFSGAVIGRQLAEKGHQVHI---IDQR 34
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 32.9 bits (74), Expect = 0.026
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
K +A +G G MGA +A + GY V D
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFD 31
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 33.1 bits (74), Expect = 0.031
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIV 248
V++LGAG MG+ ++ VD G +
Sbjct: 3 VSILGAGAMGSALSVPLVDNGNEVRI 28
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 32.3 bits (72), Expect = 0.044
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
K+V +LG+G + V D G V
Sbjct: 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVAC 32
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 31.8 bits (71), Expect = 0.069
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLA 257
VA +G G MG +A + + +FEK L
Sbjct: 3 VAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALR 37
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 31.6 bits (71), Expect = 0.071
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 13/146 (8%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL------GQIKTGLDGAVKR 273
V V+GAG +GA +++G + IV + A G G++ +
Sbjct: 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 274 KKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVP-PHCVVA 332
+ G K + ++ V ++I I +++ + A +VA
Sbjct: 67 GDYDDCRDADLVVICAG----ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122
Query: 333 TNTSAIPITKIAAASKRP-DKVRNMG 357
TN I S P ++V G
Sbjct: 123 TNPVDILTYATWKFSGLPHERVIGSG 148
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 32.0 bits (71), Expect = 0.076
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 12 LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAK 71
LA I V +GL E L ++PG GGTQRLP+ + ++ + + L +AK
Sbjct: 117 LALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAK 176
Query: 72 KMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRTKPMIPDKVLDVA 131
+G++ ++E + + ++ E + KL IN+ + L +
Sbjct: 177 AVGLISHVLEQ-NQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIE 235
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 31.5 bits (70), Expect = 0.095
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
V V+G G+MGA +A +KG+ V +
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFN 31
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 32.1 bits (72), Expect = 0.098
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254
++G+GL GA A+ +V EK
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLV---IEK 32
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 31.1 bits (70), Expect = 0.100
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 10/132 (7%)
Query: 210 KNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVK--DSFEKGLARGLGQIKTGL 267
+N + + + + V+G G +G A + KG + D+ L ++
Sbjct: 9 QNLVPEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQ--- 65
Query: 268 DGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPP 327
G++ + Y S L + + + + ++K I V
Sbjct: 66 HGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQ 125
Query: 328 HC-----VVATN 334
+ +V TN
Sbjct: 126 NSPDCKIIVVTN 137
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 31.0 bits (69), Expect = 0.11
Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 8/138 (5%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNT--IVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
+ VLG G +G +G+ ++ + + + ++ L
Sbjct: 3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLA 62
Query: 281 RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCVVATNTSAIPI 340
L + + V I + H + IE + + +
Sbjct: 63 TSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPL------LMG 116
Query: 341 TKIAAASKRPDKVRNMGR 358
T AA + + + ++
Sbjct: 117 TTTHAARRDGNVIIHVAN 134
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 30.8 bits (69), Expect = 0.12
Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV-----KDSFEKGLARGLGQIKT--GLDGAVKR 273
+ + ++G G +GA +AH + +G ++ K G +
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
Query: 274 KKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCV-VA 332
+AL + S +G + + ++ V ++ + V
Sbjct: 62 NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121
Query: 333 TN 334
+N
Sbjct: 122 SN 123
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 31.1 bits (69), Expect = 0.12
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 10/133 (7%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV----KDSFEKGLARGLGQIKTGLDGAVKRKKM 276
+ V ++G G MG A G+ + + A LG I +G K+
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID---EGTTSIAKV 58
Query: 277 SALDRDRYLASLVGTLSYDPFKNADMV---IEAVFEDINIKHQVIKEIEAVVPPHCVVAT 333
D + S + K + V + ++K +++ ++E ++ V
Sbjct: 59 EDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGH 118
Query: 334 NTSAIPITKIAAA 346
+ + + +
Sbjct: 119 PIAGTEKSGVEYS 131
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 31.1 bits (69), Expect = 0.14
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
+A++G +MG + D G+ +
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFN 32
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 30.9 bits (69), Expect = 0.14
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
V +G G+MG ++ + GY+ +V D
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSD 30
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus
sp. [TaxId: 1409]}
Length = 276
Score = 31.3 bits (69), Expect = 0.15
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
V+G G++G+ IA+ + NT + FE G
Sbjct: 7 AVVIGGGIIGSAIAYYLAKENKNTAL---FESG 36
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 30.6 bits (68), Expect = 0.16
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
V +G G + +A +G +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSL 30
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 30.6 bits (68), Expect = 0.17
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV 248
V G+G G +A V K V
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCV 35
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 31.2 bits (69), Expect = 0.20
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
K V V G AG +G+ ++ GY+ +V D+ + +++ + ++
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 61
Query: 280 DRDR 283
DR
Sbjct: 62 DRKG 65
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 30.0 bits (67), Expect = 0.21
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 6/142 (4%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNT---IVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
+ V ++G G +G+ A +G IV ++ L A K K S
Sbjct: 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK-KIYS 64
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCV-VATNTS 336
D A LV + P K + ++ V +++NI ++K + VA N
Sbjct: 65 GEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124
Query: 337 AIPITKIAAASKRP-DKVRNMG 357
I S P ++V G
Sbjct: 125 DILTYATWKFSGFPKERVIGSG 146
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 29.6 bits (66), Expect = 0.24
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 18/128 (14%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
K ++++GAG +G+ AH K IV L I G+ A
Sbjct: 2 KKISIIGAGFVGSTTAHWLAAKELGDIV-----------LLDIVEGVPQGKALDLYEASP 50
Query: 281 RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKE-------IEAVVPPHCVVAT 333
+ + + GT +Y N+D+++ A + ++
Sbjct: 51 IEGFDVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP 110
Query: 334 NTSAIPIT 341
N I +
Sbjct: 111 NAVIIMVN 118
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 31.0 bits (68), Expect = 0.25
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
K VAV+GAG+ G A+ G N V FE
Sbjct: 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTV---FEAE 33
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 30.8 bits (68), Expect = 0.25
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
++ +A++GAG G A + + V FE+
Sbjct: 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVT-LFERR 38
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 30.5 bits (67), Expect = 0.32
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIV 248
+ ++GAG++G +A V +G+N I
Sbjct: 4 IVIIGAGIVGTNLADELVTRGWNNIT 29
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 29.6 bits (66), Expect = 0.42
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 200 GLFRAQTECKKNRLGKPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGL 256
G++R K G V+V G G + + +G +V D + +
Sbjct: 19 GVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV 75
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 29.3 bits (65), Expect = 0.42
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 7/118 (5%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNT-----IVKDSFEKGLARGLGQIKTGLDGAVKRKKMS 277
+ +GAG +G+ A + + + G A L G+D K
Sbjct: 3 LGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI-VGG 61
Query: 278 ALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHCV-VATN 334
A + ++ + K ++ ++ I + K+I P + V TN
Sbjct: 62 ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 29.9 bits (65), Expect = 0.44
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 216 PQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
P V ++G+G+ G A G + + E
Sbjct: 1 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTL---LEAR 37
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 29.2 bits (65), Expect = 0.49
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 12/145 (8%)
Query: 214 GKPQTPVKTVAVLGAGLMGAGIAHVTVDKGY-NTIVKDSFEKGLARGL------GQIKTG 266
+ P + V+G G +G A + K + + + +G G +
Sbjct: 14 EEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQ 73
Query: 267 LDGAVKRKKMSALDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEI-EAVV 325
V K S + + G + + + V ++N+ +I +I +
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAG----VRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP 129
Query: 326 PPHCVVATNTSAIPITKIAAASKRP 350
+V +N I S P
Sbjct: 130 DCIIIVVSNPVDILTYVTWKLSGLP 154
>d1e7ua1 a.118.1.6 (A:525-725) Phoshoinositide 3-kinase (PI3K)
helical domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 201
Score = 29.1 bits (65), Expect = 0.53
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 270 AVKR-KKMSALDRDRYLASLVGTLSYDPFKN---ADMVIEAVFEDINIKHQVI 318
AV++ + + D YL LV + ++P+ + A +++ + I H +
Sbjct: 120 AVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLF 172
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 29.4 bits (65), Expect = 0.55
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDS 251
V V+GAG++G A ++ ++ +
Sbjct: 3 VVVIGAGVIGLSTALCIHERYHSVLQPLD 31
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 29.0 bits (64), Expect = 0.81
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 215 KPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
+P V V V+GAG G + + G + V E
Sbjct: 3 QPPEEVD-VLVVGAGFSGLYALYRLRELGRSVHV---IETA 39
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 27.3 bits (60), Expect = 0.87
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254
K V ++G GL G + +G V D+
Sbjct: 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 28.9 bits (63), Expect = 0.89
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
K V VLG+G++G A + KGY+ +
Sbjct: 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPE 41
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 28.9 bits (63), Expect = 1.1
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 222 TVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKG 255
VAV+G G+ G +AH +G + ++ E
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTDAVL---LESS 32
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein
HI0607 {Haemophilus influenzae [TaxId: 727]}
Length = 167
Score = 28.3 bits (62), Expect = 1.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV 248
V V G+G M + + G+ +
Sbjct: 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLK 45
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 28.2 bits (62), Expect = 1.1
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 215 KPQTPVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRK 274
P K +AV+GAG G A +G+ + D+ + GQ K +
Sbjct: 38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDA----HSEIGGQFNIAKQIPGKEE 93
Query: 275 KMSALDRDRYLASLVG 290
L R + + G
Sbjct: 94 FYETLRYYRRMIEVTG 109
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEK 254
V V+G G+ G A + D G N +V E
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGLNVVV---LEA 30
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 142
Score = 27.5 bits (61), Expect = 1.3
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 21/99 (21%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSAL 279
++ + A ++ GIAHV + +TI+K E + + K++ L
Sbjct: 1 IEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPK-------------KKRTTDVL 47
Query: 280 DRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVI 318
D +K ++ +K ++
Sbjct: 48 KFDEKTEKF--------YKAIYSAMKKDLNFDKLKTIIL 78
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 27.8 bits (61), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYN--TIVKDSFEK 254
KTV V+GAG MG +A VD+G + ++E+
Sbjct: 25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYER 60
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 27.1 bits (59), Expect = 2.1
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 220 VKTVAVLGA-GLMGAGIAHVTVDKGYNTIVKDSFEK 254
+ + ++G G +G A GY + D +
Sbjct: 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 44
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 27.0 bits (58), Expect = 2.6
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFE 253
+ ++G G M + I + I+ S
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSSL 33
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 26.6 bits (58), Expect = 2.6
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGY--NTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSALD 280
+ ++G G +G+ A + KG+ ++ D +K + G + +
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY 62
Query: 281 RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVP-PHCVVATN 334
D + +V + P K + ++ + + + ++ + + P +V TN
Sbjct: 63 ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGL 260
KT+ +LGAG I +G I +
Sbjct: 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA 58
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 25.2 bits (55), Expect = 3.5
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 220 VKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLA 257
+K V VLG G +G + G + A
Sbjct: 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAA 38
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 26.8 bits (58), Expect = 3.7
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 221 KTVAVLG-AGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIK 264
K + G AG +G+ + + + D+F G R L +++
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVR 61
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 26.6 bits (58), Expect = 3.9
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 65 LKADKAKKMGIVDQLVE 81
+ A +AK+ GI+D+++E
Sbjct: 165 MNALEAKQYGIIDEVIE 181
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii
[TaxId: 5811]}
Length = 154
Score = 26.2 bits (57), Expect = 4.4
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 221 KTVAVLGAGLMGAGIAHVTVDKGYNTIV----KDSFEKGLARGLGQIKTGLDGAVKRKKM 276
K VA++G+G++G + ++ + +V +G A L + + +D V +
Sbjct: 8 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67
Query: 277 SALD---RDRYLASLVGTLSYDPFKNADMVIEAVFEDINIK--HQVIKEIEAVVP-PHCV 330
+ + + L+ P K N K ++ + I+ P +
Sbjct: 68 YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127
Query: 331 VATN 334
V TN
Sbjct: 128 VVTN 131
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 26.9 bits (58), Expect = 4.6
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 219 PVKT--VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
P +T V V+GAG G + G N I+ +K G
Sbjct: 16 PSETTQVLVVGAGSAGFNASLAAKKAGANVIL---VDKAPFSG 55
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 26.5 bits (57), Expect = 5.6
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
V V+G+G G A D G I+ EK G
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVIL---IEKEPVIG 52
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 202
Score = 26.1 bits (56), Expect = 5.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
+++ G G +GA A +G+ I D
Sbjct: 3 ISIFGLGYVGAVCAGCLSARGHEVIGVD 30
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 26.1 bits (56), Expect = 6.6
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARG 259
V ++G+G G A D G I+ EK G
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVIL---LEKEPIPG 59
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 25.3 bits (55), Expect = 7.3
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 8/145 (5%)
Query: 219 PVKTVAVLGAGLMGAGIAHVTVDKGYNTIVKDSFEKGLARGLGQIKTGLDGAVKRKKMSA 278
P K +AV+GAG +G+ +A +G + + R ++ G+ +S
Sbjct: 1 PTK-LAVIGAGAVGSTLAFAAAQRGIAREIVL-EDIAKERVEAEVLDMQHGSSFYPTVSI 58
Query: 279 LDRDRYLASLVGTLSYDPFKNADMVIEAVFEDINIKHQVIKEIEAVVPPHC-----VVAT 333
D + ++ E + ++K I + ++ T
Sbjct: 59 DGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118
Query: 334 NTSAIPITKIAAASKRP-DKVRNMG 357
N I + P +++ G
Sbjct: 119 NPVDIATHVAQKLTGLPENQIFGSG 143
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 25.8 bits (56), Expect = 7.4
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 65 LKADKAKKMGIVDQLVE 81
+ A + + G +D+++
Sbjct: 174 MSAQETLEYGFIDEIMA 190
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 222 TVAVL-GAGLMGAGIAHVTVDKGYNTIV 248
VA+L G G +G G+A G+ +V
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVV 29
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 25.3 bits (54), Expect = 8.8
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 223 VAVLGAGLMGAGIAHVTVDKGYNTIVKD 250
+ +G G + D+ +
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILS 29
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 25.3 bits (55), Expect = 9.0
Identities = 4/17 (23%), Positives = 12/17 (70%)
Query: 65 LKADKAKKMGIVDQLVE 81
+ +A++ GI+D+++
Sbjct: 174 MSPMEAQEFGILDKVLV 190
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 25.2 bits (55), Expect = 9.4
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 65 LKADKAKKMGIVDQLVE 81
L A +A + G+VD ++
Sbjct: 164 LSAPEAVEYGLVDSILT 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,269,649
Number of extensions: 59031
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 75
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)