Query psy9058
Match_columns 142
No_of_seqs 118 out of 1225
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:51:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.2E-33 2.7E-38 250.1 16.4 136 5-140 600-737 (737)
2 PRK11154 fadJ multifunctional 100.0 9.5E-33 2E-37 243.7 16.1 134 5-142 573-708 (708)
3 TIGR02440 FadJ fatty oxidation 100.0 2.8E-32 6E-37 240.5 16.1 132 5-140 568-699 (699)
4 TIGR02437 FadB fatty oxidation 100.0 5.3E-32 1.1E-36 239.1 16.2 133 5-140 579-714 (714)
5 PRK11730 fadB multifunctional 100.0 1.1E-30 2.3E-35 230.9 16.3 134 5-141 579-715 (715)
6 PRK08268 3-hydroxy-acyl-CoA de 100.0 2.7E-29 5.9E-34 214.8 12.6 90 47-141 414-504 (507)
7 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.1E-28 2.3E-33 211.0 14.0 87 48-139 414-501 (503)
8 KOG1683|consensus 99.9 4.1E-28 8.9E-33 197.7 7.2 131 5-141 249-380 (380)
9 PF00725 3HCDH: 3-hydroxyacyl- 99.9 6.8E-26 1.5E-30 154.4 8.3 89 49-141 1-96 (97)
10 KOG2304|consensus 99.9 2.2E-23 4.9E-28 161.6 9.0 93 45-141 196-296 (298)
11 PRK05808 3-hydroxybutyryl-CoA 99.9 5.4E-22 1.2E-26 157.9 10.6 93 45-141 182-281 (282)
12 PRK09260 3-hydroxybutyryl-CoA 99.9 5.8E-22 1.3E-26 158.3 10.1 92 46-141 182-279 (288)
13 PRK07819 3-hydroxybutyryl-CoA 99.9 1E-21 2.2E-26 157.4 10.3 92 46-141 187-285 (286)
14 PRK08293 3-hydroxybutyryl-CoA 99.8 6.7E-21 1.4E-25 152.2 10.4 92 46-141 186-285 (287)
15 PLN02545 3-hydroxybutyryl-CoA 99.8 8E-21 1.7E-25 152.0 10.3 92 46-141 184-282 (295)
16 COG1250 FadB 3-hydroxyacyl-CoA 99.8 1E-20 2.2E-25 153.0 9.3 93 45-141 182-282 (307)
17 PRK06035 3-hydroxyacyl-CoA deh 99.8 1.5E-20 3.3E-25 150.3 9.3 93 45-141 185-289 (291)
18 PRK07530 3-hydroxybutyryl-CoA 99.8 3.1E-20 6.7E-25 148.5 10.0 92 46-141 184-282 (292)
19 PRK08269 3-hydroxybutyryl-CoA 99.8 4.3E-19 9.3E-24 144.1 10.2 94 47-141 181-281 (314)
20 TIGR02440 FadJ fatty oxidation 99.8 8.3E-19 1.8E-23 155.2 9.9 90 46-141 485-580 (699)
21 PRK11154 fadJ multifunctional 99.8 1.3E-18 2.7E-23 154.2 9.8 90 46-141 490-585 (708)
22 PRK06130 3-hydroxybutyryl-CoA 99.8 2.5E-18 5.4E-23 138.3 10.0 94 47-141 182-281 (311)
23 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 7.2E-18 1.6E-22 144.5 9.7 92 46-141 185-284 (503)
24 TIGR02441 fa_ox_alpha_mit fatt 99.7 9E-18 2E-22 149.3 9.1 91 45-141 514-612 (737)
25 PRK11730 fadB multifunctional 99.7 1.3E-17 2.8E-22 148.0 9.7 92 45-141 492-591 (715)
26 TIGR02437 FadB fatty oxidation 99.7 1.6E-17 3.5E-22 147.3 9.2 92 45-141 492-591 (714)
27 PRK08268 3-hydroxy-acyl-CoA de 99.7 1.4E-16 3.1E-21 136.6 10.1 91 47-141 188-286 (507)
28 PRK07066 3-hydroxybutyryl-CoA 99.6 3.1E-15 6.6E-20 122.0 8.1 70 46-116 185-255 (321)
29 PRK06129 3-hydroxyacyl-CoA deh 99.3 3.2E-11 6.9E-16 97.3 9.9 88 46-134 184-275 (308)
30 PRK07531 bifunctional 3-hydrox 98.8 1.9E-08 4.2E-13 86.3 8.2 69 45-114 181-250 (495)
31 KOG1683|consensus 98.5 9.2E-08 2E-12 78.9 3.0 86 45-141 169-261 (380)
32 KOG2305|consensus 97.9 6.8E-06 1.5E-10 64.7 3.2 73 46-119 186-264 (313)
33 PRK08269 3-hydroxybutyryl-CoA 96.7 0.00062 1.4E-08 55.5 1.1 16 5-20 269-284 (314)
34 PF09003 Phage_integ_N: Bacter 59.7 3.3 7.2E-05 27.0 0.2 17 4-20 17-33 (75)
35 PF02493 MORN: MORN repeat; I 51.5 8.5 0.00018 18.5 0.9 16 6-21 6-21 (23)
36 COG1458 Predicted DNA-binding 46.9 49 0.0011 25.7 4.8 19 64-82 151-169 (221)
37 KOG2738|consensus 42.7 32 0.0007 28.5 3.4 31 52-84 128-158 (369)
38 PHA01735 hypothetical protein 32.2 1.4E+02 0.0031 19.2 4.8 36 48-84 6-41 (76)
39 TIGR03875 RNA_lig_partner RNA 32.1 1.1E+02 0.0024 23.8 4.7 69 53-134 136-204 (206)
40 PF06478 Corona_RPol_N: Corona 28.3 1.5E+02 0.0033 24.6 5.1 38 25-72 153-190 (355)
41 TIGR01505 tartro_sem_red 2-hyd 26.8 1.4E+02 0.0029 23.5 4.6 37 50-87 169-209 (291)
42 PRK11559 garR tartronate semia 25.6 1.4E+02 0.003 23.5 4.5 35 52-87 174-212 (296)
43 COG3673 Uncharacterized conser 25.1 1.1E+02 0.0024 25.9 3.8 36 45-84 128-163 (423)
44 PRK04358 hypothetical protein; 24.4 1.6E+02 0.0034 23.1 4.4 69 52-133 139-207 (217)
45 PRK14622 hypothetical protein; 23.9 2.2E+02 0.0048 19.4 4.7 41 47-91 61-101 (103)
46 KOG1785|consensus 22.5 44 0.00096 28.8 1.1 20 12-34 324-343 (563)
47 KOG3188|consensus 22.4 48 0.001 26.0 1.2 54 48-111 134-187 (246)
48 PF06262 DUF1025: Possibl zinc 21.5 2.1E+02 0.0045 19.3 4.1 32 45-80 63-94 (97)
49 PF10683 DBD_Tnp_Hermes: Herme 21.3 79 0.0017 20.2 1.8 35 94-128 29-63 (68)
50 TIGR03722 arch_KAE1 universal 21.3 3E+02 0.0066 22.2 5.8 63 53-130 46-108 (322)
51 KOG3316|consensus 21.0 1.6E+02 0.0036 21.9 3.7 42 49-90 4-48 (163)
52 PRK14878 UGMP family protein; 20.8 2.9E+02 0.0063 22.4 5.6 62 55-131 47-108 (323)
53 smart00698 MORN Possible plasm 20.8 52 0.0011 16.6 0.8 15 6-20 8-22 (26)
54 PF02796 HTH_7: Helix-turn-hel 20.6 1E+02 0.0023 17.3 2.2 19 60-80 11-29 (45)
55 PF02627 CMD: Carboxymuconolac 20.1 1.2E+02 0.0025 18.6 2.5 33 51-85 35-67 (85)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.2e-33 Score=250.11 Aligned_cols=136 Identities=65% Similarity=1.115 Sum_probs=122.0
Q ss_pred CCCccccccceEeecCCCC-CCCCCHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKGSK-ARPVNDGALAILKKYSLQPQS-ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGA 82 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~ 82 (142)
+|+|+|||+|||+|+++++ .+.++|++..++.+..+.+.. ..++++|+||++++++|||++||+|||+++|+|||.+|
T Consensus 600 G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~ 679 (737)
T TIGR02441 600 GFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGA 679 (737)
T ss_pred CCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHH
Confidence 6999999999999987653 467899999988655433222 47899999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCC
Q psy9058 83 VFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFY 140 (142)
Q Consensus 83 ~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy 140 (142)
++|+|||+|+||||+++|.+|+++++++++.+++.+|++|+|+++|++|+++-|++||
T Consensus 680 ~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~~~~p~~lL~~~~~~~g~~f~ 737 (737)
T TIGR02441 680 VFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPCQLLLDHAKSPGKKFY 737 (737)
T ss_pred HhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999876466787
No 2
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=9.5e-33 Score=243.73 Aligned_cols=134 Identities=42% Similarity=0.845 Sum_probs=121.5
Q ss_pred CCCccccccceEeecCCCC--CCCCCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKGSK--ARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGA 82 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~ 82 (142)
+++|+|||+|||+|+++++ .+..++++..++.. ..+..+++++|+||++.+++|||++|++|||+++|+|||.+|
T Consensus 573 g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~ 649 (708)
T PRK11154 573 DRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI---TPQSRLSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGA 649 (708)
T ss_pred CCCcccCCceEEECCCCcccccccCCHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHH
Confidence 6899999999999986443 35678988877632 233468999999999999999999999999989999999999
Q ss_pred HhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCCCC
Q psy9058 83 VFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYPS 142 (142)
Q Consensus 83 ~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy~~ 142 (142)
++|+|||+|+||||+++|.+|++++++.++.+++.++++|+|+++|.+|+++ |++||++
T Consensus 650 ~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~-~~~f~~~ 708 (708)
T PRK11154 650 VFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAER-GESFYPT 708 (708)
T ss_pred HhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHc-CCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999 9999974
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.8e-32 Score=240.49 Aligned_cols=132 Identities=41% Similarity=0.841 Sum_probs=120.9
Q ss_pred CCCccccccceEeecCCCCCCCCCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHh
Q psy9058 5 CPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVF 84 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~ 84 (142)
+++|+|||+|||+|+++++.+.+++.+..++.. .....+++++|+||++.+++|||++|++|||+++|+|||.+|++
T Consensus 568 G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~ 644 (699)
T TIGR02440 568 DRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI---KPGVDKEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIF 644 (699)
T ss_pred CCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHh
Confidence 689999999999998766557789998887731 22336899999999999999999999999998999999999999
Q ss_pred hcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCC
Q psy9058 85 GLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFY 140 (142)
Q Consensus 85 g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy 140 (142)
|+|||+++||||+++|.+|+++++++++.+.+.+|++|+|+++|.+|+++ |++||
T Consensus 645 g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~-~~~f~ 699 (699)
T TIGR02440 645 GIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAE-KQSFY 699 (699)
T ss_pred cCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHc-CCCcC
Confidence 99999999999999999999999999999999999999999999999999 99998
No 4
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.98 E-value=5.3e-32 Score=239.15 Aligned_cols=133 Identities=36% Similarity=0.684 Sum_probs=118.3
Q ss_pred CCCccccccceEeecCC---CCCCCCCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKG---SKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVG 81 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a 81 (142)
+|+|+|||+|||+|+++ +..+.+|+++..++...+. ..+.+++++|+||++.+++||+++|++|||+++|+|||.+
T Consensus 579 G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~ 657 (714)
T TIGR02437 579 KRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-EQRDFDDEEIIARMMIPMINETVRCLEEGIVATAAEADMG 657 (714)
T ss_pred CCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 69999999999999643 2235689999888865433 2346789999999999999999999999988999999999
Q ss_pred HHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCC
Q psy9058 82 AVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFY 140 (142)
Q Consensus 82 ~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy 140 (142)
|++|+|||+|+||||+++|.+|+++++++++.+. .++++|+|+++|++|+++ |+.||
T Consensus 658 ~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~~~~-g~~f~ 714 (714)
T TIGR02437 658 LVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREMAKN-GQSFY 714 (714)
T ss_pred HHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHc-CCCCC
Confidence 9999999999999999999999999999999765 788999999999999999 88998
No 5
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.97 E-value=1.1e-30 Score=230.93 Aligned_cols=134 Identities=34% Similarity=0.672 Sum_probs=118.4
Q ss_pred CCCccccccceEeecCCC--C-CCCCCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKGS--K-ARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVG 81 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a 81 (142)
+++|+|||+|||+|+++. + ++..|+.+.++++.... ..+.+++++|+||++.+++|||++|++|||+++|+|||.+
T Consensus 579 G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a 657 (715)
T PRK11730 579 KRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ-PKREFSDEEIIARMMIPMINEVVRCLEEGIVASPAEADMA 657 (715)
T ss_pred CCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc-ccCCCCHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 689999999999997532 1 35578998888865432 2346789999999999999999999999988999999999
Q ss_pred HHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCCC
Q psy9058 82 AVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYP 141 (142)
Q Consensus 82 ~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy~ 141 (142)
|++|+|||+++||||+++|.+|+++++++++.+. +++++|+|+++|++|+++ |++||+
T Consensus 658 ~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~v~~-~~~f~~ 715 (715)
T PRK11730 658 LVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREMAAN-GESYYP 715 (715)
T ss_pred HHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHc-CCCCCC
Confidence 9999999999999999999999999999999875 578999999999999999 999995
No 6
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=2.7e-29 Score=214.79 Aligned_cols=90 Identities=30% Similarity=0.499 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhC-CCCCcc
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG-APFRPC 125 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g-~~~~p~ 125 (142)
+++||+||++++++|||++|++||| +||+|||.+|++|+|||+ |||+++|.+|++.++++++.+++.+| ++|+|+
T Consensus 414 ~~Gfi~nRll~~~~nEa~~ll~eGv-as~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~ 489 (507)
T PRK08268 414 SPGFVAQRTVAMIVNEAADIAQQGI-ASPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQALYGDPRYRPS 489 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcC
Confidence 7999999999999999999999999 799999999999999999 99999999999999999999999998 599999
Q ss_pred HHHHHHHHccCCCCCC
Q psy9058 126 QLLLDHAKDSSKKFYP 141 (142)
Q Consensus 126 ~~l~~~~~~gg~gfy~ 141 (142)
++|++|+++ |..||.
T Consensus 490 ~ll~~~v~~-G~~~~~ 504 (507)
T PRK08268 490 PWLRRRAAL-GLSLRS 504 (507)
T ss_pred HHHHHHHHc-CCCcCC
Confidence 999999999 888985
No 7
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.96 E-value=1.1e-28 Score=211.01 Aligned_cols=87 Identities=26% Similarity=0.468 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhC-CCCCccH
Q psy9058 48 DEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG-APFRPCQ 126 (142)
Q Consensus 48 ~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g-~~~~p~~ 126 (142)
++||+||++++++|||+++++||| +||+|||.+|++|+|||+ |||+++|.+|++.++++++.+++.++ ++|+|++
T Consensus 414 pGfi~nRil~~~~nEA~~ll~eGv-as~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~ 489 (503)
T TIGR02279 414 PGLLILRTVAMLANEAADAVLQGV-ASAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHHYGEERYRPSS 489 (503)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCH
Confidence 599999999999999999999999 699999999999999999 99999999999999999999999998 6999999
Q ss_pred HHHHHHHccCCCC
Q psy9058 127 LLLDHAKDSSKKF 139 (142)
Q Consensus 127 ~l~~~~~~gg~gf 139 (142)
+|++|+.. |..|
T Consensus 490 ~L~~~v~~-g~~~ 501 (503)
T TIGR02279 490 LLRRRALL-GSGY 501 (503)
T ss_pred HHHHHHHc-CCCc
Confidence 99999999 7665
No 8
>KOG1683|consensus
Probab=99.95 E-value=4.1e-28 Score=197.70 Aligned_cols=131 Identities=50% Similarity=0.911 Sum_probs=116.3
Q ss_pred CCCccccccceEeecCCCCCCCCCHHHHHHHHHhccCCC-CCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQ-SALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAV 83 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~ 83 (142)
||.|+|||+|||.|.++-+++.-.+++.+.+++...... +..+++++++|++.++||||++|++|||+++|+++|.+.+
T Consensus 249 ~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~~r~~~~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v 328 (380)
T KOG1683|consen 249 GRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPNPRVADDEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASV 328 (380)
T ss_pred HhhhhhccCcccccccccccCCChhhHHHHHHHhccCCCcccCCHHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeee
Confidence 689999999999998764322223677888877764333 5789999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCCC
Q psy9058 84 FGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYP 141 (142)
Q Consensus 84 ~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy~ 141 (142)
+|+|||+++||||+++|..|++.+++++++|+. |+|+.+|.+++++ ++.||.
T Consensus 329 ~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~-~~~~~~ 380 (380)
T KOG1683|consen 329 FGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKS-GKKFYN 380 (380)
T ss_pred eccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhh-hccccC
Confidence 999999999999999999999999999999975 9999999999999 888884
No 9
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.93 E-value=6.8e-26 Score=154.36 Aligned_cols=89 Identities=34% Similarity=0.562 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCC-CCccHH
Q psy9058 49 EDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP-FRPCQL 127 (142)
Q Consensus 49 ~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~-~~p~~~ 127 (142)
|||+||++++++|||++|++||+ +||++||.+++.++|||+ |||+++|.+|++++.++++.+.+..+++ ++|+++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egv-as~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGV-ASPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL 76 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence 58999999999999999999998 799999999999999999 9999999999999999999999999864 889999
Q ss_pred HHHHHHcc------CCCCCC
Q psy9058 128 LLDHAKDS------SKKFYP 141 (142)
Q Consensus 128 l~~~~~~g------g~gfy~ 141 (142)
+++|+++| |+|||+
T Consensus 77 l~~mv~~g~~G~k~g~Gfy~ 96 (97)
T PF00725_consen 77 LKEMVEEGRLGRKSGKGFYD 96 (97)
T ss_dssp HHHHHHTT--BGGGTBSSSB
T ss_pred HHHHHHCCCCcCcCCCccee
Confidence 99999885 999995
No 10
>KOG2304|consensus
Probab=99.89 E-value=2.2e-23 Score=161.57 Aligned_cols=93 Identities=26% Similarity=0.378 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhC--CCC
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG--APF 122 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g--~~~ 122 (142)
.-++|||+||+|.|+++||+++++.|. +|-+|||.||++|.|+|| ||||++|.+|+|++..+++-|++.++ ..|
T Consensus 196 kDtpGFIVNRlLiPyl~ea~r~yerGd-AskeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f 271 (298)
T KOG2304|consen 196 KDTPGFIVNRLLIPYLMEAIRMYERGD-ASKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLF 271 (298)
T ss_pred cCCCchhhhHHHHHHHHHHHHHHHhcC-CcHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCccccc
Confidence 457999999999999999999999999 999999999999999999 99999999999999999999999985 589
Q ss_pred CccHHHHHHHHcc------CCCCCC
Q psy9058 123 RPCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 123 ~p~~~l~~~~~~g------g~gfy~ 141 (142)
+|+|+|.+++++| |+|||+
T Consensus 272 ~psPll~klVaegklGrKtg~GfY~ 296 (298)
T KOG2304|consen 272 APSPLLDKLVAEGKLGRKTGEGFYK 296 (298)
T ss_pred CCChHHHHHHhccccccccCcccee
Confidence 9999999999886 889996
No 11
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.87 E-value=5.4e-22 Score=157.92 Aligned_cols=93 Identities=27% Similarity=0.455 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhC-CCCC
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG-APFR 123 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g-~~~~ 123 (142)
.-+++||.||++++++|||++|+++|| +||+|||.++++|+|||+ |||+++|.+|++.+.++++.+.+.++ ++|+
T Consensus 182 ~d~~g~i~~Ri~~~~~~ea~~~~~~gv-~~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~ 257 (282)
T PRK05808 182 KNAPGFVVNRILIPMINEAIFVLAEGV-ATAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYR 257 (282)
T ss_pred cCccChHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCC
Confidence 467999999999999999999999999 889999999999999999 99999999999999999999999888 4889
Q ss_pred ccHHHHHHHHcc------CCCCCC
Q psy9058 124 PCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 124 p~~~l~~~~~~g------g~gfy~ 141 (142)
|++++++|+++| |+|||.
T Consensus 258 ~~~~l~~~~~~g~~G~k~g~Gfy~ 281 (282)
T PRK05808 258 PCPLLRKMVAAGWLGRKTGRGFYD 281 (282)
T ss_pred CCHHHHHHHHCCCCccccCCcccC
Confidence 999999999885 889996
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.87 E-value=5.8e-22 Score=158.27 Aligned_cols=92 Identities=26% Similarity=0.373 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPC 125 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~ 125 (142)
-.++|++||++++++|||++|+++|| ++|+|||.+++.|+|||+ |||+++|.+|++.++++++.+.+.++++|.|+
T Consensus 182 d~~Gf~~nRl~~~~~~ea~~~~~~gv-~~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~ 257 (288)
T PRK09260 182 EFPGFVTSRISALVGNEAFYMLQEGV-ATAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPA 257 (288)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCC
Confidence 45899999999999999999999999 899999999999999999 99999999999999999999999889999999
Q ss_pred HHHHHHHHcc------CCCCCC
Q psy9058 126 QLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 126 ~~l~~~~~~g------g~gfy~ 141 (142)
++|.+|+++| |+|||.
T Consensus 258 ~~l~~~~~~g~~G~k~g~Gfy~ 279 (288)
T PRK09260 258 PLLEKYVKAGRLGRKTGRGVYD 279 (288)
T ss_pred HHHHHHHHCCCCccccCCEEEE
Confidence 9999999875 899994
No 13
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.86 E-value=1e-21 Score=157.39 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC-CCCc
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA-PFRP 124 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~-~~~p 124 (142)
-+++||.||++.+++|||++|++||+ +||+|||.+++.|+|||+ |||+++|.+|++.++++++.+.+.+++ +|.|
T Consensus 187 d~pGfi~nRi~~~~~~Ea~~ll~eGv-~~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p 262 (286)
T PRK07819 187 DRSGFVVNALLVPYLLSAIRMVESGF-ATAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAP 262 (286)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCC
Confidence 45899999999999999999999999 899999999999999999 999999999999999999999998884 8899
Q ss_pred cHHHHHHHHcc------CCCCCC
Q psy9058 125 CQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 125 ~~~l~~~~~~g------g~gfy~ 141 (142)
+++|++|+++| |+|||.
T Consensus 263 ~~~l~~~v~~g~~G~k~g~GfY~ 285 (286)
T PRK07819 263 PPLLLRMVEAGLLGKKSGRGFYT 285 (286)
T ss_pred CHHHHHHHHCCCCcccCCCEecc
Confidence 99999999985 899995
No 14
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.85 E-value=6.7e-21 Score=152.20 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCC--C
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPF--R 123 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~--~ 123 (142)
-.++||+||++.+++|||++++++|+ +||+|||.+|+.++|||+ |||+++|.+|+|.+.++++.+.+.++.++ .
T Consensus 186 d~pgfi~nRi~~~~~~ea~~l~~~g~-a~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 261 (287)
T PRK08293 186 EQPGYILNSLLVPFLSAALALWAKGV-ADPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKK 261 (287)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCccccc
Confidence 57899999999999999999999999 899999999999999999 99999999999999999999999888643 3
Q ss_pred ccHHHHHHHHcc------CCCCCC
Q psy9058 124 PCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 124 p~~~l~~~~~~g------g~gfy~ 141 (142)
|++++++|+++| |+|||.
T Consensus 262 ~~~~l~~~v~~g~~G~k~g~Gfy~ 285 (287)
T PRK08293 262 AAALLKEYIDKGKLGVATGEGFYN 285 (287)
T ss_pred chHHHHHHHHCCCCcccCCCcccc
Confidence 889999999985 889995
No 15
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.84 E-value=8e-21 Score=152.05 Aligned_cols=92 Identities=26% Similarity=0.426 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC-CCCc
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA-PFRP 124 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~-~~~p 124 (142)
-++++|.||++.+++|||++|++||+ ++++|||.++++|+|||+ |||+++|.+|++.+.++++.+.+.+++ +|.|
T Consensus 184 d~~g~i~nri~~~~~~ea~~~~~~gv-~~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~ 259 (295)
T PLN02545 184 DYPGFIVNRILMPMINEAFYALYTGV-ASKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRP 259 (295)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCC
Confidence 45899999999999999999999999 899999999999999999 999999999999999999999998884 7999
Q ss_pred cHHHHHHHHcc------CCCCCC
Q psy9058 125 CQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 125 ~~~l~~~~~~g------g~gfy~ 141 (142)
+++|.+|+++| |+|||+
T Consensus 260 ~~~l~~~~~~g~~G~k~g~Gfy~ 282 (295)
T PLN02545 260 CPLLVQYVDAGRLGRKSGRGVYH 282 (295)
T ss_pred CHHHHHHHHCCCCcccCCCeeeE
Confidence 99999999885 889985
No 16
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.84 E-value=1e-20 Score=152.96 Aligned_cols=93 Identities=30% Similarity=0.474 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhC--CCC
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG--APF 122 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g--~~~ 122 (142)
.-+++||+||++.++++||++++++|+ +||++||.+|+.++|||+ |||+++|.+|+|+..+.++.+.+.++ +.+
T Consensus 182 ~D~pGFi~NRil~~~~~eA~~l~~eGv-a~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~ 257 (307)
T COG1250 182 KDVPGFIVNRLLAALLNEAIRLLEEGV-ATPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYY 257 (307)
T ss_pred cCCCceehHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999 899999999999999998 99999999999999999999998777 467
Q ss_pred CccHHHHHHHHcc------CCCCCC
Q psy9058 123 RPCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 123 ~p~~~l~~~~~~g------g~gfy~ 141 (142)
.|++++++|++.| |+|||+
T Consensus 258 ~~~~~~~~~v~~g~lG~Ksg~GfY~ 282 (307)
T COG1250 258 RPPPLLRKLVEAGRLGRKSGKGFYD 282 (307)
T ss_pred cccHHHHHHHhcccccccCCCccee
Confidence 8899999999875 999995
No 17
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.83 E-value=1.5e-20 Score=150.30 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC-CCC
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA-PFR 123 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~-~~~ 123 (142)
.-.++|+.||++.+++|||+++++||+ +||+|||++++.++|||+ |||+++|.+|++++.++++.+.+.+++ +|.
T Consensus 185 ~d~pgfv~nRl~~~~~~ea~~~~~~g~-a~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~ 260 (291)
T PRK06035 185 ADVPGFFTTRFIEGWLLEAIRSFEIGI-ATIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFI 260 (291)
T ss_pred CCCCCeeHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCC
Confidence 357899999999999999999999999 899999999999999999 999999999999999999999998884 789
Q ss_pred ccHHHHHHHHcc-----------CCCCCC
Q psy9058 124 PCQLLLDHAKDS-----------SKKFYP 141 (142)
Q Consensus 124 p~~~l~~~~~~g-----------g~gfy~ 141 (142)
|+++|++|+++| |+|||.
T Consensus 261 ~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~ 289 (291)
T PRK06035 261 PPNSLKQMVLNGYVGDKKVKYGSKGGWFD 289 (291)
T ss_pred ccHHHHHHHHCCCCcCCCCCCCCCceeee
Confidence 999999999873 578985
No 18
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.83 E-value=3.1e-20 Score=148.46 Aligned_cols=92 Identities=25% Similarity=0.412 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC-CCCc
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA-PFRP 124 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~-~~~p 124 (142)
-.+++|+||++.+++|||+.++++|+ +||++||.++++|+|||+ |||+++|.+|++.+.++++.+.+.+++ +|+|
T Consensus 184 d~pg~i~nRl~~~~~~ea~~~~~~g~-~~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p 259 (292)
T PRK07530 184 DFPAFIVNRILLPMINEAIYTLYEGV-GSVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRP 259 (292)
T ss_pred CcCChHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCC
Confidence 45799999999999999999999999 899999999999999998 999999999999999999999998874 8999
Q ss_pred cHHHHHHHHcc------CCCCCC
Q psy9058 125 CQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 125 ~~~l~~~~~~g------g~gfy~ 141 (142)
+++|.+|+++| |+|||+
T Consensus 260 ~~~l~~~v~~g~~G~k~g~Gfy~ 282 (292)
T PRK07530 260 CPLLVKYVEAGWLGRKTGRGFYD 282 (292)
T ss_pred CHHHHHHHHCCCCccccCCEeee
Confidence 99999999764 899995
No 19
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=4.3e-19 Score=144.10 Aligned_cols=94 Identities=23% Similarity=0.331 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC-CCCcc
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA-PFRPC 125 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~-~~~p~ 125 (142)
++++++||++.++++||+.|+++|+ .+|++||.++..|+|||++++|||+++|.+|+++++++++.+.+.+++ +|.|+
T Consensus 181 ~~Gfi~nri~~~~l~EAl~l~e~g~-~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~ 259 (314)
T PRK08269 181 SPGYIVPRIQALAMNEAARMVEEGV-ASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPP 259 (314)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3589999999999999999999999 899999999999999999999999999999999999999999988885 99999
Q ss_pred HHHHHHHHcc------CCCCCC
Q psy9058 126 QLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 126 ~~l~~~~~~g------g~gfy~ 141 (142)
++|++|+++| |+|||.
T Consensus 260 ~~l~~~v~~g~~G~ksG~GfY~ 281 (314)
T PRK08269 260 AIVVRNMEEGRDGLRTGAGFYD 281 (314)
T ss_pred HHHHHHHHCCCCcccCCCccee
Confidence 9999999985 899994
No 20
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.78 E-value=8.3e-19 Score=155.17 Aligned_cols=90 Identities=27% Similarity=0.286 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPC 125 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~ 125 (142)
-+++||+||++.+++|||++|+++|+ +|+|||.+|+ ++|||+ |||+++|.+|+|+++++++.+.+.++++|.|+
T Consensus 485 d~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~ 558 (699)
T TIGR02440 485 DKAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAP 558 (699)
T ss_pred cccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCc
Confidence 46899999999999999999999996 8999999997 899999 99999999999999999999999999999999
Q ss_pred HHHHHHHHcc------CCCCCC
Q psy9058 126 QLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 126 ~~l~~~~~~g------g~gfy~ 141 (142)
++|++|+++| |+|||+
T Consensus 559 ~~l~~~v~~G~lG~ksg~GfY~ 580 (699)
T TIGR02440 559 AVFDKLLSDDRKGRKNGKGFYL 580 (699)
T ss_pred HHHHHHHHCCCCcccCCcEEEe
Confidence 9999999985 889994
No 21
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.77 E-value=1.3e-18 Score=154.20 Aligned_cols=90 Identities=24% Similarity=0.278 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPC 125 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~ 125 (142)
-+++||+||++.+++|||++|++||+ +|+|||.+++ ++|||+ |||+++|.+|++.+.++++.+.+.++++|.|+
T Consensus 490 d~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~ 563 (708)
T PRK11154 490 DGAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAP 563 (708)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCC
Confidence 46899999999999999999999998 8999999998 899999 99999999999999999999999889999999
Q ss_pred HHHHHHHHcc------CCCCCC
Q psy9058 126 QLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 126 ~~l~~~~~~g------g~gfy~ 141 (142)
+++++|+++| |+|||.
T Consensus 564 ~~l~~~v~~g~~G~k~g~GfY~ 585 (708)
T PRK11154 564 AAFDKLLNDDRKGRKNGRGFYL 585 (708)
T ss_pred HHHHHHHHCCCCcccCCceEEE
Confidence 9999999885 889995
No 22
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=2.5e-18 Score=138.33 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccH
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQ 126 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~ 126 (142)
.+++++||++.++++||+.|+++|+ .+|++||.++..++|||++++|||+++|.+|++.+.++++.+.+.+++++.|++
T Consensus 182 ~~G~i~nr~~~~~~~Ea~~l~~~g~-~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 260 (311)
T PRK06130 182 IPGFIANRIQHALAREAISLLEKGV-ASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSP 260 (311)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCH
Confidence 4789999999999999999999998 699999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHcc------CCCCCC
Q psy9058 127 LLLDHAKDS------SKKFYP 141 (142)
Q Consensus 127 ~l~~~~~~g------g~gfy~ 141 (142)
+|++|+++| |+|||.
T Consensus 261 ~l~~~~~~g~~G~~~g~gfy~ 281 (311)
T PRK06130 261 LLEEKVEAGELGAKSGQGFYA 281 (311)
T ss_pred HHHHHHHcCCccccCCCcCcc
Confidence 999999764 889985
No 23
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.74 E-value=7.2e-18 Score=144.50 Aligned_cols=92 Identities=25% Similarity=0.308 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHh-C-CCCC
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLY-G-APFR 123 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~-g-~~~~ 123 (142)
-+++||.||++.++++||+.++++|+ ++|++||.++..++|||+ |||+++|.+|+|..+++++.+.+.. + ++|.
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~-a~~~~ID~al~~~~G~~m---GPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~ 260 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQV-AAPAVLDAALRDGAGFPM---GPFELTDLIGHDVNFAVTCSVFNAFWQDRRFL 260 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcCCCCc---CHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCC
Confidence 35899999999999999999999998 899999999999999999 9999999999999999999998764 4 6899
Q ss_pred ccHHHHHHHHcc------CCCCCC
Q psy9058 124 PCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 124 p~~~l~~~~~~g------g~gfy~ 141 (142)
|++++++|+++| |+|||.
T Consensus 261 p~~~~~~~v~~G~lG~KtG~GfY~ 284 (503)
T TIGR02279 261 PSLVQQELVIAGRLGRKSGLGVYD 284 (503)
T ss_pred CcHHHHHHHHCCCCccccCCEeee
Confidence 999999999885 999994
No 24
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.73 E-value=9e-18 Score=149.33 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCC-
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFR- 123 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~- 123 (142)
.-+++||+||++.+++|||++|++||+ +|++||.++ .++|||+ |||+++|.+|+|..+++++.+.+.++++|.
T Consensus 514 ~d~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~---GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~ 587 (737)
T TIGR02441 514 KDGPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPV---GAATLADEVGVDVAEHVAEDLGKAFGERFGG 587 (737)
T ss_pred CCcCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCccccc
Confidence 457999999999999999999999998 999999997 5999999 999999999999999999999988888774
Q ss_pred -ccHHHHHHHHcc------CCCCCC
Q psy9058 124 -PCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 124 -p~~~l~~~~~~g------g~gfy~ 141 (142)
|++++.+|+++| |+|||.
T Consensus 588 ~~~~~l~~~v~~G~~G~k~G~GfY~ 612 (737)
T TIGR02441 588 GSAELLSELVKAGFLGRKSGKGIFI 612 (737)
T ss_pred ccCHHHHHHHHCCCCcccCCCeeEE
Confidence 689999999885 889994
No 25
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.73 E-value=1.3e-17 Score=147.98 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCC--C
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP--F 122 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~--~ 122 (142)
.-+++||+||++.+++|||++++++| +||+|||.+++.++|||+ |||+++|.+|+|++.++++.+...++++ .
T Consensus 492 ~d~pGfv~nRi~~~~~~ea~~lv~~G--a~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~ 566 (715)
T PRK11730 492 NDCPGFFVNRVLFPYFAGFSQLLRDG--ADFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKK 566 (715)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCcccc
Confidence 45799999999999999999999999 499999999999999999 9999999999999999999999887764 3
Q ss_pred CccHHHHHHHHcc------CCCCCC
Q psy9058 123 RPCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 123 ~p~~~l~~~~~~g------g~gfy~ 141 (142)
.|++++.+|+++| |+|||.
T Consensus 567 ~~~~~l~~~v~~G~~G~k~g~GfY~ 591 (715)
T PRK11730 567 DYRDAIDVLFEAKRFGQKNGKGFYR 591 (715)
T ss_pred chhHHHHHHHHCCCCccccCCEeEe
Confidence 4578999999985 899995
No 26
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.72 E-value=1.6e-17 Score=147.32 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCC--
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPF-- 122 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~-- 122 (142)
.-+++||.||++.++++||++|++||+ ||++||.+|..++|||+ |||+++|.+|+|..+++.+.+.+.++.++
T Consensus 492 ~d~pGfi~NRl~~~~~~ea~~l~~eG~--~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~ 566 (714)
T TIGR02437 492 NDCPGFFVNRVLFPYFGGFSKLLRDGA--DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGK 566 (714)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCccccc
Confidence 357999999999999999999999995 99999999999999999 99999999999999999999988877653
Q ss_pred CccHHHHHHHHcc------CCCCCC
Q psy9058 123 RPCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 123 ~p~~~l~~~~~~g------g~gfy~ 141 (142)
.|++++.+|+++| |+|||.
T Consensus 567 ~~~~~l~~~v~~G~lG~K~g~GfY~ 591 (714)
T TIGR02437 567 DGRDAIDALFEAKRLGQKNGKGFYA 591 (714)
T ss_pred chhHHHHHHHHCCCCcccCCCEEEe
Confidence 3568999999885 889994
No 27
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.68 E-value=1.4e-16 Score=136.63 Aligned_cols=91 Identities=25% Similarity=0.323 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHh--CCCCCc
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLY--GAPFRP 124 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~--g~~~~p 124 (142)
+++||.||++.++++||+.++++|+ ++|++||.++..++|||+ |||+++|.+|+|..+++.+.+.+.. .++|.|
T Consensus 188 ~pGfi~Nrll~~~~~Ea~~l~~~g~-~~~~~iD~al~~~~G~~m---GPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~~ 263 (507)
T PRK08268 188 TPGFIVNRAARPYYTEALRVLEEGV-ADPATIDAILREAAGFRM---GPFELMDLIGLDVNHAVMESVYRQFYQEPRFRP 263 (507)
T ss_pred CCChHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcCCCCc---CHHHHHHHhchHHHHHHHHHHHHHhcCCCcCCc
Confidence 4799999999999999999999998 799999999999999999 9999999999999999999888765 468999
Q ss_pred cHHHHHHHHcc------CCCCCC
Q psy9058 125 CQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 125 ~~~l~~~~~~g------g~gfy~ 141 (142)
++++++|+++| |+|||.
T Consensus 264 ~~~~~~lv~~g~lG~ksG~GfY~ 286 (507)
T PRK08268 264 SLIQQELVAAGRLGRKSGQGFYR 286 (507)
T ss_pred cHHHHHHHHCCCCccccCCeeeE
Confidence 99999999875 899994
No 28
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.59 E-value=3.1e-15 Score=122.02 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHH-HHHHHHHHHH
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADK-LVQKMLSYEN 116 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~-~~~~l~~l~~ 116 (142)
=+++||.||++.+++|||+++++||+ +|++|||.+|+.|+|+|+...|||+++|.+|++. +.+.++++..
T Consensus 185 d~pGFi~NRl~~a~~~EA~~lv~eGv-as~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~ 255 (321)
T PRK07066 185 EVPGFIADRLLEALWREALHLVNEGV-ATTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGP 255 (321)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhh
Confidence 47999999999999999999999999 8999999999999999966669999999999997 3444455433
No 29
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.27 E-value=3.2e-11 Score=97.34 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhh---CHHHHHHHHHHHHHHhC-CC
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWY---GADKLVQKMLSYENLYG-AP 121 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~---G~~~~~~~l~~l~~~~g-~~ 121 (142)
-.+++|.||++.++++||+.++++|+ .|+++||.++..|+|+++..-|||+++|.. |++.+......+....+ +.
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~-~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~ 262 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGV-ASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAER 262 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhcccc
Confidence 45789999999999999999999999 899999999999999995555999999987 99999999999988877 58
Q ss_pred CCccHHHHHHHHc
Q psy9058 122 FRPCQLLLDHAKD 134 (142)
Q Consensus 122 ~~p~~~l~~~~~~ 134 (142)
+.|+|++.+++++
T Consensus 263 ~~~~~~~~~~~~~ 275 (308)
T PRK06129 263 GQPVPWDGELVAR 275 (308)
T ss_pred CCCchhhHHHHHH
Confidence 8899888888764
No 30
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.80 E-value=1.9e-08 Score=86.28 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHH-HHHHHHHHH
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGAD-KLVQKMLSY 114 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~-~~~~~l~~l 114 (142)
...++++.||++.++++||+.++++|+ .|+++||.++..|+|+++...|||+.+|..|.+ .+.+.++++
T Consensus 181 k~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~ 250 (495)
T PRK07531 181 KEIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQF 250 (495)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHh
Confidence 467999999999999999999999999 899999999999999987777999999999844 444554544
No 31
>KOG1683|consensus
Probab=98.47 E-value=9.2e-08 Score=78.94 Aligned_cols=86 Identities=17% Similarity=0.063 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHc-CccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCC
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEE-TILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFR 123 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~e-Gv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~ 123 (142)
.-+.+|.+||++.++.+++.+++.| |+ +|..||... .-||||+ ||+.+.|..|++.-.+.-..+..+.+++
T Consensus 169 g~c~gf~v~r~l~~y~~~~~~~l~e~g~--~p~~iD~~~-t~fGf~~---g~~~L~d~~gfdv~eal~~gl~~~~~~r-- 240 (380)
T KOG1683|consen 169 GNCCGFRVNRLLPPYTIGLNELLLEIGA--DPWLIDSLI-TKFGFRV---GERALADGVGFDVAEALAVGLGDEIGPR-- 240 (380)
T ss_pred ccCCceEEEecccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCccc---cHHHHhhccCccHHHHHhhccchhccch--
Confidence 3568899999999999999999988 66 999999954 6699999 9999999999998776655555444444
Q ss_pred ccHHHHHHHHcc------CCCCCC
Q psy9058 124 PCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 124 p~~~l~~~~~~g------g~gfy~ 141 (142)
+..+|++++ ++|||+
T Consensus 241 ---~~eel~~~~~~g~kT~kg~y~ 261 (380)
T KOG1683|consen 241 ---IEEELLEKGRAGIKTGKGIYP 261 (380)
T ss_pred ---hHHHHHHHHhhhhhccCcccc
Confidence 344444432 888874
No 32
>KOG2305|consensus
Probab=97.95 E-value=6.8e-06 Score=64.74 Aligned_cols=73 Identities=18% Similarity=0.071 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhh--CHHHHHHH----HHHHHHHhC
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWY--GADKLVQK----MLSYENLYG 119 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~--G~~~~~~~----l~~l~~~~g 119 (142)
-..||.+||+.++++||.-++++.|| -+..|+|..|..|+|.+-...||+|.+... |+....++ +.+..+.+|
T Consensus 186 ei~Gf~lnriq~Ailne~wrLvasGi-l~v~dvD~VmS~GLG~RYAflG~lET~HLNA~Gv~dYf~Rys~~I~aV~~t~G 264 (313)
T KOG2305|consen 186 EILGFALNRIQYAILNETWRLVASGI-LNVNDVDAVMSAGLGPRYAFLGPLETAHLNAEGVADYFKRYSAGITAVLKTMG 264 (313)
T ss_pred ccccceeccccHHHHHHHHHHHHccC-cchhhHHHHHhcCCCcchhcccchhhhhcCcHHHHHHHHHhhhhHHHHHHHcC
Confidence 34689999999999999999999999 689999999999999999999999998874 66555443 334444556
No 33
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.70 E-value=0.00062 Score=55.49 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=14.5
Q ss_pred CCCccccccceEeecC
Q psy9058 5 CPPGRKSGKGYFVYAK 20 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~ 20 (142)
+++|+|||+|||+|++
T Consensus 269 g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 269 GRDGLRTGAGFYDYAG 284 (314)
T ss_pred CCCcccCCCcceeCCC
Confidence 6899999999999964
No 34
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=59.73 E-value=3.3 Score=27.01 Aligned_cols=17 Identities=35% Similarity=1.103 Sum_probs=8.9
Q ss_pred CCCCccccccceEeecC
Q psy9058 4 WCPPGRKSGKGYFVYAK 20 (142)
Q Consensus 4 ~~rlG~K~G~GfY~y~~ 20 (142)
+|+..+++|+|||.|-.
T Consensus 17 y~~~dkr~~k~Yy~Yr~ 33 (75)
T PF09003_consen 17 YCRKDKRNGKGYYQYRN 33 (75)
T ss_dssp EEETT-----SEEEEE-
T ss_pred cccCCcCcceeEEEEec
Confidence 56777899999999954
No 35
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=51.48 E-value=8.5 Score=18.49 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=12.8
Q ss_pred CCccccccceEeecCC
Q psy9058 6 PPGRKSGKGYFVYAKG 21 (142)
Q Consensus 6 rlG~K~G~GfY~y~~~ 21 (142)
..|++.|.|-|.|+++
T Consensus 6 ~~g~~~G~G~~~~~~G 21 (23)
T PF02493_consen 6 KNGKKHGYGVYTFPDG 21 (23)
T ss_dssp ETTEEECEEEEE-TTS
T ss_pred EECcccccEEEEeCCC
Confidence 5689999999999864
No 36
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=46.91 E-value=49 Score=25.70 Aligned_cols=19 Identities=37% Similarity=0.279 Sum_probs=15.7
Q ss_pred HHHHHcCccCChHHHHHHH
Q psy9058 64 VLCLEETILNSPTDGDVGA 82 (142)
Q Consensus 64 ~~ll~eGv~~tp~diD~a~ 82 (142)
-..+-.|+++|..|+|...
T Consensus 151 R~alR~GiLDSapDlDvLL 169 (221)
T COG1458 151 REALRKGILDSAPDLDVLL 169 (221)
T ss_pred HHHHHhccccccchhHHHH
Confidence 4567789999999999854
No 37
>KOG2738|consensus
Probab=42.73 E-value=32 Score=28.52 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHcCccCChHHHHHHHHh
Q psy9058 52 QLRMVSRFVNEAVLCLEETILNSPTDGDVGAVF 84 (142)
Q Consensus 52 ~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~ 84 (142)
..|+-..++++|..++.-|| |.++||.+...
T Consensus 128 ac~LarevLd~Aa~~v~Pgv--TTdEiD~~VH~ 158 (369)
T KOG2738|consen 128 ACRLAREVLDYAATLVRPGV--TTDEIDRAVHN 158 (369)
T ss_pred HHHHHHHHHHHHhhhcCCCc--cHHHHHHHHHH
Confidence 35777789999999999999 99999987654
No 38
>PHA01735 hypothetical protein
Probab=32.15 E-value=1.4e+02 Score=19.22 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHh
Q psy9058 48 DEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVF 84 (142)
Q Consensus 48 ~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~ 84 (142)
.++...-+...+.||-.+-+..|- +|..|+-.|.-+
T Consensus 6 ~ee~fs~LH~~lt~El~~Riksge-ATtaDL~AA~d~ 41 (76)
T PHA01735 6 TEEQFDELHQLLTNELLSRIKSGE-ATTADLRAACDW 41 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHH
Confidence 456677888889999999999999 888888876644
No 39
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=32.14 E-value=1.1e+02 Score=23.80 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q psy9058 53 LRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHA 132 (142)
Q Consensus 53 ~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~ 132 (142)
..++.-+-+.=-..+-.|++.|..|+|..+ +.+-.. |.+-. |.. .++.+++.+|-++.++..+..|+
T Consensus 136 ~~~I~~lRekYReAlR~GiLdS~~Didvla-LA~ELd----a~lvT-dD~-------giqn~A~~Lgi~~~~~~~f~~~L 202 (206)
T TIGR03875 136 GKIIRKLREKYREALRKGILDSAEDLDVLL-LAKELD----AAVVS-ADE-------GIRKWAERLGLRFVDARNFPEML 202 (206)
T ss_pred HHHHHHHHHHHHHHHHccccCchhhHHHHH-HHHHcC----cEEEe-CcH-------HHHHHHHHcCCeeecHHHHHHHH
Confidence 444444444445567789999999999855 333332 22222 222 34556777888898877777777
Q ss_pred Hc
Q psy9058 133 KD 134 (142)
Q Consensus 133 ~~ 134 (142)
++
T Consensus 203 ~e 204 (206)
T TIGR03875 203 EE 204 (206)
T ss_pred HH
Confidence 64
No 40
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=28.27 E-value=1.5e+02 Score=24.61 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Q psy9058 25 RPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETIL 72 (142)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~ 72 (142)
+..||.+.+.+.+ -|.|++|.+..-+.=+-.|++.|+|
T Consensus 153 pVEN~di~~vy~k----------LG~iv~~a~L~~v~f~d~mv~~G~V 190 (355)
T PF06478_consen 153 PVENPDIHRVYAK----------LGPIVNRAMLKAVKFCDAMVEKGLV 190 (355)
T ss_pred CccChHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHCCee
Confidence 5568888777753 4789999998888888889999874
No 41
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=26.83 E-value=1.4e+02 Score=23.53 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHcCccCChHHHHHHHHhhcC
Q psy9058 50 DLQLRMVSRF----VNEAVLCLEETILNSPTDGDVGAVFGLG 87 (142)
Q Consensus 50 ~i~~Rll~~~----~nEa~~ll~eGv~~tp~diD~a~~~g~G 87 (142)
.+.|+++... ++|+..+.+..- .+++++..++..+.+
T Consensus 169 Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l~~~~~ 209 (291)
T TIGR01505 169 KVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQALRGGLA 209 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcCcc
Confidence 4788888876 899988886554 499999998876654
No 42
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=25.60 E-value=1.4e+02 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=25.8
Q ss_pred HHHHHHH----HHHHHHHHHHcCccCChHHHHHHHHhhcC
Q psy9058 52 QLRMVSR----FVNEAVLCLEETILNSPTDGDVGAVFGLG 87 (142)
Q Consensus 52 ~~Rll~~----~~nEa~~ll~eGv~~tp~diD~a~~~g~G 87 (142)
.|+++.+ +++|++.+.+..- .++++++.++..+.+
T Consensus 174 ~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l~~~~~ 212 (296)
T PRK11559 174 ANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAIRGGLA 212 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcCcc
Confidence 5665555 5899999887544 489999998876554
No 43
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=25.09 E-value=1.1e+02 Score=25.88 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHh
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVF 84 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~ 84 (142)
-+|.+....|+++.||.. +-++..+. ++-||.||..
T Consensus 128 GFSRGAf~aRVlagmir~-vGlls~~~---~~~~d~Aw~~ 163 (423)
T COG3673 128 GFSRGAFSARVLAGMIRH-VGLLSRKH---AARIDEAWAH 163 (423)
T ss_pred eccchhHHHHHHHHHHHH-hhhhcccc---HHHHHHHHHH
Confidence 589999999999999864 56666655 8999999865
No 44
>PRK04358 hypothetical protein; Provisional
Probab=24.44 E-value=1.6e+02 Score=23.11 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q psy9058 52 QLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDH 131 (142)
Q Consensus 52 ~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~ 131 (142)
+..++.-+-+.=-..+-.|++.|..|+|..+. .+-.. |.+-.-| . .++.+++.+|-++.++..+..|
T Consensus 139 v~~~I~~lRekYReAlr~G~ldS~~DidvlaL-A~ELd----a~lvTdD-~-------giqn~A~~LGI~~~~~~~F~~~ 205 (217)
T PRK04358 139 VGKIISKLREKYREALRKGILDSAEDLDVLLL-AKELD----AAVVSAD-E-------GIRKWAERLGLRFVDARKFPRM 205 (217)
T ss_pred HHHHHHHHHHHHHHHHHcCcccchhhHHHHHH-HHHhC----CEEEeCC-H-------HHHHHHHHcCCeeecHHHHHHH
Confidence 44555555555566678899999999997553 22221 2222222 2 3455667788888886555454
Q ss_pred HH
Q psy9058 132 AK 133 (142)
Q Consensus 132 ~~ 133 (142)
++
T Consensus 206 Le 207 (217)
T PRK04358 206 LE 207 (217)
T ss_pred HH
Confidence 43
No 45
>PRK14622 hypothetical protein; Provisional
Probab=23.89 E-value=2.2e+02 Score=19.38 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCC
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPF 91 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~ 91 (142)
.+-+.+.-++.+-+|+|+.-+++ . ..+.+.. +..|+++|-+
T Consensus 61 ed~e~LeDLI~aA~N~A~~k~~~-~--~~~~m~~-~tgg~~lPG~ 101 (103)
T PRK14622 61 NDKAMLEDLVTAAVNAAVEKART-A--ADESMSK-ATGGIKIPGI 101 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHH-HhCCCCCCCC
Confidence 45678888999999999988877 2 3555555 3357777643
No 46
>KOG1785|consensus
Probab=22.54 E-value=44 Score=28.81 Aligned_cols=20 Identities=20% Similarity=0.592 Sum_probs=12.9
Q ss_pred ccceEeecCCCCCCCCCHHHHHH
Q psy9058 12 GKGYFVYAKGSKARPVNDGALAI 34 (142)
Q Consensus 12 G~GfY~y~~~~~~~~~~~~~~~~ 34 (142)
..|||.|+++. ..||++..+
T Consensus 324 keGFYlyPdGr---~~npdLt~l 343 (563)
T KOG1785|consen 324 KEGFYLYPDGR---DQNPDLTGL 343 (563)
T ss_pred ccceEECCCCc---cCCCChhhc
Confidence 47999999753 345555443
No 47
>KOG3188|consensus
Probab=22.36 E-value=48 Score=26.03 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHH
Q psy9058 48 DEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKM 111 (142)
Q Consensus 48 ~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l 111 (142)
.|||..++-+++...--.++..|| +-.++|.+|+-..-| ..+...|+.-++.-+
T Consensus 134 SGFv~~kvPFPLTlrFK~MlQ~Gi--~l~~LDv~wVSS~SW--------YFLnvfGLrsiysLi 187 (246)
T KOG3188|consen 134 SGFVTTKVPFPLTLRFKSMLQRGI--DLQDLDVSWVSSASW--------YFLNVFGLRSIYSLI 187 (246)
T ss_pred HHHHHhcCCchhHHHHHHHHHcCc--hhhhcchhHhhhhHH--------HHHHHhhhHHHHHHH
Confidence 578888888888888889999999 799999999887443 445555666555443
No 48
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=21.46 E-value=2.1e+02 Score=19.35 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHH
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDV 80 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~ 80 (142)
..+.+++...+-..++.|..+.+ |+ ++++||.
T Consensus 63 ~~~~~eL~~~I~~tlvhEiah~f--G~--~~e~l~~ 94 (97)
T PF06262_consen 63 ARSREELAELIRDTLVHEIAHHF--GI--SDEDLDA 94 (97)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHT--T----HHHHHC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHc--CC--CHHHhhh
Confidence 35777888888889999999999 88 8999986
No 49
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [].; PDB: 2BW3_B.
Probab=21.34 E-value=79 Score=20.19 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=24.0
Q ss_pred chhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHH
Q psy9058 94 GPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLL 128 (142)
Q Consensus 94 Gp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l 128 (142)
-||+.....|+..++..+-.+.+.+|++-.+..+|
T Consensus 29 Rpfsiv~gsGfk~la~~li~IGA~yG~~V~vd~lL 63 (68)
T PF10683_consen 29 RPFSIVSGSGFKKLAQFLINIGATYGENVNVDDLL 63 (68)
T ss_dssp --GGGGG-HHHHHHHHHHHHHHHHH-S-B-HHHHS
T ss_pred CcceeeccccHHHHHHHHHHHhHHhcccCCHHHcC
Confidence 57888889999999999999999999766554443
No 50
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=21.33 E-value=3e+02 Score=22.22 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHH
Q psy9058 53 LRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLD 130 (142)
Q Consensus 53 ~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~ 130 (142)
.+.+.+++++++. +.|+ +++|||... +.+.+ |.+. |+...+...+.++..++.+..+.+-+..
T Consensus 46 ~~~l~~~i~~~l~--~~~~--~~~did~Ia---vt~gP---g~~~-----~l~vg~~~ak~la~~~~~p~~~v~h~~a 108 (322)
T TIGR03722 46 AEVAPKLIKEALE--EAGV--SLEDIDAVA---FSQGP---GLGP-----CLRVGATAARALALKLNKPLVGVNHCVA 108 (322)
T ss_pred HHHHHHHHHHHHH--HcCC--CHHHCCEEE---EecCC---chHH-----hHHHHHHHHHHHHHHhCCCeechhhHHH
Confidence 4445556777765 3477 899999744 44545 5554 3444444455555555544444343333
No 51
>KOG3316|consensus
Probab=21.01 E-value=1.6e+02 Score=21.87 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHcCccCChHHHHHHHHhhcCCCC
Q psy9058 49 EDLQLRMVSRFVNEAVLC---LEETILNSPTDGDVGAVFGLGFPP 90 (142)
Q Consensus 49 ~~i~~Rll~~~~nEa~~l---l~eGv~~tp~diD~a~~~g~Gfp~ 90 (142)
+...+-+...|++.+... -++|-+..-...|.+...++||..
T Consensus 4 ~v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqV 48 (163)
T KOG3316|consen 4 EVLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQV 48 (163)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHH
Confidence 334455555666666666 345554556667999999999988
No 52
>PRK14878 UGMP family protein; Provisional
Probab=20.83 E-value=2.9e+02 Score=22.44 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q psy9058 55 MVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDH 131 (142)
Q Consensus 55 ll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~ 131 (142)
.+..++.+++. +.|+ +++|||... .++-+ |.|. |+...+...+.++..++.+..+.+-+...
T Consensus 47 ~l~~~i~~~l~--~a~~--~~~did~Ia---vt~gP---G~~~-----~lrvg~~~Ak~la~~~~~p~~~v~h~~~H 108 (323)
T PRK14878 47 VAPELLRKALE--KAGI--SIEDIDAVA---VSQGP---GLGP-----ALRVGATAARALALKYNKPLVPVNHCIAH 108 (323)
T ss_pred HHHHHHHHHHH--HcCC--CHHHCCEEE---EecCC---Cccc-----chHHHHHHHHHHHHHhCCCccccchHHHH
Confidence 34467766655 4577 899999744 33434 4332 45555555566666566444444434333
No 53
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=20.77 E-value=52 Score=16.57 Aligned_cols=15 Identities=33% Similarity=0.908 Sum_probs=12.5
Q ss_pred CCccccccceEeecC
Q psy9058 6 PPGRKSGKGYFVYAK 20 (142)
Q Consensus 6 rlG~K~G~GfY~y~~ 20 (142)
+.|++.|.|-|.|++
T Consensus 8 ~~g~~hG~G~~~~~d 22 (26)
T smart00698 8 RNGKRHGRGVYTYAN 22 (26)
T ss_pred ECCeEEeeEEEEecc
Confidence 458999999999975
No 54
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.64 E-value=1e+02 Score=17.31 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCccCChHHHHH
Q psy9058 60 VNEAVLCLEETILNSPTDGDV 80 (142)
Q Consensus 60 ~nEa~~ll~eGv~~tp~diD~ 80 (142)
++++..|+++|. +..+|=.
T Consensus 11 ~~~i~~l~~~G~--si~~IA~ 29 (45)
T PF02796_consen 11 IEEIKELYAEGM--SIAEIAK 29 (45)
T ss_dssp HHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHHCCC--CHHHHHH
Confidence 567778888886 6666543
No 55
>PF02627 CMD: Carboxymuconolactone decarboxylase family; InterPro: IPR003779 The catechol and protocatechuate branches of the 3-oxoadipate pathway, which are important for the bacterial degradation of aromatic compounds, converge at the common intermediate 3-oxoadipate enol-lactone. Carboxymuconolactone decarboxylase (CMD) is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway [].; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 2GMY_E 2CWQ_C 2QEU_B 1P8C_D 1VKE_C 2OUW_A 2AF7_G 3D7I_A 1ME5_B 1KNC_A ....
Probab=20.14 E-value=1.2e+02 Score=18.57 Aligned_cols=33 Identities=6% Similarity=-0.063 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhh
Q psy9058 51 LQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFG 85 (142)
Q Consensus 51 i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g 85 (142)
..|.+.+.+..........|+ |+++|+.+....
T Consensus 35 ~~~~~~~c~~~H~~~a~~~G~--t~eei~~~~~~~ 67 (85)
T PF02627_consen 35 AANGCAYCVKAHARAARKAGV--TEEEIDEAVRWA 67 (85)
T ss_dssp HHTTTHHHHHHHHHHHHHTTT--HHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 456666666666666778898 999999877664
Done!