BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9057
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 54/68 (79%)
Query: 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDE 271
RKKLE LY++YKD + +KI ++GI +F DDL+L P S VLIIAW+F+AA QCEFS+ E
Sbjct: 3 RKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQE 62
Query: 272 FMNGMLEL 279
FM+GM EL
Sbjct: 63 FMDGMTEL 70
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDE 271
+KKLE LY +YKD + +KI V+GI +F DDLSL P S VL+IAW+F+AA QCEFSR E
Sbjct: 3 KKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKE 62
Query: 272 FMNGMLEL 279
F++GM EL
Sbjct: 63 FLDGMTEL 70
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 213 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEF 272
++LE L+ +YKD E D IL EG+ +F +DL + P VL++AW+F+AA C+F+R EF
Sbjct: 6 QRLEELFRRYKDERE-DAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEF 64
Query: 273 MNG 275
+G
Sbjct: 65 FDG 67
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 210 VDRKKLESLYSKYKDASEP--DKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEF 267
D+K + L+ YK EP + I EG+ + +D+ + P + L++AW+ KA++ EF
Sbjct: 4 ADKKAILELFQTYK---EPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXEF 60
Query: 268 SRDEFMNGMLEL 279
S EF+ G+ L
Sbjct: 61 SEKEFVEGLANL 72
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 149 AMQDHKLK----SSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYK 204
AM ++K+K S +++ ++ F S T+ + L +N W ++ A ++Y+ +
Sbjct: 1 AMSNNKIKRKDASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIGTFT 60
Query: 205 EQKSSVDR-----KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIA 256
++ S+V K+L ++ Y + + D ++ ++KF+++L + E L +A
Sbjct: 61 DEVSTVAHPPVYPKELTQVFEHYINNNLFD---IDSLVKFIEELGYNLEDLATLCLA 114
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 105 RNYSEDSSNNIDEEVKELENN 125
RNYSE+ ++ IDEEVK++ N
Sbjct: 398 RNYSEEVASKIDEEVKKIVTN 418
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 105 RNYSEDSSNNIDEEVKELENN 125
RNYSE+ ++ IDEEVK++ N
Sbjct: 398 RNYSEEVASKIDEEVKKIVTN 418
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 207 KSSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 250
++ + R +E Y K K+ + ++ EG+ +F+D L+L E K
Sbjct: 390 QTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEK 433
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 207 KSSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 250
++ + R +E Y K K+ + ++ EG+ +F+D L+L E K
Sbjct: 390 QTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEK 433
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK 250
R +E Y K K+ + ++ EG+ +F+D L+L E K
Sbjct: 421 RYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEK 459
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 113 NNIDEEVKELENNYRKTQLLTILAQGELKMLKEI---ECAMQDHKLKSSQKDKVKRFISF 169
+N++EE+ + + + K L TIL + K L E+ + +QD + + K +VK + F
Sbjct: 265 HNVEEEINQAKQSSPKQXLKTILVRLLPKKLVELWIEQGIVQDEVIANISKVRVKNLVDF 324
Query: 170 TQTGELT 176
E T
Sbjct: 325 IHHWEFT 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,624,622
Number of Sequences: 62578
Number of extensions: 291478
Number of successful extensions: 829
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 30
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)