Query psy9057
Match_columns 279
No_of_seqs 148 out of 366
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 17:49:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077|consensus 99.9 1.1E-27 2.5E-32 220.0 7.8 128 152-279 1-130 (260)
2 PF14555 UBA_4: UBA-like domai 99.3 2.5E-12 5.4E-17 88.6 3.3 41 160-200 1-41 (43)
3 smart00804 TAP_C C-terminal do 97.4 0.00016 3.6E-09 54.5 3.6 44 154-197 7-50 (63)
4 PF03943 TAP_C: TAP C-terminal 97.4 0.0001 2.2E-09 53.2 1.9 39 161-199 2-40 (51)
5 KOG1364|consensus 96.4 0.0021 4.5E-08 62.7 2.9 44 156-199 3-47 (356)
6 PF00627 UBA: UBA/TS-N domain; 95.8 0.015 3.2E-07 38.7 3.7 33 160-193 3-35 (37)
7 PTZ00184 calmodulin; Provision 94.2 2.1 4.5E-05 33.5 12.3 65 212-277 83-147 (149)
8 smart00165 UBA Ubiquitin assoc 94.0 0.084 1.8E-06 34.4 3.5 34 160-194 2-35 (37)
9 cd00051 EFh EF-hand, calcium b 93.7 0.49 1.1E-05 30.6 6.8 61 215-276 2-62 (63)
10 cd00194 UBA Ubiquitin Associat 93.5 0.11 2.3E-06 34.1 3.4 35 161-196 3-37 (38)
11 PTZ00183 centrin; Provisional 91.8 1.2 2.6E-05 35.5 8.0 66 212-278 89-154 (158)
12 cd00052 EH Eps15 homology doma 91.3 1.2 2.6E-05 30.9 6.6 58 217-277 3-60 (67)
13 KOG2086|consensus 91.3 0.071 1.5E-06 52.7 0.6 40 159-198 4-43 (380)
14 PF13833 EF-hand_8: EF-hand do 90.9 0.44 9.5E-06 32.7 4.1 50 229-278 3-53 (54)
15 cd05031 S-100A10_like S-100A10 90.2 1.3 2.8E-05 34.2 6.5 66 213-278 8-79 (94)
16 PF05859 Mis12: Mis12 protein; 88.8 2.2 4.9E-05 36.0 7.5 90 14-104 3-100 (144)
17 PTZ00184 calmodulin; Provision 87.5 3.6 7.8E-05 32.1 7.5 63 213-276 11-73 (149)
18 KOG3763|consensus 85.5 0.72 1.6E-05 47.9 3.3 41 160-200 536-576 (585)
19 cd05029 S-100A6 S-100A6: S-100 85.1 4.1 9E-05 31.8 6.6 66 213-278 10-79 (88)
20 TIGR00264 alpha-NAC-related pr 84.6 1.3 2.8E-05 37.6 3.8 33 161-193 80-112 (116)
21 PRK06369 nac nascent polypepti 84.6 1.3 2.8E-05 37.5 3.8 34 160-193 77-110 (115)
22 cd05030 calgranulins Calgranul 84.1 3.3 7.2E-05 32.0 5.7 66 213-278 8-79 (88)
23 smart00027 EH Eps15 homology d 80.7 5.5 0.00012 30.7 5.8 64 212-278 9-72 (96)
24 PTZ00183 centrin; Provisional 80.0 14 0.0003 29.4 8.0 63 213-276 17-79 (158)
25 PF13499 EF-hand_7: EF-hand do 78.7 9.1 0.0002 26.8 5.9 62 214-276 1-66 (66)
26 smart00546 CUE Domain that may 75.6 2.6 5.6E-05 28.6 2.3 29 169-197 13-41 (43)
27 cd00213 S-100 S-100: S-100 dom 72.9 15 0.00032 27.5 6.1 67 212-278 7-79 (88)
28 cd05025 S-100A1 S-100A1: S-100 70.4 23 0.00051 27.0 6.8 66 213-278 9-80 (92)
29 KOG4351|consensus 69.5 2 4.3E-05 40.6 0.8 47 153-199 17-66 (244)
30 CHL00098 tsf elongation factor 68.9 5.7 0.00012 36.1 3.5 36 161-196 3-38 (200)
31 cd05026 S-100Z S-100Z: S-100Z 68.5 26 0.00057 27.3 6.8 65 214-278 11-81 (93)
32 PRK12332 tsf elongation factor 68.3 6 0.00013 35.8 3.6 36 160-195 5-40 (198)
33 PF13405 EF-hand_6: EF-hand do 68.0 8.5 0.00018 24.1 3.2 30 214-244 1-31 (31)
34 TIGR00116 tsf translation elon 66.7 6.4 0.00014 37.7 3.6 37 160-196 5-41 (290)
35 PF02845 CUE: CUE domain; Int 66.2 9.4 0.0002 25.8 3.4 36 161-196 3-39 (42)
36 COG1308 EGD2 Transcription fac 65.2 5.7 0.00012 34.1 2.6 33 162-194 87-119 (122)
37 PRK09377 tsf elongation factor 64.2 7.7 0.00017 37.1 3.6 37 160-196 6-42 (290)
38 cd05027 S-100B S-100B: S-100B 63.8 34 0.00073 26.7 6.5 64 213-276 8-77 (88)
39 COG5126 FRQ1 Ca2+-binding prot 63.1 33 0.00071 30.4 7.0 67 211-278 90-156 (160)
40 cd05023 S-100A11 S-100A11: S-1 63.0 37 0.0008 26.6 6.6 65 213-277 9-79 (89)
41 KOG0036|consensus 59.9 23 0.00049 36.3 6.1 64 212-276 81-144 (463)
42 cd00252 SPARC_EC SPARC_EC; ext 58.9 53 0.0012 27.2 7.2 61 211-276 46-106 (116)
43 COG5126 FRQ1 Ca2+-binding prot 58.0 59 0.0013 28.8 7.7 69 208-277 12-82 (160)
44 PF00036 EF-hand_1: EF hand; 57.6 5.9 0.00013 25.3 1.1 17 263-279 13-29 (29)
45 PF09279 EF-hand_like: Phospho 55.7 33 0.00072 25.5 5.1 61 214-276 1-67 (83)
46 KOG2756|consensus 54.8 8.1 0.00018 37.9 2.0 39 161-199 27-65 (349)
47 cd05007 SIS_Etherase N-acetylm 52.5 29 0.00063 32.0 5.1 30 163-192 226-255 (257)
48 TIGR03120 one_C_mch methenylte 49.9 7 0.00015 38.2 0.7 82 166-254 75-166 (312)
49 PF03765 CRAL_TRIO_N: CRAL/TRI 49.1 13 0.00029 26.0 1.9 25 171-195 28-52 (55)
50 KOG1071|consensus 47.5 22 0.00048 35.2 3.7 37 157-193 44-80 (340)
51 cd05022 S-100A13 S-100A13: S-1 47.1 92 0.002 24.6 6.6 65 213-277 8-74 (89)
52 cd00545 MCH Methenyltetrahydro 44.9 9 0.0002 37.4 0.7 82 166-254 75-166 (312)
53 PF14658 EF-hand_9: EF-hand do 44.3 69 0.0015 24.7 5.3 55 224-278 8-64 (66)
54 KOG0418|consensus 43.9 30 0.00064 32.1 3.7 43 154-197 157-199 (200)
55 PRK02264 N(5),N(10)-methenylte 41.2 9 0.0002 37.5 0.1 81 166-254 77-167 (317)
56 PF12096 DUF3572: Protein of u 40.9 1E+02 0.0022 25.1 6.0 58 159-251 20-77 (88)
57 PF05517 p25-alpha: p25-alpha 40.3 68 0.0015 27.5 5.3 64 215-278 1-69 (154)
58 PRK05441 murQ N-acetylmuramic 39.6 36 0.00079 32.1 3.8 35 163-197 239-273 (299)
59 PRK00116 ruvA Holliday junctio 37.5 89 0.0019 27.7 5.7 101 154-258 63-174 (192)
60 KOG0027|consensus 37.4 1.9E+02 0.004 23.9 7.3 65 212-277 7-71 (151)
61 TIGR00274 N-acetylmuramic acid 37.3 41 0.00088 31.8 3.7 34 163-196 234-267 (291)
62 PF07083 DUF1351: Protein of u 36.6 41 0.00089 30.5 3.5 60 60-134 54-113 (215)
63 cd00171 Sec7 Sec7 domain; Doma 36.6 3E+02 0.0064 24.2 10.1 33 245-277 122-160 (185)
64 PF10075 PCI_Csn8: COP9 signal 36.6 23 0.00051 29.2 1.8 37 163-199 100-136 (143)
65 PLN02964 phosphatidylserine de 36.2 2.1E+02 0.0046 30.6 9.0 63 215-278 181-243 (644)
66 KOG1733|consensus 35.4 65 0.0014 26.9 4.1 38 36-73 31-79 (97)
67 PRK12570 N-acetylmuramic acid- 34.6 47 0.001 31.4 3.7 35 163-197 235-269 (296)
68 TIGR00962 atpA proton transloc 33.3 90 0.002 32.1 5.7 51 22-72 449-500 (501)
69 PF05042 Caleosin: Caleosin re 33.2 1.6E+02 0.0035 26.8 6.6 64 207-271 90-159 (174)
70 PF13443 HTH_26: Cro/C1-type H 33.2 26 0.00056 24.6 1.3 37 210-251 22-58 (63)
71 COG1459 PulF Type II secretory 32.7 2.2E+02 0.0048 28.4 8.1 93 23-130 58-153 (397)
72 KOG0027|consensus 32.1 2.2E+02 0.0048 23.5 6.9 69 210-279 41-114 (151)
73 PF03793 PASTA: PASTA domain; 31.2 35 0.00076 24.0 1.8 26 168-193 5-30 (63)
74 COG0264 Tsf Translation elonga 30.7 56 0.0012 31.9 3.5 38 160-197 6-43 (296)
75 PF06972 DUF1296: Protein of u 30.6 87 0.0019 24.1 3.8 43 156-198 2-45 (60)
76 PF10384 Scm3: Centromere prot 29.8 42 0.00092 25.2 2.0 22 212-233 15-39 (58)
77 PF13693 HTH_35: Winged helix- 29.3 28 0.00061 27.6 1.1 34 68-101 29-62 (78)
78 KOG0034|consensus 29.0 1.8E+02 0.004 26.1 6.3 44 231-274 84-128 (187)
79 PF09107 SelB-wing_3: Elongati 27.6 67 0.0015 23.2 2.7 22 162-183 12-33 (50)
80 PHA02629 A-type inclusion body 27.3 67 0.0014 24.4 2.7 16 23-38 25-40 (61)
81 PRK09281 F0F1 ATP synthase sub 24.2 1.5E+02 0.0033 30.5 5.5 48 25-72 453-501 (502)
82 KOG0028|consensus 24.1 3.4E+02 0.0073 24.8 7.0 63 214-277 34-96 (172)
83 TIGR01395 FlgC flagellar basal 23.3 1.5E+02 0.0032 24.7 4.4 45 106-150 90-134 (135)
84 PF01314 AFOR_C: Aldehyde ferr 22.5 32 0.0007 33.5 0.3 37 235-272 115-151 (382)
85 TIGR00084 ruvA Holliday juncti 22.3 75 0.0016 28.4 2.6 97 154-254 62-168 (191)
86 COG2922 Smg Uncharacterized pr 22.3 72 0.0016 28.6 2.4 38 214-251 4-41 (157)
87 PF14565 IL22: Interleukin 22 22.0 1.2E+02 0.0027 26.6 3.8 51 35-89 78-128 (139)
88 COG2103 Predicted sugar phosph 20.2 92 0.002 30.5 2.8 37 162-198 236-272 (298)
89 PF07848 PaaX: PaaX-like prote 20.0 80 0.0017 24.1 2.0 39 213-252 4-42 (70)
No 1
>KOG3077|consensus
Probab=99.94 E-value=1.1e-27 Score=219.95 Aligned_cols=128 Identities=45% Similarity=0.831 Sum_probs=117.4
Q ss_pred cccCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCchhhh-ccccccCCcccccc-cCCccCHHHHHHHHHHhcCCCCCC
Q psy9057 152 DHKLKSSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLA-SDNYFQNPSAYYKE-QKSSVDRKKLESLYSKYKDASEPD 229 (279)
Q Consensus 152 m~kLss~QkelVrQF~sITGASek~A~qyLkaanWdLE~A-vdaFF~nP~~~~~s-s~~s~~~kkLeaLFDkYkDpddpD 229 (279)
|++|+..++.++++|+.+|+++++++..+|.+++|++..| .+.||.+|...... ..+.++.+.+.++|.+|+||++++
T Consensus 1 mnklk~~~~d~~~~~~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~l~~~f~~y~d~~d~~ 80 (260)
T KOG3077|consen 1 MNKLKSSQKDKFEQFMSFTASRKKTSLSCLAACDWNLKYAFNDSYYTNPQSLREESVQARVSEKRLEELFNQYKDPDDDN 80 (260)
T ss_pred CCccchhHHHHHHhhcccccccchhhhhhhcccccccchhcccchhcchhHHHHhhhhccccHHHHHHHHHHhcCccccc
Confidence 7888889999999999999999999999999999999999 67777777654433 256778999999999999999888
Q ss_pred ccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhcC
Q psy9057 230 KILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLEL 279 (279)
Q Consensus 230 ~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~L 279 (279)
.||+||+.+||+||||+|+|+++|||||+|+|++||+|||++|+.||.+|
T Consensus 81 ~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 81 LIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred ccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999875
No 2
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.28 E-value=2.5e-12 Score=88.57 Aligned_cols=41 Identities=34% Similarity=0.665 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccCCc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNPS 200 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~nP~ 200 (279)
+++|++||+|||+++.+|++||++++|||+.|++.||+++.
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999875
No 3
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.40 E-value=0.00016 Score=54.49 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=40.9
Q ss_pred cCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcccccc
Q psy9057 154 KLKSSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQ 197 (279)
Q Consensus 154 kLss~QkelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~ 197 (279)
.++..|.++|.+|+..||.+.+=+..||+.++||++.|+..|-.
T Consensus 7 ~~~~~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 7 TLSPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999975
No 4
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=97.36 E-value=0.0001 Score=53.24 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=34.6
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccCC
Q psy9057 161 DKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 199 (279)
Q Consensus 161 elVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~nP 199 (279)
++|.+|+..||.+.+-|..||+.++||++.|+..|-...
T Consensus 2 ~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~ 40 (51)
T PF03943_consen 2 EMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEELK 40 (51)
T ss_dssp HHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998654
No 5
>KOG1364|consensus
Probab=96.43 E-value=0.0021 Score=62.68 Aligned_cols=44 Identities=27% Similarity=0.479 Sum_probs=40.0
Q ss_pred CcchHHHHHHHHhhhC-CCHHHHHHHHHhCCCchhhhccccccCC
Q psy9057 156 KSSQKDKVKRFISFTQ-TGELTAINCLSQNDWKLDLASDNYFQNP 199 (279)
Q Consensus 156 ss~QkelVrQF~sITG-ASek~A~qyLkaanWdLE~AvdaFF~nP 199 (279)
..+++++|.+|+.||+ .+...|++||++.+|+++.|++-||.+.
T Consensus 3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~ 47 (356)
T KOG1364|consen 3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHG 47 (356)
T ss_pred cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 3467899999999999 8999999999999999999999999764
No 6
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.78 E-value=0.015 Score=38.69 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASD 193 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~Avd 193 (279)
.+.|++.+++ |.++..|++.|..++||++.|++
T Consensus 3 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 3 EEKVQQLMEM-GFSREQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 4679999999 99999999999999999999986
No 7
>PTZ00184 calmodulin; Provisional
Probab=94.15 E-value=2.1 Score=33.46 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhh
Q psy9057 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 277 (279)
Q Consensus 212 ~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk 277 (279)
...+..+|..| |.+..+.|+.+.+.++|..+|+.+.+..+-.+...+....-|.|+.++|+..+.
T Consensus 83 ~~~~~~~F~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVF-DRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhh-CCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 45788899888 444457899999999999999888776666666666666679999999998764
No 8
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=93.97 E-value=0.084 Score=34.44 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDN 194 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~Avda 194 (279)
.+.|++++++ |.++..|+..|.+++||++.|++-
T Consensus 2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 3567788877 999999999999999999999864
No 9
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.68 E-value=0.49 Score=30.60 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q psy9057 215 LESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGM 276 (279)
Q Consensus 215 LeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gw 276 (279)
+..+|..|. ++..+.|..+-+...+..+|..+.+..+-.+...+....-|.++-++|+..+
T Consensus 2 ~~~~f~~~d-~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFD-KDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhC-CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 456788774 4445789999999999999999988777778888888788999999998754
No 10
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=93.50 E-value=0.11 Score=34.06 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccc
Q psy9057 161 DKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYF 196 (279)
Q Consensus 161 elVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF 196 (279)
+.|.+++++ |.++..|+..|..++||++.|++-.|
T Consensus 3 ~~v~~L~~m-Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEM-GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 467777774 99999999999999999999987544
No 11
>PTZ00183 centrin; Provisional
Probab=91.78 E-value=1.2 Score=35.48 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 212 ~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
...+..+|..| |.++.+.|+.+.+..+|..+|..+.+-.+-.+...+....-|.|+.++|+..+..
T Consensus 89 ~~~l~~~F~~~-D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLF-DDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHh-CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 46788999876 5445578999999999999998887766666667777677799999999998753
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=91.32 E-value=1.2 Score=30.88 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhh
Q psy9057 217 SLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 277 (279)
Q Consensus 217 aLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk 277 (279)
++|..| |++..+.|+.+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|.
T Consensus 3 ~~F~~~-D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 3 QIFRSL-DPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHHh-CCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHH
Confidence 467776 44445789999999999999984444333 33456667789999999999885
No 13
>KOG2086|consensus
Probab=91.30 E-value=0.071 Score=52.67 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccC
Q psy9057 159 QKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 198 (279)
Q Consensus 159 QkelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~n 198 (279)
..+.+++|+.+||.++..|+.||...+|+++.|...++..
T Consensus 4 p~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~ 43 (380)
T KOG2086|consen 4 PLDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEA 43 (380)
T ss_pred chhHHHHHhccCCCCccccccccccCCCchhhhhhhhccc
Confidence 3567999999999999999999999999999999999865
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=90.90 E-value=0.44 Score=32.70 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=46.1
Q ss_pred CccCHHHHHHHHhhcCCC-CCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 229 DKILVEGIMKFLDDLSLS-PESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 229 D~IgiDGiirlcEDLGVd-PEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
+.|+.+.+...+..+|+. +.+-.+=.|-+.+-...-|.|+.+||+..|..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 579999999999989999 98888999999999999999999999999875
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=90.23 E-value=1.3 Score=34.18 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCC-CCCccCHHHHHHHHhh-----cCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 213 KKLESLYSKYKDAS-EPDKILVEGIMKFLDD-----LSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 213 kkLeaLFDkYkDpd-dpD~IgiDGiirlcED-----LGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
..+...|..|-+.+ +.+.|+.+-+..++.. +|..+....+--+...+....-|.|+-++|+..|..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45677788886533 2478999999998876 677877666666666778888899999999987754
No 16
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=88.79 E-value=2.2 Score=36.03 Aligned_cols=90 Identities=19% Similarity=0.416 Sum_probs=65.7
Q ss_pred eeeeecccchhhhHHHHHHHHHhhhhHHHHHHHHHHhhhh-------hHhhhHHHHHHHHhHHHhhhccCCchhhhhh-c
Q psy9057 14 VKFFGYSTLTVQQDFERKLISLLNSNIKALQKKLSEKCKT-------DQHKQNLEKCMQKFKDTFQNNLKGPLEEFNT-S 85 (279)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 85 (279)
.-||||...++-.|.-...-.++..-+.++.+.|.+.-.. .+..+.+++|+.|+..-++..+.--+..|-. .
T Consensus 3 te~fgf~P~~~iDdIiNavnd~l~~~~~~~E~~l~~~~~~~~~~~~~~~~~~ei~~G~~kletlle~~~Dk~fdkfE~y~ 82 (144)
T PF05859_consen 3 TEHFGFTPQSFIDDIINAVNDILYDAFDAVEEYLLERLPSKLGSEDYPERSEEIEKGTHKLETLLESRVDKNFDKFELYC 82 (144)
T ss_pred hHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999998888777666667777778888888776654 1223889999999988777777655555532 4
Q ss_pred HHHHHhhcccccCCchhhh
Q psy9057 86 ISELFKIAPHVLFPEDEVY 104 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (279)
+.-.|.|. ++|.|+|.+-
T Consensus 83 Lrnif~IP-~~llp~~~~~ 100 (144)
T PF05859_consen 83 LRNIFSIP-EDLLPEDWIR 100 (144)
T ss_pred HhccccCC-hhhcchhhhc
Confidence 66778886 7777987764
No 17
>PTZ00184 calmodulin; Provisional
Probab=87.45 E-value=3.6 Score=32.09 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q psy9057 213 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGM 276 (279)
Q Consensus 213 kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gw 276 (279)
+.+...|..+ |++..+.|+.+....++..+|.+|.+..+-.+.-.+....-|.++.++|+..|
T Consensus 11 ~~~~~~F~~~-D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 73 (149)
T PTZ00184 11 AEFKEAFSLF-DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLM 73 (149)
T ss_pred HHHHHHHHHH-cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHH
Confidence 3444455443 33333456666666666666665555444444444544455666666666544
No 18
>KOG3763|consensus
Probab=85.54 E-value=0.72 Score=47.94 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccCCc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNPS 200 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~nP~ 200 (279)
.++|--|+..||...+=+..||+.++||.+.|+..|-+...
T Consensus 536 ~e~l~~~~~~tGln~~~s~~c~e~~nWdy~~A~k~F~~~ks 576 (585)
T KOG3763|consen 536 DEKLLKFQEETGLNSEWSTMCLEQNNWDYERALKLFIELKS 576 (585)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHccCCHHHHHHHHHHhhc
Confidence 56788999999999999999999999999999999986543
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=85.10 E-value=4.1 Score=31.77 Aligned_cols=66 Identities=8% Similarity=0.165 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCC-CCCccCHHHHHHHHhh---cCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 213 KKLESLYSKYKDAS-EPDKILVEGIMKFLDD---LSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 213 kkLeaLFDkYkDpd-dpD~IgiDGiirlcED---LGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
..|.++|.+|...+ +.+.|+.+.+.+++.. +|..+.+-.+--+-..+....-|.|+-++|+.=|..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 35778999998633 3579999999999974 787776665555666677778899999999875543
No 20
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=84.63 E-value=1.3 Score=37.64 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcc
Q psy9057 161 DKVKRFISFTQTGELTAINCLSQNDWKLDLASD 193 (279)
Q Consensus 161 elVrQF~sITGASek~A~qyLkaanWdLE~Avd 193 (279)
+-|.-.++-||+|.+.|+..|+.+|||+-.|+-
T Consensus 80 eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 80 DDIELVMKQCNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 457777889999999999999999999999874
No 21
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=84.56 E-value=1.3 Score=37.47 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASD 193 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~Avd 193 (279)
.+-|.-.++-||+|.+.|+..|+.+|||+-.|+-
T Consensus 77 ~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~ 110 (115)
T PRK06369 77 EEDIELVAEQTGVSEEEARKALEEANGDLAEAIL 110 (115)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHH
Confidence 3557778899999999999999999999999975
No 22
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=84.12 E-value=3.3 Score=31.96 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCC-CCCccCHHHHHHHHh-hcCCCCC----cHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 213 KKLESLYSKYKDAS-EPDKILVEGIMKFLD-DLSLSPE----SKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 213 kkLeaLFDkYkDpd-dpD~IgiDGiirlcE-DLGVdPE----Dvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
..|..+|.+|...+ +.+.|+.+.+..++. .+|-.+. +..+--+-..+....-|.|+-++|+..+..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 35778899999764 357899999999997 4443332 333334444556667799999999988764
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=80.69 E-value=5.5 Score=30.66 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 212 ~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
.+.+...|..|- .+..+.|+.+.+.+++..+|++.+.+.-+. -.+....-|.|+.++|+..|..
T Consensus 9 ~~~l~~~F~~~D-~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLD-KNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhC-CCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHH
Confidence 456777888764 333478999999999999998766555433 2345566799999999998753
No 24
>PTZ00183 centrin; Provisional
Probab=80.02 E-value=14 Score=29.40 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q psy9057 213 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGM 276 (279)
Q Consensus 213 kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gw 276 (279)
+++..+|..+ |++....|+.+-+..++..+|..+....+-.+--.+....-|.++.++|+..+
T Consensus 17 ~~~~~~F~~~-D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 79 (158)
T PTZ00183 17 KEIREAFDLF-DTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIM 79 (158)
T ss_pred HHHHHHHHHh-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 3455555443 33334566666666666666665554444444444444555666666666554
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=78.70 E-value=9.1 Score=26.83 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCc-HHHHHH---HHhhCccccccccHHHHHHhh
Q psy9057 214 KLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPES-KLVLII---AWRFKAAAQCEFSRDEFMNGM 276 (279)
Q Consensus 214 kLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPED-vv~LVL---AwkL~A~sMGeFTReEFv~Gw 276 (279)
+|.++|+.|=. +..+.|+.+-+.+++..++..+.+ ..--.+ -..+-...-|.|+.+||++-|
T Consensus 1 ~l~~~F~~~D~-d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDK-DGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHST-TSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcC-CccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46788888743 345799999999999999987622 222222 234445566999999999754
No 26
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=75.57 E-value=2.6 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=25.9
Q ss_pred hhCCCHHHHHHHHHhCCCchhhhcccccc
Q psy9057 169 FTQTGELTAINCLSQNDWKLDLASDNYFQ 197 (279)
Q Consensus 169 ITGASek~A~qyLkaanWdLE~AvdaFF~ 197 (279)
+-+.++...+.+|.+++++++.|++....
T Consensus 13 FP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 13 FPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56789999999999999999999998764
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=72.89 E-value=15 Score=27.52 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCC-CCCCccCHHHHHHHHhh-cCCCC----CcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 212 RKKLESLYSKYKDA-SEPDKILVEGIMKFLDD-LSLSP----ESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 212 ~kkLeaLFDkYkDp-ddpD~IgiDGiirlcED-LGVdP----EDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
.+.+...|..|-.. ++.+.|+.+.+.+++.. +|..+ ....+=-+-..+....-|.|+-++|+..|..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 34567778888552 34578999999999976 56433 2344444444567777899999999988754
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=70.42 E-value=23 Score=26.98 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCCC-ccCHHHHHHHHhh-cCC----CCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 213 KKLESLYSKYKDASEPD-KILVEGIMKFLDD-LSL----SPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 213 kkLeaLFDkYkDpddpD-~IgiDGiirlcED-LGV----dPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
..|.+.|+.|-|.+... .|+.+-+..++.. +|. .|....+=-+-..+....-|.|+-++|+.-+..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 56788899996444456 5999999999975 553 455454555555667778899999999876543
No 29
>KOG4351|consensus
Probab=69.50 E-value=2 Score=40.56 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=39.5
Q ss_pred ccCCcchHHHHHHHHhhhCC--CH-HHHHHHHHhCCCchhhhccccccCC
Q psy9057 153 HKLKSSQKDKVKRFISFTQT--GE-LTAINCLSQNDWKLDLASDNYFQNP 199 (279)
Q Consensus 153 ~kLss~QkelVrQF~sITGA--Se-k~A~qyLkaanWdLE~AvdaFF~nP 199 (279)
.+-+.++..+|.+|..+++. .+ ..|++||+-.||+|..|+..||+..
T Consensus 17 ~~tt~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~ 66 (244)
T KOG4351|consen 17 PMTTTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQD 66 (244)
T ss_pred CCCCCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCC
Confidence 45556678899999999875 45 5699999999999999999999764
No 30
>CHL00098 tsf elongation factor Ts
Probab=68.85 E-value=5.7 Score=36.10 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=32.7
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccc
Q psy9057 161 DKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYF 196 (279)
Q Consensus 161 elVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF 196 (279)
++|.+....||++--.+.+.|..++||++.|++--=
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr 38 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLR 38 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 579999999999999999999999999999996543
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=68.49 E-value=26 Score=27.25 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCCCC-ccCHHHHHHHHhh-c----CCCCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 214 KLESLYSKYKDASEPD-KILVEGIMKFLDD-L----SLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 214 kLeaLFDkYkDpddpD-~IgiDGiirlcED-L----GVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
.+...|.+|.+.++.. .|+.+-+..++.. + +-.+.+..+=-+...+....=|.|+-+||+.=+..
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 4455599999765544 6999999999976 3 33334445555666677777799999999875543
No 32
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=68.32 E-value=6 Score=35.82 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcccc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNY 195 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~AvdaF 195 (279)
.++|.+....||++--.+.+.|..++||++.|++--
T Consensus 5 a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~l 40 (198)
T PRK12332 5 AKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWL 40 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 367999999999999999999999999999998755
No 33
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=67.99 E-value=8.5 Score=24.06 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHh-hcC
Q psy9057 214 KLESLYSKYKDASEPDKILVEGIMKFLD-DLS 244 (279)
Q Consensus 214 kLeaLFDkYkDpddpD~IgiDGiirlcE-DLG 244 (279)
++.++|+.| |.+..+.|+.+-+...+. .||
T Consensus 1 ~l~~~F~~~-D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMF-DKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH--TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHH-CCCCCCcCcHHHHHHHHHHhcC
Confidence 367788888 444457899999999888 676
No 34
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=66.67 E-value=6.4 Score=37.65 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYF 196 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF 196 (279)
.++|.+.+..||++--.+.+.|..++||++.|++--=
T Consensus 5 a~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LR 41 (290)
T TIGR00116 5 AQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLR 41 (290)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4679999999999999999999999999999997553
No 35
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=66.24 E-value=9.4 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=28.1
Q ss_pred HHHHHHHhh-hCCCHHHHHHHHHhCCCchhhhccccc
Q psy9057 161 DKVKRFISF-TQTGELTAINCLSQNDWKLDLASDNYF 196 (279)
Q Consensus 161 elVrQF~sI-TGASek~A~qyLkaanWdLE~AvdaFF 196 (279)
+.|++..++ -+.++..-..+|.+++|+++.|++...
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL 39 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALL 39 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456666665 456888899999999999999998754
No 36
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=65.16 E-value=5.7 Score=34.10 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=28.7
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCCchhhhccc
Q psy9057 162 KVKRFISFTQTGELTAINCLSQNDWKLDLASDN 194 (279)
Q Consensus 162 lVrQF~sITGASek~A~qyLkaanWdLE~Avda 194 (279)
-|.=-++=||+|.++|+..|+.+|+||-.|+-.
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 356667889999999999999999999999753
No 37
>PRK09377 tsf elongation factor Ts; Provisional
Probab=64.18 E-value=7.7 Score=37.14 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYF 196 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF 196 (279)
.++|.+.+..||++--.+.+.|..++||++.|++--=
T Consensus 6 ~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lr 42 (290)
T PRK09377 6 AALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLR 42 (290)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5689999999999999999999999999999998654
No 38
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=63.79 E-value=34 Score=26.68 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCCCC-ccCHHHHHHHHhh-----cCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q psy9057 213 KKLESLYSKYKDASEPD-KILVEGIMKFLDD-----LSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGM 276 (279)
Q Consensus 213 kkLeaLFDkYkDpddpD-~IgiDGiirlcED-----LGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gw 276 (279)
..|...|..|.+.+... .|+.+.+..++.. +|-.++.-.+=-+-..+....-|.|+-++|+.=+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 35778899996433345 5999999999999 9977654434444445577778999999998644
No 39
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=63.08 E-value=33 Score=30.44 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 211 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 211 ~~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
.+.+|...|.-|=... ...|+..-+.+.+.-||-+..+-.+=-|-..+-...-|+|+.++|+++|..
T Consensus 90 ~~Eel~~aF~~fD~d~-dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDH-DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCC-CceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 4678888898886543 479999999999999999998877777767676667899999999998863
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=63.03 E-value=37 Score=26.58 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCC-CCccCHHHHHHHHhhc-----CCCCCcHHHHHHHHhhCccccccccHHHHHHhhh
Q psy9057 213 KKLESLYSKYKDASE-PDKILVEGIMKFLDDL-----SLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 277 (279)
Q Consensus 213 kkLeaLFDkYkDpdd-pD~IgiDGiirlcEDL-----GVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk 277 (279)
..|..+|.+|.+.++ ...|+.+.+..++..- +-..++..+--+-..+..-.=|.|+-+||+.=+.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 467889999987654 3489999999999765 2222223333344455666679999999987543
No 41
>KOG0036|consensus
Probab=59.89 E-value=23 Score=36.31 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q psy9057 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGM 276 (279)
Q Consensus 212 ~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gw 276 (279)
+.+|-.+|.+-.-.. ...|++..+.++|.|+|+++.|-..--+-+++--..-+.|..+||.+-+
T Consensus 81 E~~l~~~F~~iD~~h-dG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEH-DGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHHHHHHhhhcccc-CCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 345566666644322 3689999999999999999999887777777777777889999987643
No 42
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=58.92 E-value=53 Score=27.22 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhh
Q psy9057 211 DRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGM 276 (279)
Q Consensus 211 ~~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gw 276 (279)
...+|.-.|.+| |.+..+.|+.+-+..++ +.|....+--+-..+-+-.=|.||.+||..++
T Consensus 46 ~~~~l~w~F~~l-D~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQL-DGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHH-CCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456788899998 54445789999988877 44544444445556667777999999999886
No 43
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=57.97 E-value=59 Score=28.83 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=56.5
Q ss_pred CccCHHHHHHHHHHhc--CCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhh
Q psy9057 208 SSVDRKKLESLYSKYK--DASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 277 (279)
Q Consensus 208 ~s~~~kkLeaLFDkYk--DpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk 277 (279)
...++..+.+|.+.|. |++..+.|+-+-+..+...||.+|.+..+.=|-.-+.+ .-|.++-.+|+..|.
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms 82 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMS 82 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHH
Confidence 3446778888888887 66556789999999999999999999888888888888 668888888887764
No 44
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=57.64 E-value=5.9 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=11.3
Q ss_pred ccccccHHHHHHhhhcC
Q psy9057 263 AQCEFSRDEFMNGMLEL 279 (279)
Q Consensus 263 sMGeFTReEFv~Gwk~L 279 (279)
.=|.|+.+||+.++++|
T Consensus 13 ~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 13 GDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp SSSEEEHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhC
Confidence 34677777777777654
No 45
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=55.66 E-value=33 Score=25.55 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHhhc----CCCCCcHHHHHHHHhhC--ccccccccHHHHHHhh
Q psy9057 214 KLESLYSKYKDASEPDKILVEGIMKFLDDL----SLSPESKLVLIIAWRFK--AAAQCEFSRDEFMNGM 276 (279)
Q Consensus 214 kLeaLFDkYkDpddpD~IgiDGiirlcEDL----GVdPEDvv~LVLAwkL~--A~sMGeFTReEFv~Gw 276 (279)
.|..+|.+|.+ +...|+++.+.+|+.+= .++++.+.-++--+.-. ....+.+|.++|+.=+
T Consensus 1 ei~~if~~ys~--~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS--DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT--TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 36789999987 34689999999999533 33444454444333211 2246999999998755
No 46
>KOG2756|consensus
Probab=54.84 E-value=8.1 Score=37.85 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=36.1
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccCC
Q psy9057 161 DKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 199 (279)
Q Consensus 161 elVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~nP 199 (279)
+++-+|-.+|.+.+..|..+|..++|++..|++.||.+.
T Consensus 27 ~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 27 LLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 678899999999999999999999999999999999753
No 47
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=52.47 E-value=29 Score=31.95 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=27.2
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCchhhhc
Q psy9057 163 VKRFISFTQTGELTAINCLSQNDWKLDLAS 192 (279)
Q Consensus 163 VrQF~sITGASek~A~qyLkaanWdLE~Av 192 (279)
++=.+.+||++..+|...|.+++|++-.|+
T Consensus 226 ~~i~~~~~~~~~~~a~~~l~~~~~~~k~a~ 255 (257)
T cd05007 226 IRIVMEATGVSRDEAEAALEQAGGDVKTAI 255 (257)
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCCceeee
Confidence 555889999999999999999999998886
No 48
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=49.92 E-value=7 Score=38.16 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=48.5
Q ss_pred HHhhhCCCHHHHHHHHHhCCCchhhhccccccCCcccccccCCccCHHHHHHHHHHh--cCCCC-------CCccCHHHH
Q psy9057 166 FISFTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKY--KDASE-------PDKILVEGI 236 (279)
Q Consensus 166 F~sITGASek~A~qyLkaanWdLE~AvdaFF~nP~~~~~ss~~s~~~kkLeaLFDkY--kDpdd-------pD~IgiDGi 236 (279)
|+.++-..+..|--.=+.++|.|. .+.||.-.++-.|. -.-. =+.||+++ +|..| .+.+-++-+
T Consensus 75 ~V~V~td~P~iAcLgSQ~AGW~l~--~~~ffamGSGPaRA---la~k--pe~ly~~l~Y~d~~~~avl~lE~~~lP~~~v 147 (312)
T TIGR03120 75 AVQVTTDHPVIACLGSQKAGWQVK--VGKYFAMGSGPARA---LALK--PKETYEEIGYEDDSDVAVIVLESDKLPDEEV 147 (312)
T ss_pred eEEEEeCcHHHHHhhccccCcccc--cCCEeEecCchHHH---hhcC--cHHHHHHhCCcccCceEEEEEecCCCCCHHH
Confidence 555555555555444466999998 88899776542211 1000 14677764 45432 133444444
Q ss_pred -HHHHhhcCCCCCcHHHHH
Q psy9057 237 -MKFLDDLSLSPESKLVLI 254 (279)
Q Consensus 237 -irlcEDLGVdPEDvv~LV 254 (279)
.+..++.||+|+++.+++
T Consensus 148 ~~~vA~~cgv~p~~l~~lv 166 (312)
T TIGR03120 148 AEYIADECGVDPENLTLLV 166 (312)
T ss_pred HHHHHHHcCCCHHHEEEEE
Confidence 455599999999987654
No 49
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=49.06 E-value=13 Score=26.01 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHhCCCchhhhcccc
Q psy9057 171 QTGELTAINCLSQNDWKLDLASDNY 195 (279)
Q Consensus 171 GASek~A~qyLkaanWdLE~AvdaF 195 (279)
..++..-.+||.+.+||++.|...+
T Consensus 28 ~~~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 28 DHDDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp S-SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 3477889999999999999998643
No 50
>KOG1071|consensus
Probab=47.54 E-value=22 Score=35.18 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=34.0
Q ss_pred cchHHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcc
Q psy9057 157 SSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASD 193 (279)
Q Consensus 157 s~QkelVrQF~sITGASek~A~qyLkaanWdLE~Avd 193 (279)
+.++++|.+..+=||++-....+.|..+||||..|..
T Consensus 44 ~~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 44 ASSKALLKKLREKTGASMVNCKKALEECGGDLVLAEE 80 (340)
T ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHH
Confidence 3588999999999999999999999999999998754
No 51
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=47.11 E-value=92 Score=24.56 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHhh-cCCCCCc-HHHHHHHHhhCccccccccHHHHHHhhh
Q psy9057 213 KKLESLYSKYKDASEPDKILVEGIMKFLDD-LSLSPES-KLVLIIAWRFKAAAQCEFSRDEFMNGML 277 (279)
Q Consensus 213 kkLeaLFDkYkDpddpD~IgiDGiirlcED-LGVdPED-vv~LVLAwkL~A~sMGeFTReEFv~Gwk 277 (279)
..|...|..|...++.+.|+.+.+..++.. ||-...+ -.+=-+-..+....=|.|+-+||+.=+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 456778999864244579999999999988 9854444 3333444556666779999999987554
No 52
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=44.93 E-value=9 Score=37.43 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=48.1
Q ss_pred HHhhhCCCHHHHHHHHHhCCCchhhhccccccCCcccccccCCccCHHHHHHHHHHh--cCCCC-------CCccCHHH-
Q psy9057 166 FISFTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKY--KDASE-------PDKILVEG- 235 (279)
Q Consensus 166 F~sITGASek~A~qyLkaanWdLE~AvdaFF~nP~~~~~ss~~s~~~kkLeaLFDkY--kDpdd-------pD~IgiDG- 235 (279)
|+.++-..+..|--.=+.++|.|. .+.||.-.++-.|. -.- +=+.||+++ +|..+ .+.+-++-
T Consensus 75 ~v~V~td~P~iAcLgSQ~AGW~l~--~~~ffamGSGPaRA---la~--kpe~ly~~l~Y~D~~~~avl~lE~~~lP~~~v 147 (312)
T cd00545 75 TVEVHTDNPVIACLGSQYAGWSLS--VGDFFALGSGPARA---LAL--KPEELYEEIGYRDDAEVAVLVLESDKLPPEEV 147 (312)
T ss_pred eEEEEeCcHHHHHhcccccCcccc--cCCEeEecCchHHH---hhc--CcHHHHHHhCCccccceEEEEEecCCCCCHHH
Confidence 555555555555444466999998 78899766542211 100 114677764 45432 13344444
Q ss_pred HHHHHhhcCCCCCcHHHHH
Q psy9057 236 IMKFLDDLSLSPESKLVLI 254 (279)
Q Consensus 236 iirlcEDLGVdPEDvv~LV 254 (279)
+.+..++.||+|+++.+++
T Consensus 148 ~~~vA~~cgv~p~~l~~lv 166 (312)
T cd00545 148 AEKVAAECGVDPENVTLIV 166 (312)
T ss_pred HHHHHHHcCCCHHHEEEEE
Confidence 4555699999999987654
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=44.29 E-value=69 Score=24.74 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=47.9
Q ss_pred CCCCCCccCHHHHHHHHhhcCC-CCCcHHHHHHHHhhCcccc-ccccHHHHHHhhhc
Q psy9057 224 DASEPDKILVEGIMKFLDDLSL-SPESKLVLIIAWRFKAAAQ-CEFSRDEFMNGMLE 278 (279)
Q Consensus 224 DpddpD~IgiDGiirlcEDLGV-dPEDvv~LVLAwkL~A~sM-GeFTReEFv~Gwk~ 278 (279)
|++..+.|-+.-+..|+..+|- +|+|-.+=-|+..+-...- |.+.++.|..-|+.
T Consensus 8 D~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 8 DTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4444568889999999999999 9999999999999988888 99999999988763
No 54
>KOG0418|consensus
Probab=43.90 E-value=30 Score=32.06 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=36.6
Q ss_pred cCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcccccc
Q psy9057 154 KLKSSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQ 197 (279)
Q Consensus 154 kLss~QkelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~ 197 (279)
.....++.+|..++++ |.++..|+..|...+|+++.|....++
T Consensus 157 ~~~~~~~~~v~~l~~m-Gf~~~~~i~~L~~~~w~~~~a~~~~~s 199 (200)
T KOG0418|consen 157 PDDPWDKKKVDSLIEM-GFSELEAILVLSGSDWNLADATEQLLS 199 (200)
T ss_pred CCCchhHHHHHHHHHh-cccHHHHHHHhhccccchhhhhHhhcc
Confidence 4566788889999886 889999999999999999999877653
No 55
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=41.24 E-value=9 Score=37.49 Aligned_cols=81 Identities=23% Similarity=0.439 Sum_probs=48.9
Q ss_pred HHhhhCCCHHHHHHHHHhCCCchhhhccccccCCcccccccCCccCHHHHHHHHHH--hcCCCC-------CCccCHHHH
Q psy9057 166 FISFTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSK--YKDASE-------PDKILVEGI 236 (279)
Q Consensus 166 F~sITGASek~A~qyLkaanWdLE~AvdaFF~nP~~~~~ss~~s~~~kkLeaLFDk--YkDpdd-------pD~IgiDGi 236 (279)
|+.++-..+..|--.=+.++|.|.. +.||.-.++-. |.- . .+ +.||++ |+|..+ .+.+-++-+
T Consensus 77 ~V~V~td~P~iAcLgSQ~AGW~l~~--~~ffa~GSGPa---RAl-a-~k-e~l~~~l~Y~D~~~~avl~lE~~~lP~~~v 148 (317)
T PRK02264 77 FVEVSTDHPALACLGSQKAGWSLSV--GKFFALGSGPA---RAL-A-LK-EELYEELGYRDDADFAVLVLESDKLPPEEV 148 (317)
T ss_pred eEEEEcCchHHHHHhccccCccccc--CCEeeecCcHH---HHH-h-hh-hHHHHHhCCccccCeEEEEEecCCCCCHHH
Confidence 4555555555554444679999984 88997665422 111 1 12 678886 555432 134444444
Q ss_pred -HHHHhhcCCCCCcHHHHH
Q psy9057 237 -MKFLDDLSLSPESKLVLI 254 (279)
Q Consensus 237 -irlcEDLGVdPEDvv~LV 254 (279)
.+..++.||+|+++.+++
T Consensus 149 ~e~vA~~cgv~p~~v~~lv 167 (317)
T PRK02264 149 AEKVAEECGVDPENVYLLV 167 (317)
T ss_pred HHHHHHHcCCCHHHEEEEE
Confidence 455599999999987654
No 56
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=40.94 E-value=1e+02 Score=25.11 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccCCcccccccCCccCHHHHHHHHHHhcCCCCCCccCHHHHHH
Q psy9057 159 QKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKYKDASEPDKILVEGIMK 238 (279)
Q Consensus 159 QkelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~nP~~~~~ss~~s~~~kkLeaLFDkYkDpddpD~IgiDGiir 238 (279)
..+++..|+..||+++..=+.-.. ++.=|..+-|-+-.. | .=++.
T Consensus 20 d~e~l~rFLa~TG~~p~~LR~~a~----------------------------dp~FL~~VLdFl~~d-e------~~l~a 64 (88)
T PF12096_consen 20 DPERLPRFLALTGLSPDDLRAAAG----------------------------DPAFLAAVLDFLLMD-E------AWLLA 64 (88)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHcc----------------------------ChHHHHHHHHHHHcc-h------HHHHH
Confidence 367899999999999987554221 233444455555442 2 25889
Q ss_pred HHhhcCCCCCcHH
Q psy9057 239 FLDDLSLSPESKL 251 (279)
Q Consensus 239 lcEDLGVdPEDvv 251 (279)
||+..|++|+.+.
T Consensus 65 f~~a~~~~p~~v~ 77 (88)
T PF12096_consen 65 FCDAAGIPPEAVA 77 (88)
T ss_pred HHHHcCcChhHHH
Confidence 9999999998654
No 57
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=40.33 E-value=68 Score=27.52 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=42.6
Q ss_pred HHHHHHHhcCC--CCCCccCHHHHHHHHhhcCCCCCc---HHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 215 LESLYSKYKDA--SEPDKILVEGIMKFLDDLSLSPES---KLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 215 LeaLFDkYkDp--ddpD~IgiDGiirlcEDLGVdPED---vv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
|+++|..|+.- .+...|+..-..++|.|.||=... ..+=++-.+++++.-..|+-++|+..+..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 67889999532 123689999999999999984322 22223334567777667999999988754
No 58
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=39.63 E-value=36 Score=32.11 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=30.6
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCchhhhcccccc
Q psy9057 163 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQ 197 (279)
Q Consensus 163 VrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~ 197 (279)
++=.+.+||++..+|.+.|.+++|++-.|+-.--.
T Consensus 239 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~~~ 273 (299)
T PRK05441 239 VRIVMEATGVSREEAEAALEAADGSVKLAIVMILT 273 (299)
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 55589999999999999999999999999876543
No 59
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=37.46 E-value=89 Score=27.65 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=63.2
Q ss_pred cCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCc-hhhhccccccCCcccccccCCccCHHHHHHHHHHhcCCCC-----
Q psy9057 154 KLKSSQKDKVKRFISFTQTGELTAINCLSQNDWK-LDLASDNYFQNPSAYYKEQKSSVDRKKLESLYSKYKDASE----- 227 (279)
Q Consensus 154 kLss~QkelVrQF~sITGASek~A~qyLkaanWd-LE~AvdaFF~nP~~~~~ss~~s~~~kkLeaLFDkYkDpdd----- 227 (279)
..+...++....+..+.|..+++|...|+..+.+ +..|+.. .++.. . ..-++..++..+++...+++...
T Consensus 63 F~~~~ek~~f~~L~~i~GIGpk~A~~il~~fg~~~l~~~i~~--~d~~~-L-~~v~Gig~k~A~~I~~~l~~~~~~~~~~ 138 (192)
T PRK00116 63 FLTKEERELFRLLISVSGVGPKLALAILSGLSPEELVQAIAN--GDVKA-L-TKVPGIGKKTAERIVLELKDKLAAAASA 138 (192)
T ss_pred cCCHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHh--CCHHH-H-HhCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 3466667778899999999999999999887742 2222221 11110 0 11234566777777777764321
Q ss_pred -----CCccCHHHHHHHHhhcCCCCCcHHHHHHHHh
Q psy9057 228 -----PDKILVEGIMKFLDDLSLSPESKLVLIIAWR 258 (279)
Q Consensus 228 -----pD~IgiDGiirlcEDLGVdPEDvv~LVLAwk 258 (279)
+..-..+.++..+..||+++..+...+=.+.
T Consensus 139 ~~~~~~~~~~~~ev~~aL~~LG~~~~~a~~~~~~~~ 174 (192)
T PRK00116 139 AAAAAAASSALEEAVSALVALGYKPKEASKAVAKIL 174 (192)
T ss_pred ccccccccchHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 0011257889999999999987776665443
No 60
>KOG0027|consensus
Probab=37.38 E-value=1.9e+02 Score=23.90 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhh
Q psy9057 212 RKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 277 (279)
Q Consensus 212 ~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk 277 (279)
...+...|..+--.. ...|..+-+-.....||..|....+-.+-..+....-|.|..++|+.=+.
T Consensus 7 ~~el~~~F~~fD~d~-~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~ 71 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDG-DGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLME 71 (151)
T ss_pred HHHHHHHHHHHCCCC-CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 356677777774322 36888888999999999999888888888888888889999999987543
No 61
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=37.33 E-value=41 Score=31.85 Aligned_cols=34 Identities=21% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCchhhhccccc
Q psy9057 163 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYF 196 (279)
Q Consensus 163 VrQF~sITGASek~A~qyLkaanWdLE~AvdaFF 196 (279)
++=.+.+||++..+|...|.+++|.+-.|+-.--
T Consensus 234 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~ 267 (291)
T TIGR00274 234 VRIVRQATDCNKELAEQTLLAADQNVKLAIVMIL 267 (291)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4458899999999999999999999999887544
No 62
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=36.64 E-value=41 Score=30.46 Aligned_cols=60 Identities=27% Similarity=0.518 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHhhhccCCchhhhhhcHHHHHhhcccccCCchhhhhccCcCCCCChhHHHHHHHhhhhhhhHHHH
Q psy9057 60 LEKCMQKFKDTFQNNLKGPLEEFNTSISELFKIAPHVLFPEDEVYRNYSEDSSNNIDEEVKELENNYRKTQLLTI 134 (279)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (279)
|.+-+..-+-.....+.+|+.+|..-+.++-++. .+.++.||+.|++.|+.-|.-..-+|
T Consensus 54 l~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i---------------~~~~~~I~~~ik~~Ee~~k~~k~~~i 113 (215)
T PF07083_consen 54 LKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPI---------------DEASDKIDEQIKEFEEKEKEEKREKI 113 (215)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455567788999999999999987542 34578899999999998876554443
No 63
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=36.62 E-value=3e+02 Score=24.24 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=23.8
Q ss_pred CCCCcHHHHHHHHhh-----Ccccc-ccccHHHHHHhhh
Q psy9057 245 LSPESKLVLIIAWRF-----KAAAQ-CEFSRDEFMNGML 277 (279)
Q Consensus 245 VdPEDvv~LVLAwkL-----~A~sM-GeFTReEFv~Gwk 277 (279)
.+++.+-+|+-|..| +.+.+ ..+|+++|++-.+
T Consensus 122 ~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 122 SSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred CChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 367777777777754 55555 6899999998654
No 64
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=36.55 E-value=23 Score=29.22 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccCC
Q psy9057 163 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQNP 199 (279)
Q Consensus 163 VrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~nP 199 (279)
+..+.++.|.+++++.+++++.||.++.+...|-.+|
T Consensus 100 ~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~~ 136 (143)
T PF10075_consen 100 LSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPNP 136 (143)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---H
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecCC
Confidence 5667778888899999999999999997777665444
No 65
>PLN02964 phosphatidylserine decarboxylase
Probab=36.24 E-value=2.1e+02 Score=30.60 Aligned_cols=63 Identities=6% Similarity=-0.029 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhhc
Q psy9057 215 LESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGMLE 278 (279)
Q Consensus 215 LeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk~ 278 (279)
+..+|..+ |.+..+.|+.+-.+.++..+|-.+.+-.+.-+-..+....-|.||.+||.+-|+.
T Consensus 181 i~~mf~~~-D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIV-DYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHh-CCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 67788876 5555578888888888888875443333333334455555688888888876653
No 66
>KOG1733|consensus
Probab=35.36 E-value=65 Score=26.86 Aligned_cols=38 Identities=32% Similarity=0.604 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHhhh----h-------hHhhhHHHHHHHHhHHHhhh
Q psy9057 36 LNSNIKALQKKLSEKCK----T-------DQHKQNLEKCMQKFKDTFQN 73 (279)
Q Consensus 36 ~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~ 73 (279)
--.|...|-.|++|||- | ...++-+.+||.+|-|.+..
T Consensus 31 AvAnAqeLv~kisekCf~KCit~PGssl~~~e~~Cis~CmdRyMdawni 79 (97)
T KOG1733|consen 31 AVANAQELVSKISEKCFDKCITKPGSSLDSSEKSCISRCMDRYMDAWNI 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccCcchHHHHHHHHHHHHHHHHH
Confidence 34566778888888873 2 23577899999999987643
No 67
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=34.63 E-value=47 Score=31.42 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCchhhhcccccc
Q psy9057 163 VKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQ 197 (279)
Q Consensus 163 VrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~ 197 (279)
++=.+.+||++..+|...|.+++|.+-.|+-..-.
T Consensus 235 ~~i~~~~~~~~~~~a~~~l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 235 VRIVMQATGCSEDEAKELLKESDNDVKLAILMILT 269 (296)
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCccHHHHHHHHh
Confidence 45588999999999999999999999999876543
No 68
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=33.29 E-value=90 Score=32.12 Aligned_cols=51 Identities=24% Similarity=0.489 Sum_probs=41.1
Q ss_pred chhhhHHHHHHHHHhhhhHHHHHHHHHH-hhhhhHhhhHHHHHHHHhHHHhh
Q psy9057 22 LTVQQDFERKLISLLNSNIKALQKKLSE-KCKTDQHKQNLEKCMQKFKDTFQ 72 (279)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 72 (279)
+.--.+|++.++..++++.+.+-+++.+ +.-+++-++.|..|+++|+..|+
T Consensus 449 ~~~i~~~~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~L~~~i~~~~~~f~ 500 (501)
T TIGR00962 449 VDKVRKFEQELLDYLDANHPDILEEINTKKKLTEELEDKLKEALKNFKKTFA 500 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3334689999999999999888888854 45667778899999999998875
No 69
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=33.23 E-value=1.6e+02 Score=26.79 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=48.0
Q ss_pred CCccCHHHHHHHHHHhcCCCCCCccCHHHHHHHHhh--cCCCC----CcHHHHHHHHhhCccccccccHHH
Q psy9057 207 KSSVDRKKLESLYSKYKDASEPDKILVEGIMKFLDD--LSLSP----ESKLVLIIAWRFKAAAQCEFSRDE 271 (279)
Q Consensus 207 ~~s~~~kkLeaLFDkYkDpddpD~IgiDGiirlcED--LGVdP----EDvv~LVLAwkL~A~sMGeFTReE 271 (279)
.+...+.+.+++|.+|+.. .||.+...-+.++... .=.|| ....-..+.|.|-.+.-|...|+.
T Consensus 90 eGrFvp~kFe~iF~kya~~-~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~ 159 (174)
T PF05042_consen 90 EGRFVPQKFEEIFSKYAKT-GPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKED 159 (174)
T ss_pred CCcCCHHHHHHHHHHhCCC-CCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHH
Confidence 4566789999999999864 3678999989888865 33444 234556777888888889888775
No 70
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=33.20 E-value=26 Score=24.58 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHH
Q psy9057 210 VDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKL 251 (279)
Q Consensus 210 ~~~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv 251 (279)
.+...+.+++..- ...+..+-+.++|..||++|+++.
T Consensus 22 is~~tl~~~~~~~-----~~~~~~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 22 ISRSTLSRILNGK-----PSNPSLDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp --HHHHHHHHTTT----------HHHHHHHHHHHT--HHHCT
T ss_pred cCHHHHHHHHhcc-----cccccHHHHHHHHHHcCCCHHHHh
Confidence 3455666665521 246889999999999999998753
No 71
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.69 E-value=2.2e+02 Score=28.35 Aligned_cols=93 Identities=26% Similarity=0.379 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHHhhhhH---HHHHHHHHHhhhhhHhhhHHHHHHHHhHHHhhhccCCchhhhhhcHHHHHhhcccccCC
Q psy9057 23 TVQQDFERKLISLLNSNI---KALQKKLSEKCKTDQHKQNLEKCMQKFKDTFQNNLKGPLEEFNTSISELFKIAPHVLFP 99 (279)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (279)
.-.-.|-|.|-.+|++++ .|| ..+.+.|...++++ ++....+.... -.|+|+.++-.|++ ||
T Consensus 58 ~~l~~f~~qLa~Ll~aG~pL~~aL-~~l~~q~~~~~~~~----~l~~i~~~l~~---------G~sls~al~~~~~~-F~ 122 (397)
T COG1459 58 KDLALFTRQLATLLKAGLPLYEAL-EILADQAPNPKLKQ----VLTSILEELES---------GKSLSEALAQLPGV-FP 122 (397)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHH-HHHHHhCCCHHHHH----HHHHHHHHHHC---------CCcHHHHHHhCccc-CC
Confidence 344578899999999886 333 34556665544444 44444333322 35899999999986 88
Q ss_pred chhhhhccCcCCCCChhHHHHHHHhhhhhhh
Q psy9057 100 EDEVYRNYSEDSSNNIDEEVKELENNYRKTQ 130 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (279)
+..+.--+.-..+.|+++-..++...+.+.+
T Consensus 123 ~~~~~~v~~gE~~G~L~~~l~~la~y~e~~~ 153 (397)
T COG1459 123 DLYVAMVAAGERSGNLDEVLQRLAKYLEKQA 153 (397)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 8887777788889999999998887776654
No 72
>KOG0027|consensus
Probab=32.07 E-value=2.2e+02 Score=23.46 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcH----HHHHHHHh-hCccccccccHHHHHHhhhcC
Q psy9057 210 VDRKKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESK----LVLIIAWR-FKAAAQCEFSRDEFMNGMLEL 279 (279)
Q Consensus 210 ~~~kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDv----v~LVLAwk-L~A~sMGeFTReEFv~Gwk~L 279 (279)
+....+..+++++-.. ++..|+.+....++...+....+. ..+.=|+. +-....|.||.+++..-|+.|
T Consensus 41 ~t~~el~~~~~~~D~d-g~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLD-GDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred CCHHHHHHHHHHhCCC-CCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 3678999999997643 357899999999999888876643 36666664 445677999999998877653
No 73
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=31.24 E-value=35 Score=24.03 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=20.1
Q ss_pred hhhCCCHHHHHHHHHhCCCchhhhcc
Q psy9057 168 SFTQTGELTAINCLSQNDWKLDLASD 193 (279)
Q Consensus 168 sITGASek~A~qyLkaanWdLE~Avd 193 (279)
+++|.+..+|...|++++|.+...-.
T Consensus 5 d~~g~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp TTTTSBHHHHHHHHHHTT-EEEEEEE
T ss_pred CcCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 57899999999999999995554433
No 74
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=30.75 E-value=56 Score=31.86 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCchhhhcccccc
Q psy9057 160 KDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQ 197 (279)
Q Consensus 160 kelVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~ 197 (279)
-++|.+.++.||++--.+.+.|..++.|++.|++--=.
T Consensus 6 a~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~ 43 (296)
T COG0264 6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLRE 43 (296)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46799999999999999999999999999999986543
No 75
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=30.57 E-value=87 Score=24.14 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHhhhCC-CHHHHHHHHHhCCCchhhhccccccC
Q psy9057 156 KSSQKDKVKRFISFTQT-GELTAINCLSQNDWKLDLASDNYFQN 198 (279)
Q Consensus 156 ss~QkelVrQF~sITGA-Sek~A~qyLkaanWdLE~AvdaFF~n 198 (279)
.++-+..|+...++||+ |++.-...|..+|-|-+.|+..-...
T Consensus 2 P~~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 2 PAASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 34557789999999999 99999999999999999999877653
No 76
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=29.81 E-value=42 Score=25.22 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCC--CCC-CccCH
Q psy9057 212 RKKLESLYSKYKDA--SEP-DKILV 233 (279)
Q Consensus 212 ~kkLeaLFDkYkDp--ddp-D~Igi 233 (279)
.+.++.||+||..| +++ |.|++
T Consensus 15 k~~~e~I~~KY~~~d~~~~~DeIDL 39 (58)
T PF10384_consen 15 KSRWESIIEKYGQPDFEDQGDEIDL 39 (58)
T ss_dssp HHHHHHHHHHHCSG-TCCSSEBCTT
T ss_pred HHHHHHHHHHhcCcccCCccceeec
Confidence 46789999999986 333 66765
No 77
>PF13693 HTH_35: Winged helix-turn-helix DNA-binding; PDB: 1NEQ_A 1NER_A.
Probab=29.33 E-value=28 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=28.6
Q ss_pred HHHhhhccCCchhhhhhcHHHHHhhcccccCCch
Q psy9057 68 KDTFQNNLKGPLEEFNTSISELFKIAPHVLFPED 101 (279)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (279)
..|+.|-|..|-..-..-|.+...+.|+++||+-
T Consensus 29 ~~tl~nal~r~~pk~E~~IA~aLgv~P~eIWPsR 62 (78)
T PF13693_consen 29 SSTLRNALRRPWPKGERIIADALGVPPEEIWPSR 62 (78)
T ss_dssp HHHHHHTTTSS-HHHHHHHHHHTTS-HHHHSTTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHCcCHHHhCchh
Confidence 4688899999988888999999999999999974
No 78
>KOG0034|consensus
Probab=28.97 E-value=1.8e+02 Score=26.11 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=18.0
Q ss_pred cCHHHHHHHHhhcCCCCCcHHHHHHHHhhC-ccccccccHHHHHH
Q psy9057 231 ILVEGIMKFLDDLSLSPESKLVLIIAWRFK-AAAQCEFSRDEFMN 274 (279)
Q Consensus 231 IgiDGiirlcEDLGVdPEDvv~LVLAwkL~-A~sMGeFTReEFv~ 274 (279)
|+.+..++++.-.-..-..-.=+-+|..+= -...|.|+|+++..
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~ 128 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQ 128 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 555555555543332222222233333332 23335555555544
No 79
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=27.57 E-value=67 Score=23.23 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHHhhhCCCHHHHHHHHHh
Q psy9057 162 KVKRFISFTQTGELTAINCLSQ 183 (279)
Q Consensus 162 lVrQF~sITGASek~A~qyLka 183 (279)
.|.+|.+++|+|-+-|+.+|+-
T Consensus 12 tv~~~rd~lg~sRK~ai~lLE~ 33 (50)
T PF09107_consen 12 TVAEFRDLLGLSRKYAIPLLEY 33 (50)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHH
T ss_pred cHHHHHHHHCccHHHHHHHHHH
Confidence 4789999999999999999874
No 80
>PHA02629 A-type inclusion body protein; Provisional
Probab=27.30 E-value=67 Score=24.44 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHHhhh
Q psy9057 23 TVQQDFERKLISLLNS 38 (279)
Q Consensus 23 ~~~~~~~~~~~~~~~~ 38 (279)
+-.-|||||.|..|..
T Consensus 25 ~s~c~ferk~iavlea 40 (61)
T PHA02629 25 TSSCEFERKIIAVLEA 40 (61)
T ss_pred cchhHhhHHHHHHHHH
Confidence 4456899999988754
No 81
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=24.15 E-value=1.5e+02 Score=30.50 Aligned_cols=48 Identities=31% Similarity=0.510 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHH-hhhhhHhhhHHHHHHHHhHHHhh
Q psy9057 25 QQDFERKLISLLNSNIKALQKKLSE-KCKTDQHKQNLEKCMQKFKDTFQ 72 (279)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 72 (279)
-.+|+.+++..++++.+.+.+++.+ +.-+++-+..|..|+++|+..|+
T Consensus 453 i~~~~~~~~~~l~~~~~~~~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~ 501 (502)
T PRK09281 453 VRRFEAELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEFKKTFA 501 (502)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999998888854 44556667889999999987764
No 82
>KOG0028|consensus
Probab=24.10 E-value=3.4e+02 Score=24.82 Aligned_cols=63 Identities=16% Similarity=0.277 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHHHHhhh
Q psy9057 214 KLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEFMNGML 277 (279)
Q Consensus 214 kLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEFv~Gwk 277 (279)
++..-|+-+ +++..+.|+.+++--=.-.||.+|..-.++-|.--+....-|.|+-++|+.-|.
T Consensus 34 ~i~e~f~lf-d~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 34 EIKEAFELF-DPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred hHHHHHHhh-ccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 444444443 366668999999966667899999999988887777778889999999998764
No 83
>TIGR01395 FlgC flagellar basal-body rod protein FlgC. This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam model pfam00460. FlgC is part of the basal body.
Probab=23.32 E-value=1.5e+02 Score=24.75 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=38.5
Q ss_pred ccCcCCCCChhHHHHHHHhhhhhhhHHHHhhhhhhhHHHHHHHHh
Q psy9057 106 NYSEDSSNNIDEEVKELENNYRKTQLLTILAQGELKMLKEIECAM 150 (279)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (279)
.|-|.+.-++++|.-++-.|-|.-+..+-+-.+..+|++..+.|.
T Consensus 90 g~le~snVdl~~Em~~l~~n~~~Y~a~~~~i~~~~~~l~~ai~~~ 134 (135)
T TIGR01395 90 GYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIG 134 (135)
T ss_pred hhhhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666778999999999999999999999999999999888764
No 84
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=22.54 E-value=32 Score=33.46 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHhhCccccccccHHHH
Q psy9057 235 GIMKFLDDLSLSPESKLVLIIAWRFKAAAQCEFSRDEF 272 (279)
Q Consensus 235 GiirlcEDLGVdPEDvv~LVLAwkL~A~sMGeFTReEF 272 (279)
=+..+|.++|+|.-+... +|||.|.+-.-|.|++++.
T Consensus 115 ~~~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 115 KANDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 456789999999976664 8999999999999999876
No 85
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=22.33 E-value=75 Score=28.37 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=59.3
Q ss_pred cCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCC-chhhhccccccCCcccccccCCccCHHHH----HHHHHHhcCCC--
Q psy9057 154 KLKSSQKDKVKRFISFTQTGELTAINCLSQNDW-KLDLASDNYFQNPSAYYKEQKSSVDRKKL----ESLYSKYKDAS-- 226 (279)
Q Consensus 154 kLss~QkelVrQF~sITGASek~A~qyLkaanW-dLE~AvdaFF~nP~~~~~ss~~s~~~kkL----eaLFDkYkDpd-- 226 (279)
..+..+++.-+.++++.|..++.|...|...+. ++-.|+.+= ++. .. .+-++..++.. -+|-+++....
T Consensus 62 F~~~~Er~lF~~L~~V~GIGpK~Al~iL~~~~~~el~~aI~~~--d~~-~L-~~ipGiGkKtAerIileLk~k~~~~~~~ 137 (191)
T TIGR00084 62 FNTLEERELFKELIKVNGVGPKLALAILSNMSPEEFVYAIETE--EVK-AL-VKIPGVGKKTAERLLLELKGKLKGNKNL 137 (191)
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHhC--CHH-HH-HhCCCCCHHHHHHHHHHHHhhhcccccc
Confidence 788889999999999999999999999998766 666666530 110 00 01122233333 44455553210
Q ss_pred CC---CccCHHHHHHHHhhcCCCCCcHHHHH
Q psy9057 227 EP---DKILVEGIMKFLDDLSLSPESKLVLI 254 (279)
Q Consensus 227 dp---D~IgiDGiirlcEDLGVdPEDvv~LV 254 (279)
.. ..-..+-++.-+..||+++.++.-.+
T Consensus 138 ~~~~~~~~~~~e~~~aL~~LGy~~~e~~~ai 168 (191)
T TIGR00084 138 EMFTPTEAARDELFEALVSLGYKPQEIQQAL 168 (191)
T ss_pred cccccccchHHHHHHHHHHcCCCHHHHHHHH
Confidence 00 00113556777789999998766443
No 86
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=72 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHH
Q psy9057 214 KLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKL 251 (279)
Q Consensus 214 kLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv 251 (279)
-|--||+.|.+.+..-.++.|.+..-++|.|.+++|+-
T Consensus 4 vl~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~dI~ 41 (157)
T COG2922 4 VLMYLFETYIHNEAELPVDQDSLENDLEDAGFDREDIY 41 (157)
T ss_pred HHHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHHHHH
Confidence 35568999997653346889999999999999999863
No 87
>PF14565 IL22: Interleukin 22 IL-10-related T-cell-derived-inducible factor; PDB: 1M4R_A 1YKB_F 3G9V_D 3DGC_M 3Q1S_I 3DLQ_I.
Probab=22.03 E-value=1.2e+02 Score=26.62 Aligned_cols=51 Identities=27% Similarity=0.457 Sum_probs=31.2
Q ss_pred HhhhhHHHHHHHHHHhhhhhHhhhHHHHHHHHhHHHhhhccCCchhhhhhcHHHH
Q psy9057 35 LLNSNIKALQKKLSEKCKTDQHKQNLEKCMQKFKDTFQNNLKGPLEEFNTSISEL 89 (279)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (279)
-+.+....|-+|||. |+..--.+..++=++.||++|.-- |+ ..-|..|+||
T Consensus 78 ~v~~Fla~ls~kLs~-C~~~~~~~hi~rn~~~lk~~~kkL--Ge-~g~~KAIGEL 128 (139)
T PF14565_consen 78 EVVSFLANLSSKLSQ-CHINGDDQHIQRNVEQLKDKVKKL--GE-SGKNKAIGEL 128 (139)
T ss_dssp HHHHHHHHHHHHHTT----SS-SHHHHHHHHHHHHHHHHT--HH-HHHHHHHHTH
T ss_pred HHHHHHHHHHHhccc-cccCCCcHHHHHHHHHHHHHHHHH--hh-hhhHHHHHHH
Confidence 344445558888886 775555555678888888888642 54 4556777776
No 88
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=20.19 E-value=92 Score=30.48 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=29.5
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCCchhhhccccccC
Q psy9057 162 KVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 198 (279)
Q Consensus 162 lVrQF~sITGASek~A~qyLkaanWdLE~AvdaFF~n 198 (279)
.+|=.+++||++.++|.+.|..++.+.-.|+=.....
T Consensus 236 a~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~~~~ 272 (298)
T COG2103 236 AVRIVMEATGCSAEEAEALLEEAGGNVKLAIVMLLTG 272 (298)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHHHhC
Confidence 3667788899999999999999998888887655533
No 89
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=20.02 E-value=80 Score=24.13 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHHhhcCCCCCcHHH
Q psy9057 213 KKLESLYSKYKDASEPDKILVEGIMKFLDDLSLSPESKLV 252 (279)
Q Consensus 213 kkLeaLFDkYkDpddpD~IgiDGiirlcEDLGVdPEDvv~ 252 (279)
.-|-.+|-.|--+.+ +.|...+++++++++||++..+.+
T Consensus 4 Sli~tl~Gdy~~~~g-~~i~~~~Li~ll~~~Gv~e~avR~ 42 (70)
T PF07848_consen 4 SLIVTLLGDYLRPRG-GWIWVASLIRLLAAFGVSESAVRT 42 (70)
T ss_dssp HHHHHHHHHHCCTTT-S-EEHHHHHHHHCCTT--HHHHHH
T ss_pred eehHHHHHHHhccCC-CceeHHHHHHHHHHcCCChHHHHH
Confidence 456788999987653 679999999999999999876554
Done!