Query psy9058
Match_columns 142
No_of_seqs 118 out of 1225
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:51:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zwc_A Peroxisomal bifunctiona 100.0 3.6E-34 1.2E-38 252.4 14.4 136 5-140 588-729 (742)
2 3k6j_A Protein F01G10.3, confi 100.0 9.1E-35 3.1E-39 244.7 9.1 131 5-135 309-444 (460)
3 1zcj_A Peroxisomal bifunctiona 100.0 9.1E-34 3.1E-38 238.4 14.1 135 5-140 309-449 (463)
4 1wdk_A Fatty oxidation complex 100.0 1.3E-32 4.6E-37 241.7 12.8 134 5-141 579-715 (715)
5 2wtb_A MFP2, fatty acid multif 100.0 2.3E-32 7.9E-37 240.5 9.0 135 5-141 575-716 (725)
6 3mog_A Probable 3-hydroxybutyr 100.0 1.2E-30 4.1E-35 220.7 13.0 91 46-141 384-475 (483)
7 3ctv_A HBD-10, 3-hydroxyacyl-C 99.9 1.4E-25 4.6E-30 155.8 6.8 85 47-135 15-100 (110)
8 1f0y_A HCDH, L-3-hydroxyacyl-C 99.8 2E-19 6.9E-24 142.5 9.5 91 47-141 202-300 (302)
9 1zej_A HBD-9, 3-hydroxyacyl-CO 99.8 2.7E-19 9.4E-24 142.9 5.7 90 50-141 174-270 (293)
10 3mog_A Probable 3-hydroxybutyr 99.8 1.4E-18 4.8E-23 146.9 9.2 92 46-141 185-284 (483)
11 4e12_A Diketoreductase; oxidor 99.7 5.8E-19 2E-23 139.1 3.6 90 45-141 186-282 (283)
12 3k6j_A Protein F01G10.3, confi 99.7 1.3E-16 4.4E-21 134.3 9.1 83 47-141 232-321 (460)
13 2wtb_A MFP2, fatty acid multif 99.7 1.1E-16 3.9E-21 140.8 7.8 88 47-141 493-587 (725)
14 1wdk_A Fatty oxidation complex 99.7 7.7E-17 2.6E-21 141.7 6.1 89 47-141 495-591 (715)
15 3zwc_A Peroxisomal bifunctiona 99.6 3.7E-16 1.2E-20 138.0 6.1 91 45-141 493-600 (742)
16 1zcj_A Peroxisomal bifunctiona 99.5 1.7E-14 5.7E-19 121.1 6.0 89 47-141 216-321 (463)
17 3ado_A Lambda-crystallin; L-gu 99.5 5E-14 1.7E-18 113.6 6.6 62 45-107 188-249 (319)
18 2dpo_A L-gulonate 3-dehydrogen 99.2 2.8E-11 9.5E-16 97.3 6.9 67 46-114 189-255 (319)
19 2ewd_A Lactate dehydrogenase,; 91.6 0.0022 7.4E-08 50.6 -6.9 50 48-104 170-229 (317)
20 2i76_A Hypothetical protein; N 86.9 1.1 3.6E-05 34.1 5.3 57 55-115 170-237 (276)
21 3d1l_A Putative NADP oxidoredu 73.9 2.1 7.1E-05 31.9 2.8 57 51-113 180-247 (266)
22 3dfu_A Uncharacterized protein 50.2 9.7 0.00033 28.7 2.6 29 51-80 144-177 (232)
23 2h78_A Hibadh, 3-hydroxyisobut 33.8 55 0.0019 24.4 4.6 35 52-87 175-213 (302)
24 1fry_A Myeloid antimicrobial p 28.1 14 0.00049 18.3 0.2 17 3-19 2-18 (29)
25 2w84_A Peroxisomal membrane pr 26.2 84 0.0029 19.3 3.6 31 62-97 38-68 (70)
26 2f69_A Histone-lysine N-methyl 23.1 31 0.001 26.3 1.4 17 6-22 6-22 (261)
27 3e11_A Predicted zincin-like m 21.4 1.4E+02 0.0046 19.8 4.3 31 46-80 81-111 (114)
28 1g2r_A Hypothetical cytosolic 21.1 36 0.0012 22.2 1.2 15 6-20 41-55 (100)
29 1xrx_A SEQA protein; protein f 20.8 1.2E+02 0.004 17.3 3.2 30 26-57 5-34 (50)
No 1
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=100.00 E-value=3.6e-34 Score=252.43 Aligned_cols=136 Identities=24% Similarity=0.380 Sum_probs=122.0
Q ss_pred CCCccccccceEeecCCC-CCCCCCHHHHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKGS-KARPVNDGALAILKKYSL---QPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDV 80 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~ 80 (142)
+|+|||||+|||+|++++ +.+.+||++..++...+. ..+..++.++|++|++++++||+++|++|||+.+|+|||.
T Consensus 588 G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~ 667 (742)
T 3zwc_A 588 GRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDV 667 (742)
T ss_dssp TCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred CCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHH
Confidence 699999999999998754 445679999888765544 2346789999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC--CCCccHHHHHHHHccCCCCC
Q psy9058 81 GAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA--PFRPCQLLLDHAKDSSKKFY 140 (142)
Q Consensus 81 a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~--~~~p~~~l~~~~~~gg~gfy 140 (142)
+|++|+|||+|+||||+|+|.+|++.++++++++++++|+ +|+|+++|++|+++|...||
T Consensus 668 a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~ 729 (742)
T 3zwc_A 668 IYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLK 729 (742)
T ss_dssp HHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGG
T ss_pred HHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCccc
Confidence 9999999999999999999999999999999999999984 89999999999999555666
No 2
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=100.00 E-value=9.1e-35 Score=244.73 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=115.7
Q ss_pred CCCccccccceEeecCCCCCCCCCHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVG 81 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a 81 (142)
+|||||||+|||+|+++++++.+||++.+++.+.+.. ....+++++|++|++++++||+++||+|||+.+|+|||.+
T Consensus 309 G~lG~KtG~GFY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~ 388 (460)
T 3k6j_A 309 KRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIM 388 (460)
T ss_dssp TCCBGGGTBSSSEECTTTCCEECCHHHHHHHHHC---CCCSSCCCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CCCeeecCCEEEECCCCCCCCCCCHHHHHHHHHHHHhcCCCcccCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHH
Confidence 6999999999999987665567899999998655431 2346889999999999999999999999998899999999
Q ss_pred HHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCC--CCccHHHHHHHHcc
Q psy9058 82 AVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP--FRPCQLLLDHAKDS 135 (142)
Q Consensus 82 ~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~--~~p~~~l~~~~~~g 135 (142)
|++|+|||+|+||||+|+|.+|++.+++.++.|++.+|++ |+|+++|++|+++|
T Consensus 389 ~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~~~L~~~a~~g 444 (460)
T 3k6j_A 389 FILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVADALKTANVST 444 (460)
T ss_dssp HHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCCHHHHHHC---
T ss_pred HHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999987 99999999999883
No 3
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=100.00 E-value=9.1e-34 Score=238.36 Aligned_cols=135 Identities=24% Similarity=0.362 Sum_probs=118.2
Q ss_pred CCCccccccceEeecCCCC-CCCCCHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHH
Q psy9058 5 CPPGRKSGKGYFVYAKGSK-ARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDV 80 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~ 80 (142)
+|+|||||+|||+|+++++ ....+|++.+++.+.... ....+++++|+||++.+++|||++|++|||+.+|+|||.
T Consensus 309 g~lG~k~g~Gfy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~ 388 (463)
T 1zcj_A 309 GRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDV 388 (463)
T ss_dssp TCCBGGGTBSSEEESSTTCSCEEECHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHH
T ss_pred CCCeeecCCeeccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7999999999999964342 234689888877644321 123478999999999999999999999999668999999
Q ss_pred HHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC--CCCccHHHHHHHHccCCCCC
Q psy9058 81 GAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA--PFRPCQLLLDHAKDSSKKFY 140 (142)
Q Consensus 81 a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~--~~~p~~~l~~~~~~gg~gfy 140 (142)
+|++|+|||+|+||||+++|.+|+++++++++.+++.+|+ +|+|+++|++|+++ |+.|.
T Consensus 389 a~~~G~G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~-G~~~~ 449 (463)
T 1zcj_A 389 IYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQ-GSPPL 449 (463)
T ss_dssp HHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHT-TCCCG
T ss_pred HHHhCCCCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHc-CCCcc
Confidence 9999999999999999999999999999999999999987 89999999999999 88885
No 4
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=99.98 E-value=1.3e-32 Score=241.67 Aligned_cols=134 Identities=33% Similarity=0.624 Sum_probs=118.3
Q ss_pred CCCccccccceEeec-C-CCC-CCCCCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHH
Q psy9058 5 CPPGRKSGKGYFVYA-K-GSK-ARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVG 81 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a 81 (142)
+|+|+|||+|||+|+ + +++ .+.+||++.+++...+. ....++.++|++|++.+++||+++|++|||+.+|+|||.+
T Consensus 579 g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~ 657 (715)
T 1wdk_A 579 KRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-EQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMG 657 (715)
T ss_dssp TCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHH
T ss_pred chhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-CccCCCHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 799999999999996 3 233 34589999988864332 1234789999999999999999999999998899999999
Q ss_pred HHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCCC
Q psy9058 82 AVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYP 141 (142)
Q Consensus 82 ~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy~ 141 (142)
|++|+|||+|+||||+|+|.+|++.++++++.+ +.+|++|+|+++|++|+++ |++||+
T Consensus 658 ~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~l~~~~~~-g~~f~~ 715 (715)
T 1wdk_A 658 LVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKLREMAKN-GQSFFG 715 (715)
T ss_dssp HHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHHHHHHHT-TCCSCC
T ss_pred HHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHc-CCCCCC
Confidence 999999999999999999999999999999999 8899999999999999999 899994
No 5
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=99.97 E-value=2.3e-32 Score=240.50 Aligned_cols=135 Identities=23% Similarity=0.476 Sum_probs=100.5
Q ss_pred CCCccccccceEeecCCCCCCCCCHHHHHHHHHhcc--C---CC--CCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHH
Q psy9058 5 CPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSL--Q---PQ--SALKDEDLQLRMVSRFVNEAVLCLEETILNSPTD 77 (142)
Q Consensus 5 ~rlG~K~G~GfY~y~~~~~~~~~~~~~~~~~~~~~~--~---~~--~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~d 77 (142)
+|+|+|||+|||+|+ ++++..+||++.+++.+.+. . .+ ..++.++|++|++.+++||+++|++|||+.+|+|
T Consensus 575 g~lG~k~g~GfY~y~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~d 653 (725)
T 2wtb_A 575 KRAGEATRKGFYLYD-DKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAAD 653 (725)
T ss_dssp C----------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred CCceecCCceeEeCC-CCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 799999999999995 32222367776655542211 1 11 1478999999999999999999999999889999
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCCC
Q psy9058 78 GDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYP 141 (142)
Q Consensus 78 iD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy~ 141 (142)
||.+|++|+|||+|+||||+|+|.+|++.++++++.+++.+|++|+|+++|++|+++ |++||+
T Consensus 654 iD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~-g~~f~~ 716 (725)
T 2wtb_A 654 LDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSK-GVLLSA 716 (725)
T ss_dssp HHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHH-TCCSSS
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHc-CCCccc
Confidence 999999999999999999999999999999999999999999999999999999999 899995
No 6
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=99.97 E-value=1.2e-30 Score=220.73 Aligned_cols=91 Identities=26% Similarity=0.468 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhC-CCCCc
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG-APFRP 124 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g-~~~~p 124 (142)
-+++||+||++++++|||++|++||| +||+|||.+|++|+|||+ |||+|+|.+|+++++++++.+++.+| ++|+|
T Consensus 384 d~~g~i~~Rll~~~~nEA~~~l~eGv-as~~diD~a~~~G~G~P~---GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p 459 (483)
T 3mog_A 384 DYPGMLIWRTVAMIINEALDALQKGV-ASEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRP 459 (483)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHSCCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhCCCCCC---CHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Confidence 36799999999999999999999999 799999999999999999 99999999999999999999999998 59999
Q ss_pred cHHHHHHHHccCCCCCC
Q psy9058 125 CQLLLDHAKDSSKKFYP 141 (142)
Q Consensus 125 ~~~l~~~~~~gg~gfy~ 141 (142)
+++|++|+++ |+.||.
T Consensus 460 ~~lL~~~v~~-G~~~~~ 475 (483)
T 3mog_A 460 CSLLRQRALL-ESGYES 475 (483)
T ss_dssp CHHHHHHHHH-HTCC--
T ss_pred CHHHHHHHHc-CCCCCC
Confidence 9999999999 777774
No 7
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=99.92 E-value=1.4e-25 Score=155.80 Aligned_cols=85 Identities=25% Similarity=0.430 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC-CCCcc
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA-PFRPC 125 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~-~~~p~ 125 (142)
+++||+||++.+++|||++|++||| +||+|||.+|++|+|||+ |||+++|.+|+++++++++.+++.+++ +|+|+
T Consensus 15 ~~gfi~nRll~~~~~eA~~ll~eGv-a~~~dID~a~~~g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~ 90 (110)
T 3ctv_A 15 TDKINPMDFTFVEINEAVKLVEMGV-ATPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKRLEELAKQFGKKIFEPA 90 (110)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHTTCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 6889999999999999999999999 599999999999999999 999999999999999999999999986 89999
Q ss_pred HHHHHHHHcc
Q psy9058 126 QLLLDHAKDS 135 (142)
Q Consensus 126 ~~l~~~~~~g 135 (142)
++|++|+++|
T Consensus 91 ~~L~~~v~~G 100 (110)
T 3ctv_A 91 KTLKEGKLEE 100 (110)
T ss_dssp HHHHTTTHHH
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 8
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=99.79 E-value=2e-19 Score=142.48 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHh-CC-CCCc
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLY-GA-PFRP 124 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~-g~-~~~p 124 (142)
.++++.||++.+++||+++++++|+ +++++||.++..|+|||+ |||+++|.+|+|+++++++.+.+.+ ++ +|+|
T Consensus 202 ~~g~i~nr~l~~~~~Ea~~l~~~g~-~~~~~id~~~~~g~g~p~---GP~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~ 277 (302)
T 1f0y_A 202 TPGFIVNRLLVPYLMEAIRLYERGD-ASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQP 277 (302)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCC
T ss_pred cccccHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHccCCCccCc
Confidence 3689999999999999999999998 599999999999999997 9999999999999999999999888 75 5999
Q ss_pred cHHHHHHHHcc------CCCCCC
Q psy9058 125 CQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 125 ~~~l~~~~~~g------g~gfy~ 141 (142)
+++|++|+++| |+|||+
T Consensus 278 ~~~l~~~~~~g~~G~k~g~Gfy~ 300 (302)
T 1f0y_A 278 SPSLNKLVAENKFGKKTGEGFYK 300 (302)
T ss_dssp CHHHHHHHHTTCCBTTTTBSSSB
T ss_pred CHHHHHHHHcCCCccccCcEeee
Confidence 99999999985 889996
No 9
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=99.77 E-value=2.7e-19 Score=142.86 Aligned_cols=90 Identities=26% Similarity=0.301 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC-CCCccHHH
Q psy9058 50 DLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA-PFRPCQLL 128 (142)
Q Consensus 50 ~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~-~~~p~~~l 128 (142)
+|+||++.++++||+.++++|+ +|++||.++..|+|+|+...|||+++|.+|+|+++++++.+.+.+++ +|+|+++|
T Consensus 174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~l 251 (293)
T 1zej_A 174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWL 251 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCHHH
Confidence 9999999999999999999998 99999999999999999999999999999999999999999998885 89999999
Q ss_pred HHHHHcc------CCCCCC
Q psy9058 129 LDHAKDS------SKKFYP 141 (142)
Q Consensus 129 ~~~~~~g------g~gfy~ 141 (142)
++|+++| |+|||+
T Consensus 252 ~~~v~~G~lG~Ktg~Gfy~ 270 (293)
T 1zej_A 252 QEKIKKGEVGVKAGKGIYE 270 (293)
T ss_dssp HHHHHTTCCBGGGTBSSSB
T ss_pred HHHHHCCCCccccCCEeee
Confidence 9999885 889995
No 10
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=99.76 E-value=1.4e-18 Score=146.88 Aligned_cols=92 Identities=24% Similarity=0.279 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHh-C-CCCC
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLY-G-APFR 123 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~-g-~~~~ 123 (142)
-+++|++||++.+++|||+.++++|+ +||++||.++..|+|||+ |||+++|.+|+|+.+++++.+.+.+ + ++|.
T Consensus 185 d~~Gfi~Nr~l~~~~~Ea~~l~~~g~-~~~~~id~a~~~~~G~p~---GP~~l~D~~Gld~~~~v~~~~~~~~~~~~~~~ 260 (483)
T 3mog_A 185 STPGFIVNRVARPYYSEAWRALEEQV-AAPEVIDAALRDGAGFPM---GPLELTDLIGQDVNFAVTCSVFNAFWQERRFL 260 (483)
T ss_dssp SCTTTTHHHHTHHHHHHHHHHHHTTC-SCHHHHHHHHHHTTCCSS---CHHHHHHHHCHHHHHHHHHHHHHHTTSCGGGC
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhcCCCCC---CHHHHHHHhchHHHHHHHHHHHHHhcCCCccC
Confidence 34789999999999999999999999 899999999999999999 9999999999999999999998876 3 5899
Q ss_pred ccHHHHHHHHcc------CCCCCC
Q psy9058 124 PCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 124 p~~~l~~~~~~g------g~gfy~ 141 (142)
|++++++|+++| |+|||.
T Consensus 261 ~~~~~~~~v~~g~lG~k~g~GfY~ 284 (483)
T 3mog_A 261 PSLVQQELVIGGRLGKKSGLGVYD 284 (483)
T ss_dssp CCHHHHHHHHTTCCBGGGTBSSSB
T ss_pred chHHHHHHHHCCCCceeCCCEeEE
Confidence 999999999875 899995
No 11
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=99.74 E-value=5.8e-19 Score=139.09 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhC-CCCC
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG-APFR 123 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g-~~~~ 123 (142)
.-.+++|+||++.++++||+.++++|+ +||++||.++..|+|+|+ |||+++|.+|+|++++++++ ..+ +++.
T Consensus 186 ~~~~g~i~nr~~~~~~~ea~~l~~~g~-~~~~~id~~~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~---~~~~~~~~ 258 (283)
T 4e12_A 186 KEKAGYVLNSLLVPLLDAAAELLVDGI-ADPETIDKTWRIGTGAPK---GPFEIFDIVGLTTAYNISSV---SGPKQREF 258 (283)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHT---SCHHHHHH
T ss_pred cCCCCEEehHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhccCCCc---CHHHHHHhccHHHHHHHHhc---cccCcccC
Confidence 346899999999999999999999998 899999999999999999 99999999999999998883 122 3567
Q ss_pred ccHHHHHHHHcc------CCCCCC
Q psy9058 124 PCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 124 p~~~l~~~~~~g------g~gfy~ 141 (142)
|++++++|+++| |+|||+
T Consensus 259 ~~~~~~~~v~~g~lG~k~g~Gfy~ 282 (283)
T 4e12_A 259 AAYLKENYIDKGKLGLATGEGFYR 282 (283)
T ss_dssp HHHHHHHTGGGTCCBGGGTBSSSB
T ss_pred chHHHHHHHHCCCCceeCCeEeec
Confidence 889999999885 899996
No 12
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=99.67 E-value=1.3e-16 Score=134.30 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCL-EETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPC 125 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll-~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~ 125 (142)
+++||+||++.++++||+.++ ++|+ +|++||.++. ++|||+ |||+++|.+|+|+.+++.+.+ ...|+
T Consensus 232 ~pGfi~Nril~~~~~EA~~l~~~~Ga--~~e~ID~a~~-~~G~pm---GPf~l~D~vGlD~~~~i~~~~------~~~~~ 299 (460)
T 3k6j_A 232 CKSFVFNRLLHVYFDQSQKLMYEYGY--LPHQIDKIIT-NFGFLM---GPMTVADMNGFDVMEKLKKEN------GLEPN 299 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHH-HHTBSS---CHHHHHHHHCTHHHHHHHHHS------CCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHh------ccCch
Confidence 689999999999999999999 7774 9999999998 899999 999999999999999987765 24567
Q ss_pred HHHHHHHHcc------CCCCCC
Q psy9058 126 QLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 126 ~~l~~~~~~g------g~gfy~ 141 (142)
++|++|+++| |+|||+
T Consensus 300 ~~l~~~v~~G~lG~KtG~GFY~ 321 (460)
T 3k6j_A 300 PIEKEMWRLKRYGRKTNKGFYK 321 (460)
T ss_dssp HHHHHHHHTTCCBGGGTBSSSE
T ss_pred HHHHHHHHCCCCeeecCCEEEE
Confidence 9999999875 899994
No 13
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=99.66 E-value=1.1e-16 Score=140.84 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCC-CCcc
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP-FRPC 125 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~-~~p~ 125 (142)
+++|++||++.+++||++.++++|+ +|++||.++ .++|||+ |||+++|.+|+|+.+++.+.+.+.++++ |.|
T Consensus 493 ~~Gfi~Nril~~~~~Ea~~l~~~G~--~~e~id~~~-~~~g~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~- 565 (725)
T 2wtb_A 493 CTGFAVNRMFFPYTQAAMFLVECGA--DPYLIDRAI-SKFGMPM---GPFRLCDLVGFGVAIATATQFIENFSERTYKS- 565 (725)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHSGGGCCCC-
T ss_pred CccHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhchHHHHHHHHHHHHhcCCccCCh-
Confidence 4889999999999999999999996 899999999 8999999 9999999999999999999999888777 888
Q ss_pred HHHHHHHHcc------CCCCCC
Q psy9058 126 QLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 126 ~~l~~~~~~g------g~gfy~ 141 (142)
+++++|+++| |+|||.
T Consensus 566 ~~l~~~v~~g~lG~k~g~GfY~ 587 (725)
T 2wtb_A 566 MIIPLMQEDKRAGEATRKGFYL 587 (725)
T ss_dssp THHHHHHTTC------------
T ss_pred HHHHHHHHCCCceecCCceeEe
Confidence 9999999875 889995
No 14
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=99.65 E-value=7.7e-17 Score=141.68 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCcc-
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPC- 125 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~- 125 (142)
+++|++||++.+++||++.++++|+ ++++||.++ .++|||+ |||+++|.+|+|+.+++++.+.+.++++|.|+
T Consensus 495 ~~Gfi~Nril~~~~~Ea~~l~~~G~--~~~~id~~~-~~~G~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~~ 568 (715)
T 1wdk_A 495 CPGFLVNRVLFPYFGGFAKLVSAGV--DFVRIDKVM-EKFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDR 568 (715)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSS
T ss_pred CCChhhhHHHHHHHHHHHHHHHCCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCCccCCCh
Confidence 4889999999999999999999996 899999999 8999999 99999999999999999999988877788888
Q ss_pred -HHHHHHHHcc------CCCCCC
Q psy9058 126 -QLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 126 -~~l~~~~~~g------g~gfy~ 141 (142)
+++++|+++| |+|||.
T Consensus 569 ~~~l~~~v~~g~lG~k~g~GfY~ 591 (715)
T 1wdk_A 569 RSAIDALYEAKRLGQKNGKGFYA 591 (715)
T ss_dssp CCHHHHHHHTTCCBTTTTBSSSE
T ss_pred HHHHHHHHhCchhhhcCCcEEEe
Confidence 8999999885 889994
No 15
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=99.61 E-value=3.7e-16 Score=137.95 Aligned_cols=91 Identities=24% Similarity=0.164 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC----
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA---- 120 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~---- 120 (142)
.-+++||+||++.++++||+++++||+ +|++||.++. ++|||+ |||+++|.+|+|+.+++.+.+....+.
T Consensus 493 kd~pGFi~NRi~~~~~~ea~~l~~eG~--~~~~id~a~~-~~G~pm---GPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~ 566 (742)
T 3zwc_A 493 GNCYGFVGNRMLAPYYNQGFFLLEEGS--KPEDVDGVLE-EFGFKM---GPFRVSDLAGLDVGWKIRKGQGLTGPSLPPG 566 (742)
T ss_dssp CCSTTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHTTSSSTTSCTT
T ss_pred CCCCCccHHHHhhHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---ChHHHHHHhCHHHHHHHHHHHHhhCcccCcc
Confidence 457899999999999999999999996 8999999885 699999 999999999999999999887543221
Q ss_pred -------CCCccHHHHHHHHcc------CCCCCC
Q psy9058 121 -------PFRPCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 121 -------~~~p~~~l~~~~~~g------g~gfy~ 141 (142)
.+.+++++++|+++| |+|||.
T Consensus 567 ~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~ 600 (742)
T 3zwc_A 567 TPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQ 600 (742)
T ss_dssp CCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSE
T ss_pred chhhhcccccccHHHHHHHHCCCccccCCCeeEE
Confidence 233567999999875 899994
No 16
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=99.50 E-value=1.7e-14 Score=121.13 Aligned_cols=89 Identities=25% Similarity=0.190 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHH---HH------
Q psy9058 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYE---NL------ 117 (142)
Q Consensus 47 ~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~---~~------ 117 (142)
.++++.||++.++++|+++++++|+ ++++||.++. ++|||+ |||+++|.+|+|+..++++.+. ..
T Consensus 216 ~~gfi~Nrll~~~~~ea~~l~~~G~--~~~~id~~~~-~~g~p~---Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~ 289 (463)
T 1zcj_A 216 CYGFVGNRMLAPYYNQGFFLLEEGS--KPEDVDGVLE-EFGFKM---GPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTP 289 (463)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---cHHHHHHHcchHHHHHHHHHHhhhccccccccc
Confidence 5889999999999999999999995 9999999998 899999 9999999999999999998772 11
Q ss_pred -hC-CCCCccHHHHHHHHcc------CCCCCC
Q psy9058 118 -YG-APFRPCQLLLDHAKDS------SKKFYP 141 (142)
Q Consensus 118 -~g-~~~~p~~~l~~~~~~g------g~gfy~ 141 (142)
.+ ..++++++|++|+++| |+|||.
T Consensus 290 ~~~~~~~~~~~~l~~~v~~g~lG~k~g~Gfy~ 321 (463)
T 1zcj_A 290 VRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQ 321 (463)
T ss_dssp TTEETTEECCTHHHHHHHTTCCBGGGTBSSEE
T ss_pred ccccccccchHHHHHHHHCCCCeeecCCeecc
Confidence 11 1223478999999875 889984
No 17
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=99.47 E-value=5e-14 Score=113.63 Aligned_cols=62 Identities=27% Similarity=0.213 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHH
Q psy9058 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKL 107 (142)
Q Consensus 45 ~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~ 107 (142)
.-+++||+||++.+++|||+++++||+ +|++|||.+|+.|+|+|+...|||+++|.+|++..
T Consensus 188 kd~pGFi~NRl~~~~~~EA~~lv~eGv-as~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~ 249 (319)
T 3ado_A 188 KEIDGFVLNRLQYAIISEAWRLVEEGI-VSPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGML 249 (319)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHH
T ss_pred CCCCCEeHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHH
Confidence 457999999999999999999999999 89999999999999998555599999999996543
No 18
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=99.19 E-value=2.8e-11 Score=97.33 Aligned_cols=67 Identities=25% Similarity=0.218 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHH
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSY 114 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l 114 (142)
-.++|++||++.++++||++++++|+ +||++||.++..|+|+|+...|||+++|..| +.+.+.++++
T Consensus 189 ~~~Gfi~Nrll~a~~~EA~~l~~~g~-~~~~~id~a~~~g~g~~~a~~GP~~~~dl~g-~g~~~~~~~~ 255 (319)
T 2dpo_A 189 EIDGFVLNRLQYAIISEAWRLVEEGI-VSPSDLDLVMSDGLGMRYAFIGPLETMHLNA-EGMLSYSDRY 255 (319)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHTTHHHHHTTSCHHHHHHHTT-TSHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHhCCCCCccccCHHHHHHhcC-chHHHHHHHH
Confidence 46889999999999999999999999 8999999999999999955559999999995 4444444433
No 19
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=91.60 E-value=0.0022 Score=50.65 Aligned_cols=50 Identities=4% Similarity=-0.163 Sum_probs=42.7
Q ss_pred HHHHHHH---HHHHHHHHH-------HHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCH
Q psy9058 48 DEDLQLR---MVSRFVNEA-------VLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGA 104 (142)
Q Consensus 48 ~~~i~~R---ll~~~~nEa-------~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~ 104 (142)
+++|++| .+.++++++ ..++++|+ .+++++|.++..+ ++ ||++++|.+|.
T Consensus 170 ~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~-~~~~~id~~~~~~---~~---~~~ei~~~~g~ 229 (317)
T 2ewd_A 170 SANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGL-ITQEQIDEIVCHT---RI---AWKEVADNLKT 229 (317)
T ss_dssp ECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTS-SCHHHHHHHHHHH---HH---HHHHHHHHHSS
T ss_pred eEEEEecCCCceeEEeeccccCCEEHHHHHhccC-CCHHHHHHHHHHH---Hh---hHHHHHHhhcC
Confidence 5677888 888999998 89999998 7999999988765 66 99999997665
No 20
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Probab=86.86 E-value=1.1 Score=34.13 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHH-cCccCCh---------HHHHHHHHhh-cCCCCCCCchhHHHHhhCHHHHHHHHHHHH
Q psy9058 55 MVSRFVNEAVLCLE-ETILNSP---------TDGDVGAVFG-LGFPPFSGGPFRWVDWYGADKLVQKMLSYE 115 (142)
Q Consensus 55 ll~~~~nEa~~ll~-eGv~~tp---------~diD~a~~~g-~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~ 115 (142)
.+..++.++..++. .|+ ... ..+|.++..| .+.+. ||++..|..+++..++.++.+.
T Consensus 170 ~~~~~~~~a~~~~~~~Gl-~~~~a~~~~l~~~~~~~~~~~gp~~~~t---gP~~r~D~~t~~~~l~~l~~~~ 237 (276)
T 2i76_A 170 FPVALAYLSKRIYTLLGL-DEPELLIHTLMKGVADNIKKMRVECSLT---GPVKRGDWQVVEEERREYEKIF 237 (276)
T ss_dssp THHHHHHHHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHSCGGGGCC---SHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHhcChHhhCC---CCcccCCHHHHHHHHHHHhccC
Confidence 56678888877777 788 666 7889988887 66677 9999999999999999998874
No 21
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=73.89 E-value=2.1 Score=31.94 Aligned_cols=57 Identities=5% Similarity=-0.110 Sum_probs=39.5
Q ss_pred HHHHHH--HHHHHHHHHHHHcCccCChHHH--------HHHHHhhc-CCCCCCCchhHHHHhhCHHHHHHHHHH
Q psy9058 51 LQLRMV--SRFVNEAVLCLEETILNSPTDG--------DVGAVFGL-GFPPFSGGPFRWVDWYGADKLVQKMLS 113 (142)
Q Consensus 51 i~~Rll--~~~~nEa~~ll~eGv~~tp~di--------D~a~~~g~-Gfp~~~gGp~~~~D~~G~~~~~~~l~~ 113 (142)
+.+++. ...+.|++ +.+.|+ +++++ +.++..+. +.+. ||++..|..+++..++.++.
T Consensus 180 l~~~~~~~~~~~~eal-~~~~Gl--~~~~~~~l~~~~~~~~~~~~~~~~~~---GP~~r~d~~~l~~~l~~l~~ 247 (266)
T 3d1l_A 180 FTCNFTNHMYALAAEL-LKKYNL--PFDVMLPLIDETARKVHELEPKTAQT---GPAIRYDENVIGNHLRMLAD 247 (266)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTTC--CGGGGHHHHHHHHHHHHHSCHHHHCC---STTTTTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH-HHHcCC--CHHHHHHHHHHHHHHHHhcChhhhCC---CCCccCCHHHHHHHHHHHhc
Confidence 566666 45556663 357888 78888 45555553 5566 99999999999888776643
No 22
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=50.17 E-value=9.7 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHH---HcCccCChHH--HHH
Q psy9058 51 LQLRMVSRFVNEAVLCL---EETILNSPTD--GDV 80 (142)
Q Consensus 51 i~~Rll~~~~nEa~~ll---~eGv~~tp~d--iD~ 80 (142)
.....+.+++++|.+++ ++|+ ++++| +|.
T Consensus 144 sh~nhLv~L~~~A~~ll~~~~~g~-a~~~d~~~~~ 177 (232)
T 3dfu_A 144 TYAGFLSTLQRDASYFLDEFLGDP-DVTSDIVMDS 177 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CChhhhhhhc
Confidence 45777888999999999 9999 89999 664
No 23
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=33.79 E-value=55 Score=24.44 Aligned_cols=35 Identities=9% Similarity=-0.350 Sum_probs=26.5
Q ss_pred HHHHHH----HHHHHHHHHHHcCccCChHHHHHHHHhhcC
Q psy9058 52 QLRMVS----RFVNEAVLCLEETILNSPTDGDVGAVFGLG 87 (142)
Q Consensus 52 ~~Rll~----~~~nEa~~ll~eGv~~tp~diD~a~~~g~G 87 (142)
++.++. .+++|++.+.+..- .++++++.++..+.+
T Consensus 175 ~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~~~~~ 213 (302)
T 2h78_A 175 CNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIMRRSSG 213 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHcCCC
Confidence 455554 48999998888765 489999998887654
No 24
>1fry_A Myeloid antimicrobial peptide; random-ordered coil-loop, antimicrobial protein; NMR {Synthetic} SCOP: j.93.1.1
Probab=28.09 E-value=14 Score=18.32 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=14.1
Q ss_pred CCCCCccccccceEeec
Q psy9058 3 FWCPPGRKSGKGYFVYA 19 (142)
Q Consensus 3 ~~~rlG~K~G~GfY~y~ 19 (142)
++-|||||-.-|.-+|.
T Consensus 2 glrrlgrkiahgvkkyg 18 (29)
T 1fry_A 2 GLRRLGRKIAHGVKKYG 18 (29)
T ss_dssp CCSSSSTTTSSSTTTTS
T ss_pred hHHHHhHHHhhhhhhcC
Confidence 57899999998887774
No 25
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=26.20 E-value=84 Score=19.30 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=21.1
Q ss_pred HHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhH
Q psy9058 62 EAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFR 97 (142)
Q Consensus 62 Ea~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~ 97 (142)
--..|...|+ |.++||.|+...-.... +|-.
T Consensus 38 K~~FL~sKGL--t~eEI~~Al~ra~~~~~---~p~~ 68 (70)
T 2w84_A 38 RRAFLKKKGL--TDEEIDMAFQQSGTAAD---EPSS 68 (70)
T ss_dssp HHHHHHHTTC--CHHHHHHHHHHHTCCCC---C---
T ss_pred HHHHHHHcCC--CHHHHHHHHHHccCCCC---CCcc
Confidence 3456677898 99999999988655555 6643
No 26
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=23.07 E-value=31 Score=26.28 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=7.5
Q ss_pred CCccccccceEeecCCC
Q psy9058 6 PPGRKSGKGYFVYAKGS 22 (142)
Q Consensus 6 rlG~K~G~GfY~y~~~~ 22 (142)
..|++.|.|.|.|++++
T Consensus 6 ~~~~~~G~g~~~~~dG~ 22 (261)
T 2f69_A 6 KDNIRHGVCWIYYPDGG 22 (261)
T ss_dssp -----CCCEEEECTTSC
T ss_pred cCCceecceEEEeCCCC
Confidence 34666666666666543
No 27
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=21.42 E-value=1.4e+02 Score=19.77 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHH
Q psy9058 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDV 80 (142)
Q Consensus 46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~ 80 (142)
-+.+++..-+-..++.|..+.+ |+ ++++||.
T Consensus 81 ~~~~el~~~V~~vvvhEiahh~--G~--~~e~l~~ 111 (114)
T 3e11_A 81 ETESEVIDEVRKTVVHEIAHHF--GI--DDERLHE 111 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT--TC--CHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHHHc--CC--CHHHHHH
Confidence 3677888888889999999999 88 8999986
No 28
>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural genomics, PSI, protein structure initiative; 1.35A {Streptococcus pneumoniae} SCOP: d.192.1.1
Probab=21.06 E-value=36 Score=22.24 Aligned_cols=15 Identities=27% Similarity=0.813 Sum_probs=12.3
Q ss_pred CCccccccceEeecC
Q psy9058 6 PPGRKSGKGYFVYAK 20 (142)
Q Consensus 6 rlG~K~G~GfY~y~~ 20 (142)
..|++.|+|+|-.++
T Consensus 41 ~~~k~~GRGaYvc~~ 55 (100)
T 1g2r_A 41 PTGKANGRGAYIKLD 55 (100)
T ss_dssp TTSCCCSEEEEEESC
T ss_pred CCCCCCCCEEEeCCC
Confidence 358999999999864
No 29
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=20.83 E-value=1.2e+02 Score=17.26 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Q psy9058 26 PVNDGALAILKKYSLQPQSALKDEDLQLRMVS 57 (142)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~ 57 (142)
++|+++.++|... ...-.=|+.+|+.|++.
T Consensus 5 EvDdelY~YIas~--t~~igEsaSdiLRRll~ 34 (50)
T 1xrx_A 5 EVDDELYSYIASH--TKHIGESASDILRRMLK 34 (50)
T ss_dssp EECHHHHHHHHTT--CSSTTCCHHHHHHHHHT
T ss_pred eecHHHHHHHHHh--chhhccCHHHHHHHHHc
Confidence 4688898888521 11223467778888874
Done!