RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9058
         (142 letters)



>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha
           subunit, C-terminal domain {Pseudomonas fragi [TaxId:
           296]}
          Length = 95

 Score = 86.0 bits (213), Expect = 1e-23
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 48  DEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKL 107
           DED+   M+     E V CLE+ I+ +  + D+G V+G+GFP F GG  R++D  G  + 
Sbjct: 4   DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEF 63

Query: 108 VQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFY 140
           V     Y    GA + P   L + AK + + F+
Sbjct: 64  VALADQYAE-LGALYHPTAKLREMAK-NGQSFF 94


>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha
           subunit, C-terminal domain {Pseudomonas fragi [TaxId:
           296]}
          Length = 124

 Score = 34.8 bits (79), Expect = 0.001
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 8   GRKSGKGYFVYAKGSKARP---VNDGALAILKK 37
           G+K+GKG++ Y    K +    V+   L +LK 
Sbjct: 86  GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKP 118



 Score = 25.1 bits (54), Expect = 2.6
 Identities = 9/86 (10%), Positives = 22/86 (25%), Gaps = 6/86 (6%)

Query: 54  RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLS 113
           R++  +       +   +        V     +    +  GP   +D  G D        
Sbjct: 6   RVLFPYFGGFAKLVSAGV------DFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDV 59

Query: 114 YENLYGAPFRPCQLLLDHAKDSSKKF 139
               +    +  +     A   +K+ 
Sbjct: 60  MAEGFPDRMKDDRRSAIDALYEAKRL 85


>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA
           dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 99

 Score = 29.1 bits (64), Expect = 0.086
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 54  RMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLS 113
           R++  ++ EA+   E     S  D D     G G+P    GPF  +D+ G D     +  
Sbjct: 6   RLLVPYLMEAIRLYERGD-ASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDG 61

Query: 114 YENLYGAPFRPC 125
           +  +        
Sbjct: 62  WHEMDAENPLHQ 73



 Score = 24.1 bits (51), Expect = 4.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)

Query: 8  GRKSGKGYFVY 18
          G+K+G+G++ Y
Sbjct: 88 GKKTGEGFYKY 98


>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD
          {Escherichia coli [TaxId: 562]}
          Length = 81

 Score = 26.1 bits (57), Expect = 0.77
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 13/63 (20%)

Query: 32 LAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPF 91
             +   S +   AL+D  L             L   +  L    DGD  A F    PP 
Sbjct: 32 RQHMAAQSDRWALALEDGKL------LAAVNQTLVSFDHPLT---DGDEVAFF----PPV 78

Query: 92 SGG 94
          +GG
Sbjct: 79 TGG 81


>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 87

 Score = 25.3 bits (55), Expect = 1.5
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 43 QSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGG 94
          +  L + +     VS F+    +   + +    + G    +F    PP +GG
Sbjct: 40 KEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLF----PPVAGG 87


>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor
          eIF4G {Human (Homo sapiens) [TaxId: 9606]}
          Length = 193

 Score = 25.2 bits (55), Expect = 3.2
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 10/42 (23%)

Query: 43 QSALKDEDLQLRMVS--------RFVNEAVLCLEETILNSPT 76
          ++AL +E+L+ +  +          + EAV C++E  L SP+
Sbjct: 1  KAALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQE--LASPS 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 549,086
Number of extensions: 23295
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 11
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)