RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9057
(279 letters)
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 33.1 bits (77), Expect = 0.14
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 26 QDFERKLISLLNSNIKALQKKLSEKCK-TDQHKQNLEKCMQKFKDTFQ 72
+ FE +L++ L SN L +++ E +D+ + L+ +++FK TF
Sbjct: 454 RRFEAELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEFKKTFA 501
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase.
Length = 525
Score = 30.7 bits (70), Expect = 0.89
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 74 NLKGPLEEFNTSI---SELFKIAPHVLFPED-------EVYRNYSEDSSNNIDEEVKEL 122
N G + + +S S+ + + P D EV + Y ED+S+ +D+EV+ L
Sbjct: 284 NRNGLINNWRSSFFSPSDPVRAS---SLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESL 339
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 30.3 bits (69), Expect = 1.2
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 105 RNYSEDSSNNIDEEVKEL-ENNYRK-TQLLT 133
+ YSE+++ IDEEVK + E Y++ Q+LT
Sbjct: 436 KEYSEETAREIDEEVKRIIEEAYKRAKQILT 466
>gnl|CDD|238323 cd00578, L-fuc_L-ara-isomerases, L-fucose isomerase (FucIase) and
L-arabinose isomerase (AI) family; composed of FucIase,
AI and similar proteins. FucIase converts L-fucose, an
aldohexose, to its ketose form, which prepares it for
aldol cleavage (similar to the isomerization of glucose
in glycolysis). L-fucose (or 6-deoxy-L-galactose) is
found in various oligo- and polysaccharides in mammals,
bacteria and plants. AI catalyzes the isomerization of
L-arabinose to L-ribulose, the first reaction in its
conversion to D-xylulose-5-phosphate, an intermediate in
the pentose phosphate pathway, which allows L-arabinose
to be used as a carbon source. AI can also convert
D-galactose to D-tagatose at elevated temperatures in
the presence of divalent metal ions. D-tagatose, rarely
found in nature, is of commercial interest as a
low-calorie sugar substitute.
Length = 452
Score = 30.3 bits (69), Expect = 1.2
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 91 KIAPHV-LFPEDEVYRNYSEDSSNNIDEEVKELENNYRKTQLLTILAQGELKMLKEIECA 149
K V E+ R E S ++E ++E E NY L L+ + A
Sbjct: 186 KFGVSVEYLEVGELVRRIDEVSDEEVEELLEEYEENYDVVLDAKGLTDESLRKAARLYLA 245
Query: 150 MQD 152
++
Sbjct: 246 LRR 248
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 29.2 bits (66), Expect = 2.7
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 21 TLTVQQDFERKLISLLNSNIKALQKKLSEKCKTDQHKQNLEKCMQKFKD--TFQNNLKGP 78
T T Q I+ + +K LQ L K D LE+ M +F + LK
Sbjct: 289 TCTQQISEGPDRITKIKDKLKELQHSLE---KLDTAIDELEEIMDEFNEQSKKLLELKNK 345
Query: 79 LEEFNTSISELFKIAPHVLFPEDEVYRNYSEDSSNNIDEEVKELENNYRKT 129
+ S+ L A V + + + + EE+ +L++ K
Sbjct: 346 ISTNKQSLITLVDKAKKV---KAAIEE--LQAEFVDNAEELAKLQDELDKI 391
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 29.0 bits (65), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 40 IKALQKKLSEKCKTDQHKQNLEKCMQKFKD 69
IK K+L ++ D+H +N ++ QKFK+
Sbjct: 21 IKRAYKRLVKEWHPDRHPENRKEAEQKFKE 50
>gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS
family.
Length = 308
Score = 28.4 bits (64), Expect = 3.7
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 52 KTDQHKQNLEKCMQKFKDTFQNNLKGPLEEFNTSISELFK-IAPHVLFPEDEVYRNYSE- 109
+ +Q LE + PL E + EL P + + +
Sbjct: 90 GLKEIRQLLESLDGPLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPE 149
Query: 110 -----DSSNNIDEEVKELENNYRK 128
+ ++EE++EL R+
Sbjct: 150 LDELREKLEELEEELEELLKKERE 173
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 929
Score = 28.8 bits (64), Expect = 4.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 187 KLDLASDNYFQNPSAYYK-EQKSSVDRKKLESLYSKYKDAS 226
K+D+ YF NP K E K +VD K L+S Y+K + S
Sbjct: 330 KIDMVDKIYFNNPRVDIKEETKLNVDEKSLDSFYTKPAEGS 370
>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase.
Chalcone-flavanone isomerase is a plant enzyme
responsible for the isomerisation of chalcone to
naringenin, a key step in the biosynthesis of
flavonoids.
Length = 200
Score = 28.0 bits (63), Expect = 4.5
Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 24 VQQDFER--KLISLLNSNIKALQKKLSEKC-----KTDQHKQNLEKCMQKFKDTFQN 73
+ E+ +++ + N + K L+ E K ++ E+ ++KF++ F++
Sbjct: 71 LDGGIEKFIRIVPIRNLDGKHLRDGFVESLVARLKKAGTYEDEEEEALEKFREAFKD 127
>gnl|CDD|218782 pfam05859, Mis12, Mis12 protein. Kinetochores are the chromosomal
sites for spindle interaction and play a vital role in
chromosome segregation. Fission yeast kinetochore
protein Mis12, is required for correct spindle
morphogenesis, determining metaphase spindle length.
Thirty-five to sixty percent extension of metaphase
spindle length takes place in Mis12 mutants. It has been
shown that Mis12 genetically interacts with Mal2,
another inner centromere core complex protein in S.
pombe.
Length = 141
Score = 27.3 bits (61), Expect = 6.1
Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 17/142 (11%)
Query: 12 YSVKFFGYSTLTVQQD----FERKLISLLNSNIKALQKKLSEKCKTDQHKQNLEKCMQKF 67
Y + FG++ T+ D L + K L K+L ++ +E K
Sbjct: 1 YLTEHFGFTPQTLIDDVINAVNDYLYKATQAVEKVLLKRLPIMGAEIAPEEEIENGTAKL 60
Query: 68 ----KDTFQNNLKGPLEEFNTSISELFKIAPHVLFPEDEVYRNYSEDSSNNIDEEVKELE 123
+ N E + + +F I P+ L PED R Y D E K
Sbjct: 61 ETLLESRVDKNFDK-FELY--VLRNIFSI-PNELLPEDWF-RLYHYD----DLELTKAKL 111
Query: 124 NNYRKTQLLTILAQGELKMLKE 145
+ A EL+ K+
Sbjct: 112 EQDLELDAELEQALAELEEQKK 133
>gnl|CDD|218422 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This
family consists of several bacterial proteins which are
closely related to NAD-glutamate dehydrogenase found in
Streptomyces clavuligerus. Glutamate dehydrogenases
(GDHs) are a broadly distributed group of enzymes that
catalyze the reversible oxidative deamination of
glutamate to ketoglutarate and ammonia.
Length = 1526
Score = 28.2 bits (64), Expect = 6.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 117 EEVKE--LENNYRKTQLLTILAQGELKMLKE 145
+EV E L +NY +T L++ L+E
Sbjct: 1125 DEVAELVLRDNYLQTLALSLAEARAAARLEE 1155
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 28.2 bits (63), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 1 MADTSKLSESEYSVKFFGYSTLTV 24
+ DTSKL+ S+Y V F + TV
Sbjct: 352 IKDTSKLTTSDYEVTFTSATNYTV 375
>gnl|CDD|225455 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid
transport and metabolism].
Length = 1592
Score = 28.1 bits (63), Expect = 6.7
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 101 DEVYRNYSEDSSNNIDEEVKELENNYRKTQLLTILAQGELKMLKEI-ECAMQDHKLKSSQ 159
+EV D ++ + ++ + Y + +L I + L M + + + ++
Sbjct: 340 EEVIARAGLDPESHSGKLLRNVLETYPRDELFQISTELLLTMAYAVVKLGDRPRVRLFAR 399
Query: 160 KDKVKRFIS 168
D+ RFIS
Sbjct: 400 ADRFDRFIS 408
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41.
Length = 212
Score = 27.6 bits (62), Expect = 6.8
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 105 RNYSEDSSNNIDEEVKEL-ENNYRK-TQLLT 133
+ YSE++++ IDEEV+ L E Y + ++LT
Sbjct: 155 KEYSEETADIIDEEVRRLLEEAYERAKEILT 185
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 27.7 bits (62), Expect = 7.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 95 HVLFPEDEVYRNYSEDSSNNIDEEVKELENNY-----RKTQLLTILA 136
H+LFP+ V + S N E+++ E Y + LL IL
Sbjct: 185 HLLFPKGSVTPPNANIISKNRLAEIEKQEAKYAREANIRKNLLLILL 231
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 27.6 bits (62), Expect = 7.8
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 26 QDFERKLISLLNSN-IKALQKKLSEKCKTDQHKQNLEKCMQKFKDTFQNNL 75
DFE++L++ L S+ + L++ + K D+ + L+ +++FK TF
Sbjct: 454 ADFEKELLAYLRSDHKELLEEIRTTKELDDEIEAKLKAAIKEFKKTFALTE 504
>gnl|CDD|163190 TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme
interconverts tartronate semi-aldehyde (TSA, aka
2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E.
coli enzyme has been characterized and found to be
specific for TSA, contain no cofactors, and have a
rather high Km for hydroxypyruvate of 12.5 mM. The gene
is ofter found in association with glyoxalate
carboligase (which produces TSA), but has been shown to
have no effect on growth on glyoxalate when knocked out.
This is consistent with the fact that the gene for
tartronate semialdehyde reductase (glxR) is also
associated and may have primary responsibility for the
catabolism of TSA.
Length = 254
Score = 27.3 bits (61), Expect = 8.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 258 RFKAAAQCEFSRDEFM 273
RF AAAQ F+ E++
Sbjct: 19 RFAAAAQAGFTGVEYL 34
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.356
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,436,549
Number of extensions: 1245608
Number of successful extensions: 1103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1099
Number of HSP's successfully gapped: 75
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)