BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9059
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Query: 83 QTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEI 142
+ Q + + + + ++ SN + L + ++ P +GMH+F+PV M L+E+
Sbjct: 406 KVKQAVLAEVENHVREDAILASNTSTISISLLAK-ALKRPENFVGMHFFNPVHMMPLVEV 464
Query: 143 ITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDL 202
I E++S A+ VA K GK I V D PGF R+L +++ G +
Sbjct: 465 IRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRI 524
Query: 203 DRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFK 262
D++ ++FG+P+G A L D VGID G H +++ F DR + ++ + E L K
Sbjct: 525 DKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQK 584
Query: 263 NKDGYY 268
N G+Y
Sbjct: 585 NGKGFY 590
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P L+IG H+FSP M+LLE+I + +S T A+ +++ K GK+ + V + GF R+
Sbjct: 165 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 224
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
L+ ++ +L+EG+ P+D+D + ++FGF +G +SD G+DVG I K
Sbjct: 225 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 275
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P L+IG H+FSP M+LLE+I + +S T A+ +++ K GK+ + V + GF R+
Sbjct: 429 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 488
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
L+ ++ +L+EG+ P+D+D + ++FGF +G +SD G+DVG I K
Sbjct: 489 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 539
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P L+IG H+FSP M+LLE+I + +S T A+ +++ K GK+ + V + GF R+
Sbjct: 444 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 503
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
L+ ++ +L+EG+ P+D+D + ++FGF +G +SD G+DVG I K
Sbjct: 504 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 554
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P L+IG H+FSP M+LLE+I + +S T A+ +++ K GK+ + V + GF R+
Sbjct: 444 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 503
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
L+ ++ +L+EG+ P+D+D + ++FGF +G +SD G+DVG I K
Sbjct: 504 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 554
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF +R+L L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVSRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV +L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 178 GLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 237
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P G L D VG+D I + +
Sbjct: 238 XEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLH 297
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 298 QPSPSLNKLVAENKFGKKTGEGFY 321
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+++I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P+G L D VG+D I + +
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV +L+E+I T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 145 GLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 204
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
EA+R+ + G + K D+D K G+P G L D VG+D I + +
Sbjct: 205 XEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLH 264
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
LN++V + K +G+Y
Sbjct: 265 QPSPSLNKLVAENKFGKKTGEGFY 288
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
G+H+F+PV M+L+E++ T TSQ T S V GK ++ KD PGF R+L L
Sbjct: 156 GLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGID 225
EA+R+ + G + K D+D K G+P+G L D VG+D
Sbjct: 216 IEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLD 256
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%)
Query: 125 IIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILST 184
I+G H+FSP M LLEI+ T TS + VG K K + V + GF R+
Sbjct: 445 IVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFP 504
Query: 185 MLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
AM +++ G P +DR +FG P+G L D VG V A + F +R
Sbjct: 505 YTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSER 561
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 22/240 (9%)
Query: 31 ETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE 90
ETC+RT+ L + + + + + SERL A+ L E P QT
Sbjct: 64 ETCERTLKRLIPVTDIHALAAADLV-IEAASERLEVKK--ALFAQLAEVCPPQT------ 114
Query: 91 RIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQ 150
+ T + + +A I+ P + G+H+F+P M+L+E+++ T+
Sbjct: 115 ---LLTTNTSSISITAIAA--------EIKNPERVAGLHFFNPAPVMKLVEVVSGLATAA 163
Query: 151 DTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEG-TSPKDLD-RLTKQ 208
+ + L GK + PGF R+ SEA R L+E +P+ +D L
Sbjct: 164 EVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDG 223
Query: 209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
GFP+G L+D +G DV + + F V E+V G L K+ G Y
Sbjct: 224 AGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVY 283
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 162 KQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEG-TSPKDLDRLTK-QFGFPVGAATLS 219
+QGK V+ + D PG R ++ +++EA+ LQ+G S +D+D + +P G
Sbjct: 374 QQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWG 433
Query: 220 DEVGIDVGAHIAKDLSKTFG-DRFSGGNLNVLNEMVEKGY 258
++G + ++L +G +R+ +L ++E GY
Sbjct: 434 AQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGY 473
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYT 178
++ P ++G+H+F+P + ++L+EII TS A+A K+ + V + F
Sbjct: 178 LRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVF 237
Query: 179 TRILSTMLSEAMRILQE-GTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKD 233
R+L ++ +++ E G P +D++ FGF +G T++D G DV + K+
Sbjct: 238 NRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKE 293
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYT 178
+ +P +G+H+ +P L+EI+ + T T A + GK V+ K
Sbjct: 119 LDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS--LV 176
Query: 179 TRILSTMLSEAMRILQEGTSPKDLDRLTKQ--------FGFPVGAATLSDEVGIDVGAHI 230
R + +LSEA R ++EG +D+DR+ K FG P+G D +G+DV +
Sbjct: 177 NRFNAAVLSEASRXIEEGVRAEDVDRVWKHHLGLLYTLFG-PLGNL---DYIGLDVAYYA 232
Query: 231 AKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
+ L K FGD +F L E ++KG + K G Y
Sbjct: 233 SLYLYKRFGDEKFKPPEW--LQEKIKKGEVGVKAGKGIY 269
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 76 LQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI---PIQTPHLIIGMHYFS 132
L+++I Q + +R+ + + + LM S A + +++ I P+ P Y+
Sbjct: 98 LKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPP-------YYI 150
Query: 133 PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMR 191
P L+E++ +T+ T A+ K G+ + V K+ GF R+ ++SEA R
Sbjct: 151 P-----LVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWR 205
Query: 192 ILQEG-TSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVL 250
+++EG SP DLD + + G +G H+ + ++ DR+S G +VL
Sbjct: 206 LVEEGIVSPSDLDLVMSE-----GLGMRYAFIGPLETMHLNAEGMLSYCDRYSEGIKHVL 260
Query: 251 N 251
Sbjct: 261 Q 261
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 126 IGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILST 184
I H +P + L+E++ +TS T A+ K G+ + V K+ GF R+
Sbjct: 142 IVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYA 201
Query: 185 MLSEAMRILQEG-TSPKDLDRLTKQFGFPVGAATLSDEVGIDVG-------AHIAKDLSK 236
++SEA R+++EG SP DLD +SD +G+ H+ +
Sbjct: 202 IISEAWRLVEEGIVSPSDLD------------LVMSDGLGMRYAFIGPLETMHLNAEGML 249
Query: 237 TFGDRFSGGNLNVLN 251
++ DR+S G VL
Sbjct: 250 SYCDRYSEGMKRVLK 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,114,628
Number of Sequences: 62578
Number of extensions: 332695
Number of successful extensions: 790
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 33
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)