RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9058
(142 letters)
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 164 bits (418), Expect = 5e-50
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNEAV 64
GRK+ KG++ Y ++ + + I+++ S + D+D+ M+ VNE
Sbjct: 312 GRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGY 371
Query: 65 LCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP--F 122
C+EE ++++ + D+ + G G+P SGGP R+ G DK+ ++ + +L +
Sbjct: 372 RCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAY 431
Query: 123 RPCQLLLDHAKDSSKKFYPS 142
L +
Sbjct: 432 IVADALKTANVSTGSSGSSG 451
Score = 26.1 bits (58), Expect = 4.4
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGAD 105
R++ + +++ + E P D + GF GP D G D
Sbjct: 239 RLLHVYFDQSQKLMYEYGY-LPHQID-KIITNFGFL---MGPMTVADMNGFD 285
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 162 bits (411), Expect = 5e-49
Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 7/141 (4%)
Query: 8 GRKSGKGYFVY-AKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNEA 63
G+K+GKG++ Y + + L +Y Q + E++ R + +NEA
Sbjct: 312 GQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEA 371
Query: 64 VLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP-- 121
LEE + P DV + G G+P GGP + G +++K+ Y
Sbjct: 372 FRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQ 431
Query: 122 FRPCQLLLDHAKDSSKKFYPS 142
P L
Sbjct: 432 LEPSDYLRRLVA-QGSPPLKE 451
Score = 29.5 bits (67), Expect = 0.31
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGAD 105
RM++ + N+ LEE P D D G + GF GPFR D G D
Sbjct: 223 RMLAPYYNQGFFLLEEGS--KPEDVD-GVLEEFGFK---MGPFRVSDLAGLD 268
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 165 bits (419), Expect = 1e-48
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 7/142 (4%)
Query: 7 PGRKSGKGYFVY-AKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNE 62
G+K+GKG++ Y + + L +Y Q + E++ R + +NE
Sbjct: 590 FGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINE 649
Query: 63 AVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP- 121
A LEE + P DV + G G+P GGP + G +++K+ Y
Sbjct: 650 AFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIP 709
Query: 122 -FRPCQLLLDHAKDSSKKFYPS 142
P L
Sbjct: 710 QLEPSDYLRRLVA-QGSPPLKE 730
Score = 28.4 bits (64), Expect = 0.88
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGAD 105
RM++ + N+ LEE P D D G + GF GPFR D G D
Sbjct: 502 RMLAPYYNQGFFLLEEGS--KPEDVD-GVLEEFGFK---MGPFRVSDLAGLD 547
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 157 bits (398), Expect = 9e-46
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 7 PGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ-------PQSALKDEDLQLRMVSRF 59
G + KG+++Y KA+P + ++K + L ++D+
Sbjct: 577 AGEATRKGFYLYDDKRKAKP-DPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPV 635
Query: 60 VNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYG 119
VNEA E I D D+ + G+GFPP+ GG W D G+ + ++ + YG
Sbjct: 636 VNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYG 695
Query: 120 APFRPCQLLLDHAKDSSKKFYP 141
F+PC L +
Sbjct: 696 EFFKPCAFLAERGS-KGVLLSA 716
Score = 28.0 bits (63), Expect = 1.3
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGAD 105
RM + A+ +E P D A+ G P GPFR D G
Sbjct: 500 RMFFPYTQAAMFLVECGA--DPYLID-RAISKFGMP---MGPFRLCDLVGFG 545
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 156 bits (397), Expect = 1e-45
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 8 GRKSGKGYFVYAKGSKARP---VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+GKG++ Y K + V+ L +LK Q + DED+ M+ E V
Sbjct: 582 GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-EQRDVTDEDIINWMMIPLCLETV 640
Query: 65 LCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRP 124
CLE+ I+ + + D+G V+G+GFP F GG R++D G + V Y GA + P
Sbjct: 641 RCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE-LGALYHP 699
Query: 125 CQLLLDHAKDSSKKFY 140
L + AK + + F+
Sbjct: 700 TAKLREMAK-NGQSFF 714
Score = 27.2 bits (61), Expect = 2.3
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVD 100
R++ + + + D + G+P GP +D
Sbjct: 502 RVLFPYFGGFAKLVSAGV--DFVRID-KVMEKFGWP---MGPAYLMD 542
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 52.7 bits (127), Expect = 4e-09
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLS 113
R V+ +NEA+ L++ + S D D G+ +P GP W G ++++ + +
Sbjct: 392 RTVAMIINEALDALQKGVA-SEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRLLEN 447
Query: 114 YENLYGAP-FRPCQLL----LDHAKDSSKKFY 140
++ YG +RPC LL L + S+ +
Sbjct: 448 LQHHYGEERYRPCSLLRQRALLESGYESEGHH 479
Score = 40.8 bits (96), Expect = 5e-05
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 59 FVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLS-YENL 117
+ +EA LEE + +P D G GFP GP D G D S +
Sbjct: 198 YYSEAWRALEEQV-AAPEVIDAALRDGAGFPM---GPLELTDLIGQDVNFAVTCSVFNAF 253
Query: 118 YGAP-FRPCQLL 128
+ F P +
Sbjct: 254 WQERRFLPSLVQ 265
Score = 28.8 bits (65), Expect = 0.66
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQ 43
G+KSG G + + +A + ++ +
Sbjct: 275 GKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKK 310
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
APC7539, PSI-2, protein structure initiative; 2.46A
{Archaeoglobus fulgidus dsm 4304}
Length = 110
Score = 47.3 bits (113), Expect = 5e-08
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 53 LRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKML 112
+ +NEAV +E + +P D D GL P GPF +GA+++ +++
Sbjct: 21 MDFTFVEINEAVKLVEMGV-ATPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKRLE 76
Query: 113 SYENLYGAP-FRPCQLL 128
+G F P + L
Sbjct: 77 ELAKQFGKKIFEPAKTL 93
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 43.4 bits (103), Expect = 6e-06
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLS 113
R + ++EA +EE + D D LG GP +D+ G D L
Sbjct: 178 RFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLY 235
Query: 114 -YENLYGAPFRPCQLL 128
Y+ F+P + L
Sbjct: 236 LYKRFGDEKFKPPEWL 251
Score = 33.4 bits (77), Expect = 0.014
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 8 GRKSGKGYFVYAKGSKARPVN 28
G K+GKG + Y + V
Sbjct: 261 GVKAGKGIYEYGPKAYEERVE 281
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 40.2 bits (95), Expect = 7e-05
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 59 FVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGAD--KLVQKMLSYEN 116
++ EA+ E S D D G G+P GPF +D+ G D K + +E
Sbjct: 214 YLMEAIRLYERGD-ASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGW-HEM 268
Query: 117 LYGAP-FRPCQLL 128
P +P L
Sbjct: 269 DAENPLHQPSPSL 281
Score = 26.0 bits (58), Expect = 4.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Query: 8 GRKSGKGYFVY 18
G+K+G+G++ Y
Sbjct: 291 GKKTGEGFYKY 301
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 32.3 bits (74), Expect = 0.032
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 54 RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLS 113
R+ ++EA +EE I+ SP+D D+ GLG GP + MLS
Sbjct: 197 RLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETMHLNAEG-----MLS 250
Query: 114 YENLYGAPFR 123
Y + Y +
Sbjct: 251 YSDRYSEGMK 260
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus
phage HP1} SCOP: d.163.1.1
Length = 170
Score = 31.7 bits (73), Expect = 0.041
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 12 GKGYFVYAKGSKAR--PVNDGALAILKKYS 39
K F K K R P++D +L K
Sbjct: 55 YKITFTNTKSKKNRTVPISDELFDMLPKKR 84
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein,
protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Length = 89
Score = 30.0 bits (68), Expect = 0.090
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 31 ALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV---LCLEETILNSPTDGDVGAVFGLG 87
AL L +S + +D +L +N GD A+F
Sbjct: 33 ALDALVGAHPALESRVFGDDGELY---DHINVLRNGEAAALGEATA---AGDELALF--- 83
Query: 88 FPPFSGG 94
PP SGG
Sbjct: 84 -PPVSGG 89
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG,
PSI-biology, structural genomics, midwest center for S
genomics, transferase; 1.90A {Helicobacter pylori}
Length = 74
Score = 28.1 bits (63), Expect = 0.34
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 60 VNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGG 94
+N+ ++ T L DGDV ++ PP GG
Sbjct: 47 LNDHLIDNLNTPLK---DGDVISLL----PPVCGG 74
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor
biosynthesis, transferase; 1.45A {Escherichia coli}
SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D*
3bii_D 1nvi_D
Length = 81
Score = 28.0 bits (63), Expect = 0.40
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 32 LAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPF 91
+ S + AL+D L + + VN+ L + L DGD A F PP
Sbjct: 32 RQHMAAQSDRWALALEDGKL---LAA--VNQ-TLVSFDHPLT---DGDEVAFF----PPV 78
Query: 92 SGG 94
+GG
Sbjct: 79 TGG 81
>1v8c_A MOAD related protein; riken structural genomics/proteomics
initiative, RSGI, structural genomics, protein binding;
1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Length = 168
Score = 28.0 bits (62), Expect = 0.77
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 31 ALAILKKYSLQPQSALKDEDLQLRMVSRFVNE---AVLCLEETILNSPTDGDVGAVFGLG 87
L L + + L + + VS F+ L T L+ G +F
Sbjct: 28 VLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLS---PGATLDLF--- 81
Query: 88 FPPFSGG 94
PP +GG
Sbjct: 82 -PPVAGG 87
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase,
MOAD, MOAE, transferase, molybdenum cofactor
biosynthesis; 2.00A {Staphylococcus aureus} PDB:
2qie_B*
Length = 77
Score = 26.4 bits (59), Expect = 1.2
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 60 VNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGG 94
VNE + + D A+ PP SGG
Sbjct: 51 VNE-EFVQKSDFIQ---PNDTVALI----PPVSGG 77
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase;
NMR {Thermoplasma acidophilum} PDB: 2k22_A
Length = 90
Score = 26.6 bits (59), Expect = 1.4
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 31 ALAILKKYSLQPQSALKDEDLQLRMVSR-FVNEA---VLCLEETILNSPTDGDVGAVFGL 86
L LK + + L VN + +T + D D +F
Sbjct: 30 LLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIK---DDDKIDLF-- 84
Query: 87 GFPPFSGG 94
PP +GG
Sbjct: 85 --PPVAGG 90
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics,
PSI, protein structure INI southeast collaboratory for
structural genomics; 1.51A {Pyrococcus furiosus} SCOP:
d.15.3.1
Length = 98
Score = 26.5 bits (59), Expect = 1.5
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 32 LAILKKYSLQPQSALKDEDLQLRMVSRF-VNEAVLCLEETILNSPTDGDVGAVFGLGFPP 90
+ +KK + + + E VN + L DGDV VF PP
Sbjct: 43 IEEIKKRHEKFKEEVFGEGYDEDADVNIAVNG-RYVSWDEELK---DGDVVGVF----PP 94
Query: 91 FSGG 94
SGG
Sbjct: 95 VSGG 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.1
Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 43/152 (28%)
Query: 17 VYAKGSKARPVNDGALAILKK--YSLQPQ------------------SALKDEDLQLRMV 56
V+AK + +R L++ L+P +Q +M
Sbjct: 125 VFAKYNVSRLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 57 SR-F------VNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQ 109
+ F N LE +L + + S R + +
Sbjct: 182 FKIFWLNLKNCNSPETVLE--MLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 110 KMLSYENLYGAPFRPCQLLLDHAKDSS--KKF 139
K YEN C L+L + +++ F
Sbjct: 239 KSKPYEN--------CLLVLLNVQNAKAWNAF 262
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster
binding fold with CXCX16CXCX8CXC binding MOTI electron
transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB:
2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Length = 117
Score = 26.1 bits (57), Expect = 3.3
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 105 DKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFY 140
+++ + ++ G+P PC+ D + F+
Sbjct: 37 AVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFW 72
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 25.2 bits (55), Expect = 9.0
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 62 EAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQ 109
+A++ L + D F G VDW G +
Sbjct: 71 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.447
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,208,675
Number of extensions: 120828
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 32
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)