RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9057
         (279 letters)



>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 46

 Score = 42.7 bits (101), Expect = 9e-07
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query: 155 LKSSQKDKVKRFISFTQTGELTAINCLSQNDWKLDLASDNYFQN 198
           +   ++D ++ F++ T   E  A   L    W L +A  +++++
Sbjct: 1   MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44


>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
           3 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 131

 Score = 29.5 bits (66), Expect = 0.19
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 22  LTVQQDFERKLISLLNSNIKALQKKLSEKCK-TDQHKQNLEKCMQKFKDTFQ 72
            +    FE   +S + S  +AL  K+    K +++    L++ +  F   F+
Sbjct: 79  PSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFE 130


>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain
           3 {Spinach (Spinacia oleracea), chloroplast [TaxId:
           3562]}
          Length = 129

 Score = 29.5 bits (66), Expect = 0.22
 Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 22  LTVQQDFERKLISLLNSNIKALQKKLSEKCK-TDQHKQNLEKCMQKFKDTF 71
           L   + +  +L + + +N    Q+ +S     T++ +  L++ +Q+  + F
Sbjct: 79  LDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF 129


>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
          beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 401

 Score = 25.4 bits (55), Expect = 9.1
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 18 GYSTLTV--QQDFERKLISLLNSNIKALQKKLSEKCKTDQHKQNLEKCMQKFKDTFQNN 74
             T+T   Q   E K+  + +S  K          + ++H   L++ +++  D ++  
Sbjct: 19 SVETVTSIEQAKVEEKIQEVFSS-YKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECL 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,765
Number of extensions: 43032
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 22
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.1 bits)