Query psy9059
Match_columns 269
No_of_seqs 290 out of 2147
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 17:52:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1250 FadB 3-hydroxyacyl-CoA 100.0 6.7E-63 1.5E-67 456.2 19.3 210 51-269 68-282 (307)
2 KOG2304|consensus 100.0 8.7E-60 1.9E-64 414.3 9.6 211 51-269 81-296 (298)
3 PRK07819 3-hydroxybutyryl-CoA 100.0 8.6E-57 1.9E-61 413.2 21.4 210 51-269 70-285 (286)
4 TIGR02440 FadJ fatty oxidation 100.0 5.9E-57 1.3E-61 457.6 21.1 210 51-269 370-580 (699)
5 TIGR02437 FadB fatty oxidation 100.0 1.1E-56 2.3E-61 456.4 22.3 212 51-269 378-591 (714)
6 PRK11730 fadB multifunctional 100.0 1.9E-56 4E-61 454.9 21.7 212 51-269 378-591 (715)
7 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.7E-56 3.6E-61 456.2 21.3 212 51-269 400-612 (737)
8 PRK11154 fadJ multifunctional 100.0 4.9E-56 1.1E-60 451.5 21.2 210 51-269 375-585 (708)
9 PRK08293 3-hydroxybutyryl-CoA 100.0 4.4E-54 9.6E-59 394.1 23.1 213 51-269 69-285 (287)
10 PRK08269 3-hydroxybutyryl-CoA 100.0 5.5E-54 1.2E-58 399.6 21.7 212 50-269 61-281 (314)
11 PRK07066 3-hydroxybutyryl-CoA 100.0 1.3E-54 2.8E-59 404.7 16.1 213 50-268 67-294 (321)
12 PRK09260 3-hydroxybutyryl-CoA 100.0 8.7E-52 1.9E-56 378.8 22.1 211 51-269 66-279 (288)
13 PRK06035 3-hydroxyacyl-CoA deh 100.0 2E-51 4.3E-56 377.0 22.2 209 52-269 72-289 (291)
14 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.2E-51 2.7E-56 405.0 21.7 210 51-269 70-284 (503)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 2E-51 4.3E-56 375.2 21.6 209 52-269 69-281 (282)
16 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.6E-49 3.5E-54 390.5 22.3 210 51-269 72-286 (507)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 2.7E-49 5.8E-54 362.8 21.9 209 52-269 70-282 (292)
18 PLN02545 3-hydroxybutyryl-CoA 100.0 6E-49 1.3E-53 360.9 21.9 210 51-269 69-282 (295)
19 PRK06130 3-hydroxybutyryl-CoA 100.0 1.5E-42 3.3E-47 320.2 22.4 210 52-269 65-281 (311)
20 PRK07531 bifunctional 3-hydrox 100.0 6.8E-37 1.5E-41 300.3 18.8 191 40-238 56-254 (495)
21 KOG2305|consensus 100.0 3.1E-38 6.8E-43 278.4 7.8 166 53-223 71-242 (313)
22 PRK06129 3-hydroxyacyl-CoA deh 100.0 3.3E-35 7.1E-40 272.0 20.6 197 51-255 67-274 (308)
23 KOG1683|consensus 100.0 3.4E-37 7.4E-42 286.9 3.2 192 67-269 68-261 (380)
24 PRK08268 3-hydroxy-acyl-CoA de 100.0 3.3E-34 7.1E-39 282.1 18.4 161 94-258 336-500 (507)
25 PF02737 3HCDH_N: 3-hydroxyacy 100.0 3.8E-33 8.2E-38 240.7 9.4 116 51-173 64-180 (180)
26 PF00725 3HCDH: 3-hydroxyacyl- 100.0 3.7E-28 8E-33 188.7 9.9 93 175-269 1-96 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 1.6E-25 3.5E-30 220.4 14.6 131 126-258 366-499 (503)
28 TIGR02441 fa_ox_alpha_mit fatt 99.7 3.8E-17 8.3E-22 167.6 10.9 101 154-256 625-731 (737)
29 PRK11154 fadJ multifunctional 99.6 8.8E-15 1.9E-19 149.7 10.3 88 172-268 613-706 (708)
30 TIGR02440 FadJ fatty oxidation 99.6 1.1E-14 2.3E-19 149.0 10.5 84 173-258 607-696 (699)
31 PRK11730 fadB multifunctional 99.4 5.3E-13 1.2E-17 136.8 10.2 84 175-268 625-714 (715)
32 TIGR02437 FadB fatty oxidation 99.4 1E-12 2.2E-17 134.8 10.5 80 175-257 625-710 (714)
33 KOG1683|consensus 98.8 2.1E-09 4.7E-14 101.3 3.1 76 174-256 293-374 (380)
34 TIGR01505 tartro_sem_red 2-hyd 98.7 3.1E-08 6.7E-13 90.9 6.4 144 55-210 44-209 (291)
35 cd05297 GH4_alpha_glucosidase_ 98.6 8.6E-10 1.9E-14 107.0 -6.0 108 52-167 60-185 (423)
36 PRK11559 garR tartronate semia 98.6 1.7E-07 3.6E-12 86.0 7.5 147 53-211 45-213 (296)
37 PRK11199 tyrA bifunctional cho 98.5 4.3E-07 9.4E-12 86.8 9.6 105 58-170 134-240 (374)
38 PRK07417 arogenate dehydrogena 98.4 6.6E-06 1.4E-10 75.3 14.0 169 61-238 52-248 (279)
39 PRK12557 H(2)-dependent methyl 98.0 7E-05 1.5E-09 71.1 11.2 113 52-171 67-193 (342)
40 PLN02688 pyrroline-5-carboxyla 97.9 0.00027 5.9E-09 63.7 12.5 143 53-207 48-202 (266)
41 PRK06545 prephenate dehydrogen 97.8 0.00039 8.4E-09 66.1 13.9 175 56-238 50-250 (359)
42 PRK08655 prephenate dehydrogen 97.8 0.0011 2.4E-08 64.8 15.8 112 53-170 45-161 (437)
43 PRK07502 cyclohexadienyl dehyd 97.7 0.00077 1.7E-08 62.4 12.5 108 56-170 56-177 (307)
44 PRK11880 pyrroline-5-carboxyla 97.6 0.001 2.3E-08 59.9 12.4 143 54-206 50-202 (267)
45 PRK08507 prephenate dehydrogen 97.3 0.0073 1.6E-07 55.0 13.6 105 57-171 50-167 (275)
46 PRK14806 bifunctional cyclohex 97.0 0.011 2.4E-07 61.0 13.3 108 57-170 54-175 (735)
47 PTZ00082 L-lactate dehydrogena 96.8 0.00053 1.1E-08 64.5 1.3 71 52-129 61-153 (321)
48 cd01339 LDH-like_MDH L-lactate 96.7 0.00052 1.1E-08 63.5 0.9 72 51-129 52-140 (300)
49 PLN02256 arogenate dehydrogena 96.7 0.065 1.4E-06 50.1 14.5 111 54-170 79-202 (304)
50 PTZ00117 malate dehydrogenase; 96.6 0.0015 3.2E-08 61.3 3.3 71 52-129 60-147 (319)
51 PRK07679 pyrroline-5-carboxyla 96.3 0.083 1.8E-06 48.2 12.5 159 54-222 53-231 (279)
52 PRK08229 2-dehydropantoate 2-r 96.1 0.3 6.5E-06 45.5 15.2 112 52-175 60-180 (341)
53 PRK15057 UDP-glucose 6-dehydro 96.0 0.058 1.3E-06 52.1 10.6 143 51-206 58-232 (388)
54 COG0287 TyrA Prephenate dehydr 96.0 0.044 9.5E-07 50.7 9.1 115 61-182 59-182 (279)
55 TIGR01692 HIBADH 3-hydroxyisob 95.9 0.049 1.1E-06 50.0 8.9 143 54-210 40-206 (288)
56 PF02153 PDH: Prephenate dehyd 95.8 0.027 5.9E-07 51.1 7.1 104 61-170 40-156 (258)
57 PRK05479 ketol-acid reductoiso 95.6 0.2 4.3E-06 47.6 12.0 135 59-202 66-224 (330)
58 TIGR03026 NDP-sugDHase nucleot 95.5 0.09 2E-06 50.8 9.6 149 51-207 61-244 (411)
59 PRK00094 gpsA NAD(P)H-dependen 95.5 0.19 4.1E-06 46.2 11.2 143 52-205 57-238 (325)
60 PRK07634 pyrroline-5-carboxyla 94.9 0.31 6.7E-06 43.1 10.4 137 54-206 54-206 (245)
61 PRK06223 malate dehydrogenase; 94.8 0.012 2.6E-07 54.4 1.2 54 51-109 56-124 (307)
62 PRK00961 H(2)-dependent methyl 94.4 3.3 7.1E-05 38.8 15.8 129 39-177 106-249 (342)
63 TIGR01723 hmd_TIGR 5,10-methen 94.2 5 0.00011 37.7 16.6 127 39-175 104-245 (340)
64 PRK12491 pyrroline-5-carboxyla 94.1 0.83 1.8E-05 41.9 11.7 140 54-206 51-204 (272)
65 PRK07680 late competence prote 94.1 0.54 1.2E-05 42.7 10.4 139 53-205 49-201 (273)
66 TIGR00112 proC pyrroline-5-car 93.6 1.7 3.8E-05 39.0 12.6 141 54-206 31-184 (245)
67 COG2084 MmsB 3-hydroxyisobutyr 93.3 0.2 4.4E-06 46.6 6.2 146 53-210 44-211 (286)
68 PRK15461 NADH-dependent gamma- 93.1 0.52 1.1E-05 43.5 8.5 145 54-207 45-207 (296)
69 PRK06928 pyrroline-5-carboxyla 92.9 1.6 3.4E-05 40.0 11.3 141 54-206 52-205 (277)
70 PRK14619 NAD(P)H-dependent gly 92.7 0.46 9.9E-06 44.0 7.6 132 58-200 39-209 (308)
71 PRK06476 pyrroline-5-carboxyla 92.2 2.5 5.4E-05 37.9 11.6 134 54-206 49-193 (258)
72 PRK08818 prephenate dehydrogen 91.1 1.2 2.6E-05 43.0 8.7 104 57-170 42-153 (370)
73 cd00650 LDH_MDH_like NAD-depen 90.1 0.17 3.6E-06 45.9 1.8 48 51-103 55-116 (263)
74 PLN02712 arogenate dehydrogena 89.9 1.8 4E-05 44.8 9.4 112 54-170 412-535 (667)
75 TIGR00872 gnd_rel 6-phosphoglu 88.6 5.7 0.00012 36.6 10.9 143 58-209 48-212 (298)
76 PF01210 NAD_Gly3P_dh_N: NAD-d 87.4 1.3 2.8E-05 36.9 5.3 52 52-109 55-106 (157)
77 PRK14618 NAD(P)H-dependent gly 86.6 4.9 0.00011 37.3 9.3 140 53-205 61-237 (328)
78 TIGR01724 hmd_rel H2-forming N 85.3 3.2 7E-05 39.5 7.3 109 54-170 69-192 (341)
79 PLN02712 arogenate dehydrogena 83.7 6.6 0.00014 40.8 9.4 112 54-170 95-218 (667)
80 PRK15059 tartronate semialdehy 83.6 5.1 0.00011 37.0 7.8 146 54-210 43-209 (292)
81 PRK11861 bifunctional prephena 83.2 23 0.00049 36.7 13.1 85 86-170 11-109 (673)
82 TIGR02354 thiF_fam2 thiamine b 82.3 1.3 2.8E-05 38.8 3.1 42 58-104 102-143 (200)
83 PLN02353 probable UDP-glucose 81.4 30 0.00066 34.4 12.7 147 52-206 64-251 (473)
84 COG4074 Mth H2-forming N5,N10- 81.1 44 0.00096 30.6 13.9 125 24-163 93-232 (343)
85 TIGR03376 glycerol3P_DH glycer 79.7 3.2 6.9E-05 39.5 5.0 59 41-109 61-119 (342)
86 COG1004 Ugd Predicted UDP-gluc 79.4 22 0.00047 34.9 10.6 142 51-205 61-240 (414)
87 PRK12439 NAD(P)H-dependent gly 77.7 21 0.00046 33.6 9.9 123 52-185 63-197 (341)
88 TIGR00465 ilvC ketol-acid redu 77.1 24 0.00051 33.2 10.0 101 58-166 51-161 (314)
89 COG4007 Predicted dehydrogenas 75.4 14 0.0003 34.5 7.6 112 51-170 67-193 (340)
90 COG0240 GpsA Glycerol-3-phosph 75.4 4.2 9E-05 38.7 4.4 61 39-109 48-108 (329)
91 PLN02350 phosphogluconate dehy 74.4 15 0.00033 36.8 8.3 144 54-206 57-224 (493)
92 PRK09599 6-phosphogluconate de 73.2 16 0.00034 33.7 7.6 142 54-207 44-211 (301)
93 PTZ00142 6-phosphogluconate de 71.6 18 0.00039 36.0 8.1 139 54-206 51-218 (470)
94 PRK06444 prephenate dehydrogen 71.0 23 0.0005 31.1 7.8 84 68-170 31-119 (197)
95 PTZ00345 glycerol-3-phosphate 69.5 6.8 0.00015 37.7 4.4 61 39-109 70-132 (365)
96 PRK11064 wecC UDP-N-acetyl-D-m 67.4 35 0.00076 33.2 9.0 144 51-206 64-247 (415)
97 PRK09287 6-phosphogluconate de 65.4 26 0.00057 34.7 7.8 145 53-206 38-207 (459)
98 PTZ00431 pyrroline carboxylate 64.0 1.1E+02 0.0024 27.5 11.8 135 54-205 45-196 (260)
99 PRK12480 D-lactate dehydrogena 60.0 9 0.00019 36.2 3.3 53 53-109 185-237 (330)
100 KOG2711|consensus 52.6 44 0.00096 32.2 6.5 59 41-109 84-142 (372)
101 PLN02858 fructose-bisphosphate 52.5 88 0.0019 35.5 9.8 148 54-210 48-217 (1378)
102 PRK15182 Vi polysaccharide bio 51.9 2.4E+02 0.0052 27.6 13.6 146 51-206 62-243 (425)
103 cd05296 GH4_P_beta_glucosidase 51.3 9.8 0.00021 37.2 2.1 23 52-76 61-83 (419)
104 TIGR00873 gnd 6-phosphoglucona 51.3 1.2E+02 0.0025 30.3 9.6 144 54-206 48-215 (467)
105 COG0677 WecC UDP-N-acetyl-D-ma 50.9 2.6E+02 0.0057 27.7 12.3 151 51-206 70-251 (436)
106 PF07991 IlvN: Acetohydroxy ac 50.8 10 0.00022 32.6 1.8 46 57-109 51-97 (165)
107 PRK12490 6-phosphogluconate de 48.8 75 0.0016 29.2 7.4 141 54-207 44-210 (299)
108 PLN02858 fructose-bisphosphate 47.1 1.1E+02 0.0024 34.7 9.6 145 55-210 369-537 (1378)
109 TIGR01915 npdG NADPH-dependent 46.4 88 0.0019 27.2 7.2 104 58-170 60-187 (219)
110 PF03446 NAD_binding_2: NAD bi 41.0 12 0.00027 31.1 0.8 109 53-170 44-160 (163)
111 PF03721 UDPG_MGDP_dh_N: UDP-g 36.7 47 0.001 28.6 3.8 51 51-103 61-117 (185)
112 PRK12921 2-dehydropantoate 2-r 34.2 3E+02 0.0066 24.7 9.0 48 56-109 58-105 (305)
113 cd04728 ThiG Thiazole synthase 33.3 38 0.00081 31.1 2.7 138 58-208 23-197 (248)
114 KOG2738|consensus 33.3 46 0.00099 31.6 3.3 30 177-206 127-156 (369)
115 PRK05225 ketol-acid reductoiso 32.7 50 0.0011 33.1 3.7 102 54-166 86-200 (487)
116 COG0059 IlvC Ketol-acid reduct 31.7 4.7E+02 0.01 25.1 12.3 134 57-201 65-224 (338)
117 PRK00208 thiG thiazole synthas 31.0 38 0.00083 31.0 2.4 139 58-208 24-197 (250)
118 PF03059 NAS: Nicotianamine sy 29.4 1.3E+02 0.0029 27.9 5.7 85 51-135 173-263 (276)
119 PF10728 DUF2520: Domain of un 29.0 3.2E+02 0.0069 22.3 7.7 53 149-201 9-69 (132)
120 PF02056 Glyco_hydro_4: Family 28.2 48 0.001 28.9 2.5 24 51-76 58-81 (183)
121 CHL00162 thiG thiamin biosynth 27.6 39 0.00085 31.2 1.9 146 58-209 30-212 (267)
122 PF10727 Rossmann-like: Rossma 27.4 69 0.0015 26.1 3.1 65 58-130 60-127 (127)
123 PLN02527 aspartate carbamoyltr 27.3 37 0.0008 31.8 1.7 17 52-68 204-220 (306)
124 PRK12402 replication factor C 26.4 4.9E+02 0.011 23.6 10.1 38 197-234 237-274 (337)
125 PRK08605 D-lactate dehydrogena 24.5 1.1E+02 0.0023 28.8 4.3 52 54-109 188-239 (332)
126 KOG2949|consensus 24.4 52 0.0011 30.1 2.0 57 64-149 194-252 (306)
127 PF05430 Methyltransf_30: S-ad 23.2 35 0.00076 27.7 0.6 24 86-109 70-93 (124)
128 PF04015 DUF362: Domain of unk 23.2 1.1E+02 0.0023 26.4 3.7 33 145-177 17-49 (206)
129 KOG3446|consensus 23.0 80 0.0017 24.5 2.5 65 142-207 22-91 (97)
130 KOG3843|consensus 21.5 86 0.0019 29.5 2.9 120 71-206 128-265 (432)
131 KOG0409|consensus 21.4 5.5E+02 0.012 24.5 8.2 149 55-211 80-247 (327)
132 PHA02978 hypothetical protein; 21.3 37 0.0008 27.3 0.4 29 51-79 94-122 (135)
133 PRK15076 alpha-galactosidase; 21.2 77 0.0017 31.1 2.7 25 51-77 60-84 (431)
134 TIGR00670 asp_carb_tr aspartat 21.2 2E+02 0.0044 26.8 5.4 17 52-68 202-218 (301)
No 1
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=6.7e-63 Score=456.21 Aligned_cols=210 Identities=32% Similarity=0.572 Sum_probs=198.3
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
-++|++..+++ ++.++| ||||+|+||+++| +++|++|+++++||||||||||++ |++++ +.++||+||+|+|
T Consensus 68 l~~i~~~~~~~-~l~~~D--lVIEAv~E~levK--~~vf~~l~~~~~~~aIlASNTSsl--~it~ia~~~~rper~iG~H 140 (307)
T COG1250 68 LARITPTTDLA-ALKDAD--LVIEAVVEDLELK--KQVFAELEALAKPDAILASNTSSL--SITELAEALKRPERFIGLH 140 (307)
T ss_pred HhhccccCchh-HhccCC--EEEEeccccHHHH--HHHHHHHHhhcCCCcEEeeccCCC--CHHHHHHHhCCchhEEEEe
Confidence 57888888888 786655 9999999999999 999999999999999999999999 77885 6889999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK- 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~- 207 (269)
|||||++|||||||+|.+|++++++++.+|++++||.|++++|.||||+||++.++++||++++.+|+ |+++||++|+
T Consensus 141 FfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~ 220 (307)
T COG1250 141 FFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQ 220 (307)
T ss_pred ccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999777999999999999999999999999998 9999999999
Q ss_pred hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC--CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD--RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~--~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+|+|||||+++|++|+|+.+++++.+++.+++ .|. +++++++|++.|++|+|||+|||+
T Consensus 221 ~~G~pmGpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~--~~~~~~~~v~~g~lG~Ksg~GfY~ 282 (307)
T COG1250 221 GLGLPMGPFELADLIGLDVMLHIMKVLNETLGDDPYYR--PPPLLRKLVEAGRLGRKSGKGFYD 282 (307)
T ss_pred ccCCCccHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc--ccHHHHHHHhcccccccCCCccee
Confidence 999999999999999999999999999988884 343 679999999999999999999996
No 2
>KOG2304|consensus
Probab=100.00 E-value=8.7e-60 Score=414.33 Aligned_cols=211 Identities=28% Similarity=0.504 Sum_probs=201.3
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
-.||..++++++++++|| +|+|++.|++|+| +++|++|+..|+++||++||||++ .++++ .++++|.||.|+|
T Consensus 81 l~ri~~~tnv~~~v~dad--liiEAivEn~diK--~~lF~~l~~~ak~~~il~tNTSSl--~lt~ia~~~~~~srf~GlH 154 (298)
T KOG2304|consen 81 LDRIKTSTNVSDAVSDAD--LIIEAIVENLDIK--RKLFKDLDKIAKSSTILATNTSSL--SLTDIASATQRPSRFAGLH 154 (298)
T ss_pred HHHHHHcCCHHHhhhhhH--HHHHHHHHhHHHH--HHHHHHHHhhcccceEEeecccce--eHHHHHhhccChhhhceee
Confidence 457889999999997766 9999999999999 999999999999999999999998 56775 6899999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK- 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~- 207 (269)
||||+..|.|||||+++.||++|......|++.+||+||-+||.||||+||++.++++||+++++.|. |-+|||.+|+
T Consensus 155 FfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMkl 234 (298)
T KOG2304|consen 155 FFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKL 234 (298)
T ss_pred ccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hcCCCchhhHHHHhhchHHHHHHHHHHHHHhC-C-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG-D-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g-~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|.|+||||||+.|.+|+|+...+|+-|++.+. + .|. |+|++.++|++|++|+|+|+|||+
T Consensus 235 GagyPMGPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~--psPll~klVaegklGrKtg~GfY~ 296 (298)
T KOG2304|consen 235 GAGYPMGPFELADYVGLDTCKFVMDGWHEGYPEDSLFA--PSPLLDKLVAEGKLGRKTGEGFYK 296 (298)
T ss_pred cCCCCCChHHHHHHhhHHHHHHHHHHHHhcCCcccccC--CChHHHHHHhccccccccCcccee
Confidence 99999999999999999999999999999884 3 676 689999999999999999999995
No 3
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=8.6e-57 Score=413.21 Aligned_cols=210 Identities=24% Similarity=0.430 Sum_probs=199.1
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcC-CCCcEEecCCCCCccccccc-CCCCCCCeEEEe
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYT-YSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGM 128 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~-~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~ 128 (269)
.++|++++++ ++++++| +|+|||||++++| +++|++++++| ++++||+||||++ |++.+ ....+|+|++++
T Consensus 70 ~~~l~~~~~~-~~~~~~d--~ViEav~E~~~~K--~~l~~~l~~~~~~~~~il~snTS~~--~~~~la~~~~~~~r~~g~ 142 (286)
T PRK07819 70 LARLRFTTDL-GDFADRQ--LVIEAVVEDEAVK--TEIFAELDKVVTDPDAVLASNTSSI--PIMKLAAATKRPGRVLGL 142 (286)
T ss_pred HhCeEeeCCH-HHhCCCC--EEEEecccCHHHH--HHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCccEEEE
Confidence 5789999999 6676655 9999999999999 99999999999 9999999999998 77775 688999999999
Q ss_pred eccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHH-hCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q psy9059 129 HYFSPVDKMQLLEIITTEQTSQDTAASAVAVGL-KQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLT 206 (269)
Q Consensus 129 HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~-~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~ 206 (269)
|||||++.+|+|||++++.|++++++++..|++ .+||.|++++|.||||+||++.+++|||++|+++|+ |++|||+++
T Consensus 143 hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~ 222 (286)
T PRK07819 143 HFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAM 222 (286)
T ss_pred ecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999999998 499999999999999999999999999999999999 999999999
Q ss_pred H-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 207 K-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 207 ~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
+ |+|+|+|||+++|.+|+|.+.++++.+++.+++ +|. +++++++|+++|++|+|+|+|||+
T Consensus 223 ~~g~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~--p~~~l~~~v~~g~~G~k~g~GfY~ 285 (286)
T PRK07819 223 VLGCAHPMGPLRLSDLVGLDTVKAIADSMYEEFKEPLYA--PPPLLLRMVEAGLLGKKSGRGFYT 285 (286)
T ss_pred HhCCCCCCCHHHHHHHhccHHHHHHHHHHHHHcCCCCCC--CCHHHHHHHHCCCCcccCCCEecc
Confidence 8 999999999999999999999999999999986 676 578999999999999999999995
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=5.9e-57 Score=457.59 Aligned_cols=210 Identities=37% Similarity=0.592 Sum_probs=200.8
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++|+++++++ +++++| +|||||||++++| +++|++|+++|++||||+||||++ |++++ +.+.+|+||+|+|
T Consensus 370 ~~~i~~~~~~~-~~~~ad--lViEav~E~l~~K--~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~~g~H 442 (699)
T TIGR02440 370 MALITGTTDYR-GFKDVD--IVIEAVFEDLALK--HQMVKDIEQECAAHTIFASNTSSL--PIGQIAAAASRPENVIGLH 442 (699)
T ss_pred HcCeEEeCChH-HhccCC--EEEEeccccHHHH--HHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHhcCCcccEEEEe
Confidence 47899999994 776655 9999999999999 999999999999999999999999 78885 6889999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF 209 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~ 209 (269)
|||||+++|+||||+|+.||+++++++.+|++++||.||+++|.||||+|||+.+++|||++++++|++++|||++++++
T Consensus 443 ffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~ 522 (699)
T TIGR02440 443 YFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKF 522 (699)
T ss_pred cCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+|+|||+++|.+|+|++.++++.+++.+|++|. +++++++|+++|++|+|||+|||+
T Consensus 523 G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~~~--~~~~l~~~v~~G~lG~ksg~GfY~ 580 (699)
T TIGR02440 523 GFPVGPITLLDEVGIDVGAKISPILEAELGERFK--APAVFDKLLSDDRKGRKNGKGFYL 580 (699)
T ss_pred CCCcCHHHHHHHhchHHHHHHHHHHHHhcCCCCC--CcHHHHHHHHCCCCcccCCcEEEe
Confidence 9999999999999999999999999999999887 578999999999999999999995
No 5
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.1e-56 Score=456.40 Aligned_cols=212 Identities=29% Similarity=0.518 Sum_probs=199.3
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++|+++.++ ++++++| +|||||+|++++| +++|++|+++|++||||+||||++ |++++ ..+++|+||+|+|
T Consensus 378 ~~~i~~~~~~-~~~~~aD--lViEav~E~l~~K--~~vf~~l~~~~~~~~ilasnTS~l--~i~~ia~~~~~p~r~ig~H 450 (714)
T TIGR02437 378 LNGITPTLSY-AGFDNVD--IVVEAVVENPKVK--AAVLAEVEQHVREDAILASNTSTI--SISLLAKALKRPENFCGMH 450 (714)
T ss_pred HhCeEEeCCH-HHhcCCC--EEEEcCcccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEEe
Confidence 4789999999 5675555 9999999999999 999999999999999999999998 88886 6899999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-h
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTK-Q 208 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~-g 208 (269)
||||++.|||||||+|+.||+++++++.+|++++||+||+++|+||||+|||+.++++||++|+++|++++|||++|+ +
T Consensus 451 ff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~ 530 (714)
T TIGR02437 451 FFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQ 530 (714)
T ss_pred cCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
+|+|||||+++|.+|+|+..++++.+...+++++...+++++++|+++|++|+|||+|||+
T Consensus 531 ~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~ 591 (714)
T TIGR02437 531 FGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYA 591 (714)
T ss_pred CCCccCHHHHHHhhhHHHHHHHHHHHHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEe
Confidence 9999999999999999999999999998888765322468999999999999999999995
No 6
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.9e-56 Score=454.93 Aligned_cols=212 Identities=28% Similarity=0.494 Sum_probs=200.0
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++|++++++ ++++++| +|+|||||++++| |++|++|+++|+++|||+||||++ |++++ +.+.+|+||+|+|
T Consensus 378 ~~~i~~~~~~-~~~~~aD--lViEav~E~l~~K--~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~~g~H 450 (715)
T PRK11730 378 LSSIRPTLDY-AGFERVD--VVVEAVVENPKVK--AAVLAEVEQKVREDTILASNTSTI--SISLLAKALKRPENFCGMH 450 (715)
T ss_pred HhCeEEeCCH-HHhcCCC--EEEecccCcHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCCccEEEEe
Confidence 5789999999 5676655 9999999999999 999999999999999999999998 88885 6889999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-h
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTK-Q 208 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~-g 208 (269)
||||++.|||||||+|+.||+++++.+.+|++++||.||+++|+||||+|||+.+++|||++|+++|.|++|||++++ +
T Consensus 451 ff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~ 530 (715)
T PRK11730 451 FFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQ 530 (715)
T ss_pred cCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred cCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
+|+|+|||+++|.+|+|++.+++++++..+++++...+++++++|+++|++|+|||+|||+
T Consensus 531 ~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~ 591 (715)
T PRK11730 531 FGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYR 591 (715)
T ss_pred CCCccCHHHHHHhhchHHHHHHHHHHHHhcCCccccchhHHHHHHHHCCCCccccCCEeEe
Confidence 9999999999999999999999999999888764333578999999999999999999995
No 7
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.7e-56 Score=456.17 Aligned_cols=212 Identities=50% Similarity=0.832 Sum_probs=200.8
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++|+++++++ +++++| +|||||+|++++| +++|++|+++|+++|||+||||+| |++++ +.+.+|+||+|+|
T Consensus 400 ~~~i~~~~~~~-~~~~aD--lViEAv~E~l~~K--~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~ig~H 472 (737)
T TIGR02441 400 LSNLTPTLDYS-GFKNAD--MVIEAVFEDLSLK--HKVIKEVEAVVPPHCIIASNTSAL--PIKDIAAVSSRPEKVIGMH 472 (737)
T ss_pred HhCeEEeCCHH-HhccCC--eehhhccccHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCccceEEEe
Confidence 47899999995 676555 9999999999999 999999999999999999999998 78886 6899999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF 209 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~ 209 (269)
||||++.|||||||++++||+++++++.+|++++||.||+++|+||||+||++.+++|||++|+++|++++|||++++++
T Consensus 473 ff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~ 552 (737)
T TIGR02441 473 YFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKF 552 (737)
T ss_pred ccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+|||||+++|.+|+|++.++++++...++++|...+++++++|+++|++|+|||+|||+
T Consensus 553 G~p~GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~ 612 (737)
T TIGR02441 553 GFPVGAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFI 612 (737)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEE
Confidence 999999999999999999999999999998887422578999999999999999999995
No 8
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.9e-56 Score=451.48 Aligned_cols=210 Identities=36% Similarity=0.604 Sum_probs=200.9
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++|++++++ ++++++| +|+|||+|++++| +++|++|+++|+|||||+||||++ |++++ +.+.+|+||+|+|
T Consensus 375 ~~~i~~~~~~-~~~~~aD--lViEav~E~~~~K--~~v~~~le~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~ig~H 447 (708)
T PRK11154 375 MALISGTTDY-RGFKHAD--VVIEAVFEDLALK--QQMVAEVEQNCAPHTIFASNTSSL--PIGQIAAAAARPEQVIGLH 447 (708)
T ss_pred HhcEEEeCCh-HHhccCC--EEeecccccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhcCcccceEEEe
Confidence 4789999999 6786655 9999999999999 999999999999999999999998 88886 6889999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF 209 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~ 209 (269)
||||++++||||||+|++||+++++.+.+|++++||.|++++|.||||+|||+.+++|||++|+++|++++|||++++++
T Consensus 448 ff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~ 527 (708)
T PRK11154 448 YFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKF 527 (708)
T ss_pred cCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|||+|||+++|.+|+|.+.++++.+++.++++|. +++++++|+++|++|+|||+|||+
T Consensus 528 G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~GfY~ 585 (708)
T PRK11154 528 GFPVGPITLLDEVGIDVGTKIIPILEAALGERFS--APAAFDKLLNDDRKGRKNGRGFYL 585 (708)
T ss_pred CCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHCCCCcccCCceEEE
Confidence 9999999999999999999999999999998887 568999999999999999999995
No 9
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.4e-54 Score=394.11 Aligned_cols=213 Identities=21% Similarity=0.342 Sum_probs=200.5
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++|+++++++++++++| +|+||+||++++| +++|++|++++++++||+||||++ +++++ ..+.+|+|++++|
T Consensus 69 ~~~i~~~~d~~~a~~~aD--lVieavpe~~~~k--~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~vg~H 142 (287)
T PRK08293 69 LNRITLTTDLAEAVKDAD--LVIEAVPEDPEIK--GDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKFLALH 142 (287)
T ss_pred HcCeEEeCCHHHHhcCCC--EEEEeccCCHHHH--HHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccEEEEc
Confidence 478999999999997766 9999999999999 999999999999999999999998 56664 6788999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~ 207 (269)
||||++.+|+|||++++.|++++++++.+|++.+||.|+++ +|.||||+||++.+++|||++++++|+ |++|||++|+
T Consensus 143 f~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~ 222 (287)
T PRK08293 143 FANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWM 222 (287)
T ss_pred CCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 799999999999999999999999999 9999999997
Q ss_pred -hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 -QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 -g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+|+|+|||+++|.+|+|.+.++++++++.+++++...+++++++|+++|++|+|||+|||+
T Consensus 223 ~~~g~~~Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~ 285 (287)
T PRK08293 223 IATGAPMGPFGILDIVGLDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYN 285 (287)
T ss_pred hccCCCcCHHHHHHHhchHHHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCcccc
Confidence 99999999999999999999999999999998854212579999999999999999999996
No 10
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.5e-54 Score=399.62 Aligned_cols=212 Identities=19% Similarity=0.340 Sum_probs=200.7
Q ss_pred CCcCeEEecC--HHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEE
Q psy9059 50 SHTGITYLYT--YSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLII 126 (269)
Q Consensus 50 ~~~~l~~~~~--~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i 126 (269)
..++|+++.+ ..++++++| +|+|||||++++| +++|++|++++++++||+||||++ +++++ ..+.||+|++
T Consensus 61 ~~~~i~~~~~~~~~~a~~~aD--~ViEav~E~~~~K--~~~f~~l~~~~~~~~ilaSntS~~--~~~~la~~~~~p~r~~ 134 (314)
T PRK08269 61 VLARIAVVARDGAADALADAD--LVFEAVPEVLDAK--REALRWLGRHVDADAIIASTTSTF--LVTDLQRHVAHPERFL 134 (314)
T ss_pred HHhCeEeecCcchHHHhccCC--EEEECCcCCHHHH--HHHHHHHHhhCCCCcEEEEccccC--CHHHHHhhcCCcccEE
Confidence 3578999976 778897766 9999999999999 999999999999999999999998 77785 6789999999
Q ss_pred EeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHH
Q psy9059 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRL 205 (269)
Q Consensus 127 ~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a 205 (269)
|+||||||+++|+|||++++.|++++++++..+++.+||.|++++|.|||++||++.++++||++++++|+ ++++||.+
T Consensus 135 g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a 214 (314)
T PRK08269 135 NAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKA 214 (314)
T ss_pred EEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HH-hcCCC---chhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 206 TK-QFGFP---VGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 206 ~~-g~G~p---~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
++ |+|+| +|||+++|.+|++++.++++.+++.+++ +|. +++++++|+++|++|+|||+|||+
T Consensus 215 ~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~--p~~~l~~~v~~g~~G~ksG~GfY~ 281 (314)
T PRK08269 215 IRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFA--PPAIVVRNMEEGRDGLRTGAGFYD 281 (314)
T ss_pred HHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHCCCCcccCCCccee
Confidence 98 99999 5999999999999999999999998887 787 579999999999999999999995
No 11
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-54 Score=404.75 Aligned_cols=213 Identities=16% Similarity=0.258 Sum_probs=188.2
Q ss_pred CCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEe
Q psy9059 50 SHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGM 128 (269)
Q Consensus 50 ~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~ 128 (269)
..++|++++|+++++++|| +|||||||++++| +++|++|++++++++||+||||++ +++++ +.+++|+||+++
T Consensus 67 ~~~~i~~~~~l~~av~~aD--lViEavpE~l~vK--~~lf~~l~~~~~~~aIlaSnTS~l--~~s~la~~~~~p~R~~g~ 140 (321)
T PRK07066 67 SPARLRFVATIEACVADAD--FIQESAPEREALK--LELHERISRAAKPDAIIASSTSGL--LPTDFYARATHPERCVVG 140 (321)
T ss_pred HHhhceecCCHHHHhcCCC--EEEECCcCCHHHH--HHHHHHHHHhCCCCeEEEECCCcc--CHHHHHHhcCCcccEEEE
Confidence 3579999999999997766 9999999999999 999999999999999999999998 67774 789999999999
Q ss_pred eccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q psy9059 129 HYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLT 206 (269)
Q Consensus 129 HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~ 206 (269)
||||||+++||||||+|++||+++++++.+|++++||.||++ ||+||||+|||+.+++|||++++++|+ |++|||++|
T Consensus 141 HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~ 220 (321)
T PRK07066 141 HPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI 220 (321)
T ss_pred ecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999 899999999999999999999999999 999999999
Q ss_pred H-hcCCC---chhhHHHHhhchHH-HHHHHHHHHHHhCCCCC-CChhHHHHHHHH------cCCCCCCCCCccC
Q psy9059 207 K-QFGFP---VGAATLSDEVGIDV-GAHIAKDLSKTFGDRFS-GGNLNVLNEMVE------KGYLDFKNKDGYY 268 (269)
Q Consensus 207 ~-g~G~p---~GPf~~~D~~Gld~-~~~~~~~l~~~~g~~~~-~~~~~lL~~lv~------~G~lG~ksG~GFY 268 (269)
+ |+|+| +|||+++|++|+|. +.+.++++.+.+...|+ ...+++..++++ ++.+|.+++.++|
T Consensus 221 ~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (321)
T PRK07066 221 RFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALE 294 (321)
T ss_pred HhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 8 99998 79999999999997 44444555444321111 013456666666 6899999998886
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=8.7e-52 Score=378.84 Aligned_cols=211 Identities=28% Similarity=0.464 Sum_probs=200.9
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++++++.+++++++++| +|+||+||++++| +.+|++|++++++++||+||||++ +++.+ +.+.+|+|++++|
T Consensus 66 ~~~i~~~~~~~~~~~~aD--~Vi~avpe~~~~k--~~~~~~l~~~~~~~~il~~~tSt~--~~~~l~~~~~~~~r~~g~h 139 (288)
T PRK09260 66 LARLSYSLDLKAAVADAD--LVIEAVPEKLELK--KAVFETADAHAPAECYIATNTSTM--SPTEIASFTKRPERVIAMH 139 (288)
T ss_pred HhCeEEeCcHHHhhcCCC--EEEEeccCCHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCcccEEEEe
Confidence 457899999999997766 9999999999999 999999999999999999999998 55664 6789999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK- 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~- 207 (269)
||||++.++|+|+++|+.|++++++++..+++.+||.|++++|.|||++||++.+++|||++++++|+ +++|||++++
T Consensus 140 ~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~ 219 (288)
T PRK09260 140 FFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRL 219 (288)
T ss_pred cCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999998
Q ss_pred hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+|||+|||+++|.+|++.+.++++.+++.++++|. +++++.+|+++|++|+|||+|||+
T Consensus 220 g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~g~~G~k~g~Gfy~ 279 (288)
T PRK09260 220 GLNFPMGPLELGDLVGLDTRLNNLKYLHETLGEKYR--PAPLLEKYVKAGRLGRKTGRGVYD 279 (288)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHCCCCccccCCEEEE
Confidence 999999999999999999999999999999999887 578999999999999999999995
No 13
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2e-51 Score=376.96 Aligned_cols=209 Identities=33% Similarity=0.554 Sum_probs=197.2
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY 130 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf 130 (269)
.++++++++ ++++++| +|+||+||++++| +++|++|++++++++||+||||++ +++++ +.+.+|+|++++||
T Consensus 72 ~~i~~~~~~-~~~~~aD--lVieav~e~~~~k--~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf 144 (291)
T PRK06035 72 ARIRTSTSY-ESLSDAD--FIVEAVPEKLDLK--RKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHW 144 (291)
T ss_pred hCcEeeCCH-HHhCCCC--EEEEcCcCcHHHH--HHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEec
Confidence 467888888 6786655 9999999999999 999999999999999999999998 67775 57789999999999
Q ss_pred cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059 131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q 208 (269)
Q Consensus 131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g 208 (269)
|||++.+++||+++++.|++++++++.++++.+||.|++++|.|||++||++.+++|||++++++|+ |++|||++++ +
T Consensus 145 ~~P~~~~~~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 145 FNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred CCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999997 9
Q ss_pred cCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCC-----CCccCC
Q psy9059 209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKN-----KDGYYP 269 (269)
Q Consensus 209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ks-----G~GFY~ 269 (269)
+|+|+|||+++|.+|+|++.++++.+++.+++ +|. ++++|++|+++|++|+|| |+|||+
T Consensus 225 ~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~--~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~ 289 (291)
T PRK06035 225 FGFPMGPFELMDIIGIDTVYHIAEYLYEETGDPQFI--PPNSLKQMVLNGYVGDKKVKYGSKGGWFD 289 (291)
T ss_pred CCCccCHHHHHHHhhHHHHHHHHHHHHHHcCCCcCC--ccHHHHHHHHCCCCcCCCCCCCCCceeee
Confidence 99999999999999999999999999999987 566 578999999999999999 999995
No 14
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.2e-51 Score=405.01 Aligned_cols=210 Identities=24% Similarity=0.396 Sum_probs=196.1
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.+++++++++++ +.+ ||+|+|||||++++| +++|++|+++|++++||+||||++ +++++ +.+.+|+|++|+|
T Consensus 70 ~~~i~~~~~~~~-l~~--aDlVIEav~E~~~vK--~~vf~~l~~~~~~~~IlasnTStl--~i~~iA~~~~~p~r~~G~H 142 (503)
T TIGR02279 70 LKRLIPVTDLHA-LAD--AGLVIEAIVENLEVK--KALFAQLEELCPADTIIASNTSSL--SITAIAAGLARPERVAGLH 142 (503)
T ss_pred HhccEEeCCHHH-hCC--CCEEEEcCcCcHHHH--HHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCcccceEEEe
Confidence 467899999964 654 559999999999999 999999999999999999999998 66764 6889999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK- 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~- 207 (269)
||||++.++|||||+|++|++++++++..+++.+||.|++++|.||||+||++.++++||++++++|+ ++++||++++
T Consensus 143 Ff~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~ 222 (503)
T TIGR02279 143 FFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRD 222 (503)
T ss_pred ccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999998
Q ss_pred hcCCCchhhHHHHhhchHHHHHHHHHHHHHh-CC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTF-GD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~-g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
++|+|||||+++|++|+|+.+++++.+++.+ ++ +|. +++++++|+++|++|+|||+|||+
T Consensus 223 ~~G~~mGPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~--p~~~~~~~v~~G~lG~KtG~GfY~ 284 (503)
T TIGR02279 223 GAGFPMGPFELTDLIGHDVNFAVTCSVFNAFWQDRRFL--PSLVQQELVIAGRLGRKSGLGVYD 284 (503)
T ss_pred cCCCCcCHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHCCCCccccCCEeee
Confidence 9999999999999999999999999988775 44 676 578899999999999999999995
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2e-51 Score=375.16 Aligned_cols=209 Identities=30% Similarity=0.518 Sum_probs=197.3
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY 130 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf 130 (269)
.++++++++++ +.++| +|+|||||++++| +++|++|++++++++||+||||++ +++.+ +.+.+|+|++++||
T Consensus 69 ~~l~~~~~~~~-~~~aD--lVi~av~e~~~~k--~~~~~~l~~~~~~~~il~s~ts~~--~~~~la~~~~~~~r~ig~h~ 141 (282)
T PRK05808 69 ARITGTTDLDD-LKDAD--LVIEAATENMDLK--KKIFAQLDEIAKPEAILATNTSSL--SITELAAATKRPDKVIGMHF 141 (282)
T ss_pred hCeEEeCCHHH-hccCC--eeeecccccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhhCCCcceEEeec
Confidence 47888988864 66555 9999999999999 999999999999999999999998 67775 67889999999999
Q ss_pred cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059 131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q 208 (269)
Q Consensus 131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g 208 (269)
+||++.++++||++++.|++++++.+.++++.+||.|+.++|.||||+||++.+++|||++++++|+ |++|||++++ |
T Consensus 142 ~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 142 FNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred cCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999998 9
Q ss_pred cCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
+|||+|||+++|.+|++.+.++++.+++.+++ +|. +++++++|+++|++|+|||+|||+
T Consensus 222 ~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~g~~G~k~g~Gfy~ 281 (282)
T PRK05808 222 CNHPIGPLALADLIGLDTCLAIMEVLYEGFGDSKYR--PCPLLRKMVAAGWLGRKTGRGFYD 281 (282)
T ss_pred CCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCcCC--CCHHHHHHHHCCCCccccCCcccC
Confidence 99999999999999999999999999999986 666 578999999999999999999996
No 16
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-49 Score=390.47 Aligned_cols=210 Identities=24% Similarity=0.458 Sum_probs=195.6
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++++++.++++ +.+ ||+|+|||+|++++| +.+|++++++|++++||+||||++ +++.+ ..+.+|+|++|+|
T Consensus 72 ~~~i~~~~~~~~-~~~--aDlViEav~E~~~vK--~~vf~~l~~~~~~~ailasntStl--~i~~la~~~~~p~r~~G~h 144 (507)
T PRK08268 72 LARLRPVEALAD-LAD--CDLVVEAIVERLDVK--QALFAQLEAIVSPDCILATNTSSL--SITAIAAALKHPERVAGLH 144 (507)
T ss_pred HhCeEEeCCHHH-hCC--CCEEEEcCcccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEEe
Confidence 467999999965 545 559999999999999 999999999999999999999999 56665 6889999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK- 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~- 207 (269)
||||++.++|+||++|+.||+++++++..+++++||.|++++|.||||+||++.++++||++++++|+ ++++||++++
T Consensus 145 ff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~ 224 (507)
T PRK08268 145 FFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILRE 224 (507)
T ss_pred ecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999998
Q ss_pred hcCCCchhhHHHHhhchHHHHHHHHHHHHHh--CCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTF--GDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~--g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
++|+|||||+++|.+|+|+.+++++.+...+ +++|. +++++++|+++|++|+|||+|||+
T Consensus 225 ~~G~~mGPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~--~~~~~~~lv~~g~lG~ksG~GfY~ 286 (507)
T PRK08268 225 AAGFRMGPFELMDLIGLDVNHAVMESVYRQFYQEPRFR--PSLIQQELVAAGRLGRKSGQGFYR 286 (507)
T ss_pred cCCCCcCHHHHHHHhchHHHHHHHHHHHHHhcCCCcCC--ccHHHHHHHHCCCCccccCCeeeE
Confidence 8999999999999999999999999888765 35776 568999999999999999999995
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.7e-49 Score=362.79 Aligned_cols=209 Identities=25% Similarity=0.401 Sum_probs=196.2
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY 130 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf 130 (269)
.+++++++++ +++++ |+|+|||||++++| +.+|++|++++++++||+||||++ +++.+ +.+.+|+|++++||
T Consensus 70 ~~i~~~~~~~-~~~~a--D~Vieavpe~~~~k--~~~~~~l~~~~~~~~ii~s~ts~~--~~s~la~~~~~~~r~~g~h~ 142 (292)
T PRK07530 70 ARISTATDLE-DLADC--DLVIEAATEDETVK--RKIFAQLCPVLKPEAILATNTSSI--SITRLASATDRPERFIGIHF 142 (292)
T ss_pred hCeEeeCCHH-HhcCC--CEEEEcCcCCHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCcccEEEeec
Confidence 5689999985 56555 59999999999999 999999999999999999999998 56664 57889999999999
Q ss_pred cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059 131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q 208 (269)
Q Consensus 131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g 208 (269)
|||++.++++||++++.|++++++++..+++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||++++ |
T Consensus 143 ~~p~~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 143 MNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred cCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999998 9
Q ss_pred cCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
+|||+|||+++|.+|++.+.++++.+++.+++ +|. |++++++|+++|++|+|+|+|||+
T Consensus 223 ~g~~~GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~--p~~~l~~~v~~g~~G~k~g~Gfy~ 282 (292)
T PRK07530 223 ANHPMGPLELADFIGLDTCLSIMQVLHDGLADSKYR--PCPLLVKYVEAGWLGRKTGRGFYD 282 (292)
T ss_pred CCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCcCC--CCHHHHHHHHCCCCccccCCEeee
Confidence 99999999999999999999999999998886 676 568999999999999999999995
No 18
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=6e-49 Score=360.93 Aligned_cols=210 Identities=28% Similarity=0.429 Sum_probs=196.9
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.+++++.+++ ++++++| +|+|||+|++++| +.+|+++++++++++||+||||++ +++.+ +.+.+|.|++++|
T Consensus 69 ~~~~~~~~~~-~~~~~aD--~Vieav~e~~~~k--~~v~~~l~~~~~~~~il~s~tS~i--~~~~l~~~~~~~~r~~g~h 141 (295)
T PLN02545 69 LGRIRCTTNL-EELRDAD--FIIEAIVESEDLK--KKLFSELDRICKPSAILASNTSSI--SITRLASATQRPQQVIGMH 141 (295)
T ss_pred HhceEeeCCH-HHhCCCC--EEEEcCccCHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCcceEEEe
Confidence 3678888887 4676655 9999999999999 999999999999999999999998 66664 5778999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK- 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~- 207 (269)
|+|||+.++++|+++++.|++++++++..+++.+|+.|++++|.||||+||++.+++|||++++++|+ +++|||++++
T Consensus 142 ~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~ 221 (295)
T PLN02545 142 FMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKL 221 (295)
T ss_pred ccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999998
Q ss_pred hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+|||+|||+++|.+|++.+.++++.+++.+|+ +|. +++++++|+++|++|+|||+|||+
T Consensus 222 g~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~g~~G~k~g~Gfy~ 282 (295)
T PLN02545 222 GTNHPMGPLHLADFIGLDTCLSIMKVLHEGLGDSKYR--PCPLLVQYVDAGRLGRKSGRGVYH 282 (295)
T ss_pred ccCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCC--CCHHHHHHHHCCCCcccCCCeeeE
Confidence 999999999999999999999999999999986 677 578999999999999999999995
No 19
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-42 Score=320.20 Aligned_cols=210 Identities=26% Similarity=0.464 Sum_probs=197.7
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY 130 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf 130 (269)
+++++++++++++.++| +|++||||+++.| ++++++++.++++++||+||||++ +++.+ +.+.+++|++++||
T Consensus 65 ~~i~~~~~~~~~~~~aD--lVi~av~~~~~~~--~~v~~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 65 GRIRMEAGLAAAVSGAD--LVIEAVPEKLELK--RDVFARLDGLCDPDTIFATNTSGL--PITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred hceEEeCCHHHHhccCC--EEEEeccCcHHHH--HHHHHHHHHhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEEcc
Confidence 56889999999997766 9999999999999 999999999999999999999998 66665 56778999999999
Q ss_pred cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059 131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK- 207 (269)
Q Consensus 131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~- 207 (269)
++|++..+++|+++++.|++++++.+.++++.+|+.|+++ +|.|||++||++.++++||+.++++|+ ++++||.+++
T Consensus 139 ~~p~~~~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~ 218 (311)
T PRK06130 139 FTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKW 218 (311)
T ss_pred CCCCccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 699999999999999999999999998 9999999998
Q ss_pred hcCCC---chhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 208 QFGFP---VGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 208 g~G~p---~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+|+| +|||+++|.+|++.+.++++.+++.++++|. +++++++|+++|++|+|+|+|||+
T Consensus 219 ~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~g~~G~~~g~gfy~ 281 (311)
T PRK06130 219 SLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTT--PSPLLEEKVEAGELGAKSGQGFYA 281 (311)
T ss_pred cCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCC--CCHHHHHHHHcCCccccCCCcCcc
Confidence 99999 6999999999999999999999999988887 578999999999999999999995
No 20
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=6.8e-37 Score=300.33 Aligned_cols=191 Identities=18% Similarity=0.321 Sum_probs=170.5
Q ss_pred cccccCCCCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CC
Q psy9059 40 LCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IP 118 (269)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~ 118 (269)
.+...++.. .+++++++|++|+++++| +||||+||++++| +++|++|++++++++||+||||++ +++.+ +.
T Consensus 56 ~l~~~~~~~--~g~i~~~~~~~ea~~~aD--~Vieavpe~~~vk--~~l~~~l~~~~~~~~iI~SsTsgi--~~s~l~~~ 127 (495)
T PRK07531 56 MLTDAPLPP--EGRLTFCASLAEAVAGAD--WIQESVPERLDLK--RRVLAEIDAAARPDALIGSSTSGF--LPSDLQEG 127 (495)
T ss_pred hhccchhhh--hhceEeeCCHHHHhcCCC--EEEEcCcCCHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhh
Confidence 344444444 678999999999998776 9999999999999 999999999999999999999998 56664 67
Q ss_pred CCCCCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC
Q psy9059 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT 197 (269)
Q Consensus 119 ~~~p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi 197 (269)
+.+|+|+++.|||||++.+|++|+++|+.|++++++++..|++.+|+.|+++ |+.|||++||++.++++||++|+++|+
T Consensus 128 ~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~ 207 (495)
T PRK07531 128 MTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGI 207 (495)
T ss_pred cCCcceEEEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999999999999999999999999999 899999999999999999999999998
Q ss_pred -CHHHHHHHHH-hcCCC---chhhHHHHhhchH-HHHHHHHHHHHHh
Q psy9059 198 -SPKDLDRLTK-QFGFP---VGAATLSDEVGID-VGAHIAKDLSKTF 238 (269)
Q Consensus 198 -s~edID~a~~-g~G~p---~GPf~~~D~~Gld-~~~~~~~~l~~~~ 238 (269)
|+++||.+++ |+|++ +|||+++|+.|++ .+.+.++++...+
T Consensus 208 ~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 208 ATTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPCL 254 (495)
T ss_pred CCHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchhh
Confidence 9999999998 88886 7999999999866 4555555554433
No 21
>KOG2305|consensus
Probab=100.00 E-value=3.1e-38 Score=278.39 Aligned_cols=166 Identities=18% Similarity=0.227 Sum_probs=156.6
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccC
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFS 132 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~Hffn 132 (269)
.|+-++++.|++.||- +|||||||+|++| +++|++||++++|.+|++||||+| .|+...+++.+.+||++.||.|
T Consensus 71 ~is~t~~l~E~vk~Ai--~iQEcvpE~L~lk--k~ly~qlD~i~d~~tIlaSSTSt~-mpS~~s~gL~~k~q~lvaHPvN 145 (313)
T KOG2305|consen 71 LISGTTSLNELVKGAI--HIQECVPEDLNLK--KQLYKQLDEIADPTTILASSTSTF-MPSKFSAGLINKEQCLVAHPVN 145 (313)
T ss_pred HHhCCccHHHHHhhhh--hHHhhchHhhHHH--HHHHHHHHHhcCCceEEecccccc-ChHHHhhhhhhhhheeEecCCC
Confidence 4566799999999987 9999999999999 999999999999999999999999 3444458999999999999999
Q ss_pred CCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hc
Q psy9059 133 PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QF 209 (269)
Q Consensus 133 P~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~ 209 (269)
|||.+||||+||.|.|+|++++++.++++++|..||.. +++-||..||++.|++||..++++.|+ +..|+|.+|. |+
T Consensus 146 PPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GL 225 (313)
T KOG2305|consen 146 PPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGL 225 (313)
T ss_pred CCcccchheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCC
Confidence 99999999999999999999999999999999999999 899999999999999999999999999 9999999998 99
Q ss_pred CCCc---hhhHHHHhhc
Q psy9059 210 GFPV---GAATLSDEVG 223 (269)
Q Consensus 210 G~p~---GPf~~~D~~G 223 (269)
|.|. ||+|++++..
T Consensus 226 G~RYAflG~lET~HLNA 242 (313)
T KOG2305|consen 226 GPRYAFLGPLETAHLNA 242 (313)
T ss_pred CcchhcccchhhhhcCc
Confidence 9984 9999999864
No 22
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.3e-35 Score=271.97 Aligned_cols=197 Identities=16% Similarity=0.217 Sum_probs=180.4
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++++++.+++++++++| +|+||+||++++| +.+|+++++++++++||+||||++ +++.+ +.+.+|.|+++.|
T Consensus 67 ~~~i~~~~~~~~a~~~ad--~Vi~avpe~~~~k--~~~~~~l~~~~~~~~ii~ssts~~--~~~~la~~~~~~~~~~~~h 140 (308)
T PRK06129 67 LARIRVTDSLADAVADAD--YVQESAPENLELK--RALFAELDALAPPHAILASSTSAL--LASAFTEHLAGRERCLVAH 140 (308)
T ss_pred hcCeEEECcHHHhhCCCC--EEEECCcCCHHHH--HHHHHHHHHhCCCcceEEEeCCCC--CHHHHHHhcCCcccEEEEe
Confidence 356899999999998766 9999999999999 999999999999999999999987 66654 5778999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK 207 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~ 207 (269)
||||++.++++|+++++.|++++++++..|++.+||.|+++ ++.|||++||++.++++||+.++++|+ |+++||.+++
T Consensus 141 p~~p~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~ 220 (308)
T PRK06129 141 PINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIR 220 (308)
T ss_pred cCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 799999999999999999999999998 9999999998
Q ss_pred -hcCCC---chhhHHHHhh---chHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHH
Q psy9059 208 -QFGFP---VGAATLSDEV---GIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVE 255 (269)
Q Consensus 208 -g~G~p---~GPf~~~D~~---Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~ 255 (269)
|+|++ +|||+++|.. |.+........++.+.++ .+. ++++++++++
T Consensus 221 ~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~--~~~~~~~~~~ 274 (308)
T PRK06129 221 DGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQ--PVPWDGELVA 274 (308)
T ss_pred hccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCC--CchhhHHHHH
Confidence 99998 7999999987 888888888888888776 555 5677887776
No 23
>KOG1683|consensus
Probab=100.00 E-value=3.4e-37 Score=286.95 Aligned_cols=192 Identities=31% Similarity=0.502 Sum_probs=177.0
Q ss_pred CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccCCCCCCcEEEEeCC
Q psy9059 67 SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFSPVDKMQLLEIITT 145 (269)
Q Consensus 67 ~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~HffnP~~~~~lVEiv~~ 145 (269)
+++|+|+|+|.|++++| |++|++|+++|+++||+|||||++ |+.++ +++.+|++++++|||+|++.|+|+||+.+
T Consensus 68 ~~~dmvieav~edl~Lk--~~l~~~le~v~~~~~i~gsntSs~--~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~ 143 (380)
T KOG1683|consen 68 ANADMVIEAVFEDLELK--HELFKSLEKVEPPKCIRGSNTSSL--DINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA 143 (380)
T ss_pred cccceeccchhhhHHHH--HHHHHHHHhhcCCcceeeeccccC--ChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence 45669999999999999 999999999999999999999998 88886 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCchhhHHHHhhch
Q psy9059 146 EQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQE-GTSPKDLDRLTKQFGFPVGAATLSDEVGI 224 (269)
Q Consensus 146 ~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~e-Gis~edID~a~~g~G~p~GPf~~~D~~Gl 224 (269)
..||..++..+.+...++||.|++|.+.+||.+||++.++.+++.+++.+ |++|.+||....-||+|+||+.+.|..|+
T Consensus 144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gf 223 (380)
T KOG1683|consen 144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGF 223 (380)
T ss_pred cCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCc
Confidence 99999999999999999999999999999999999999999999999988 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059 225 DVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 225 d~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~ 269 (269)
|+..+ +...+++.+. +.+.++++++|+.|+|||+|||.
T Consensus 224 dv~ea----l~~gl~~~~~---~r~~eel~~~~~~g~kT~kg~y~ 261 (380)
T KOG1683|consen 224 DVAEA----LAVGLGDEIG---PRIEEELLEKGRAGIKTGKGIYP 261 (380)
T ss_pred cHHHH----Hhhccchhcc---chhHHHHHHHHhhhhhccCcccc
Confidence 98644 4444555443 12678999999999999999994
No 24
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.3e-34 Score=282.12 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=148.9
Q ss_pred hcCCCCcEEecCCCCCcccccc-cCCCCCCCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy9059 94 MYTYSERLMGSNGLAMVFPLQE-QIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD 172 (269)
Q Consensus 94 ~~~~~~~iiaSnTS~l~~p~~~-~~~~~~p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd 172 (269)
..+++++++++++++. ..+. .....+|+|++++|||||++.+|+|||+++++||+++++++.+|++++||.|++++|
T Consensus 336 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d 413 (507)
T PRK08268 336 GPSADGLVLLAPTGGD--TTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRD 413 (507)
T ss_pred ccccccceEeeccCcc--hHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCC
Confidence 4678999999998875 3334 346779999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHH
Q psy9059 173 GPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNV 249 (269)
Q Consensus 173 ~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~l 249 (269)
.||||+||++.+++|||++|+++|+ |++|||.+|+ |+|||+|||+++|.+|++.+.++++++++.+|+ +|+ |+++
T Consensus 414 ~~Gfi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~--p~~l 491 (507)
T PRK08268 414 SPGFVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYR--PSPW 491 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCC--cCHH
Confidence 9999999999999999999999999 9999999998 999999999999999999999999999999995 887 5799
Q ss_pred HHHHHHcCC
Q psy9059 250 LNEMVEKGY 258 (269)
Q Consensus 250 L~~lv~~G~ 258 (269)
|++|+++|.
T Consensus 492 l~~~v~~G~ 500 (507)
T PRK08268 492 LRRRAALGL 500 (507)
T ss_pred HHHHHHcCC
Confidence 999998754
No 25
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=3.8e-33 Score=240.68 Aligned_cols=116 Identities=22% Similarity=0.399 Sum_probs=98.3
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H 129 (269)
.++|++++++++++ ++| +|+||+||++++| +++|++|+++|++||||+||||++ +++++ +.+.+|+|++|+|
T Consensus 64 ~~~i~~~~dl~~~~-~ad--lViEai~E~l~~K--~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~p~R~ig~H 136 (180)
T PF02737_consen 64 LARISFTTDLEEAV-DAD--LVIEAIPEDLELK--QELFAELDEICPPDTILASNTSSL--SISELAAALSRPERFIGMH 136 (180)
T ss_dssp HHTEEEESSGGGGC-TES--EEEE-S-SSHHHH--HHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSSTGGGEEEEE
T ss_pred hhhcccccCHHHHh-hhh--eehhhccccHHHH--HHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCcCceEEEEe
Confidence 67899999999998 655 9999999999999 999999999999999999999999 78885 7899999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc
Q psy9059 130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG 173 (269)
Q Consensus 130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~ 173 (269)
|||||+++|+||||++++|++++++++.+|++++||.|++++|.
T Consensus 137 f~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 137 FFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp E-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES-
T ss_pred cccccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999874
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.95 E-value=3.7e-28 Score=188.72 Aligned_cols=93 Identities=45% Similarity=0.804 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCCC-CCCChhHHHH
Q psy9059 175 GFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR-FSGGNLNVLN 251 (269)
Q Consensus 175 GfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~-~~~~~~~lL~ 251 (269)
|||+||++.+++|||++++++|+ |++|||++++ |+|+|+|||+++|.+|++++.++++++.+.++++ +. ++++++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~--~~~~l~ 78 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFR--PSPLLK 78 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGS--S-HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCC--chHHHH
Confidence 89999999999999999999998 9999999998 9999999999999999999999999999999986 54 689999
Q ss_pred HHHHcCCCCCCCCCccCC
Q psy9059 252 EMVEKGYLDFKNKDGYYP 269 (269)
Q Consensus 252 ~lv~~G~lG~ksG~GFY~ 269 (269)
+|+++|++|+|+|+|||+
T Consensus 79 ~mv~~g~~G~k~g~Gfy~ 96 (97)
T PF00725_consen 79 EMVEEGRLGRKSGKGFYD 96 (97)
T ss_dssp HHHHTT--BGGGTBSSSB
T ss_pred HHHHCCCCcCcCCCccee
Confidence 999999999999999996
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.93 E-value=1.6e-25 Score=220.42 Aligned_cols=131 Identities=18% Similarity=0.322 Sum_probs=119.1
Q ss_pred EEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHH
Q psy9059 126 IGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDR 204 (269)
Q Consensus 126 i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~ 204 (269)
++..........+.+||++++.||+++++.+.+|++++||.|++++|+||||+||++.+++|||++++++|+ +++|||.
T Consensus 366 ~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~ 445 (503)
T TIGR02279 366 VLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDT 445 (503)
T ss_pred hHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 333333344445789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCC
Q psy9059 205 LTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGY 258 (269)
Q Consensus 205 a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~ 258 (269)
+|+ |+|||+|||+++|.+|+|.+.++++++++.+++ +|+ |+++|++|++.|.
T Consensus 446 a~~~g~G~P~GP~~~~D~~Gld~~~~~l~~l~~~~~~~~~~--p~~~L~~~v~~g~ 499 (503)
T TIGR02279 446 AMRLGVNYPYGPLAWAAQLGWQRILRVLENLQHHYGEERYR--PSSLLRRRALLGS 499 (503)
T ss_pred HHHhCCCCCcCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCC--cCHHHHHHHHcCC
Confidence 998 999999999999999999999999999999984 787 5789999998765
No 28
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.70 E-value=3.8e-17 Score=167.58 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=91.1
Q ss_pred HHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHH
Q psy9059 154 ASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVG 227 (269)
Q Consensus 154 ~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~ 227 (269)
+.+.+++.+++|.|+.+++.||||+||++.+++|||++|++||| +++|||.+|+ |+|||+ |||+++|.+|++.+
T Consensus 625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v 704 (737)
T TIGR02441 625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL 704 (737)
T ss_pred HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence 34455666778888766889999999999999999999999998 9999999998 999996 99999999999999
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHc
Q psy9059 228 AHIAKDLSKTFGDRFSGGNLNVLNEMVEK 256 (269)
Q Consensus 228 ~~~~~~l~~~~g~~~~~~~~~lL~~lv~~ 256 (269)
++.++.+++.+|++|. |+++|.+|+++
T Consensus 705 ~~~~~~l~~~~g~~~~--p~~lL~~~~~~ 731 (737)
T TIGR02441 705 VDKMEKYAAAYGVQFT--PCQLLLDHAKS 731 (737)
T ss_pred HHHHHHHHHHhCCCcC--CCHHHHHHHHh
Confidence 9999999999999997 67899999864
No 29
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.56 E-value=8.8e-15 Score=149.73 Aligned_cols=88 Identities=33% Similarity=0.484 Sum_probs=81.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCC
Q psy9059 172 DGPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGG 245 (269)
Q Consensus 172 d~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~ 245 (269)
-.||||+||++.+++|||++|+++|| +++|||.+|+ |+|||+ |||+++|.+|++.+.+.++.++..+|++|.
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~-- 690 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFT-- 690 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccC--
Confidence 36899999999999999999999997 9999999998 999997 999999999999999999999999999887
Q ss_pred hhHHHHHHHHcCCCCCCCCCccC
Q psy9059 246 NLNVLNEMVEKGYLDFKNKDGYY 268 (269)
Q Consensus 246 ~~~lL~~lv~~G~lG~ksG~GFY 268 (269)
|+++|.+|+++ |++||
T Consensus 691 p~~~l~~~~~~-------~~~f~ 706 (708)
T PRK11154 691 PCERLVEMAER-------GESFY 706 (708)
T ss_pred CCHHHHHHHHc-------CCCCC
Confidence 67899999875 45577
No 30
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.56 E-value=1.1e-14 Score=148.98 Aligned_cols=84 Identities=33% Similarity=0.465 Sum_probs=78.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCCh
Q psy9059 173 GPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGN 246 (269)
Q Consensus 173 ~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~ 246 (269)
.+|||+||++.+++|||++++++|| +++|||.+|+ |+|||+ |||+++|.+|+|.++++++.++..+|++|. |
T Consensus 607 ~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~--p 684 (699)
T TIGR02440 607 EASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFT--P 684 (699)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcC--C
Confidence 5799999999999999999999997 9999999998 999996 999999999999999999999999999887 6
Q ss_pred hHHHHHHHHcCC
Q psy9059 247 LNVLNEMVEKGY 258 (269)
Q Consensus 247 ~~lL~~lv~~G~ 258 (269)
+++|.+|+++|+
T Consensus 685 ~~~L~~~~~~~~ 696 (699)
T TIGR02440 685 CQRLVAMAAEKQ 696 (699)
T ss_pred CHHHHHHHHcCC
Confidence 789999997643
No 31
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.42 E-value=5.3e-13 Score=136.84 Aligned_cols=84 Identities=29% Similarity=0.478 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhH
Q psy9059 175 GFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLN 248 (269)
Q Consensus 175 GfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~ 248 (269)
..|+||++.+++|||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.++++++.+. .++++|. |++
T Consensus 625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~--p~~ 701 (715)
T PRK11730 625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQ--VPE 701 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCC--CCH
Confidence 35899999999999999999994 9999999999 999986 9999999999999999999865 5788887 678
Q ss_pred HHHHHHHcCCCCCCCCCccC
Q psy9059 249 VLNEMVEKGYLDFKNKDGYY 268 (269)
Q Consensus 249 lL~~lv~~G~lG~ksG~GFY 268 (269)
+|++|+++ |++||
T Consensus 702 ~L~~~v~~-------~~~f~ 714 (715)
T PRK11730 702 GLREMAAN-------GESYY 714 (715)
T ss_pred HHHHHHHc-------CCCCC
Confidence 99999875 55687
No 32
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.40 E-value=1e-12 Score=134.78 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhH
Q psy9059 175 GFYTTRILSTMLSEAMRILQEG-T-SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLN 248 (269)
Q Consensus 175 GfI~nRll~al~~EA~~lv~eG-i-s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~ 248 (269)
..|+||++.+++|||++|++|| + +++|||.+|. |+|||+ |||+++|.+|++.+.+.++.+. .+|++|. |++
T Consensus 625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~--p~~ 701 (714)
T TIGR02437 625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQ--VTA 701 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCC--CCH
Confidence 4699999999999999999999 5 9999999998 999997 9999999999999999999654 7898887 678
Q ss_pred HHHHHHHcC
Q psy9059 249 VLNEMVEKG 257 (269)
Q Consensus 249 lL~~lv~~G 257 (269)
+|++|+++|
T Consensus 702 ~l~~~~~~g 710 (714)
T TIGR02437 702 KLREMAKNG 710 (714)
T ss_pred HHHHHHHcC
Confidence 999998754
No 33
>KOG1683|consensus
Probab=98.81 E-value=2.1e-09 Score=101.29 Aligned_cols=76 Identities=29% Similarity=0.402 Sum_probs=68.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChh
Q psy9059 174 PGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNL 247 (269)
Q Consensus 174 pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~ 247 (269)
+..+++|++.+++|||+++++||+ +++++|.+.. |+|||. |||.+.|..|.+.++..|+.+.. |. |+
T Consensus 293 ~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~--P~ 365 (380)
T KOG1683|consen 293 DEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FE--PC 365 (380)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CC--HH
Confidence 346899999999999999999998 9999999986 999996 99999999999999999998865 65 78
Q ss_pred HHHHHHHHc
Q psy9059 248 NVLNEMVEK 256 (269)
Q Consensus 248 ~lL~~lv~~ 256 (269)
++|.++.++
T Consensus 366 ~~l~~~a~~ 374 (380)
T KOG1683|consen 366 QLLKDHAKS 374 (380)
T ss_pred HHHHHHHhh
Confidence 999988754
No 34
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.68 E-value=3.1e-08 Score=90.89 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=102.0
Q ss_pred EEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCccccc--cc-CCCCCCCeEEEee
Q psy9059 55 TYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQ--EQ-IPIQTPHLIIGMH 129 (269)
Q Consensus 55 ~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~--~~-~~~~~p~R~i~~H 129 (269)
...+|..++++++| +|+.|+|++..+| .-++. .+.+.++++++|.. +|+.+ |.+ ++ +.++.+ ++|
T Consensus 44 ~~~~~~~~~~~~aD--ivi~~vp~~~~~~--~v~~~~~~~~~~~~~g~iivd-~st~~-~~~~~~l~~~l~~~----g~~ 113 (291)
T TIGR01505 44 VTAETARQVTEQAD--VIFTMVPDSPQVE--EVAFGENGIIEGAKPGKTLVD-MSSIS-PIESKRFAKAVKEK----GID 113 (291)
T ss_pred cccCCHHHHHhcCC--EEEEecCCHHHHH--HHHcCcchHhhcCCCCCEEEE-CCCCC-HHHHHHHHHHHHHc----CCC
Confidence 34568889997766 9999999988887 66654 36677788888874 44442 432 22 223222 445
Q ss_pred ccCCC-------CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCc---hhHHHHHHHH----HHHHHHHHH
Q psy9059 130 YFSPV-------DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPG---FYTTRILSTM----LSEAMRILQ 194 (269)
Q Consensus 130 ffnP~-------~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pG---fI~nRll~al----~~EA~~lv~ 194 (269)
|..+| .....++++.+ .++++++++..+++.+|+.++.+ ...+| .++|+++.+. ++|++.+.+
T Consensus 114 ~~~~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~ 191 (291)
T TIGR01505 114 YLDAPVSGGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFAS 191 (291)
T ss_pred EEecCCCCCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432 12233566666 46899999999999999999999 44556 4899999877 899998886
Q ss_pred -cCCCHHHHHHHHH-hcC
Q psy9059 195 -EGTSPKDLDRLTK-QFG 210 (269)
Q Consensus 195 -eGis~edID~a~~-g~G 210 (269)
.|+++++++.++. +.|
T Consensus 192 ~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 192 KAGVDPVRVRQALRGGLA 209 (291)
T ss_pred HcCCCHHHHHHHHhcCcc
Confidence 5679999999997 654
No 35
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.62 E-value=8.6e-10 Score=106.97 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=87.2
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecC----------CCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQ----------EQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ 120 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vp----------E~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~ 120 (269)
.+++.++|+.+|++||| +|+++++ |++++| +.+|+++++.+++++++.||+|.. .+.++ ..+.
T Consensus 60 ~~I~~ttD~~eal~~AD--~Vi~ai~~~~~~~~~~de~i~~K--~g~~~~~~~t~g~ggi~~~~~s~~--~i~~ia~~i~ 133 (423)
T cd05297 60 LKIEATTDRREALDGAD--FVINTIQVGGHEYTETDFEIPEK--YGYYQTVGDTSGPGGIFRALRTIP--VLLDIARDIE 133 (423)
T ss_pred eEEEEeCCHHHHhcCCC--EEEEeeEecCccchhhhhhhHHH--cCeeeeccCCCcHHHHHHHHhhHH--HHHHHHHHHH
Confidence 67889999999998877 9999998 568888 999999999999999999999986 45554 3443
Q ss_pred --CCCeEEEeeccCCCCCC-----cEEEEeCCCCCCHHHHHHHHHHHHhCCcEE
Q psy9059 121 --TPHLIIGMHYFSPVDKM-----QLLEIITTEQTSQDTAASAVAVGLKQGKVV 167 (269)
Q Consensus 121 --~p~R~i~~HffnP~~~~-----~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~p 167 (269)
.| +.+++||+||+..+ +..+ ++.-.|...+......+++.+|+.|
T Consensus 134 ~~~p-~a~~i~~tNPv~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 134 ELCP-DAWLLNYANPMAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHCC-CCEEEEcCChHHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 37 99999999999887 6666 4444455456677777888888754
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.55 E-value=1.7e-07 Score=86.04 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=105.0
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCccccc--cc-CCCCCCCeEEE
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQ--EQ-IPIQTPHLIIG 127 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~--~~-~~~~~p~R~i~ 127 (269)
+.+++++++|++.++| +|+.++|+...+| .-++. .+.+.++++++|. ++|+.+ |.+ .+ +.+..+ +
T Consensus 45 g~~~~~~~~e~~~~~d--~vi~~vp~~~~~~--~v~~~~~~~~~~~~~g~iii-d~st~~-~~~~~~l~~~~~~~----g 114 (296)
T PRK11559 45 GAETASTAKAVAEQCD--VIITMLPNSPHVK--EVALGENGIIEGAKPGTVVI-DMSSIA-PLASREIAAALKAK----G 114 (296)
T ss_pred CCeecCCHHHHHhcCC--EEEEeCCCHHHHH--HHHcCcchHhhcCCCCcEEE-ECCCCC-HHHHHHHHHHHHHc----C
Confidence 3467789999997766 9999999987777 66653 4677788888887 444442 422 12 222221 5
Q ss_pred eeccCCCCC-------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchh---HHHHHHH----HHHHHHHH
Q psy9059 128 MHYFSPVDK-------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFY---TTRILST----MLSEAMRI 192 (269)
Q Consensus 128 ~HffnP~~~-------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI---~nRll~a----l~~EA~~l 192 (269)
+||.++|-. ...++++.| +++++++++..+++.+|+.++.+ ...+|++ +|+++.+ +++|++.+
T Consensus 115 ~~~~d~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 192 (296)
T PRK11559 115 IEMLDAPVSGGEPKAIDGTLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVL 192 (296)
T ss_pred CcEEEcCCCCCHHHHhhCcEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677665422 134567766 36899999999999999999988 4567775 7887666 57999998
Q ss_pred HH-cCCCHHHHHHHHH-hcCC
Q psy9059 193 LQ-EGTSPKDLDRLTK-QFGF 211 (269)
Q Consensus 193 v~-eGis~edID~a~~-g~G~ 211 (269)
.+ .|+++++++.+++ +++.
T Consensus 193 ~~~~Gi~~~~~~~~l~~~~~~ 213 (296)
T PRK11559 193 ATKAGVNPDLVYQAIRGGLAG 213 (296)
T ss_pred HHHcCCCHHHHHHHHhcCccc
Confidence 87 5679999999987 6553
No 37
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.52 E-value=4.3e-07 Score=86.84 Aligned_cols=105 Identities=10% Similarity=0.095 Sum_probs=83.2
Q ss_pred cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCCCC
Q psy9059 58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKM 137 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~~~ 137 (269)
.+.++++.++| +|++|+|++. . .++++++.. +++++|+..+||.=+.++..+... .+.+|++.||.+++...
T Consensus 134 ~~~~~~~~~aD--lVilavP~~~--~--~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~-~~~~fvg~HPm~G~~~~ 205 (374)
T PRK11199 134 DRAEDILADAG--MVIVSVPIHL--T--EEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAA-HSGPVLGLHPMFGPDVG 205 (374)
T ss_pred hhHHHHHhcCC--EEEEeCcHHH--H--HHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHh-CCCCEEeeCCCCCCCCc
Confidence 36778887665 9999999964 5 889999999 899999999988521134443222 23479999999988776
Q ss_pred cEEE--EeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 138 QLLE--IITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 138 ~lVE--iv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
.+.+ ++..+.|+++.++.+.++++.+|..++.+
T Consensus 206 ~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~ 240 (374)
T PRK11199 206 SLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRI 240 (374)
T ss_pred ccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEEC
Confidence 6665 67778889999999999999999999988
No 38
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.41 E-value=6.6e-06 Score=75.33 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=101.3
Q ss_pred HHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccCCCC----
Q psy9059 61 SERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFSPVD---- 135 (269)
Q Consensus 61 ~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~HffnP~~---- 135 (269)
.+++.++| +|+.|+|++.. .+++++|.++++++++|.. ++|. +.+.. ....++.+++++||.....
T Consensus 52 ~~~~~~aD--lVilavp~~~~----~~~~~~l~~~l~~~~ii~d-~~Sv--k~~~~~~~~~~~~~~v~~HPm~G~~~~g~ 122 (279)
T PRK07417 52 LSLLKDCD--LVILALPIGLL----LPPSEQLIPALPPEAIVTD-VGSV--KAPIVEAWEKLHPRFVGSHPMAGTAESGV 122 (279)
T ss_pred HhHhcCCC--EEEEcCCHHHH----HHHHHHHHHhCCCCcEEEe-Ccch--HHHHHHHHHHhhCCceeeCCcCCCCcchH
Confidence 35676655 99999998543 4578899999999999854 4444 33332 2223455899999954332
Q ss_pred --------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe-ccCchhHHHH--HHHHHHHHH-HHHHcCCCHHHHH
Q psy9059 136 --------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK-DGPGFYTTRI--LSTMLSEAM-RILQEGTSPKDLD 203 (269)
Q Consensus 136 --------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk-d~pGfI~nRl--l~al~~EA~-~lv~eGis~edID 203 (269)
.-+.+-+++++.++++.++.+..+++.+|+.++.+. +..+.++-.+ +..++..++ ..+...-+.+..+
T Consensus 123 ~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~ 202 (279)
T PRK07417 123 EAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLK 202 (279)
T ss_pred HHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhH
Confidence 234455899999999999999999999999999883 2222222221 111222221 1111111222223
Q ss_pred HHH--HhcCCCc-------hhhHHHHhhchH--HHHHHHHHHHHHh
Q psy9059 204 RLT--KQFGFPV-------GAATLSDEVGID--VGAHIAKDLSKTF 238 (269)
Q Consensus 204 ~a~--~g~G~p~-------GPf~~~D~~Gld--~~~~~~~~l~~~~ 238 (269)
.+. .|-||+. .|-.|.|..--+ .+.+.++.+.+.+
T Consensus 203 ~~~~~~~~gfrd~tRia~~~p~~w~~i~~~N~~~i~~~l~~~~~~l 248 (279)
T PRK07417 203 LAQNLASSGFADTSRVGGGNPELGVMMAEYNRAALLRSLASYRQSL 248 (279)
T ss_pred HhhhhccCcccccccccCCChHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 223 3778872 677777776544 3445555554443
No 39
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.97 E-value=7e-05 Score=71.05 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=81.2
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc--c-c-CCCCCCCeEEE
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ--E-Q-IPIQTPHLIIG 127 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~--~-~-~~~~~p~R~i~ 127 (269)
.+++.++|..+++.++| +|+.++|... .. ++++..|..+++++++|. ++|+.+ |.. + + ..+..+.+.++
T Consensus 67 ~Gi~~asd~~eaa~~AD--vVIlaVP~~~-~v--~~Vl~~L~~~L~~g~IVI-d~ST~~-~~~~s~~l~~~l~~~~~~~g 139 (342)
T PRK12557 67 AGVKVVSDDAEAAKHGE--IHILFTPFGK-KT--VEIAKNILPHLPENAVIC-NTCTVS-PVVLYYSLEGELRTKRKDVG 139 (342)
T ss_pred CCCEEeCCHHHHHhCCC--EEEEECCCcH-HH--HHHHHHHHhhCCCCCEEE-EecCCC-HHHHHHHHHHHhcccccccC
Confidence 34788889999987766 9999999643 35 789999999999998877 455542 321 2 2 23444556778
Q ss_pred eeccCCCCC----CcEEEEeCCCCC------CHHHHHHHHHHHHhCCcEEEEEe
Q psy9059 128 MHYFSPVDK----MQLLEIITTEQT------SQDTAASAVAVGLKQGKVVITVK 171 (269)
Q Consensus 128 ~HffnP~~~----~~lVEiv~~~~T------s~e~~~~~~~~~~~lGk~pv~vk 171 (269)
+|+++|... .--++++.+..| +++.++++..+++.+|+.++++.
T Consensus 140 i~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~ 193 (342)
T PRK12557 140 ISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP 193 (342)
T ss_pred eeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 888777542 122457765544 89999999999999999997775
No 40
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.85 E-value=0.00027 Score=63.72 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=97.0
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF 131 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff 131 (269)
+++.+++..|++.++| +|+.|++ .+.. .+++.++...++++.+|.|.+++. +++.+. ..... +++.++|.
T Consensus 48 g~~~~~~~~e~~~~aD--vVil~v~--~~~~--~~vl~~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~~~-~vvr~mP~ 118 (266)
T PLN02688 48 GVKTAASNTEVVKSSD--VIILAVK--PQVV--KDVLTELRPLLSKDKLLVSVAAGI--TLADLQEWAGGR-RVVRVMPN 118 (266)
T ss_pred CCEEeCChHHHHhcCC--EEEEEEC--cHHH--HHHHHHHHhhcCCCCEEEEecCCC--cHHHHHHHcCCC-CEEEECCC
Confidence 3566778889887666 9999995 4556 888899988888888888888887 555543 23322 77778887
Q ss_pred CCCCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCcEEEEEec--------cCchhHHHHHHHHHHHHH--HHHHcCCCHH
Q psy9059 132 SPVDKMQLLE-IITTEQTSQDTAASAVAVGLKQGKVVITVKD--------GPGFYTTRILSTMLSEAM--RILQEGTSPK 200 (269)
Q Consensus 132 nP~~~~~lVE-iv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd--------~pGfI~nRll~al~~EA~--~lv~eGis~e 200 (269)
.|.....-+. ++.+..++++..+.+..++..+|+ ++.+.| ..|. ...+ .+.+.+++ ...+.|++++
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~-g~a~-~~~~~~a~~ea~~~~Gl~~~ 195 (266)
T PLN02688 119 TPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGS-GPAY-IFLAIEALADGGVAAGLPRD 195 (266)
T ss_pred cHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcC-HHHH-HHHHHHHHHHHHHHcCCCHH
Confidence 7765443333 556788899999999999999999 776643 1111 1111 22222222 2566888888
Q ss_pred HHHHHHH
Q psy9059 201 DLDRLTK 207 (269)
Q Consensus 201 dID~a~~ 207 (269)
+.-.++.
T Consensus 196 ~a~~~~~ 202 (266)
T PLN02688 196 VALSLAA 202 (266)
T ss_pred HHHHHHH
Confidence 8776653
No 41
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.84 E-value=0.00039 Score=66.10 Aligned_cols=175 Identities=9% Similarity=0.015 Sum_probs=108.2
Q ss_pred EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHh-cCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc-C
Q psy9059 56 YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYM-YTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF-S 132 (269)
Q Consensus 56 ~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~-~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff-n 132 (269)
..+++.+++.++| +|+.|+|.+ .. .++++++.. ..++++|+...+|.=.-++..+. ...+..|+++.||. +
T Consensus 50 ~~~~~~~~~~~aD--lVilavP~~--~~--~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG 123 (359)
T PRK06545 50 LAADLQRAAAEAD--LIVLAVPVD--AT--AALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAG 123 (359)
T ss_pred cccCHHHHhcCCC--EEEEeCCHH--HH--HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCc
Confidence 4567888887665 999999995 46 899999997 47889999765554210222232 23567899999983 3
Q ss_pred CC---------CC--CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHH--HHHHHHHHHHHHcCCC
Q psy9059 133 PV---------DK--MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRIL--STMLSEAMRILQEGTS 198 (269)
Q Consensus 133 P~---------~~--~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll--~al~~EA~~lv~eGis 198 (269)
+. .+ ....=|++++.++++.++.+.++++.+|+.|+.+ .+....++.++. -.++.+++ ....+-+
T Consensus 124 ~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~ 202 (359)
T PRK06545 124 SHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGE 202 (359)
T ss_pred CchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccC
Confidence 21 11 1223488999999999999999999999999988 444445555443 33444444 1112222
Q ss_pred HHHHHHHHHhcCCC-------chhhHHHHhhchH--HHHHHHHHHHHHh
Q psy9059 199 PKDLDRLTKQFGFP-------VGAATLSDEVGID--VGAHIAKDLSKTF 238 (269)
Q Consensus 199 ~edID~a~~g~G~p-------~GPf~~~D~~Gld--~~~~~~~~l~~~~ 238 (269)
.++. .-+.+-||+ --|=.|.|..--. .+...++.+.+.+
T Consensus 203 ~~~~-~~la~~gfrd~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~l 250 (359)
T PRK06545 203 HPLA-LRLAAGGFRDITRIASSDPGMWRDILESNAEALLDALDEWIEDL 250 (359)
T ss_pred chHH-HhhhcccccCCccccCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2111 112255665 1666677766433 3444455554443
No 42
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.75 E-value=0.0011 Score=64.78 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=85.5
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF 131 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff 131 (269)
++.++.+..+++.++| +|+-|+|- +.- .++++++.++++++++|.+.+|.-..++..+. ......++++.||.
T Consensus 45 gv~~~~~~~e~~~~aD--vVIlavp~--~~~--~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPm 118 (437)
T PRK08655 45 GVEYANDNIDAAKDAD--IVIISVPI--NVT--EDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPM 118 (437)
T ss_pred CCeeccCHHHHhccCC--EEEEecCH--HHH--HHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3467778899997766 99999997 344 67889999999999999988874211333332 33444689999974
Q ss_pred C----CCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 132 S----PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 132 n----P~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
. |......+-+++++.++++.++.+.++++.+|..++.+
T Consensus 119 aGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~ 161 (437)
T PRK08655 119 FGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVT 161 (437)
T ss_pred CCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 2 33345667789998899999999999999999999877
No 43
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.65 E-value=0.00077 Score=62.41 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=78.7
Q ss_pred EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccc-cccc-CCCCCCCeEEEeeccCC
Q psy9059 56 YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFP-LQEQ-IPIQTPHLIIGMHYFSP 133 (269)
Q Consensus 56 ~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p-~~~~-~~~~~p~R~i~~HffnP 133 (269)
...+..+++.++| +|+.|+|. ... .+++.++..+++++++|...+|.= .. +..+ ......-|+++.||...
T Consensus 56 ~~~~~~~~~~~aD--vViiavp~--~~~--~~v~~~l~~~l~~~~iv~dvgs~k-~~~~~~~~~~~~~~~~~v~~hPm~g 128 (307)
T PRK07502 56 VTTSAAEAVKGAD--LVILCVPV--GAS--GAVAAEIAPHLKPGAIVTDVGSVK-ASVIAAMAPHLPEGVHFIPGHPLAG 128 (307)
T ss_pred ecCCHHHHhcCCC--EEEECCCH--HHH--HHHHHHHHhhCCCCCEEEeCccch-HHHHHHHHHhCCCCCeEEeCCCCCC
Confidence 4567888887655 99999997 345 788899988889998886554421 11 2222 23334458999999875
Q ss_pred CCCC------------cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 134 VDKM------------QLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 134 ~~~~------------~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
.... ..+.+++...++++.++.+.++++.+|..++.+
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~ 177 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEM 177 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 4321 235677888889999999999999999999987
No 44
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.60 E-value=0.001 Score=59.95 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=91.0
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS 132 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn 132 (269)
+....+..+.+..+| +|+.|+|-. .= +++.+++..++ +.+|.|.++++ +.+.+. ...+..|++.+||..
T Consensus 50 ~~~~~~~~~~~~~ad--vVil~v~~~--~~--~~v~~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~~~~~iv~~~P~~ 119 (267)
T PRK11880 50 VRAATDNQEAAQEAD--VVVLAVKPQ--VM--EEVLSELKGQL--DKLVVSIAAGV--TLARLERLLGADLPVVRAMPNT 119 (267)
T ss_pred CeecCChHHHHhcCC--EEEEEcCHH--HH--HHHHHHHHhhc--CCEEEEecCCC--CHHHHHHhcCCCCcEEEecCCc
Confidence 455678888886655 999999652 12 35666666655 56777888887 555543 445567999999988
Q ss_pred CCCCCcEE-EEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc--Cchh-HH----HHHHHHHHHHH-HHHHcCCCHHHHH
Q psy9059 133 PVDKMQLL-EIITTEQTSQDTAASAVAVGLKQGKVVITVKDG--PGFY-TT----RILSTMLSEAM-RILQEGTSPKDLD 203 (269)
Q Consensus 133 P~~~~~lV-Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~--pGfI-~n----Rll~al~~EA~-~lv~eGis~edID 203 (269)
|.....-+ -++++..++++..+.+.++++.+|..+.+..+. .... .. -.+..++.... +..+.|+++++.-
T Consensus 120 p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~ 199 (267)
T PRK11880 120 PALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQAR 199 (267)
T ss_pred hHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 76544434 467888899999999999999999744333221 1111 00 11122332222 3355788887766
Q ss_pred HHH
Q psy9059 204 RLT 206 (269)
Q Consensus 204 ~a~ 206 (269)
+.+
T Consensus 200 ~~~ 202 (267)
T PRK11880 200 KLA 202 (267)
T ss_pred HHH
Confidence 554
No 45
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.27 E-value=0.0073 Score=55.03 Aligned_cols=105 Identities=9% Similarity=0.087 Sum_probs=73.9
Q ss_pred ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-cCCCCCCCeEEEeeccC---
Q psy9059 57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-QIPIQTPHLIIGMHYFS--- 132 (269)
Q Consensus 57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~~~~~~p~R~i~~Hffn--- 132 (269)
..+..++. + ||+|+-|+|.. .- .+++.++.+ ++++++|.+.+|+-. ++.. +... .+.++++.||..
T Consensus 50 ~~~~~~~~-~--aD~Vilavp~~--~~--~~~~~~l~~-l~~~~iv~d~gs~k~-~i~~~~~~~-~~~~~v~~hPmaG~e 119 (275)
T PRK08507 50 IVSFEELK-K--CDVIFLAIPVD--AI--IEILPKLLD-IKENTTIIDLGSTKA-KIIESVPKH-IRKNFIAAHPMAGTE 119 (275)
T ss_pred cCCHHHHh-c--CCEEEEeCcHH--HH--HHHHHHHhc-cCCCCEEEECccchH-HHHHHHHHh-cCCCEEecCCcCcCc
Confidence 34666754 3 55999999974 33 567778877 788888877555431 2222 2222 346899999963
Q ss_pred ---CCC------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059 133 ---PVD------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK 171 (269)
Q Consensus 133 ---P~~------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk 171 (269)
|.. .-..+-+++++.++++.++.+..+++.+|..++.+.
T Consensus 120 ~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 120 NSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred hhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 322 234677888888999999999999999999999883
No 46
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.99 E-value=0.011 Score=61.04 Aligned_cols=108 Identities=9% Similarity=0.067 Sum_probs=79.5
Q ss_pred ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CC-CCCCeEEEeeccCCC
Q psy9059 57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PI-QTPHLIIGMHYFSPV 134 (269)
Q Consensus 57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~-~~p~R~i~~HffnP~ 134 (269)
..++.+++.++| +|+.|+|.. .- .++++++.++.+++++|...+|.-+-++..+. .. ..+.|+++.||..-.
T Consensus 54 ~~~~~~~~~~aD--vVilavp~~--~~--~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~ 127 (735)
T PRK14806 54 EEDLAEAVSGAD--VIVLAVPVL--AM--EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGS 127 (735)
T ss_pred cCCHHHHhcCCC--EEEECCCHH--HH--HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcC
Confidence 457888887766 999999974 45 89999999999999888755443100233332 22 236799999996411
Q ss_pred C------------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 135 D------------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 135 ~------------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
. .-..+.++++..++++..+.+.++++.+|+.++.+
T Consensus 128 ~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~ 175 (735)
T PRK14806 128 EKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHM 175 (735)
T ss_pred CcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 1 23456889999999999999999999999999888
No 47
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.77 E-value=0.00053 Score=64.49 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=55.4
Q ss_pred cCeEEecCHHHHhcCCCCceEEeec-------------------CCCcCCCchhHHHHHHHhcCCC-CcEEecCCCCCcc
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPL-------------------QEQIPIQTPQQMSERIYMYTYS-ERLMGSNGLAMVF 111 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~v-------------------pE~l~~K~k~~l~~~l~~~~~~-~~iiaSnTS~l~~ 111 (269)
.+++.+.++ +++.||| +|++++ .++.+++ +++..+|.+++|+ -.|++||++.+
T Consensus 61 ~~I~~~~d~-~~l~~aD--iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~--~~i~~~i~~~~p~a~~iv~sNP~di-- 133 (321)
T PTZ00082 61 SKVIGTNNY-EDIAGSD--VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIM--DEVAEGIKKYCPNAFVIVITNPLDV-- 133 (321)
T ss_pred eEEEECCCH-HHhCCCC--EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecCcHHH--
Confidence 467766788 5787766 999966 6677788 9999999999987 58999999987
Q ss_pred ccccc-CCCCCC-CeEEEee
Q psy9059 112 PLQEQ-IPIQTP-HLIIGMH 129 (269)
Q Consensus 112 p~~~~-~~~~~p-~R~i~~H 129 (269)
....+ ...+.| +|++|++
T Consensus 134 ~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 134 MVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred HHHHHHHhcCCChhhEEEec
Confidence 33333 445665 8999998
No 48
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.73 E-value=0.00052 Score=63.51 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=54.3
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeec--------------CCCcCCCchhHHHHHHHhcCCCCc-EEecCCCCCcccccc
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPL--------------QEQIPIQTPQQMSERIYMYTYSER-LMGSNGLAMVFPLQE 115 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--------------pE~l~~K~k~~l~~~l~~~~~~~~-iiaSnTS~l~~p~~~ 115 (269)
..+++++.+++ ++++|| +|++++ +|++++| ++++++|+++++++. |+.||.+.+ ....
T Consensus 52 ~~~I~~t~d~~-~l~dAD--iVIit~g~p~~~~~~r~e~~~~n~~i~--~~i~~~i~~~~p~~~iIv~sNP~di--~t~~ 124 (300)
T cd01339 52 DTKVTGTNDYE-DIAGSD--VVVITAGIPRKPGMSRDDLLGTNAKIV--KEVAENIKKYAPNAIVIVVTNPLDV--MTYV 124 (300)
T ss_pred CeEEEEcCCHH-HhCCCC--EEEEecCCCCCcCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecCcHHH--HHHH
Confidence 46788877865 576665 999866 7899999 999999999998888 688999876 3333
Q ss_pred c-CCCCC-CCeEEEee
Q psy9059 116 Q-IPIQT-PHLIIGMH 129 (269)
Q Consensus 116 ~-~~~~~-p~R~i~~H 129 (269)
+ ..... |+|++|+=
T Consensus 125 ~~~~s~~~~~rviGlg 140 (300)
T cd01339 125 AYKASGFPRNRVIGMA 140 (300)
T ss_pred HHHHhCCCHHHEEEec
Confidence 3 33444 56887764
No 49
>PLN02256 arogenate dehydrogenase
Probab=96.67 E-value=0.065 Score=50.09 Aligned_cols=111 Identities=7% Similarity=-0.009 Sum_probs=75.1
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHH-HhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeecc
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERI-YMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYF 131 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l-~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hff 131 (269)
+.+..+.++++.. ++|+|+-|+|-. .= .+++.++ ..++++++++.+-+|.=..++..+ ..+....++++.||-
T Consensus 79 v~~~~~~~e~~~~-~aDvVilavp~~--~~--~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPm 153 (304)
T PLN02256 79 VSFFRDPDDFCEE-HPDVVLLCTSIL--ST--EAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPM 153 (304)
T ss_pred CeeeCCHHHHhhC-CCCEEEEecCHH--HH--HHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCC
Confidence 3456788887642 345999999852 33 5677777 566789999987777310133333 233334589999997
Q ss_pred CCCCCC-------cEEE----EeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 132 SPVDKM-------QLLE----IITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 132 nP~~~~-------~lVE----iv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
.++... +++. +++ +.++++.++.+.++.+.+|..++.+
T Consensus 154 aG~e~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~l~~~lGa~v~~~ 202 (304)
T PLN02256 154 FGPESGKGGWAGLPFVYDKVRIGD-EGEREARCERFLDIFEEEGCRMVEM 202 (304)
T ss_pred CCCCCCccccCCCeEEEecceecC-CCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 666532 2211 112 6778899999999999999999988
No 50
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.64 E-value=0.0015 Score=61.34 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=56.6
Q ss_pred cCeEEecCHHHHhcCCCCceEEeec--CCCc------------CCCchhHHHHHHHhcCCCC-cEEecCCCCCccccccc
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPL--QEQI------------PIQTPQQMSERIYMYTYSE-RLMGSNGLAMVFPLQEQ 116 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~v--pE~l------------~~K~k~~l~~~l~~~~~~~-~iiaSnTS~l~~p~~~~ 116 (269)
.+++.+.+++ +++||| +|++++ |++. +++ +++..+|+++||+. .|+.||++.+ ....+
T Consensus 60 ~~i~~~~d~~-~l~~AD--iVVitag~~~~~g~~r~dll~~n~~i~--~~i~~~i~~~~p~a~vivvsNP~di--~t~~~ 132 (319)
T PTZ00117 60 INILGTNNYE-DIKDSD--VVVITAGVQRKEEMTREDLLTINGKIM--KSVAESVKKYCPNAFVICVTNPLDC--MVKVF 132 (319)
T ss_pred eEEEeCCCHH-HhCCCC--EEEECCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecChHHH--HHHHH
Confidence 5677777887 887766 999999 8887 778 99999999999888 8889999876 33333
Q ss_pred -CCCCCC-CeEEEee
Q psy9059 117 -IPIQTP-HLIIGMH 129 (269)
Q Consensus 117 -~~~~~p-~R~i~~H 129 (269)
.....| .|++|++
T Consensus 133 ~~~s~~p~~rviG~g 147 (319)
T PTZ00117 133 QEKSGIPSNKICGMA 147 (319)
T ss_pred HHhhCCCcccEEEec
Confidence 445566 8999988
No 51
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.28 E-value=0.083 Score=48.25 Aligned_cols=159 Identities=14% Similarity=0.054 Sum_probs=99.1
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFS 132 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hffn 132 (269)
.+.+.+..|++..+| +|+=||+-. .= .+++.+|...+.++.+|-|-.++. +++.+ ....+..+++..||-.
T Consensus 53 ~~~~~~~~e~~~~aD--vVilav~p~--~~--~~vl~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~~~~v~r~mPn~ 124 (279)
T PRK07679 53 VKGTHNKKELLTDAN--ILFLAMKPK--DV--AEALIPFKEYIHNNQLIISLLAGV--STHSIRNLLQKDVPIIRAMPNT 124 (279)
T ss_pred ceEeCCHHHHHhcCC--EEEEEeCHH--HH--HHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCCeEEEECCCH
Confidence 456678888887665 999999752 22 455677777778888888866766 34433 2333445799999844
Q ss_pred CCC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch--hHH-----HHHHHHHHHHH--HHHHcCCCHHHH
Q psy9059 133 PVD-KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF--YTT-----RILSTMLSEAM--RILQEGTSPKDL 202 (269)
Q Consensus 133 P~~-~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf--I~n-----Rll~al~~EA~--~lv~eGis~edI 202 (269)
|.. ...+.=+++++..+++..+.+..++..+|+ ++.++|..=+ .+. .. ...+-|++ ..+..|++.++.
T Consensus 125 ~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a 202 (279)
T PRK07679 125 SAAILKSATAISPSKHATAEHIQTAKALFETIGL-VSVVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVA 202 (279)
T ss_pred HHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCc-EEEeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHH
Confidence 432 234555568888889999999999999998 4444321100 110 11 23333333 356788888777
Q ss_pred HHHHH-h-cCC-------CchhhHHHHhh
Q psy9059 203 DRLTK-Q-FGF-------PVGAATLSDEV 222 (269)
Q Consensus 203 D~a~~-g-~G~-------p~GPf~~~D~~ 222 (269)
-.++. . .|. -..|-.+.|.+
T Consensus 203 ~~~~~~~~~gsa~~~~~~~~~~~~l~~~v 231 (279)
T PRK07679 203 KSLILQTMIGAAEMLKASEKHPSILRKEI 231 (279)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHhc
Confidence 76653 1 222 13676666766
No 52
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.05 E-value=0.3 Score=45.48 Aligned_cols=112 Identities=11% Similarity=0.034 Sum_probs=66.5
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeE-EEee
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLI-IGMH 129 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~-i~~H 129 (269)
++++++.+. +++.++| +|+.+++- ..+ .+++++|.++++++++|.+.++++. ....+. .... .++ .+.+
T Consensus 60 ~~~~~~~~~-~~~~~~D--~vil~vk~--~~~--~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~-~~~~~g~~ 130 (341)
T PRK08229 60 SAIAFSTDP-AALATAD--LVLVTVKS--AAT--ADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPG-ATVLAGMV 130 (341)
T ss_pred ceeEeccCh-hhccCCC--EEEEEecC--cch--HHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCC-CcEEEEEE
Confidence 356667776 5665555 99999975 456 8899999999999999988888872 222232 2222 343 3334
Q ss_pred cc-----CCCCC--CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc
Q psy9059 130 YF-----SPVDK--MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG 175 (269)
Q Consensus 130 ff-----nP~~~--~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG 175 (269)
++ .|-.. ...-++.-+. . +..+++.++++..|.......|.-+
T Consensus 131 ~~~~~~~~pg~~~~~~~g~l~~~~--~-~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 131 PFNVISRGPGAFHQGTSGALAIEA--S-PALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred EEEEEecCCceEEecCCCceEecC--C-chHHHHHHHHHhcCCCceecchhHH
Confidence 32 22110 0001111111 2 3457788888888877776676543
No 53
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.02 E-value=0.058 Score=52.09 Aligned_cols=143 Identities=8% Similarity=0.090 Sum_probs=77.8
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCch-------hHHHHHHHhcCCCCcEE-ecCCCCCcccccc-c-CCCC
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTP-------QQMSERIYMYTYSERLM-GSNGLAMVFPLQE-Q-IPIQ 120 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k-------~~l~~~l~~~~~~~~ii-aSnTS~l~~p~~~-~-~~~~ 120 (269)
.++++++.+.++++.++| +|++|||+.++.|.+ .++.+.|.+. +++.++ -.||..- -.++ + ....
T Consensus 58 ~~~l~~t~~~~~~~~~ad--~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~p--gtt~~l~~~~~ 132 (388)
T PRK15057 58 KIHFNATLDKNEAYRDAD--YVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPV--GFTAAMHKKYR 132 (388)
T ss_pred CCcEEEecchhhhhcCCC--EEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCC--chHHHHHHHhh
Confidence 466777777899987766 999999999988711 2445667664 544444 4444322 1222 2 1111
Q ss_pred ------CCCeE----EEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCc-EEEEEecc-----CchhHHHH-
Q psy9059 121 ------TPHLI----IGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLK--QGK-VVITVKDG-----PGFYTTRI- 181 (269)
Q Consensus 121 ------~p~R~----i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~--lGk-~pv~vkd~-----pGfI~nRl- 181 (269)
.|+|. ..-.++||+. ||-|. +++..+++.+++.. ++. .|+++.+. --++.|-+
T Consensus 133 ~~~v~~~PE~l~~G~a~~d~~~p~r------vv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~ 204 (388)
T PRK15057 133 TENIIFSPEFLREGKALYDNLHPSR------IVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYL 204 (388)
T ss_pred cCcEEECcccccCCcccccccCCCE------EEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHH
Confidence 22222 1112233333 33332 23455667766644 443 34334221 11233333
Q ss_pred --HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059 182 --LSTMLSEAMRILQ-EGTSPKDLDRLT 206 (269)
Q Consensus 182 --l~al~~EA~~lv~-eGis~edID~a~ 206 (269)
..+++||+..+.+ .|+++.++=.++
T Consensus 205 a~~Ia~~NE~a~lae~~GiD~~eV~~a~ 232 (388)
T PRK15057 205 AMRVAYFNELDSYAESLGLNTRQIIEGV 232 (388)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence 3577899988876 688887777666
No 54
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.96 E-value=0.044 Score=50.75 Aligned_cols=115 Identities=7% Similarity=0.017 Sum_probs=80.4
Q ss_pred HHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCC--eEEEeeccCCC----
Q psy9059 61 SERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPH--LIIGMHYFSPV---- 134 (269)
Q Consensus 61 ~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~--R~i~~HffnP~---- 134 (269)
.+++.+ ||+|+=|||=. .- -++.+++..+.++++|+.=-||.=+-++.... ...|+ +|++.||..-+
T Consensus 59 ~~~~~~--aD~VivavPi~--~~--~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~-~~~~~~~~~vg~HPM~G~~~~~ 131 (279)
T COG0287 59 AEAAAE--ADLVIVAVPIE--AT--EEVLKELAPHLKKGAIVTDVGSVKSSVVEAME-KYLPGDVRFVGGHPMFGPEADA 131 (279)
T ss_pred hhhccc--CCEEEEeccHH--HH--HHHHHHhcccCCCCCEEEecccccHHHHHHHH-HhccCCCeeEecCCCCCCcccc
Confidence 555544 45999999863 33 56888888888999999988886422333322 22223 89999995444
Q ss_pred --CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHH
Q psy9059 135 --DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRIL 182 (269)
Q Consensus 135 --~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll 182 (269)
.....+=+++++.++.+.++.+.++++.+|..++.+ .+..-.+.-.++
T Consensus 132 ~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vs 182 (279)
T COG0287 132 GLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVS 182 (279)
T ss_pred cccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHH
Confidence 123456678899999999999999999999999988 443334444443
No 55
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.86 E-value=0.049 Score=49.97 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=90.5
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH---HHHHhcCCCCcEEecCCCCCccccc-c-c-CCC-CCCCeEE
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS---ERIYMYTYSERLMGSNGLAMVFPLQ-E-Q-IPI-QTPHLII 126 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~---~~l~~~~~~~~iiaSnTS~l~~p~~-~-~-~~~-~~p~R~i 126 (269)
...+.|.+|++.++| +|+=|+|-.-.++ +++ ..+.+..+++.++...| +.+ |.+ . + +.+ .+.-+++
T Consensus 40 ~~~~~s~~~~~~~ad--vVil~vp~~~~~~---~v~~g~~~l~~~~~~g~~vid~s-t~~-p~~~~~~~~~~~~~g~~~v 112 (288)
T TIGR01692 40 AQAAASPAEAAEGAD--RVITMLPAGQHVI---SVYSGDEGILPKVAKGSLLIDCS-TID-PDSARKLAELAAAHGAVFM 112 (288)
T ss_pred CeecCCHHHHHhcCC--EEEEeCCChHHHH---HHHcCcchHhhcCCCCCEEEECC-CCC-HHHHHHHHHHHHHcCCcEE
Confidence 456778999998776 9999999755554 344 56766677776655333 442 322 1 2 111 1222332
Q ss_pred EeeccCCCC-------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec-cCch---hHHHHHHH----HHHHHHH
Q psy9059 127 GMHYFSPVD-------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD-GPGF---YTTRILST----MLSEAMR 191 (269)
Q Consensus 127 ~~HffnP~~-------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd-~pGf---I~nRll~a----l~~EA~~ 191 (269)
-. |+. .-.+.-++.| +++.++++..++..+|+..+.+.+ ..|. ++|.++.+ .++||+.
T Consensus 113 da----Pv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~ 185 (288)
T TIGR01692 113 DA----PVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMA 185 (288)
T ss_pred EC----CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 322 1234444554 568899999999999999988854 3444 44554433 5789998
Q ss_pred HHH-cCCCHHHHHHHHH-hcC
Q psy9059 192 ILQ-EGTSPKDLDRLTK-QFG 210 (269)
Q Consensus 192 lv~-eGis~edID~a~~-g~G 210 (269)
+.+ .|++++++-.++. +.|
T Consensus 186 la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 186 LGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred HHHHcCCCHHHHHHHHhcCCc
Confidence 875 6889999988886 655
No 56
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=95.84 E-value=0.027 Score=51.09 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=72.3
Q ss_pred HHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccCCC-----
Q psy9059 61 SERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFSPV----- 134 (269)
Q Consensus 61 ~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~HffnP~----- 134 (269)
.+++.++| +|+=|+|-+- = .+++.++.++.++++++.--+|.=.-+...+. ......+|++.||..-+
T Consensus 40 ~~~~~~~D--lvvlavP~~~--~--~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~ 113 (258)
T PF02153_consen 40 IEAVEDAD--LVVLAVPVSA--I--EDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGP 113 (258)
T ss_dssp HHHGGCCS--EEEE-S-HHH--H--HHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSG
T ss_pred HhHhcCCC--EEEEcCCHHH--H--HHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccc
Confidence 67887766 9999998744 4 67999999999999999977775311232232 23346799999995444
Q ss_pred -----C--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 135 -----D--KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 135 -----~--~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
. .-..+=|++++.|+++.++.+.+|++.+|..++.+
T Consensus 114 ~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 114 EAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp GG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred hhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 2 23567788999999999999999999999999987
No 57
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.58 E-value=0.2 Score=47.57 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=87.9
Q ss_pred CHHHHhcCCCCceEEeecCCCcCCCchhHHH-HHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccCCCCC
Q psy9059 59 TYSERLMGSNGLAMVFPLQEQIPIQTPQQMS-ERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFSPVDK 136 (269)
Q Consensus 59 ~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~-~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~HffnP~~~ 136 (269)
|.+|+++.+| +|+=++|.. .- .+++ ++|.++++++++| |-.+++ ++.... .....-+++-+.|=.|.+.
T Consensus 66 s~~eaa~~AD--VVvLaVPd~--~~--~~V~~~~I~~~Lk~g~iL-~~a~G~--~i~~~~~~p~~~~~Vi~vaPn~Pg~~ 136 (330)
T PRK05479 66 TVAEAAKWAD--VIMILLPDE--VQ--AEVYEEEIEPNLKEGAAL-AFAHGF--NIHFGQIVPPADVDVIMVAPKGPGHL 136 (330)
T ss_pred CHHHHHhcCC--EEEEcCCHH--HH--HHHHHHHHHhcCCCCCEE-EECCCC--ChhhceeccCCCCcEEEeCCCCCchh
Confidence 8999998877 999999953 33 6777 8899999999999 888888 455432 2222345666667666652
Q ss_pred CcEE--------EEe-CCCCCCHHHHHHHHHHHHhCCcEEE-----EEeccC-------chhHHHHHHHHHHHHHHH-HH
Q psy9059 137 MQLL--------EII-TTEQTSQDTAASAVAVGLKQGKVVI-----TVKDGP-------GFYTTRILSTMLSEAMRI-LQ 194 (269)
Q Consensus 137 ~~lV--------Eiv-~~~~Ts~e~~~~~~~~~~~lGk~pv-----~vkd~p-------GfI~nRll~al~~EA~~l-v~ 194 (269)
++=. =++ .....+.+..+.+.+++..+|..+. ..++.. .-++.--+..++..++.. ++
T Consensus 137 vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~e 216 (330)
T PRK05479 137 VRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVE 216 (330)
T ss_pred hhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHH
Confidence 2111 022 2344557889999999999999876 332211 123333345677777754 46
Q ss_pred cCCCHHHH
Q psy9059 195 EGTSPKDL 202 (269)
Q Consensus 195 eGis~edI 202 (269)
.|++|+..
T Consensus 217 aG~~pe~A 224 (330)
T PRK05479 217 AGYQPEMA 224 (330)
T ss_pred cCCCHHHH
Confidence 78777654
No 58
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.50 E-value=0.09 Score=50.76 Aligned_cols=149 Identities=9% Similarity=0.042 Sum_probs=91.4
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcC------CCchhHHHHHHHhcCCCCcEEecCCCCCccccc-cc-CCC-CC
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIP------IQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ-EQ-IPI-QT 121 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~------~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~-~~-~~~-~~ 121 (269)
.|++++++++++++.++| +|+-|||...+ ++.=.+..+.|.+++++++++.. +|+.+...+ ++ ... .+
T Consensus 61 ~g~l~~~~~~~~~~~~ad--vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 61 AGRLRATTDYEDAIRDAD--VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILER 137 (411)
T ss_pred cCCeEEECCHHHHHhhCC--EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHh
Confidence 367999999999997766 99999987543 22225666788888888776653 344421111 12 111 11
Q ss_pred -------CCeEEEeeccCCCCCCcEE---------EEeCCCCCCHHHHHHHHHHHHhCC-cEEEEEeccC-----chhHH
Q psy9059 122 -------PHLIIGMHYFSPVDKMQLL---------EIITTEQTSQDTAASAVAVGLKQG-KVVITVKDGP-----GFYTT 179 (269)
Q Consensus 122 -------p~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~e~~~~~~~~~~~lG-k~pv~vkd~p-----GfI~n 179 (269)
.+-.++. +|....+-- =++-| .+++..+++..++..++ +.++.+.+.- ..+.|
T Consensus 138 ~~g~~~~~d~~v~~---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N 212 (411)
T TIGR03026 138 ASGLKLGEDFYLAY---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN 212 (411)
T ss_pred hcCCCCCCCceEEE---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH
Confidence 1112233 343322211 24555 58899999999999997 5676664321 12333
Q ss_pred HH---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059 180 RI---LSTMLSEAMRILQ-EGTSPKDLDRLTK 207 (269)
Q Consensus 180 Rl---l~al~~EA~~lv~-eGis~edID~a~~ 207 (269)
-+ ..+++||+..+.+ .|++++++=.++.
T Consensus 213 ~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 213 TFRAVKIAFANELARICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 32 2678899998876 6888888877764
No 59
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.46 E-value=0.19 Score=46.25 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=90.2
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc----c-cC-CCCCCCeE
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ----E-QI-PIQTPHLI 125 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~----~-~~-~~~~p~R~ 125 (269)
.+++++++.++++.++| +|+.|+|. ... .+++.+|.+++++++++.+.++|+..... + +. ......++
T Consensus 57 ~~~~~~~~~~~~~~~~D--~vi~~v~~--~~~--~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~ 130 (325)
T PRK00094 57 DNLRATTDLAEALADAD--LILVAVPS--QAL--REVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI 130 (325)
T ss_pred CCeEEeCCHHHHHhCCC--EEEEeCCH--HHH--HHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce
Confidence 35778889999987766 99999998 345 88999999999999988877766631111 1 11 11110121
Q ss_pred EEeeccCCCC-------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchh---------------------
Q psy9059 126 IGMHYFSPVD-------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFY--------------------- 177 (269)
Q Consensus 126 i~~HffnP~~-------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI--------------------- 177 (269)
.. ...|.. ...++.+.. .+.+.++++..+++..|..+....|..|..
T Consensus 131 ~~--~~~P~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~ 205 (325)
T PRK00094 131 AV--LSGPSFAKEVARGLPTAVVIAS---TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGL 205 (325)
T ss_pred EE--EECccHHHHHHcCCCcEEEEEe---CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCC
Confidence 11 122332 123344432 367889999999999998776655544421
Q ss_pred -HHH---HHHHHHHHHHHHHH-cCCCHHHHHHH
Q psy9059 178 -TTR---ILSTMLSEAMRILQ-EGTSPKDLDRL 205 (269)
Q Consensus 178 -~nR---ll~al~~EA~~lv~-eGis~edID~a 205 (269)
.|. +....++|++.+.+ .|++++.+-..
T Consensus 206 ~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~ 238 (325)
T PRK00094 206 GDNARAALITRGLAEITRLGVALGANPETFLGL 238 (325)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCChhhhhcc
Confidence 122 45667788888865 68877766543
No 60
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.87 E-value=0.31 Score=43.13 Aligned_cols=137 Identities=6% Similarity=0.113 Sum_probs=88.1
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS 132 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn 132 (269)
.....+..+++.++| +|+-++|-. .= +++.+++..+.+ +.+|-|-+.++ +++.+. ......+++-+||-.
T Consensus 54 ~~~~~~~~~~~~~~D--iViiavp~~--~~--~~v~~~l~~~~~-~~~vis~~~gi--~~~~l~~~~~~~~~v~r~~Pn~ 124 (245)
T PRK07634 54 VSTTTDWKQHVTSVD--TIVLAMPPS--AH--EELLAELSPLLS-NQLVVTVAAGI--GPSYLEERLPKGTPVAWIMPNT 124 (245)
T ss_pred cEEeCChHHHHhcCC--EEEEecCHH--HH--HHHHHHHHhhcc-CCEEEEECCCC--CHHHHHHHcCCCCeEEEECCcH
Confidence 345578889987666 999999863 33 567777877666 45777777777 555553 344445777788844
Q ss_pred CCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec------------cCchhHHHHHHHHHHHHHHHHHcCC
Q psy9059 133 PVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD------------GPGFYTTRILSTMLSEAMRILQEGT 197 (269)
Q Consensus 133 P~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd------------~pGfI~nRll~al~~EA~~lv~eGi 197 (269)
|.. -++.+ ..+...+++..+.+.+++..+|..+. +.+ .|+|+ ..++.++.. +.++.|+
T Consensus 125 a~~v~~g~~~~--~~~~~~~~~~~~~v~~lf~~~G~~~~-~~e~~~~~~~a~~gs~pa~~-~~~~~a~~~---~~~~~Gl 197 (245)
T PRK07634 125 AAEIGKSISLY--TMGQSVNETHKETLQLILKGIGTSQL-CTEEEVHQLTAVTGSAPAFL-YYFAESLIE---ATKSYGV 197 (245)
T ss_pred HHHHhcCCeEE--eeCCCCCHHHHHHHHHHHHhCCCEEE-ECHHHcchHHhhhcchHHHH-HHHHHHHHH---HHHHcCC
Confidence 432 22333 23456788999999999999999986 432 23332 233333332 2456788
Q ss_pred CHHHHHHHH
Q psy9059 198 SPKDLDRLT 206 (269)
Q Consensus 198 s~edID~a~ 206 (269)
+.++--+++
T Consensus 198 ~~~~a~~~~ 206 (245)
T PRK07634 198 DEETAKHLV 206 (245)
T ss_pred CHHHHHHHH
Confidence 777766654
No 61
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.77 E-value=0.012 Score=54.35 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=43.4
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeec--------------CCCcCCCchhHHHHHHHhcCCCC-cEEecCCCCC
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPL--------------QEQIPIQTPQQMSERIYMYTYSE-RLMGSNGLAM 109 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--------------pE~l~~K~k~~l~~~l~~~~~~~-~iiaSnTS~l 109 (269)
.++++++.++ +++.+|| +|+.++ .++++++ ++++++|.+++++. .|+.||.+..
T Consensus 56 ~~~i~~~~d~-~~~~~aD--iVii~~~~p~~~~~~r~~~~~~n~~i~--~~i~~~i~~~~~~~~viv~tNP~d~ 124 (307)
T PRK06223 56 DTKITGTNDY-EDIAGSD--VVVITAGVPRKPGMSRDDLLGINAKIM--KDVAEGIKKYAPDAIVIVVTNPVDA 124 (307)
T ss_pred CcEEEeCCCH-HHHCCCC--EEEECCCCCCCcCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecCcHHH
Confidence 4678888888 4676665 999886 4777888 99999999999876 7788888765
No 62
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=94.36 E-value=3.3 Score=38.77 Aligned_cols=129 Identities=10% Similarity=0.047 Sum_probs=83.3
Q ss_pred hcccccCCCCCCCcCeEE----------ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCC
Q psy9059 39 ALCTTVPLVSTSHTGITY----------LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLA 108 (269)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~----------~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~ 108 (269)
...-++|-|+ +|-|.| ++|-.||++++| +++==-|.- ... -++.+++..++++++||+.. -+
T Consensus 106 ~~a~~~pkpp--k~~ihf~~pEdaGvkVtsDD~EAvk~ae--i~I~ftPfG-~~t--~~Iikki~~~ipEgAII~~t-CT 177 (342)
T PRK00961 106 AKAKELPKPP--KGCIHFVHPEDLGLKVTTDDREAVADAD--IVITWLPKG-GMQ--PDIIEKFADDIKEGAIVTHA-CT 177 (342)
T ss_pred HHHhhCCCCC--ccceeecCHHHcCceEecCcHHHhcCCC--EEEEecCCC-CCc--hHHHHHHHhhCCCCCEEecc-cc
Confidence 3445567777 665555 588899998877 888887763 223 57999999999999999843 33
Q ss_pred Ccccccc--c-CCCCCCC-eEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchh
Q psy9059 109 MVFPLQE--Q-IPIQTPH-LIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFY 177 (269)
Q Consensus 109 l~~p~~~--~-~~~~~p~-R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI 177 (269)
.+ |... + +.++|.+ .+..+||-.=|. ++=--.+.-.-.++|.+++..+++++.|+.++.+ .|.-+-|
T Consensus 178 Ip-t~~ly~~le~l~R~DvgIsS~HPaaVPg-t~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV 249 (342)
T PRK00961 178 IP-TTKFAKIFKDLGRDDLNVTSYHPGAVPE-MKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPV 249 (342)
T ss_pred CC-HHHHHHHHHHhCcccCCeeccCCCCCCC-CCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchh
Confidence 32 2222 1 4555433 566667653222 2211111223457899999999999999999988 5444433
No 63
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=94.18 E-value=5 Score=37.65 Aligned_cols=127 Identities=9% Similarity=0.034 Sum_probs=83.8
Q ss_pred hcccccCCCCCCCcCeEE----------ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCC
Q psy9059 39 ALCTTVPLVSTSHTGITY----------LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLA 108 (269)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~----------~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~ 108 (269)
...-++|-|+ +|-|.| ++|-.||++++| +++==-|.- ... -++.+++-.+.|+++||+.. -+
T Consensus 104 ~~a~~~pkpp--k~~ihf~~pEdaGvkVtsDD~EAv~~ae--i~I~ftPfG-~~q--~~Iikkii~~lpEgAII~~t-CT 175 (340)
T TIGR01723 104 AKAKELPKPP--KGAIHFVHPEDLGLKVTTDDREAVEDAD--IIITWLPKG-NKQ--PDIIKKFIDDIPEGAIVTHA-CT 175 (340)
T ss_pred HHHhhCCCCC--cceeeecCHHHcCceEecCcHHHhcCCC--EEEEEcCCC-CCc--hHHHHHHHhhCCCCCEEecc-cc
Confidence 3445567777 565555 588899998877 888888863 223 57999999999999999843 33
Q ss_pred Ccccccc---cCCCCCCC-eEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCc
Q psy9059 109 MVFPLQE---QIPIQTPH-LIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPG 175 (269)
Q Consensus 109 l~~p~~~---~~~~~~p~-R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pG 175 (269)
.+ |... .+.++|.+ .+..+||-.=|..=.=+=|+.+ -.++|.+++..+++++.|+.|..+ .+.-+
T Consensus 176 Ip-t~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~PA~Lvs 245 (340)
T TIGR01723 176 IP-TTKFAKIFEDLGREDLNVTSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKMPANLLG 245 (340)
T ss_pred CC-hHHHHHHHHhhCcccCCeeccCCCCCCCCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 32 3322 24555432 4666676532322123334444 457788999999999999999988 44333
No 64
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.13 E-value=0.83 Score=41.89 Aligned_cols=140 Identities=10% Similarity=0.112 Sum_probs=93.5
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS 132 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn 132 (269)
.+.+++..|.+.++| +|+=|++- ..= .+++++|..+.+++.++-|=-.+. +++.+. .+..+.+++-+=|--
T Consensus 51 ~~~~~~~~e~~~~aD--iIiLavkP--~~~--~~vl~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~~~~vvR~MPN~ 122 (272)
T PRK12491 51 ITITTNNNEVANSAD--ILILSIKP--DLY--SSVINQIKDQIKNDVIVVTIAAGK--SIKSTENEFDRKLKVIRVMPNT 122 (272)
T ss_pred cEEeCCcHHHHhhCC--EEEEEeCh--HHH--HHHHHHHHHhhcCCcEEEEeCCCC--cHHHHHHhcCCCCcEEEECCCh
Confidence 355678888887666 99999983 334 678888888888999999999887 666653 344445666655544
Q ss_pred CCCCCcE-EEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec------------cCchhHHHHHHHHHHHHHHHHHcCCCH
Q psy9059 133 PVDKMQL-LEIITTEQTSQDTAASAVAVGLKQGKVVITVKD------------GPGFYTTRILSTMLSEAMRILQEGTSP 199 (269)
Q Consensus 133 P~~~~~l-VEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd------------~pGfI~nRll~al~~EA~~lv~eGis~ 199 (269)
|...-.- .=+..++..+++..+.+.+++..+|+. +.+.| .|+|+ -.++.++.. +.++.|++.
T Consensus 123 ~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~-~~~~eal~~---a~v~~Gl~~ 197 (272)
T PRK12491 123 PVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYV-YMFIEAMAD---AAVLGGMPR 197 (272)
T ss_pred HHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHH-HHHHHHHHH---HHHHcCCCH
Confidence 4432222 223477788898999999999999997 44543 45654 233333333 334568877
Q ss_pred HHHHHHH
Q psy9059 200 KDLDRLT 206 (269)
Q Consensus 200 edID~a~ 206 (269)
++-.+..
T Consensus 198 ~~A~~l~ 204 (272)
T PRK12491 198 KQAYKFA 204 (272)
T ss_pred HHHHHHH
Confidence 7666654
No 65
>PRK07680 late competence protein ComER; Validated
Probab=94.09 E-value=0.54 Score=42.66 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=84.3
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccC
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFS 132 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~Hffn 132 (269)
+++...+..+++.++| +|+-+++-. .= .+++++|..+.+++.+|.|-+++. +++.+...- +.+++-++|-.
T Consensus 49 g~~~~~~~~~~~~~aD--iVilav~p~--~~--~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~-~~~~~r~~p~~ 119 (273)
T PRK07680 49 GIHVAKTIEEVISQSD--LIFICVKPL--DI--YPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLV-PCQVARIIPSI 119 (273)
T ss_pred CeEEECCHHHHHHhCC--EEEEecCHH--HH--HHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHc-CCCEEEECCCh
Confidence 4566778888887766 999999632 12 467777877787888888888876 454443211 23444445422
Q ss_pred CCCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec------------cCchhHHHHHHHHHHHHHHHHH-cCCC
Q psy9059 133 PVDK-MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD------------GPGFYTTRILSTMLSEAMRILQ-EGTS 198 (269)
Q Consensus 133 P~~~-~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd------------~pGfI~nRll~al~~EA~~lv~-eGis 198 (269)
|... .-..=++.++..+++..+.+.+++..+|. ++.+.+ .|+|+. .++.+++..+ ++ .|++
T Consensus 120 ~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~-~~~~al~~~~---~~~~Gl~ 194 (273)
T PRK07680 120 TNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFS-YLLQRFIDAA---VEETNIS 194 (273)
T ss_pred HHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHH-HHHHHHHHHH---HHhcCCC
Confidence 2110 01111234666788888999999999995 555532 233443 3445555554 34 6887
Q ss_pred HHHHHHH
Q psy9059 199 PKDLDRL 205 (269)
Q Consensus 199 ~edID~a 205 (269)
.++.-++
T Consensus 195 ~~~a~~~ 201 (273)
T PRK07680 195 KEEATTL 201 (273)
T ss_pred HHHHHHH
Confidence 7665544
No 66
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=93.58 E-value=1.7 Score=38.97 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=91.4
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS 132 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn 132 (269)
.+..++..+.+..+| +|+=||+ .-++ .+++.++.....++.+|.|-+.++ +++.+. .+....+++-+=|-.
T Consensus 31 ~~~~~~~~e~~~~aD--iIiLaVk-P~~i---~~vl~~l~~~~~~~~~ivS~~agi--~~~~l~~~~~~~~~ivR~mPn~ 102 (245)
T TIGR00112 31 IVASSDAQEAVKEAD--VVFLAVK-PQDL---EEVLSELKSEKGKDKLLISIAAGV--TLEKLSQLLGGTRRVVRVMPNT 102 (245)
T ss_pred cEEeCChHHHHhhCC--EEEEEeC-HHHH---HHHHHHHhhhccCCCEEEEecCCC--CHHHHHHHcCCCCeEEEECCCh
Confidence 455678888887666 9999998 3333 467777777667788999999988 676753 343333555444433
Q ss_pred CCCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-e----------ccCchhHHHHHHHHHHHHHHHHHcCCCHH
Q psy9059 133 PVDK-MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-K----------DGPGFYTTRILSTMLSEAMRILQEGTSPK 200 (269)
Q Consensus 133 P~~~-~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-k----------d~pGfI~nRll~al~~EA~~lv~eGis~e 200 (269)
|... .-..=+..++..+++..+.+.+++..+|+...+- + ..|+|+ -.++.++.. +.++.|++++
T Consensus 103 ~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~-~~~~~al~~---~~v~~Gl~~~ 178 (245)
T TIGR00112 103 PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYV-FLFIEALAD---AGVKQGLPRE 178 (245)
T ss_pred HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHH-HHHHHHHHH---HHHHcCCCHH
Confidence 3222 1234456788889999999999999999766432 1 134543 223333333 4566799888
Q ss_pred HHHHHH
Q psy9059 201 DLDRLT 206 (269)
Q Consensus 201 dID~a~ 206 (269)
+-.+..
T Consensus 179 ~A~~lv 184 (245)
T TIGR00112 179 LALELA 184 (245)
T ss_pred HHHHHH
Confidence 887765
No 67
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.34 E-value=0.2 Score=46.63 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=96.6
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCcccccc--c-CCCCCCCeEEE
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQTPHLIIG 127 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~~p~R~i~ 127 (269)
+.+...|..|++.++| .|+=++|..-+++ .=+| ..+.+.+++.+++--.|+.- |.+- + +.+.- -|
T Consensus 44 Ga~~a~s~~eaa~~aD--vVitmv~~~~~V~--~V~~g~~g~~~~~~~G~i~IDmSTis--p~~a~~~a~~~~~----~G 113 (286)
T COG2084 44 GATVAASPAEAAAEAD--VVITMLPDDAAVR--AVLFGENGLLEGLKPGAIVIDMSTIS--PETARELAAALAA----KG 113 (286)
T ss_pred CCcccCCHHHHHHhCC--EEEEecCCHHHHH--HHHhCccchhhcCCCCCEEEECCCCC--HHHHHHHHHHHHh----cC
Confidence 4577788899998877 9999999988887 6666 46666677777766544432 3222 2 11111 24
Q ss_pred eecc-CCCCC------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe-ccCch---hHHHHHH----HHHHHHHHH
Q psy9059 128 MHYF-SPVDK------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK-DGPGF---YTTRILS----TMLSEAMRI 192 (269)
Q Consensus 128 ~Hff-nP~~~------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk-d~pGf---I~nRll~----al~~EA~~l 192 (269)
.+|. -|+.- .--+=|+-| -+++.+++++.+++.+|+..+++. ...|. ++|.++. +.+.||+.+
T Consensus 114 ~~~lDAPVsGg~~~A~~GtLtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~l 191 (286)
T COG2084 114 LEFLDAPVSGGVPGAAAGTLTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALAL 191 (286)
T ss_pred CcEEecCccCCchhhhhCceEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 23321 112223333 378999999999999999999994 43443 5666654 455788888
Q ss_pred HH-cCCCHHHHHHHHH-hcC
Q psy9059 193 LQ-EGTSPKDLDRLTK-QFG 210 (269)
Q Consensus 193 v~-eGis~edID~a~~-g~G 210 (269)
.+ .|++++-+..++. +.+
T Consensus 192 a~k~Gld~~~~~~vi~~~~~ 211 (286)
T COG2084 192 AEKAGLDPDVVLEVISGGAA 211 (286)
T ss_pred HHHcCCCHHHHHHHHhcccc
Confidence 76 6889999999997 544
No 68
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.08 E-value=0.52 Score=43.53 Aligned_cols=145 Identities=12% Similarity=0.065 Sum_probs=84.7
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCcccccc--c-CCC-CCCCeEEE
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQE--Q-IPI-QTPHLIIG 127 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~-~~p~R~i~ 127 (269)
.+.+.|..|++.++| +|+.|+|.+..++ .-++. .+-..+++++++ .++|+.+ |.+. + ..+ .+.-+++-
T Consensus 45 ~~~~~s~~~~~~~aD--vVi~~vp~~~~~~--~vl~~~~~i~~~l~~g~lv-id~sT~~-p~~~~~l~~~l~~~g~~~ld 118 (296)
T PRK15461 45 ATPAASPAQAAAGAE--FVITMLPNGDLVR--SVLFGENGVCEGLSRDALV-IDMSTIH-PLQTDKLIADMQAKGFSMMD 118 (296)
T ss_pred CcccCCHHHHHhcCC--EEEEecCCHHHHH--HHHcCcccHhhcCCCCCEE-EECCCCC-HHHHHHHHHHHHHcCCcEEE
Confidence 456779999997766 9999999987666 55542 355566777766 4444442 3221 2 111 22223332
Q ss_pred eeccC-CC--CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cc---hhHHH----HHHHHHHHHHHHHH-c
Q psy9059 128 MHYFS-PV--DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PG---FYTTR----ILSTMLSEAMRILQ-E 195 (269)
Q Consensus 128 ~Hffn-P~--~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pG---fI~nR----ll~al~~EA~~lv~-e 195 (269)
.--.. |. ..-.++=++.| ++++++++..+++.+|+..+++.+. .| -++|- ....++.||+.+.+ .
T Consensus 119 apV~g~~~~a~~g~l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~ 195 (296)
T PRK15461 119 VPVGRTSDNAITGTLLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEAL 195 (296)
T ss_pred ccCCCCHHHHHhCcEEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11111 11 11122223333 7889999999999999988887542 11 12332 23556689987765 7
Q ss_pred CCCHHHHHHHHH
Q psy9059 196 GTSPKDLDRLTK 207 (269)
Q Consensus 196 Gis~edID~a~~ 207 (269)
|++++.+=.++.
T Consensus 196 Gld~~~~~~~l~ 207 (296)
T PRK15461 196 GLSFDVALKVMS 207 (296)
T ss_pred CCCHHHHHHHHh
Confidence 888887544444
No 69
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.86 E-value=1.6 Score=39.97 Aligned_cols=141 Identities=9% Similarity=0.013 Sum_probs=89.6
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS 132 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn 132 (269)
.+.+.+..+++.++| +|+-|+|= ..= .+++.++.++.+++++|-|-+.++ +++++. .+. ..|++-+=|--
T Consensus 52 ~~~~~~~~e~~~~aD--vVilavpp--~~~--~~vl~~l~~~l~~~~~ivS~~aGi--~~~~l~~~~~-~~~vvR~MPN~ 122 (277)
T PRK06928 52 VELADNEAEIFTKCD--HSFICVPP--LAV--LPLLKDCAPVLTPDRHVVSIAAGV--SLDDLLEITP-GLQVSRLIPSL 122 (277)
T ss_pred eEEeCCHHHHHhhCC--EEEEecCH--HHH--HHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcC-CCCEEEEeCcc
Confidence 345678888887766 99999983 223 467788877788888888888887 555553 222 23565555544
Q ss_pred CCCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-----------eccCchhHHHHHHHHHHHHHHHHHcCCCHH
Q psy9059 133 PVDKMQ-LLEIITTEQTSQDTAASAVAVGLKQGKVVITV-----------KDGPGFYTTRILSTMLSEAMRILQEGTSPK 200 (269)
Q Consensus 133 P~~~~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-----------kd~pGfI~nRll~al~~EA~~lv~eGis~e 200 (269)
|...-. ..=+..++..+++-.+.+.+++..+|+...+= ...|+|+ -.++.++...+... .|++.+
T Consensus 123 ~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d~~tal~gsgPA~~-~~~~~al~~a~~~~--ggl~~~ 199 (277)
T PRK06928 123 TSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSPGFI-AAIFEEFAEAAVRN--SSLSDE 199 (277)
T ss_pred HHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhhCceeeeeecCHHHHH-HHHHHHHHHHHHHh--CCCCHH
Confidence 433221 22234567788899999999999999876431 2256665 45555665555432 156666
Q ss_pred HHHHHH
Q psy9059 201 DLDRLT 206 (269)
Q Consensus 201 dID~a~ 206 (269)
+-.+..
T Consensus 200 ~a~~l~ 205 (277)
T PRK06928 200 EAFQFL 205 (277)
T ss_pred HHHHHH
Confidence 555443
No 70
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.70 E-value=0.46 Score=44.04 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=77.6
Q ss_pred cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhc-CCCCcEEecCCCCCccccccc---C--CCCC-CCeEEEeec
Q psy9059 58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMY-TYSERLMGSNGLAMVFPLQEQ---I--PIQT-PHLIIGMHY 130 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~-~~~~~iiaSnTS~l~~p~~~~---~--~~~~-p~R~i~~Hf 130 (269)
.++++++.++| +|+-++|. +.- +++++++..+ .++++++.+.|.++. |.+.. + .... ..+++.+
T Consensus 39 ~~~~~~~~~ad--vvi~~vp~--~~~--~~v~~~l~~~~~~~~~ivi~~s~gi~-~~~~~~~s~~~~~~~~~~~v~~i-- 109 (308)
T PRK14619 39 LSLAAVLADAD--VIVSAVSM--KGV--RPVAEQVQALNLPPETIIVTATKGLD-PETTRTPSQIWQAAFPNHPVVVL-- 109 (308)
T ss_pred CCHHHHHhcCC--EEEEECCh--HHH--HHHHHHHHHhcCCCCcEEEEeCCccc-CCCCcCHHHHHHHHcCCCceEEE--
Confidence 57899997766 99999997 356 7889999874 688898888877662 32111 0 0000 1122211
Q ss_pred cCCCC------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc----------------------hhHH---
Q psy9059 131 FSPVD------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG----------------------FYTT--- 179 (269)
Q Consensus 131 fnP~~------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG----------------------fI~n--- 179 (269)
..|.. -.+..=++. ..+++..+.+..++...|..+....|.-| +..|
T Consensus 110 ~gp~~a~ei~~~~~~~~~~a--g~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~ 187 (308)
T PRK14619 110 SGPNLSKEIQQGLPAATVVA--SRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKA 187 (308)
T ss_pred ECCCcHHHHhcCCCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHH
Confidence 12211 011111111 23678889999999999888875555333 1112
Q ss_pred HHHHHHHHHHHHHHH-cCCCHH
Q psy9059 180 RILSTMLSEAMRILQ-EGTSPK 200 (269)
Q Consensus 180 Rll~al~~EA~~lv~-eGis~e 200 (269)
.++...++|++.+.+ .|++++
T Consensus 188 a~~~~~~~E~~~l~~~~G~~~~ 209 (308)
T PRK14619 188 ALVTRALPEMIRVGTHLGAQTE 209 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 334556678887765 576443
No 71
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.17 E-value=2.5 Score=37.94 Aligned_cols=134 Identities=10% Similarity=0.004 Sum_probs=78.4
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS 132 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn 132 (269)
.+.+.+..|++..+| +|+-|++- +.- .+++.++. ..++.++-|-.++. +++.+. ......+++-++|-.
T Consensus 49 ~~~~~~~~~~~~~aD--vVilav~p--~~~--~~vl~~l~--~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~ 118 (258)
T PRK06476 49 VRIAKDNQAVVDRSD--VVFLAVRP--QIA--EEVLRALR--FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLP 118 (258)
T ss_pred ceEeCCHHHHHHhCC--EEEEEeCH--HHH--HHHHHHhc--cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCC
Confidence 456678889887766 99999983 444 56676663 34566666655555 555553 333335666777655
Q ss_pred CCCCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec--cC------chhHHHHHHHHHHHHHHH-HHcCCCHHHH
Q psy9059 133 PVDKM-QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD--GP------GFYTTRILSTMLSEAMRI-LQEGTSPKDL 202 (269)
Q Consensus 133 P~~~~-~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd--~p------GfI~nRll~al~~EA~~l-v~eGis~edI 202 (269)
|.... .+.-+.++ .+.+..++..+|..+.+..+ .+ ++.++=+ .++.++..+ .+.|+++++.
T Consensus 119 ~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~~--~~~~~~~~~~~~~Gl~~~~a 189 (258)
T PRK06476 119 FVAERKGVTAIYPP-------DPFVAALFDALGTAVECDSEEEYDLLAAASALMATYF--GILETATGWLEEQGLKRQKA 189 (258)
T ss_pred hhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEECChHhccceeehhccHHHHH--HHHHHHHHHHHHcCCCHHHH
Confidence 54321 11122222 15788899999988764322 11 2333322 355566544 5678887776
Q ss_pred HHHH
Q psy9059 203 DRLT 206 (269)
Q Consensus 203 D~a~ 206 (269)
-+++
T Consensus 190 ~~~~ 193 (258)
T PRK06476 190 RAYL 193 (258)
T ss_pred HHHH
Confidence 6654
No 72
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.08 E-value=1.2 Score=42.96 Aligned_cols=104 Identities=9% Similarity=0.066 Sum_probs=68.5
Q ss_pred ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhc---CCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCC
Q psy9059 57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMY---TYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSP 133 (269)
Q Consensus 57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~---~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP 133 (269)
..+.++++.++| +|+=|+|-+-- .++++++.++ ++++++|.=-+|.=.-++.... ....+|++.||..-
T Consensus 42 ~~~~~~~v~~aD--lVilavPv~~~----~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~--~~~~~fVG~HPMaG 113 (370)
T PRK08818 42 SLDPATLLQRAD--VLIFSAPIRHT----AALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAML--ASQAEVVGLHPMTA 113 (370)
T ss_pred cCCHHHHhcCCC--EEEEeCCHHHH----HHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHHH--hcCCCEEeeCCCCC
Confidence 346788887766 99999998333 4477777765 6899999855553210233322 22346999999654
Q ss_pred CCC-----CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 134 VDK-----MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 134 ~~~-----~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
+.. ...+=+++. ..++.++.+.++.+.+|..++.+
T Consensus 114 ~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 114 PPKSPTLKGRVMVVCEA--RLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred CCCCcccCCCeEEEeCC--CchhHHHHHHHHHHHcCCEEEEc
Confidence 432 222224544 44555788999999999999988
No 73
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.09 E-value=0.17 Score=45.91 Aligned_cols=48 Identities=13% Similarity=0.292 Sum_probs=40.3
Q ss_pred CcCeEEecCHHHHhcCCCCceEEe--------------ecCCCcCCCchhHHHHHHHhcCCCCcEEe
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVF--------------PLQEQIPIQTPQQMSERIYMYTYSERLMG 103 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E--------------~vpE~l~~K~k~~l~~~l~~~~~~~~iia 103 (269)
..++++++++.|++.||| +|++ .+.++.+++ +++.++|+++| +++++-
T Consensus 55 ~~~i~~~~d~~~~~~~aD--iVv~t~~~~~~~g~~r~~~~~~n~~i~--~~i~~~i~~~~-p~a~~i 116 (263)
T cd00650 55 DIKVSITDDPYEAFKDAD--VVIITAGVGRKPGMGRLDLLKRNVPIV--KEIGDNIEKYS-PDAWII 116 (263)
T ss_pred CcEEEECCchHHHhCCCC--EEEECCCCCCCcCCCHHHHHHHHHHHH--HHHHHHHHHHC-CCeEEE
Confidence 368888899999998877 9999 677888899 99999999999 555544
No 74
>PLN02712 arogenate dehydrogenase
Probab=89.92 E-value=1.8 Score=44.80 Aligned_cols=112 Identities=9% Similarity=0.049 Sum_probs=72.5
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHh-cCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYM-YTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF 131 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~-~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff 131 (269)
+.+..+++|++.. ++|+|+=|+|- ..= .+++.++.. .+++++|+..-+|+=..+...+. .....-++++.||.
T Consensus 412 v~~~~~~~el~~~-~aDvVILavP~--~~~--~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm 486 (667)
T PLN02712 412 VSYFSDADDLCEE-HPEVILLCTSI--LST--EKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPM 486 (667)
T ss_pred CeEeCCHHHHHhc-CCCEEEECCCh--HHH--HHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCC
Confidence 3566788887753 24599999993 333 566777764 57889998877665211333332 33333479999997
Q ss_pred CCCCCCc-----EE-----EEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 132 SPVDKMQ-----LL-----EIITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 132 nP~~~~~-----lV-----Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
.++.... +. =++.++.+..+.++.+.++++++|..++.+
T Consensus 487 ~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m 535 (667)
T PLN02712 487 FGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM 535 (667)
T ss_pred CCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence 7665321 11 112345556667777789999999999988
No 75
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.63 E-value=5.7 Score=36.63 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=83.8
Q ss_pred cCHHHHhcC-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCC-CCCCeEEEeeccC
Q psy9059 58 YTYSERLMG-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPI-QTPHLIIGMHYFS 132 (269)
Q Consensus 58 ~~~~~a~~~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~-~~p~R~i~~Hffn 132 (269)
.++++.+.. .++|+|+=++|-. .+ ++++.+|.++++++.++..-|++. |.+. . ..+ .+.-+++.++-.-
T Consensus 48 ~s~~~~~~~~~~~dvIi~~vp~~-~~---~~v~~~l~~~l~~g~ivid~st~~--~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 48 ANLRELSQRLSAPRVVWVMVPHG-IV---DAVLEELAPTLEKGDIVIDGGNSY--YKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred CCHHHHHhhcCCCCEEEEEcCch-HH---HHHHHHHHhhCCCCCEEEECCCCC--cccHHHHHHHHHhcCCeEEecCCCC
Confidence 455555432 2355999999997 44 577788988887766555443333 2222 1 111 2334566655442
Q ss_pred CCC--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCc---EEEEEec-cCch----hHHHHHH---HHHHHHHHHHHc-C--
Q psy9059 133 PVD--KMQLLEIITTEQTSQDTAASAVAVGLKQGK---VVITVKD-GPGF----YTTRILS---TMLSEAMRILQE-G-- 196 (269)
Q Consensus 133 P~~--~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk---~pv~vkd-~pGf----I~nRll~---al~~EA~~lv~e-G-- 196 (269)
.+. ...+.=.+.| +++.++++..+++.++. ..+++.+ ..|. +-|-+.. ..+.|++.+++. |
T Consensus 122 g~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ 198 (298)
T TIGR00872 122 GVWGRERGYCFMIGG---DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFD 198 (298)
T ss_pred CHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 221 0112223333 68899999999999886 3455643 2222 2333333 456789999876 5
Q ss_pred CCHHHHHHHHH-hc
Q psy9059 197 TSPKDLDRLTK-QF 209 (269)
Q Consensus 197 is~edID~a~~-g~ 209 (269)
++++++=.+|+ |.
T Consensus 199 ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 199 FDIPEVARVWRRGS 212 (298)
T ss_pred cCHHHHHHHHcCCc
Confidence 49999998897 64
No 76
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.38 E-value=1.3 Score=36.93 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=40.9
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
.++.+++++++++.++| +|+-++|=. .= ++++++|.++.+++.+|-+.+=|+
T Consensus 55 ~~i~~t~dl~~a~~~ad--~IiiavPs~--~~--~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 55 ENIKATTDLEEALEDAD--IIIIAVPSQ--AH--REVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp TTEEEESSHHHHHTT-S--EEEE-S-GG--GH--HHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccccccCHHHHhCccc--EEEecccHH--HH--HHHHHHHhhccCCCCEEEEecCCc
Confidence 37889999999998877 999999873 34 789999999999999999988776
No 77
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.55 E-value=4.9 Score=37.34 Aligned_cols=140 Identities=13% Similarity=0.052 Sum_probs=80.0
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc----cc-CCCCC--CCeE
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ----EQ-IPIQT--PHLI 125 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~----~~-~~~~~--p~R~ 125 (269)
++..+++++|++.++| +|+.++|.. .+ +++-+.+++++++.|.+.++. |.+ .+ ..+.. ..++
T Consensus 61 ~~~~~~~~~e~~~~aD--~Vi~~v~~~-------~~-~~v~~~l~~~~~vi~~~~Gi~-~~~~~~~~l~~~l~~~~~~~~ 129 (328)
T PRK14618 61 ELYPTADPEEALAGAD--FAVVAVPSK-------AL-RETLAGLPRALGYVSCAKGLA-PDGGRLSELARVLEFLTQARV 129 (328)
T ss_pred CeEEeCCHHHHHcCCC--EEEEECchH-------HH-HHHHHhcCcCCEEEEEeeccc-cCCCccchHHHHHHHhcCCCe
Confidence 4677889999987766 999999995 22 333344567777776666652 221 11 11110 1223
Q ss_pred EEeeccCCCCC----CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch-------------------------
Q psy9059 126 IGMHYFSPVDK----MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF------------------------- 176 (269)
Q Consensus 126 i~~HffnP~~~----~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf------------------------- 176 (269)
...---+.+.. .+..-++.+ .+++..+++..++...|..+....|.-|.
T Consensus 130 ~~~~gP~~a~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n 207 (328)
T PRK14618 130 AVLSGPNHAEEIARFLPAATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDN 207 (328)
T ss_pred EEEECccHHHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCcc
Confidence 22111111111 122333333 46888899999999988877654443331
Q ss_pred hHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Q psy9059 177 YTTRILSTMLSEAMRILQ-EGTSPKDLDRL 205 (269)
Q Consensus 177 I~nRll~al~~EA~~lv~-eGis~edID~a 205 (269)
....+..+.++|++.+.+ .|++++.+-..
T Consensus 208 ~~~~~~~~~~~E~~~la~~~G~~~~~~~~~ 237 (328)
T PRK14618 208 AKAALITRGLREMVRFGVALGAEEATFYGL 237 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccchhcC
Confidence 123456777788887765 68766665444
No 78
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=85.35 E-value=3.2 Score=39.52 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=68.8
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEe-cCCCCCcccccc--c-CC---CCCC-CeE
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMG-SNGLAMVFPLQE--Q-IP---IQTP-HLI 125 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iia-SnTS~l~~p~~~--~-~~---~~~p-~R~ 125 (269)
.+.++|..|+++++| +|+=++|..-..+ +++..+.+++++++++. ++|++ |... + +. ++|. -.+
T Consensus 69 A~~AaS~aEAAa~AD--VVIL~LPd~aaV~---eVl~GLaa~L~~GaIVID~STIs---P~t~~~~~e~~l~~~r~d~~v 140 (341)
T TIGR01724 69 VKVVSDDKEAAKHGE--IHVLFTPFGKGTF---SIARTIIEHVPENAVICNTCTVS---PVVLYYSLEKILRLKRTDVGI 140 (341)
T ss_pred CeecCCHHHHHhCCC--EEEEecCCHHHHH---HHHHHHHhcCCCCCEEEECCCCC---HHHHHHHHHHHhhcCccccCe
Confidence 466789999998877 9999999644443 56677888888877664 44433 3333 1 33 3322 245
Q ss_pred EEeeccCCCC-CCcEEEEeCC------CCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 126 IGMHYFSPVD-KMQLLEIITT------EQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 126 i~~HffnP~~-~~~lVEiv~~------~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
..+||-.=|. -..-.-++.+ .-.++|.+++..+++++.|+.|.++
T Consensus 141 ~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 141 SSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred eccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 5556543221 1111122222 2347888999999999999999987
No 79
>PLN02712 arogenate dehydrogenase
Probab=83.71 E-value=6.6 Score=40.76 Aligned_cols=112 Identities=10% Similarity=-0.023 Sum_probs=68.0
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHH-hcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeecc
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIY-MYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYF 131 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~-~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hff 131 (269)
+.+..++.|.+.. +||+|+=|+|- +.= .+++.++. .+++++++|..-+|.=..+...+ .......++++.||.
T Consensus 95 v~~~~d~~e~~~~-~aDvViLavP~--~~~--~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPM 169 (667)
T PLN02712 95 VSFFLDPHDLCER-HPDVILLCTSI--IST--ENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPM 169 (667)
T ss_pred CEEeCCHHHHhhc-CCCEEEEcCCH--HHH--HHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCc
Confidence 4566788886532 24599999995 233 56777775 56788888776655321122222 222223379999995
Q ss_pred CCCC--------CCcEEE--EeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 132 SPVD--------KMQLLE--IITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 132 nP~~--------~~~lVE--iv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
.-+. ..-++| +++.+....+.++...++.+.+|..++.+
T Consensus 170 aG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~m 218 (667)
T PLN02712 170 FGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEM 218 (667)
T ss_pred CCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEe
Confidence 4443 111223 11233334566778889999999999988
No 80
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=83.60 E-value=5.1 Score=36.98 Aligned_cols=146 Identities=11% Similarity=0.095 Sum_probs=84.6
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHH--HHhcCCCCc-EEecCCCCCcccc-cc-c-CC-CCCCCeEE
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSER--IYMYTYSER-LMGSNGLAMVFPL-QE-Q-IP-IQTPHLII 126 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~--l~~~~~~~~-iiaSnTS~l~~p~-~~-~-~~-~~~p~R~i 126 (269)
.+.+.|..|+++.+| +|+=++|.+-.++ .-++.. +...+.++. ++-.+|.+ |. +. + .. ..+..+++
T Consensus 43 ~~~~~s~~~~~~~ad--vVi~~v~~~~~v~--~v~~~~~g~~~~~~~g~ivvd~sT~~---p~~~~~~~~~~~~~G~~~v 115 (292)
T PRK15059 43 AVSVETARQVTEASD--IIFIMVPDTPQVE--EVLFGENGCTKASLKGKTIVDMSSIS---PIETKRFARQVNELGGDYL 115 (292)
T ss_pred CeecCCHHHHHhcCC--EEEEeCCChHHHH--HHHcCCcchhccCCCCCEEEECCCCC---HHHHHHHHHHHHHcCCCEE
Confidence 355678889887766 9999999876666 544432 333444444 44455443 32 11 2 11 23334555
Q ss_pred EeeccCCC----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cch---hHHHHH----HHHHHHHHHHHH
Q psy9059 127 GMHYFSPV----DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PGF---YTTRIL----STMLSEAMRILQ 194 (269)
Q Consensus 127 ~~HffnP~----~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pGf---I~nRll----~al~~EA~~lv~ 194 (269)
- +|.... ..-.|.=++. .+++.++++..+++.+|+..+++.+. .|. ++|-++ ...+.||+.+.+
T Consensus 116 d-aPVsGg~~~a~~g~l~~~~g---G~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 116 D-APVSGGEIGAREGTLSIMVG---GDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred E-ecCCCCHHHHhcCcEEEEEc---CCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 454221 1112222233 36889999999999999998888542 222 223332 345788887764
Q ss_pred -cCCCHHHHHHHHH-hcC
Q psy9059 195 -EGTSPKDLDRLTK-QFG 210 (269)
Q Consensus 195 -eGis~edID~a~~-g~G 210 (269)
.|++++.+=.++. +.|
T Consensus 192 ~~Gld~~~~~~~l~~~~~ 209 (292)
T PRK15059 192 KAGADPVRVRQALMGGFA 209 (292)
T ss_pred HcCCCHHHHHHHHHcCcc
Confidence 7888877545554 544
No 81
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=83.23 E-value=23 Score=36.70 Aligned_cols=85 Identities=9% Similarity=0.014 Sum_probs=62.1
Q ss_pred hHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC-CCCeEEEeeccCCCC------------CCcEEEEeCCCCCCHH
Q psy9059 86 QQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ-TPHLIIGMHYFSPVD------------KMQLLEIITTEQTSQD 151 (269)
Q Consensus 86 ~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~-~p~R~i~~HffnP~~------------~~~lVEiv~~~~Ts~e 151 (269)
.+++.++.++.++++++.==+|.=.-++..+ ..+. .+.+|++.||..-.. .-..+=+++.+.++++
T Consensus 11 ~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~il~p~~~~~~~ 90 (673)
T PRK11861 11 GPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNVVLCALPENAPD 90 (673)
T ss_pred HHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeEEEecCCCCCHH
Confidence 4688899999999999986666421022333 2232 236899999964432 2345668889999999
Q ss_pred HHHHHHHHHHhCCcEEEEE
Q psy9059 152 TAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 152 ~~~~~~~~~~~lGk~pv~v 170 (269)
.++.+.++.+.+|..++.+
T Consensus 91 ~~~~~~~l~~~~Ga~~~~~ 109 (673)
T PRK11861 91 ALARVEAMWRAARADVRAM 109 (673)
T ss_pred HHHHHHHHHHHcCCEEEEC
Confidence 9999999999999999988
No 82
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.32 E-value=1.3 Score=38.85 Aligned_cols=42 Identities=2% Similarity=0.010 Sum_probs=35.7
Q ss_pred cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEec
Q psy9059 58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGS 104 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaS 104 (269)
.++.+.+.++| +|+|| .|+.+.| +.+++++.+..+...++++
T Consensus 102 ~~~~~~~~~~D--lVi~a-~Dn~~~k--~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 102 ENIDKFFKDAD--IVCEA-FDNAEAK--AMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred hHHHHHhcCCC--EEEEC-CCCHHHH--HHHHHHHHHHcCCCcEEEE
Confidence 45677787666 99999 7999999 9999999999988887874
No 83
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=81.41 E-value=30 Score=34.42 Aligned_cols=147 Identities=7% Similarity=0.085 Sum_probs=85.9
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecC--C---------CcCCCchhHHHHHHHhcCCCCcEEe-cCCCCCccccccc---
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQ--E---------QIPIQTPQQMSERIYMYTYSERLMG-SNGLAMVFPLQEQ--- 116 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vp--E---------~l~~K~k~~l~~~l~~~~~~~~iia-SnTS~l~~p~~~~--- 116 (269)
++++|++++++++.++| .|+=||| - ..|+.-=.+..++|.++++++.++. .||---. ....+
T Consensus 64 ~~l~~t~~~~~~i~~ad--vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G-tt~~~~~~ 140 (473)
T PLN02353 64 KNLFFSTDVEKHVAEAD--IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK-TAEAIEKI 140 (473)
T ss_pred CCEEEEcCHHHHHhcCC--EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC-hHHHHHHH
Confidence 46999999999998877 8989985 2 2233322467778888888776654 4332110 11111
Q ss_pred -CC---------CCCCCeEEEe----eccCCCCCCcEEEEeCCC--CCCHHHHHHHHHHHHhCCc-EEEEEec-----cC
Q psy9059 117 -IP---------IQTPHLIIGM----HYFSPVDKMQLLEIITTE--QTSQDTAASAVAVGLKQGK-VVITVKD-----GP 174 (269)
Q Consensus 117 -~~---------~~~p~R~i~~----HffnP~~~~~lVEiv~~~--~Ts~e~~~~~~~~~~~lGk-~pv~vkd-----~p 174 (269)
.. .-.|||+.-- .+.||+.. |+.+. .++++..+++.++++.+-+ .++.+.+ --
T Consensus 141 l~~~~~g~~f~v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~ 215 (473)
T PLN02353 141 LTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELS 215 (473)
T ss_pred HHhhCCCCCeEEEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHH
Confidence 11 1234443322 23344431 23543 2236688899999988643 4555422 11
Q ss_pred chhHHHH---HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059 175 GFYTTRI---LSTMLSEAMRILQ-EGTSPKDLDRLT 206 (269)
Q Consensus 175 GfI~nRl---l~al~~EA~~lv~-eGis~edID~a~ 206 (269)
-+..|-. -.+++||-..+.+ -|+++.+|-.++
T Consensus 216 K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 216 KLAANAFLAQRISSVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 2333433 3588899887776 588888887776
No 84
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=81.12 E-value=44 Score=30.57 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=82.1
Q ss_pred CcccchHHHHhhhhhhcccccCCCCCCCcCeEE----------ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHH
Q psy9059 24 SEWLDLQETCQRTVYALCTTVPLVSTSHTGITY----------LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIY 93 (269)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~ 93 (269)
+.--.+.+|.+.-+- .+|-|+ +|.|.| +++-.|||.||| +|+-=.|- -+.+ -.++.++.
T Consensus 93 ~impkire~vn~~ak----elpkpp--kgaihf~hped~g~~vttddreavedad--~iitwlpk-g~~q--pdiikkfi 161 (343)
T COG4074 93 DIMPKIREYVNDIAK----ELPKPP--KGAIHFLHPEDMGIVVTTDDREAVEDAD--MIITWLPK-GGVQ--PDIIKKFI 161 (343)
T ss_pred HhhHHHHHHHHHHHH----hCCCCC--cceeeecCHHHceeEEecCcHhhhcCCC--eEEEeccC-CCCC--ccHHHHHH
Confidence 444455667666543 446666 666555 478899998877 88877775 3556 78899988
Q ss_pred hcCCCCcEEecCCCCCccccccc----CCCCC-CCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q psy9059 94 MYTYSERLMGSNGLAMVFPLQEQ----IPIQT-PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQ 163 (269)
Q Consensus 94 ~~~~~~~iiaSnTS~l~~p~~~~----~~~~~-p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~l 163 (269)
.-.|+.+|++ ++-++ |.+.. +...+ --++-..||-.-|..---|-|..| ..|+++++.+.++.++.
T Consensus 162 ddipegaivt-hacti--pttkf~kifed~gredlnvtsyhpg~vpemkgqvyiaeg-yaseeavn~lyelg~ka 232 (343)
T COG4074 162 DDIPEGAIVT-HACTI--PTTKFKKIFEDMGREDLNVTSYHPGTVPEMKGQVYIAEG-YASEEAVNALYELGEKA 232 (343)
T ss_pred hcCCCCceEe-eeccc--chHHHHHHHHHhCccccceeccCCCCCccccCcEEEecc-cccHHHHHHHHHHHHHh
Confidence 8899999875 45555 76653 23333 124555566554444444555555 46889999998888764
No 85
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=79.75 E-value=3.2 Score=39.54 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=47.2
Q ss_pred ccccCCCCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 41 CTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
+..+.+|+ ++++++++++++.++| +|+=+||- ..= +++.++|..+.+++.++.|-|-|+
T Consensus 61 lpgi~Lp~----~i~at~dl~eal~~AD--iIIlAVPs--~~i--~~vl~~l~~~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 61 LPGIKLPA----NLVAVPDLVEAAKGAD--ILVFVIPH--QFL--EGICKQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred cCCCcCCC----CeEEECCHHHHHhcCC--EEEEECCh--HHH--HHHHHHHHhhcCCCCEEEEEeCCc
Confidence 33455554 7889999999998877 99999997 333 567889998899999998888777
No 86
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.37 E-value=22 Score=34.87 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=84.0
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCc------CCCchhHHHHHHHhcCCCC-cEEecCCCCCcccccc---c----
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQI------PIQTPQQMSERIYMYTYSE-RLMGSNGLAMVFPLQE---Q---- 116 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l------~~K~k~~l~~~l~~~~~~~-~iiaSnTS~l~~p~~~---~---- 116 (269)
.|||+|++++++|+.++| +++=||+=.. |++.=..+.++|.++.+.. +|+.=|| . |+-- .
T Consensus 61 ~gRl~fTtd~~~a~~~ad--v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST--V--PvGt~~~v~~~i 134 (414)
T COG1004 61 SGRLRFTTDYEEAVKDAD--VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST--V--PVGTTEEVRAKI 134 (414)
T ss_pred cCcEEEEcCHHHHHhcCC--EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC--C--CCCchHHHHHHH
Confidence 689999999999998877 9999995433 3333356778888888874 4444444 3 3221 1
Q ss_pred -CCC--------CCC----CeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhC--CcEEEEEeccC-----ch
Q psy9059 117 -IPI--------QTP----HLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQ--GKVVITVKDGP-----GF 176 (269)
Q Consensus 117 -~~~--------~~p----~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~l--Gk~pv~vkd~p-----Gf 176 (269)
+.. .+| |=..+-.|++|.+ ||-|.. |+.+.+...++++.. ...|+.+.+.. -+
T Consensus 135 ~~~~~~~~f~v~~NPEFLREG~Av~D~~~PdR------IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKy 207 (414)
T COG1004 135 REENSGKDFEVASNPEFLREGSAVYDFLYPDR------IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKY 207 (414)
T ss_pred HhhcccCCceEecChHHhcCcchhhhccCCCe------EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHH
Confidence 111 122 1223335566665 344433 333566666666553 56677764322 23
Q ss_pred hHHHHHH---HHHHHHHHHHH-cCCCHHHHHHH
Q psy9059 177 YTTRILS---TMLSEAMRILQ-EGTSPKDLDRL 205 (269)
Q Consensus 177 I~nRll~---al~~EA~~lv~-eGis~edID~a 205 (269)
-+|-.|+ .++||-..+.+ -|++.++|=.+
T Consensus 208 aaNafLAtKIsFiNEia~ice~~g~D~~~V~~g 240 (414)
T COG1004 208 AANAFLATKISFINEIANICEKVGADVKQVAEG 240 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455543 57899888876 46677776544
No 87
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.73 E-value=21 Score=33.60 Aligned_cols=123 Identities=10% Similarity=-0.062 Sum_probs=71.7
Q ss_pred cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccc----ccc-cC-CCCCCCeE
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFP----LQE-QI-PIQTPHLI 125 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p----~~~-~~-~~~~p~R~ 125 (269)
.++++.+++++++.++| +|+=+||= ..= ++++++|..+.++++++-|-+-|+... +++ +. .+. ..++
T Consensus 63 ~~i~~t~d~~~a~~~aD--lVilavps--~~~--~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~-~~~~ 135 (341)
T PRK12439 63 DTLRATTDFAEAANCAD--VVVMGVPS--HGF--RGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLP-GHPA 135 (341)
T ss_pred CCeEEECCHHHHHhcCC--EEEEEeCH--HHH--HHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcC-CCCe
Confidence 46788999999998777 99999983 223 678899999999997666666566211 122 21 222 1232
Q ss_pred EEeeccCCCC------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHH
Q psy9059 126 IGMHYFSPVD------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTM 185 (269)
Q Consensus 126 i~~HffnP~~------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al 185 (269)
..+ ..|-. -.|. +++-+. .+++..+.+.+++..-+..+....|.-|...--.+...
T Consensus 136 ~~l--~GP~~a~ev~~g~~t-~~via~-~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv 197 (341)
T PRK12439 136 GIL--AGPNIAREVAEGYAA-AAVLAM-PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNV 197 (341)
T ss_pred EEE--ECCCHHHHHHcCCCe-EEEEEe-CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHH
Confidence 221 12211 1121 222222 26777778888887777666666776665444443333
No 88
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=77.13 E-value=24 Score=33.22 Aligned_cols=101 Identities=10% Similarity=0.016 Sum_probs=65.5
Q ss_pred cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccCCCCC
Q psy9059 58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFSPVDK 136 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~HffnP~~~ 136 (269)
.+..|++..+| +|+=++|..- .. ..+.++|....+++.+ -|-..++ ++.... ......+++-+=|=.|...
T Consensus 51 ~s~~ea~~~AD--iVvLaVpp~~-~~--~~v~~ei~~~l~~g~i-Vs~aaG~--~i~~~~~~~~~~~~VvrvmPn~p~~~ 122 (314)
T TIGR00465 51 GTVEEAIPQAD--LIMNLLPDEV-QH--EVYEAEIQPLLKEGKT-LGFSHGF--NIHFVQIVPPKDVDVVMVAPKGPGTL 122 (314)
T ss_pred CCHHHHHhcCC--EEEEeCCcHh-HH--HHHHHHHHhhCCCCcE-EEEeCCc--cHhhccccCCCCCcEEEECCCCCcHH
Confidence 36888987766 9999998532 24 5667778888888864 4555566 455542 2222235666666556553
Q ss_pred C--------cEEEEe-CCCCCCHHHHHHHHHHHHhCCcE
Q psy9059 137 M--------QLLEII-TTEQTSQDTAASAVAVGLKQGKV 166 (269)
Q Consensus 137 ~--------~lVEiv-~~~~Ts~e~~~~~~~~~~~lGk~ 166 (269)
+ -.-=++ .+...+.+..+.+.+++..+|..
T Consensus 123 vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 123 VREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred HHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 1 111232 45556788889999999999988
No 89
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=75.41 E-value=14 Score=34.46 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=68.4
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecC-CCCCcccccc---cC-CCCCCCeE
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSN-GLAMVFPLQE---QI-PIQTPHLI 125 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSn-TS~l~~p~~~---~~-~~~~p~R~ 125 (269)
..+.+..++-.||++++. ..+==-|= -... -++-++|..+++++++|+.. |++ |+.. ++ .++.+.+=
T Consensus 67 dAGV~vv~dD~eaa~~~E--i~VLFTPF-Gk~T--~~Iarei~~hvpEgAVicnTCT~s---p~vLy~~LE~~Lr~kR~d 138 (340)
T COG4007 67 DAGVEVVSDDAEAAEHGE--IHVLFTPF-GKAT--FGIAREILEHVPEGAVICNTCTVS---PVVLYYSLEGELRTKRED 138 (340)
T ss_pred hcCcEEecCchhhhhcce--EEEEeccc-chhh--HHHHHHHHhhCcCCcEecccccCc---hhHHHHHhhhhhcCchhh
Confidence 355677777777777765 22222221 1123 56889999999999999954 443 4333 22 45555555
Q ss_pred EEeeccCCCCC----CcEEEEeCCCC------CCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 126 IGMHYFSPVDK----MQLLEIITTEQ------TSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 126 i~~HffnP~~~----~~lVEiv~~~~------Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
+|+-.+.|.-. ..=.-++.|.. .+++-+++..+++++.||.++++
T Consensus 139 VGvssmHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~ 193 (340)
T COG4007 139 VGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL 193 (340)
T ss_pred cCccccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec
Confidence 55555544321 11122333333 35677889999999999999987
No 90
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=75.37 E-value=4.2 Score=38.71 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=49.3
Q ss_pred hcccccCCCCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 39 ALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
.+|..+.+|+ +|..++|++++++++| +|+-+||= ..= +++.+++..+.++++++.+-|=|+
T Consensus 48 ~yLp~i~lp~----~l~at~Dl~~a~~~ad--~iv~avPs--~~~--r~v~~~l~~~l~~~~~iv~~sKGi 108 (329)
T COG0240 48 KYLPGILLPP----NLKATTDLAEALDGAD--IIVIAVPS--QAL--REVLRQLKPLLLKDAIIVSATKGL 108 (329)
T ss_pred cccCCccCCc----ccccccCHHHHHhcCC--EEEEECCh--HHH--HHHHHHHhhhccCCCeEEEEeccc
Confidence 3444667765 7899999999998877 99999997 333 677888877889999999988776
No 91
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=74.40 E-value=15 Score=36.83 Aligned_cols=144 Identities=14% Similarity=0.146 Sum_probs=87.2
Q ss_pred eEEecCHHHHhcCC-CCceEEeecCCCcCCCchhHHHHHHHhcC-CCCcEEecCCCCCcccccc-c-CCC-CCCCeEEEe
Q psy9059 54 ITYLYTYSERLMGS-NGLAMVFPLQEQIPIQTPQQMSERIYMYT-YSERLMGSNGLAMVFPLQE-Q-IPI-QTPHLIIGM 128 (269)
Q Consensus 54 l~~~~~~~~a~~~~-~~~~V~E~vpE~l~~K~k~~l~~~l~~~~-~~~~iiaSnTS~l~~p~~~-~-~~~-~~p~R~i~~ 128 (269)
+..+.|++|+++.. .+|.|+=+||..-.++ +++..|-+.+ +.+.||-.+||.. ..+. . +.+ .+.-+++.+
T Consensus 57 ~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~---~Vi~gl~~~l~~G~iiID~sT~~~--~~t~~~~~~l~~~Gi~flda 131 (493)
T PLN02350 57 LYGFKDPEDFVLSIQKPRSVIILVKAGAPVD---QTIKALSEYMEPGDCIIDGGNEWY--ENTERRIKEAAEKGLLYLGM 131 (493)
T ss_pred cccCCCHHHHHhcCCCCCEEEEECCCcHHHH---HHHHHHHhhcCCCCEEEECCCCCH--HHHHHHHHHHHHcCCeEEeC
Confidence 45678999998751 2449999999987776 4556666666 5666676777764 2222 2 221 222333333
Q ss_pred eccC---CCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcE------EEEEec-cCch----hHHHHH---HHHHHHHHH
Q psy9059 129 HYFS---PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKV------VITVKD-GPGF----YTTRIL---STMLSEAMR 191 (269)
Q Consensus 129 Hffn---P~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~------pv~vkd-~pGf----I~nRll---~al~~EA~~ 191 (269)
=-.- .+..-+. ++.| -++++++++..+++.++.. ...+.+ ..|. +-|-+. ...+.||+.
T Consensus 132 pVSGG~~gA~~G~~--im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~ 207 (493)
T PLN02350 132 GVSGGEEGARNGPS--LMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYD 207 (493)
T ss_pred CCcCCHHHhcCCCe--EEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1122332 4544 3788999999999998854 555643 2222 233333 455679998
Q ss_pred HHHc--CCCHHHHHHHH
Q psy9059 192 ILQE--GTSPKDLDRLT 206 (269)
Q Consensus 192 lv~e--Gis~edID~a~ 206 (269)
+.+. |++++++-.++
T Consensus 208 l~~~~~Gld~~~l~~vf 224 (493)
T PLN02350 208 VLKSVGGLSNEELAEVF 224 (493)
T ss_pred HHHhhCCCCHHHHHHHH
Confidence 8875 78999888773
No 92
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.18 E-value=16 Score=33.67 Aligned_cols=142 Identities=4% Similarity=-0.057 Sum_probs=83.4
Q ss_pred eEEecCHHHHhcCC-CCceEEeecCCCcCCCchhHHHHHHHhcCCCCc-EEecCCCCCcccccc-c-CCC-CCCCeEEEe
Q psy9059 54 ITYLYTYSERLMGS-NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSER-LMGSNGLAMVFPLQE-Q-IPI-QTPHLIIGM 128 (269)
Q Consensus 54 l~~~~~~~~a~~~~-~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~-iiaSnTS~l~~p~~~-~-~~~-~~p~R~i~~ 128 (269)
.+.++|.+|.+..+ ++|+|+=++|-.-.++ +++..+...++++. +|-.+|++. ..+. + ..+ .+.-+++-
T Consensus 44 ~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~---~v~~~l~~~l~~g~ivid~st~~~--~~~~~~~~~~~~~g~~~~d- 117 (301)
T PRK09599 44 ATGADSLEELVAKLPAPRVVWLMVPAGEITD---ATIDELAPLLSPGDIVIDGGNSYY--KDDIRRAELLAEKGIHFVD- 117 (301)
T ss_pred CeecCCHHHHHhhcCCCCEEEEEecCCcHHH---HHHHHHHhhCCCCCEEEeCCCCCh--hHHHHHHHHHHHcCCEEEe-
Confidence 45677898888765 2569999998754443 56677777766555 444444432 2222 2 111 22223321
Q ss_pred eccCCCCC------CcEEEEeCCCCCCHHHHHHHHHHHHhCCc----EEEEEecc-Cch---hHHH-HHH---HHHHHHH
Q psy9059 129 HYFSPVDK------MQLLEIITTEQTSQDTAASAVAVGLKQGK----VVITVKDG-PGF---YTTR-ILS---TMLSEAM 190 (269)
Q Consensus 129 HffnP~~~------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk----~pv~vkd~-pGf---I~nR-ll~---al~~EA~ 190 (269)
-|+.- -.+. ++.| .++++++++..+++.+++ ..+.+.+. .|. ++|. +.. ..+.||+
T Consensus 118 ---apvsG~~~~a~~g~~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~ 191 (301)
T PRK09599 118 ---VGTSGGVWGLERGYC-LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGF 191 (301)
T ss_pred ---CCCCcCHHHHhcCCe-EEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1122 3333 578999999999999998 56666442 222 2232 322 2467899
Q ss_pred HHHH---cCCCHHHHHHHHH
Q psy9059 191 RILQ---EGTSPKDLDRLTK 207 (269)
Q Consensus 191 ~lv~---eGis~edID~a~~ 207 (269)
.+.+ .|++++++=.+|+
T Consensus 192 ~l~~~~~~gld~~~~~~~~~ 211 (301)
T PRK09599 192 ELLEASRFDLDLAAVAEVWR 211 (301)
T ss_pred HHHHHcCCCCCHHHHHHHHh
Confidence 8886 5679999988887
No 93
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=71.59 E-value=18 Score=35.97 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=85.4
Q ss_pred eEEecCHHHHhcCC-CCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEe-cCCCCCcccccc-c-CCC-CCCCeEEEe
Q psy9059 54 ITYLYTYSERLMGS-NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMG-SNGLAMVFPLQE-Q-IPI-QTPHLIIGM 128 (269)
Q Consensus 54 l~~~~~~~~a~~~~-~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iia-SnTS~l~~p~~~-~-~~~-~~p~R~i~~ 128 (269)
++.++|++|+++.. +++.|+=+|+-.-.++ +++.+|.++++++.||- .+||.. .-+. . ..+ .+ +.
T Consensus 51 i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~---~vi~~l~~~L~~g~iIID~gn~~~--~dt~~r~~~l~~~-----Gi 120 (470)
T PTZ00142 51 VKGYHTLEELVNSLKKPRKVILLIKAGEAVD---ETIDNLLPLLEKGDIIIDGGNEWY--LNTERRIKRCEEK-----GI 120 (470)
T ss_pred ceecCCHHHHHhcCCCCCEEEEEeCChHHHH---HHHHHHHhhCCCCCEEEECCCCCH--HHHHHHHHHHHHc-----CC
Confidence 55678999999753 3568999988765555 56688888777666555 444433 2222 1 111 22 44
Q ss_pred eccC-CCC-------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcE------EEEEe-ccCch----hHHHHH---HHHH
Q psy9059 129 HYFS-PVD-------KMQLLEIITTEQTSQDTAASAVAVGLKQGKV------VITVK-DGPGF----YTTRIL---STML 186 (269)
Q Consensus 129 Hffn-P~~-------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~------pv~vk-d~pGf----I~nRll---~al~ 186 (269)
||.- |+. .-+ . ++.| -++++++++..+++.++.. ...+. ...|+ |-|-+. ...+
T Consensus 121 ~fldapVSGG~~gA~~G~-~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~i 196 (470)
T PTZ00142 121 LYLGMGVSGGEEGARYGP-S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLI 196 (470)
T ss_pred eEEcCCCCCCHHHHhcCC-E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHH
Confidence 5431 221 122 2 5554 3688999999999998876 34453 33333 233333 3567
Q ss_pred HHHHHHHH--cCCCHHHHHHHH
Q psy9059 187 SEAMRILQ--EGTSPKDLDRLT 206 (269)
Q Consensus 187 ~EA~~lv~--eGis~edID~a~ 206 (269)
.||+.+++ .|++++++=.++
T Consensus 197 aEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 197 SESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred HHHHHHHHhhcCCCHHHHHHHH
Confidence 89999986 677888887666
No 94
>PRK06444 prephenate dehydrogenase; Provisional
Probab=71.03 E-value=23 Score=31.09 Aligned_cols=84 Identities=10% Similarity=0.122 Sum_probs=50.3
Q ss_pred CCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeecc-CCCCCC----cEEEE
Q psy9059 68 NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYF-SPVDKM----QLLEI 142 (269)
Q Consensus 68 ~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~Hff-nP~~~~----~lVEi 142 (269)
+||+|+=|+|. ..+.+-|.++.+ +|. -.+|..-++. ....++++.||. -|-.-. ..+ +
T Consensus 31 ~~DlVilavPv-------~~~~~~i~~~~~---~v~-Dv~SvK~~i~-----~~~~~~vg~HPMfGp~~a~~~lf~~~-i 93 (197)
T PRK06444 31 KADHAFLSVPI-------DAALNYIESYDN---NFV-EISSVKWPFK-----KYSGKIVSIHPLFGPMSYNDGVHRTV-I 93 (197)
T ss_pred CCCEEEEeCCH-------HHHHHHHHHhCC---eEE-eccccCHHHH-----HhcCCEEecCCCCCCCcCcccccceE-E
Confidence 45599999999 444444544432 333 3222211221 123489999994 332221 222 2
Q ss_pred eCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 143 ITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 143 v~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
+..+.++++.++.+.++.+ |..++.+
T Consensus 94 v~~~~~~~~~~~~~~~l~~--G~~~~~~ 119 (197)
T PRK06444 94 FINDISRDNYLNEINEMFR--GYHFVEM 119 (197)
T ss_pred EECCCCCHHHHHHHHHHHc--CCEEEEe
Confidence 2367889999999999987 7888776
No 95
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.47 E-value=6.8 Score=37.70 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=46.7
Q ss_pred hcccccCCCCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHh--cCCCCcEEecCCCCC
Q psy9059 39 ALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYM--YTYSERLMGSNGLAM 109 (269)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~--~~~~~~iiaSnTS~l 109 (269)
..+.++.+|+ ++..++++.++++++| +|+=+||=.- = ++++++|.. +.++++++-|-+=|+
T Consensus 70 ~ylp~~~Lp~----ni~~tsdl~eav~~aD--iIvlAVPsq~--l--~~vl~~l~~~~~l~~~~~iIS~aKGI 132 (365)
T PTZ00345 70 KYLPGIKLPD----NIVAVSDLKEAVEDAD--LLIFVIPHQF--L--ESVLSQIKENNNLKKHARAISLTKGI 132 (365)
T ss_pred ccCCCCcCCC----ceEEecCHHHHHhcCC--EEEEEcChHH--H--HHHHHHhccccccCCCCEEEEEeCCc
Confidence 3556677766 7889999999998877 9999998632 2 567888887 777787777766665
No 96
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=67.43 E-value=35 Score=33.17 Aligned_cols=144 Identities=12% Similarity=0.016 Sum_probs=79.6
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCc------CCCchhHHHHHHHhcCCCCcEEe-cCCCCCccccccc-C-----
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQI------PIQTPQQMSERIYMYTYSERLMG-SNGLAMVFPLQEQ-I----- 117 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l------~~K~k~~l~~~l~~~~~~~~iia-SnTS~l~~p~~~~-~----- 117 (269)
.|++++.++++ +||+|+=|+|-.. ++..=.+..+.|.+++++++++- .||.... .+.++ .
T Consensus 64 ~g~l~~~~~~~------~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg-tt~~~~~~l~~~ 136 (415)
T PRK11064 64 GGYLRATTTPE------PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG-ATEQMAEWLAEA 136 (415)
T ss_pred cCceeeecccc------cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC-HHHHHHHHHHHh
Confidence 57777776432 3559999998642 33311345678888888877653 3333220 11111 0
Q ss_pred CCC--CC------CeEEEeeccCCCCCCc--EE-------EEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc-----
Q psy9059 118 PIQ--TP------HLIIGMHYFSPVDKMQ--LL-------EIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG----- 175 (269)
Q Consensus 118 ~~~--~p------~R~i~~HffnP~~~~~--lV-------Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG----- 175 (269)
... .| ..|-.+ ++|-.+.+ .+ =++.| .+++..+++..+++.+++..+.+.+ ++
T Consensus 137 ~~~~~~~~~~g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~-~~~Ae~~ 211 (415)
T PRK11064 137 RPDLTFPQQAGEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTN-SRTAEMC 211 (415)
T ss_pred ccCCcccccccCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCC-HHHHHHH
Confidence 000 01 112122 34422110 11 13444 3789999999999999877666543 22
Q ss_pred -hhHHHH---HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059 176 -FYTTRI---LSTMLSEAMRILQ-EGTSPKDLDRLT 206 (269)
Q Consensus 176 -fI~nRl---l~al~~EA~~lv~-eGis~edID~a~ 206 (269)
.+.|-+ ..+++||+..+.+ .|+++.++=+++
T Consensus 212 Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 212 KLTENSFRDVNIAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 233333 3577899988876 688888775444
No 97
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=65.44 E-value=26 Score=34.74 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=89.4
Q ss_pred CeEEecCHHHHhcCCC-CceEEeecCCCcCCCchhHHHHHHHhcCC-CCcEEecCCCCCcccccc-c-CCC-CCCCeEEE
Q psy9059 53 GITYLYTYSERLMGSN-GLAMVFPLQEQIPIQTPQQMSERIYMYTY-SERLMGSNGLAMVFPLQE-Q-IPI-QTPHLIIG 127 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~-~~~V~E~vpE~l~~K~k~~l~~~l~~~~~-~~~iiaSnTS~l~~p~~~-~-~~~-~~p~R~i~ 127 (269)
+++-+.|++|+++..+ ++.|+=+||..-.++ +++..|.+.+. .|.||=.+||.+ +-+. . +.+ ...-+++.
T Consensus 38 g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~---~Vi~~l~~~l~~GdiiID~gn~~~--~~t~~~~~~l~~~Gi~fvd 112 (459)
T PRK09287 38 KIVPAYTLEEFVASLEKPRKILLMVKAGAPVD---AVIEQLLPLLEKGDIIIDGGNSNY--KDTIRREKELAEKGIHFIG 112 (459)
T ss_pred CeEeeCCHHHHHhhCCCCCEEEEECCCchHHH---HHHHHHHhcCCCCCEEEECCCCCH--HHHHHHHHHHHhcCCeEEe
Confidence 4788899999998742 569999999986666 56677777765 556666667665 3222 1 222 12223333
Q ss_pred eeccCCC---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEE-------EEEec-cCch----hHHHHH---HHHHHHH
Q psy9059 128 MHYFSPV---DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVV-------ITVKD-GPGF----YTTRIL---STMLSEA 189 (269)
Q Consensus 128 ~HffnP~---~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~p-------v~vkd-~pGf----I~nRll---~al~~EA 189 (269)
+=-.--+ ..-+ =++.| -++++++++..+++.++... ..+.+ ..|+ |-|-+. ...+.||
T Consensus 113 apVSGG~~gA~~G~--siM~G--G~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa 188 (459)
T PRK09287 113 MGVSGGEEGALHGP--SIMPG--GQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEA 188 (459)
T ss_pred cCCCCCHHHHhcCC--EEEEe--CCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221111 1122 24443 36899999999999988765 56633 3333 334343 4456799
Q ss_pred HHHHHc--CCCHHHHHHHH
Q psy9059 190 MRILQE--GTSPKDLDRLT 206 (269)
Q Consensus 190 ~~lv~e--Gis~edID~a~ 206 (269)
+.+++. |++++++=.++
T Consensus 189 ~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 189 YDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHHHHHhcCCCHHHHHHHH
Confidence 989884 78888876666
No 98
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=64.03 E-value=1.1e+02 Score=27.46 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=81.0
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCC---eEEEee
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPH---LIIGMH 129 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~---R~i~~H 129 (269)
...+.+..+++.++| +|+=|++= ..= .+++.+|..+.+++ +|-|-..|. ..+.+. ...... |++..|
T Consensus 45 ~~~~~~~~~~~~~~D--~Vilavkp--~~~--~~vl~~i~~~l~~~-~iIS~~aGi--~~~~l~~~~~~~~~vvr~mPn~ 115 (260)
T PTZ00431 45 FVYLQSNEELAKTCD--IIVLAVKP--DLA--GKVLLEIKPYLGSK-LLISICGGL--NLKTLEEMVGVEAKIVRVMPNT 115 (260)
T ss_pred eEEeCChHHHHHhCC--EEEEEeCH--HHH--HHHHHHHHhhccCC-EEEEEeCCc--cHHHHHHHcCCCCeEEEECCCc
Confidence 345678888887666 99999864 222 56777887766665 445666666 344432 222222 344444
Q ss_pred ccCCCCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec------------cCchhHHHHHHHHHHHHHHHHHcC
Q psy9059 130 YFSPVDK-MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD------------GPGFYTTRILSTMLSEAMRILQEG 196 (269)
Q Consensus 130 ffnP~~~-~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd------------~pGfI~nRll~al~~EA~~lv~eG 196 (269)
+ ... ....=+.++..++++..+.+.+++..+|....+ +| .|+|+. .++.++.. +.+..|
T Consensus 116 p---~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v-~E~~~d~~ta~~gsgPA~~~-~~~~al~~---~~v~~G 187 (260)
T PTZ00431 116 P---SLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEI-KEKDMDIATAISGCGPAYVF-LFIESLID---AGVKNG 187 (260)
T ss_pred h---hHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEE-ChHHcchhhhhcCCHHHHHH-HHHHHHHH---HHHHcC
Confidence 3 221 234456677788999999999999999987654 22 366542 33334333 334568
Q ss_pred CCHHHHHHH
Q psy9059 197 TSPKDLDRL 205 (269)
Q Consensus 197 is~edID~a 205 (269)
++.++--+.
T Consensus 188 l~~~~a~~l 196 (260)
T PTZ00431 188 LNRDVSKNL 196 (260)
T ss_pred CCHHHHHHH
Confidence 866555544
No 99
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=60.00 E-value=9 Score=36.18 Aligned_cols=53 Identities=6% Similarity=0.074 Sum_probs=45.0
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
.+++..++.|+++++| +|+.++|...+.+ +-+-+++-+.++++++|-..+.|-
T Consensus 185 ~~~~~~~l~ell~~aD--iVil~lP~t~~t~--~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 185 FLTYKDSVKEAIKDAD--IISLHVPANKESY--HLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred hhhccCCHHHHHhcCC--EEEEeCCCcHHHH--HHHhHHHHhcCCCCcEEEEcCCcc
Confidence 3566779999998877 9999999988877 888889999999999888777765
No 100
>KOG2711|consensus
Probab=52.60 E-value=44 Score=32.21 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=46.7
Q ss_pred ccccCCCCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 41 CTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
+..+.+|. ++.-.+|+.||+.||| +++-.+|- ..= .+++.+|..++++++.--|=+=|+
T Consensus 84 lpg~~lP~----NvvAv~dl~ea~~dAD--ilvf~vPh--Qf~--~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 84 LPGIKLPE----NVVAVPDLVEAAKDAD--ILVFVVPH--QFI--PRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred cCCccCCC----CeEecchHHHHhccCC--EEEEeCCh--hhH--HHHHHHHhcccCCCCeEEEeecce
Confidence 33355665 5888999999998877 99999997 333 578999999999999887765555
No 101
>PLN02858 fructose-bisphosphate aldolase
Probab=52.49 E-value=88 Score=35.48 Aligned_cols=148 Identities=12% Similarity=0.025 Sum_probs=88.8
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCC-cEEecCCCCCcccccc-c-CCC-CCC--CeE
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSE-RLMGSNGLAMVFPLQE-Q-IPI-QTP--HLI 125 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~-~iiaSnTS~l~~p~~~-~-~~~-~~p--~R~ 125 (269)
-+.++|.+|+++++| .|+=|+|..-.++ .-++ ..+.+.+.++ ++|=.||.+- ..+. + +.+ .+. -++
T Consensus 48 a~~~~s~~e~a~~ad--vVi~~l~~~~~v~--~V~~g~~g~~~~l~~g~iivd~STi~p--~~~~~la~~l~~~g~~~~~ 121 (1378)
T PLN02858 48 GHRCDSPAEAAKDAA--ALVVVLSHPDQVD--DVFFGDEGAAKGLQKGAVILIRSTILP--LQLQKLEKKLTERKEQIFL 121 (1378)
T ss_pred CeecCCHHHHHhcCC--EEEEEcCChHHHH--HHHhchhhHHhcCCCcCEEEECCCCCH--HHHHHHHHHHHhcCCceEE
Confidence 367789999998776 9999999987666 5444 3455555554 4555655542 1222 2 222 222 122
Q ss_pred EEeeccC-C--CCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-ecc-Cch---hHHHHHH----HHHHHHHHHH
Q psy9059 126 IGMHYFS-P--VDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDG-PGF---YTTRILS----TMLSEAMRIL 193 (269)
Q Consensus 126 i~~Hffn-P--~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~-pGf---I~nRll~----al~~EA~~lv 193 (269)
+-+=-.- | +..-.|.=++.| ++++++++..+++.+|+..+++ .+. .|. ++|-++. ..+.||+.+.
T Consensus 122 lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 122 VDAYVSKGMSDLLNGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred EEccCcCCHHHHhcCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 1 122345545555 6788999999999999988765 432 221 3343332 4578898875
Q ss_pred H-cCCCHHHHHHHHH-hcC
Q psy9059 194 Q-EGTSPKDLDRLTK-QFG 210 (269)
Q Consensus 194 ~-eGis~edID~a~~-g~G 210 (269)
+ .|++++.+=.++. +.|
T Consensus 199 ~~~Gld~~~l~~vl~~s~g 217 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAG 217 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCc
Confidence 4 7889888877776 655
No 102
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=51.90 E-value=2.4e+02 Score=27.57 Aligned_cols=146 Identities=9% Similarity=-0.020 Sum_probs=78.0
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCC---chhHHH---HHHHhcCCCCc-EEecCCCCCcccccc-c-----C
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQ---TPQQMS---ERIYMYTYSER-LMGSNGLAMVFPLQE-Q-----I 117 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K---~k~~l~---~~l~~~~~~~~-iiaSnTS~l~~p~~~-~-----~ 117 (269)
.+++.++++.+ ++.++| .|+=|||-..+.. .=+.++ +.|.++++++. +|-.||..- -.++ . +
T Consensus 62 ~g~l~~t~~~~-~~~~ad--vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p--gtt~~~~~~~l~ 136 (425)
T PRK15182 62 ARYLKFTSEIE-KIKECN--FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP--GCTEEECVPILA 136 (425)
T ss_pred hCCeeEEeCHH-HHcCCC--EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC--cchHHHHHHHHH
Confidence 36788887775 576655 9999998753220 002344 46667776544 444555432 1221 1 1
Q ss_pred ---CCCCCCeEEEeeccCCCCCC-----cEEE----EeCCCCCCHHHHHHHHHHHHhCC-cEEEEEeccCc------hhH
Q psy9059 118 ---PIQTPHLIIGMHYFSPVDKM-----QLLE----IITTEQTSQDTAASAVAVGLKQG-KVVITVKDGPG------FYT 178 (269)
Q Consensus 118 ---~~~~p~R~i~~HffnP~~~~-----~lVE----iv~~~~Ts~e~~~~~~~~~~~lG-k~pv~vkd~pG------fI~ 178 (269)
+...-+.+...| ||-.+. .-.. ||.|. +++..+.+..+++.+. ..++++.+ ++ .+-
T Consensus 137 ~~~g~~~~~~~~~~~--~PE~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~~AE~~Kl~~ 211 (425)
T PRK15182 137 RMSGMTFNQDFYVGY--SPERINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAES-IKVAEAAKVIE 211 (425)
T ss_pred hccCCCcCCCeeEee--CCCcCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecC-HHHHHHHHHHH
Confidence 111112222222 222111 1111 45553 4778889999999875 34555432 22 222
Q ss_pred HHH---HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059 179 TRI---LSTMLSEAMRILQ-EGTSPKDLDRLT 206 (269)
Q Consensus 179 nRl---l~al~~EA~~lv~-eGis~edID~a~ 206 (269)
|-+ -.+++||+..+.+ .|+++.++=.++
T Consensus 212 N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~ 243 (425)
T PRK15182 212 NTQRDLNIALVNELAIIFNRLNIDTEAVLRAA 243 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence 322 2678899988876 688887775554
No 103
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=51.35 E-value=9.8 Score=37.24 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.0
Q ss_pred cCeEEecCHHHHhcCCCCceEEeec
Q psy9059 52 TGITYLYTYSERLMGSNGLAMVFPL 76 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~~~~V~E~v 76 (269)
-+++.+.+..||+.||| +|+-++
T Consensus 61 ~~v~~t~d~~~al~gad--fVi~~~ 83 (419)
T cd05296 61 IKVHLTTDRREALEGAD--FVFTQI 83 (419)
T ss_pred eEEEEeCCHHHHhCCCC--EEEEEE
Confidence 46888899999999988 999876
No 104
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=51.33 E-value=1.2e+02 Score=30.28 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=84.0
Q ss_pred eEEecCHHHHhcCC-CCceEEeecCCCcCCCchhHHHHHHHhcCCCCc-EEecCCCCCcccccc-c-CCC-CCCCeEEEe
Q psy9059 54 ITYLYTYSERLMGS-NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSER-LMGSNGLAMVFPLQE-Q-IPI-QTPHLIIGM 128 (269)
Q Consensus 54 l~~~~~~~~a~~~~-~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~-iiaSnTS~l~~p~~~-~-~~~-~~p~R~i~~ 128 (269)
++-+.+++|.++.. .+|.|+=+||-.-.++ +++.+|.+++.++. ||-.+||.. +-+. . ..+ .+.-+++.+
T Consensus 48 ~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~---~Vi~~l~~~L~~g~iIID~gns~~--~~t~~~~~~l~~~gi~fvda 122 (467)
T TIGR00873 48 IVGAYSIEEFVQSLERPRKIMLMVKAGAPVD---AVINQLLPLLEKGDIIIDGGNSHY--PDTERRYKELKAKGILFVGS 122 (467)
T ss_pred ceecCCHHHHHhhcCCCCEEEEECCCcHHHH---HHHHHHHhhCCCCCEEEECCCcCH--HHHHHHHHHHHhcCCEEEcC
Confidence 44566777777542 3559999998866665 57788888876555 444444443 2222 1 212 222345554
Q ss_pred eccCCCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEE------EEE-eccCch----hHHHHH---HHHHHHHHH
Q psy9059 129 HYFSPVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVV------ITV-KDGPGF----YTTRIL---STMLSEAMR 191 (269)
Q Consensus 129 HffnP~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~p------v~v-kd~pGf----I~nRll---~al~~EA~~ 191 (269)
.-.--+. .-+ =++.| .++++++++..+++.++... ..+ ....|. |-|-+. ...+.||+.
T Consensus 123 pVsGG~~gA~~G~--~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ 198 (467)
T TIGR00873 123 GVSGGEEGARKGP--SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYD 198 (467)
T ss_pred CCCCCHHHHhcCC--cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432211 111 13333 47899999999999987653 455 323333 333343 345679998
Q ss_pred HHH--cCCCHHHHHHHH
Q psy9059 192 ILQ--EGTSPKDLDRLT 206 (269)
Q Consensus 192 lv~--eGis~edID~a~ 206 (269)
++. .|++++++=.++
T Consensus 199 ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 199 ILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHhcCCCHHHHHHHH
Confidence 874 677888877666
No 105
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=50.92 E-value=2.6e+02 Score=27.69 Aligned_cols=151 Identities=12% Similarity=0.020 Sum_probs=92.9
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCC------CchhHHHHHHHhcCCCCc-EEecCCCC------Cccccccc-
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPI------QTPQQMSERIYMYTYSER-LMGSNGLA------MVFPLQEQ- 116 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~------K~k~~l~~~l~~~~~~~~-iiaSnTS~------l~~p~~~~- 116 (269)
.|+|+.+++.+++- .||.++=|||==++- --=.+--+.|.+++.... +|-=||+- +..|+.+.
T Consensus 70 ~g~lraTtd~~~l~---~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~ 146 (436)
T COG0677 70 SGKLRATTDPEELK---ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEER 146 (436)
T ss_pred cCCceEecChhhcc---cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhc
Confidence 68999999999874 455999999863332 111345667788776554 44444431 11133332
Q ss_pred CCCCCCCeEEEeeccCCCCCC---cEEEEeCCCC----CCHHHHHHHHHHHHhCCcEEEEEeccC--------chhHHHH
Q psy9059 117 IPIQTPHLIIGMHYFSPVDKM---QLLEIITTEQ----TSQDTAASAVAVGLKQGKVVITVKDGP--------GFYTTRI 181 (269)
Q Consensus 117 ~~~~~p~R~i~~HffnP~~~~---~lVEiv~~~~----Ts~e~~~~~~~~~~~lGk~pv~vkd~p--------GfI~nRl 181 (269)
.++..++.|...|- |-+.+ .+.|++..++ -+|+..+.+..+++.+=+..+.+.+.- .-+..-+
T Consensus 147 sgL~~~~Df~lays--PERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdV 224 (436)
T COG0677 147 SGLKFGEDFYLAYS--PERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDV 224 (436)
T ss_pred CCCcccceeeEeeC--ccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHH
Confidence 35777778777775 43332 3556554432 578999999999999766655443321 1134445
Q ss_pred HHHHHHHHHHHH-HcCCCH-HHHHHHH
Q psy9059 182 LSTMLSEAMRIL-QEGTSP-KDLDRLT 206 (269)
Q Consensus 182 l~al~~EA~~lv-~eGis~-edID~a~ 206 (269)
--|+.||-..+. +.||+. +-|+.|-
T Consensus 225 NIALaNElali~~~~GIdvwevIeaAn 251 (436)
T COG0677 225 NIALANELALICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhc
Confidence 578889976665 479955 5566654
No 106
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=50.78 E-value=10 Score=32.60 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=34.1
Q ss_pred ecCHHHHhcCCCCceEEeecCCCcCCCchhHHH-HHHHhcCCCCcEEecCCCCC
Q psy9059 57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS-ERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~-~~l~~~~~~~~iiaSnTS~l 109 (269)
..+++||++.|| +|+=.+|. +.. .++| ++|.+.++++..|.-+ ++|
T Consensus 51 v~~~~eAv~~aD--vV~~L~PD--~~q--~~vy~~~I~p~l~~G~~L~fa-hGf 97 (165)
T PF07991_consen 51 VMSVAEAVKKAD--VVMLLLPD--EVQ--PEVYEEEIAPNLKPGATLVFA-HGF 97 (165)
T ss_dssp CCEHHHHHHC-S--EEEE-S-H--HHH--HHHHHHHHHHHS-TT-EEEES-SSH
T ss_pred eccHHHHHhhCC--EEEEeCCh--HHH--HHHHHHHHHhhCCCCCEEEeC-Ccc
Confidence 359999998877 99999999 666 8898 9999999999988764 345
No 107
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=48.81 E-value=75 Score=29.17 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=81.9
Q ss_pred eEEecCHHHHhcCCC-CceEEeecCCCcCCCchhHHHHHHHhcCCCCc-EEecCCCCCcccccc-c-CCCCCCCeEEEee
Q psy9059 54 ITYLYTYSERLMGSN-GLAMVFPLQEQIPIQTPQQMSERIYMYTYSER-LMGSNGLAMVFPLQE-Q-IPIQTPHLIIGMH 129 (269)
Q Consensus 54 l~~~~~~~~a~~~~~-~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~-iiaSnTS~l~~p~~~-~-~~~~~p~R~i~~H 129 (269)
.+.+.|.+|.++.++ +|+|+=++|.+-.++ +++..+....+++. +|-++|++. ..+. + ..+... +.+
T Consensus 44 ~~~~~s~~~~~~~~~~advVi~~vp~~~~~~---~v~~~i~~~l~~g~ivid~st~~~--~~~~~~~~~~~~~----g~~ 114 (299)
T PRK12490 44 ITARHSLEELVSKLEAPRTIWVMVPAGEVTE---SVIKDLYPLLSPGDIVVDGGNSRY--KDDLRRAEELAER----GIH 114 (299)
T ss_pred CeecCCHHHHHHhCCCCCEEEEEecCchHHH---HHHHHHhccCCCCCEEEECCCCCc--hhHHHHHHHHHHc----CCe
Confidence 466789999987754 569999999864444 56677777676554 444545442 1222 2 222111 223
Q ss_pred ccC-CCCC------CcEEEEeCCCCCCHHHHHHHHHHHHhCCc---EEEEEeccCch------hHHHHH---HHHHHHHH
Q psy9059 130 YFS-PVDK------MQLLEIITTEQTSQDTAASAVAVGLKQGK---VVITVKDGPGF------YTTRIL---STMLSEAM 190 (269)
Q Consensus 130 ffn-P~~~------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk---~pv~vkd~pGf------I~nRll---~al~~EA~ 190 (269)
|.. |+.- -... ++-| -++++++++..+++.+|+ ..+++.+ +|- +.|-+. ...+.||+
T Consensus 115 ~vdapV~G~~~~a~~g~~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~ 190 (299)
T PRK12490 115 YVDCGTSGGVWGLRNGYC-LMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGL 190 (299)
T ss_pred EEeCCCCCCHHHHhcCCe-EEec--CCHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1111 1111 3322 267899999999999997 5666654 331 233222 34567888
Q ss_pred HHHH-cC--CCHHHHHHHHH
Q psy9059 191 RILQ-EG--TSPKDLDRLTK 207 (269)
Q Consensus 191 ~lv~-eG--is~edID~a~~ 207 (269)
.+.+ .| ++++++=.+|.
T Consensus 191 ~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 191 ELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred HHHHHcccCCCHHHHHHHHc
Confidence 8887 45 67777766665
No 108
>PLN02858 fructose-bisphosphate aldolase
Probab=47.13 E-value=1.1e+02 Score=34.66 Aligned_cols=145 Identities=13% Similarity=0.072 Sum_probs=83.2
Q ss_pred EEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCC-CCcEEecCCCCCcccccc-c-CCCCCCCeEEEee
Q psy9059 55 TYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTY-SERLMGSNGLAMVFPLQE-Q-IPIQTPHLIIGMH 129 (269)
Q Consensus 55 ~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~-~~~iiaSnTS~l~~p~~~-~-~~~~~p~R~i~~H 129 (269)
..+.|..|++.++| .|+=+||..-+++ .-++. .+-+.+. ..++|-.||.+- ..+. + ..+.. .--+.+
T Consensus 369 ~~~~s~~e~~~~aD--vVi~~V~~~~~v~--~Vl~g~~g~~~~l~~g~ivVd~STvsP--~~~~~la~~l~~--~g~g~~ 440 (1378)
T PLN02858 369 LAGNSPAEVAKDVD--VLVIMVANEVQAE--NVLFGDLGAVSALPAGASIVLSSTVSP--GFVIQLERRLEN--EGRDIK 440 (1378)
T ss_pred eecCCHHHHHhcCC--EEEEecCChHHHH--HHHhchhhHHhcCCCCCEEEECCCCCH--HHHHHHHHHHHh--hCCCcE
Confidence 34678999997766 9999999776666 54443 2333444 445554555432 1211 2 11111 001334
Q ss_pred cc-CCC-------CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch-----hHHHHH----HHHHHHHHHH
Q psy9059 130 YF-SPV-------DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF-----YTTRIL----STMLSEAMRI 192 (269)
Q Consensus 130 ff-nP~-------~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf-----I~nRll----~al~~EA~~l 192 (269)
|. .|+ ..-.|.=++.| +++.++++..+++.+|+..+++.+.+|- ++|-++ .+.++||+.+
T Consensus 441 ~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 441 LVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred EEEccCCCChhhhhcCCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222 12223334444 5788999999999999877665333342 333333 4567889877
Q ss_pred HH-cCCCHHHHHHHHH-hcC
Q psy9059 193 LQ-EGTSPKDLDRLTK-QFG 210 (269)
Q Consensus 193 v~-eGis~edID~a~~-g~G 210 (269)
.+ .|++++.+=.++. +.|
T Consensus 518 a~k~Gld~~~l~evl~~s~g 537 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGG 537 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcc
Confidence 64 7888888766664 544
No 109
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=46.35 E-value=88 Score=27.24 Aligned_cols=104 Identities=5% Similarity=0.012 Sum_probs=58.1
Q ss_pred cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccc----c-----------cccC-CCCC
Q psy9059 58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFP----L-----------QEQI-PIQT 121 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p----~-----------~~~~-~~~~ 121 (269)
.+..|++.++| +|+=|+|-. .= .++++++....+. .++-|-+-++..+ . ..++ .+..
T Consensus 60 ~~~~ea~~~aD--vVilavp~~--~~--~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~ 132 (219)
T TIGR01915 60 ADNAEAAKRAD--VVILAVPWD--HV--LKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE 132 (219)
T ss_pred eChHHHHhcCC--EEEEECCHH--HH--HHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC
Confidence 46688887766 999999852 11 3455666655554 6666665555211 0 1111 1222
Q ss_pred CCeEEEeeccCCCCCC-------cEEEEeCCCCCCHHHHHHHHHHHHhC-CcEEEEE
Q psy9059 122 PHLIIGMHYFSPVDKM-------QLLEIITTEQTSQDTAASAVAVGLKQ-GKVVITV 170 (269)
Q Consensus 122 p~R~i~~HffnP~~~~-------~lVEiv~~~~Ts~e~~~~~~~~~~~l-Gk~pv~v 170 (269)
..|++..=...|...+ +..-.+-|+ +++..+.+.++.+.+ |..|+.+
T Consensus 133 ~~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~ 187 (219)
T TIGR01915 133 TSRVVAAFHNLSAVLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDA 187 (219)
T ss_pred CCeEeeccccCCHHHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccC
Confidence 1566655333232211 111223332 566788888999999 9999877
No 110
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=41.04 E-value=12 Score=31.13 Aligned_cols=109 Identities=7% Similarity=0.013 Sum_probs=61.0
Q ss_pred CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHH--HHhcCC-CCcEEecCCCCCccccccc-CCCC-CCCeEEE
Q psy9059 53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSER--IYMYTY-SERLMGSNGLAMVFPLQEQ-IPIQ-TPHLIIG 127 (269)
Q Consensus 53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~--l~~~~~-~~~iiaSnTS~l~~p~~~~-~~~~-~p~R~i~ 127 (269)
+.+.++|.+|+++++| .|+=++|..-.++ +++.. |.+.+. ..++|-+||++.. ...++ +.+. +--+++-
T Consensus 44 g~~~~~s~~e~~~~~d--vvi~~v~~~~~v~---~v~~~~~i~~~l~~g~iiid~sT~~p~-~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 44 GAEVADSPAEAAEQAD--VVILCVPDDDAVE---AVLFGENILAGLRPGKIIIDMSTISPE-TSRELAERLAAKGVRYVD 117 (163)
T ss_dssp TEEEESSHHHHHHHBS--EEEE-SSSHHHHH---HHHHCTTHGGGS-TTEEEEE-SS--HH-HHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhhhhHhhccc--ceEeecccchhhh---hhhhhhHHhhccccceEEEecCCcchh-hhhhhhhhhhhccceeee
Confidence 4788999999998877 9999999877766 55555 556555 4455556665530 11112 2222 1122222
Q ss_pred eeccCC---CCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059 128 MHYFSP---VDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170 (269)
Q Consensus 128 ~HffnP---~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v 170 (269)
.=-.-. ...-.+.=++.| ++++++++..+++.+++..+++
T Consensus 118 apV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 118 APVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp EEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred eeeecccccccccceEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence 211110 011233434444 5789999999999999877743
No 111
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=36.70 E-value=47 Score=28.57 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=33.5
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCCcCCC------chhHHHHHHHhcCCCCcEEe
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQ------TPQQMSERIYMYTYSERLMG 103 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K------~k~~l~~~l~~~~~~~~iia 103 (269)
.++|+++++.++++.++| .++=|||=..+-+ -=.+..++|.+++.++.++.
T Consensus 61 ~~~l~~t~~~~~ai~~ad--v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV 117 (185)
T PF03721_consen 61 AGRLRATTDIEEAIKDAD--VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV 117 (185)
T ss_dssp TTSEEEESEHHHHHHH-S--EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE
T ss_pred cccchhhhhhhhhhhccc--eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE
Confidence 589999999999998877 9999997544333 01356777777777766554
No 112
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=34.19 E-value=3e+02 Score=24.67 Aligned_cols=48 Identities=2% Similarity=-0.054 Sum_probs=32.8
Q ss_pred EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 56 YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 56 ~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
..++.++++..+| +|+=|++-. .+ .+++++|.++.+++++|-+..-++
T Consensus 58 ~~~~~~~~~~~~d--~vilavk~~-~~---~~~~~~l~~~~~~~~~ii~~~nG~ 105 (305)
T PRK12921 58 VITDPEELTGPFD--LVILAVKAY-QL---DAAIPDLKPLVGEDTVIIPLQNGI 105 (305)
T ss_pred eecCHHHccCCCC--EEEEEeccc-CH---HHHHHHHHhhcCCCCEEEEeeCCC
Confidence 3456777665555 999999852 22 467788888888888776554455
No 113
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=33.34 E-value=38 Score=31.07 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=77.2
Q ss_pred cCHHHHhcCCCCceEEeec-CCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCC-CCeEEEeeccCCCC
Q psy9059 58 YTYSERLMGSNGLAMVFPL-QEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQT-PHLIIGMHYFSPVD 135 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~v-pE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~-p~R~i~~HffnP~~ 135 (269)
..+.+++..+.++.|-=++ ..++.-+...+++.-|+ ..+..+--|||+- ....++-...+ .....+.+|.
T Consensus 23 ~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~---~~~~~~lpNTaG~-~ta~eAv~~a~lare~~~~~~i---- 94 (248)
T cd04728 23 AIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLD---KSGYTLLPNTAGC-RTAEEAVRTARLAREALGTDWI---- 94 (248)
T ss_pred HHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcc---ccCCEECCCCCCC-CCHHHHHHHHHHHHHHhCCCeE----
Confidence 4567888777777888887 44442221256666654 2678999999996 24444311111 1123344553
Q ss_pred CCcEEEEeCCCCC----CHHHHHHHHHHHHhCCcEEE-EEeccC-------------------------chhHHHHHHHH
Q psy9059 136 KMQLLEIITTEQT----SQDTAASAVAVGLKQGKVVI-TVKDGP-------------------------GFYTTRILSTM 185 (269)
Q Consensus 136 ~~~lVEiv~~~~T----s~e~~~~~~~~~~~lGk~pv-~vkd~p-------------------------GfI~nRll~al 185 (269)
=+||++.++| ..+++++++.+.+ -|...+ ++.|.| | +.|.=+-..
T Consensus 95 ---KlEVi~d~~~Llpd~~~tv~aa~~L~~-~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~G-i~~~~~I~~ 169 (248)
T cd04728 95 ---KLEVIGDDKTLLPDPIETLKAAEILVK-EGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQG-LLNPYNLRI 169 (248)
T ss_pred ---EEEEecCccccccCHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCC-CCCHHHHHH
Confidence 3899987765 2344444444432 277777 344321 2 223322234
Q ss_pred HHHHH---HHHHcCC-CHHHHHHHHH-h
Q psy9059 186 LSEAM---RILQEGT-SPKDLDRLTK-Q 208 (269)
Q Consensus 186 ~~EA~---~lv~eGi-s~edID~a~~-g 208 (269)
+.+.. -+++-|| +++|+.++|. |
T Consensus 170 I~e~~~vpVI~egGI~tpeda~~AmelG 197 (248)
T cd04728 170 IIERADVPVIVDAGIGTPSDAAQAMELG 197 (248)
T ss_pred HHHhCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 44432 2245678 9999999986 5
No 114
>KOG2738|consensus
Probab=33.28 E-value=46 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy9059 177 YTTRILSTMLSEAMRILQEGTSPKDLDRLT 206 (269)
Q Consensus 177 I~nRll~al~~EA~~lv~eGis~edID~a~ 206 (269)
.+-||..-++++|..++.=|+|.++||+++
T Consensus 127 ~ac~LarevLd~Aa~~v~PgvTTdEiD~~V 156 (369)
T KOG2738|consen 127 KACRLAREVLDYAATLVRPGVTTDEIDRAV 156 (369)
T ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 456777888889999999999999999985
No 115
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=32.69 E-value=50 Score=33.10 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=64.6
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCC--eEEEeecc
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPH--LIIGMHYF 131 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~--R~i~~Hff 131 (269)
++. .+++||+..|| +|+=.+|.. . . ..+++++.+++++++.|+=+. || .+... ...-|. .++-+-|=
T Consensus 86 F~v-~~~~Ea~~~AD--vVviLlPDt-~-q--~~v~~~i~p~LK~Ga~L~fsH-GF--ni~~~-~i~~~~dvdVimvAPK 154 (487)
T PRK05225 86 FKV-GTYEELIPQAD--LVINLTPDK-Q-H--SDVVRAVQPLMKQGAALGYSH-GF--NIVEV-GEQIRKDITVVMVAPK 154 (487)
T ss_pred Ccc-CCHHHHHHhCC--EEEEcCChH-H-H--HHHHHHHHhhCCCCCEEEecC-Cc--eeeeC-ceeCCCCCcEEEECCC
Confidence 344 58999998877 999999997 3 7 999999999999999998654 34 22221 111111 23333333
Q ss_pred CCCCC----------Cc-EEEEeCCCCCCHHHHHHHHHHHHhCCcE
Q psy9059 132 SPVDK----------MQ-LLEIITTEQTSQDTAASAVAVGLKQGKV 166 (269)
Q Consensus 132 nP~~~----------~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~ 166 (269)
-|-+. +| ++-|-+-...+-...+.+.+++..+|-.
T Consensus 155 gpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 155 CPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred CCCchHHHHHhcCCCceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 33221 22 3333321334555778888999888866
No 116
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=31.68 E-value=4.7e+02 Score=25.06 Aligned_cols=134 Identities=17% Similarity=0.177 Sum_probs=83.3
Q ss_pred ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH-HHHhcCCCCcEEecCCCCCcccccccCCCCCCC--eEEEeeccCC
Q psy9059 57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE-RIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPH--LIIGMHYFSP 133 (269)
Q Consensus 57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~-~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~--R~i~~HffnP 133 (269)
..|++||+..|| +|.--+|. ++. .++|. +|.+.+.+...|+=+ .+| .+.. ....-|. .++-+-|=-|
T Consensus 65 V~~v~ea~k~AD--vim~L~PD--e~q--~~vy~~~I~p~Lk~G~aL~Fa-HGf--Nihf-~~i~ppkdvdV~MVAPKgP 134 (338)
T COG0059 65 VYTVEEAAKRAD--VVMILLPD--EQQ--KEVYEKEIAPNLKEGAALGFA-HGF--NIHF-GLIVPPKDVDVIMVAPKGP 134 (338)
T ss_pred eecHHHHhhcCC--EEEEeCch--hhH--HHHHHHHhhhhhcCCceEEec-ccc--ceec-ceecCCccCcEEEEcCCCC
Confidence 469999998877 99999999 777 89999 999999999877754 345 2222 0111121 2222333333
Q ss_pred CCC----------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEE---EEE--ec-------cCchhHHHHHHHHHHHHH-
Q psy9059 134 VDK----------MQLLEIITTEQTSQDTAASAVAVGLKQGKVV---ITV--KD-------GPGFYTTRILSTMLSEAM- 190 (269)
Q Consensus 134 ~~~----------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~p---v~v--kd-------~pGfI~nRll~al~~EA~- 190 (269)
-++ +|.+=-|.... +-...+.+.++++.+|-+. +.. ++ ..--++.-.+.+++..++
T Consensus 135 G~~VR~~y~~G~GvP~LiAV~qD~-sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfe 213 (338)
T COG0059 135 GHLVRREYKEGFGVPALIAVHQDA-SGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFE 213 (338)
T ss_pred cHHHHHHHHccCCceeEEEEEeCC-CchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHH
Confidence 222 23332333333 4457788889999988543 222 21 112356666788888887
Q ss_pred HHHHcCCCHHH
Q psy9059 191 RILQEGTSPKD 201 (269)
Q Consensus 191 ~lv~eGis~ed 201 (269)
.|++.|++|+-
T Consensus 214 tLvEaGy~PE~ 224 (338)
T COG0059 214 TLVEAGYQPEL 224 (338)
T ss_pred HHHHcCCCHHH
Confidence 56788987764
No 117
>PRK00208 thiG thiazole synthase; Reviewed
Probab=30.96 E-value=38 Score=31.05 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=76.4
Q ss_pred cCHHHHhcCCCCceEEeec-CCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCC-CeEEEeeccCCCC
Q psy9059 58 YTYSERLMGSNGLAMVFPL-QEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTP-HLIIGMHYFSPVD 135 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~v-pE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p-~R~i~~HffnP~~ 135 (269)
..+.+++..+.+++|-=++ ..++.-+ +.+++.-|+ ..+..+--|||+- ....++-...+= ....+.+|.
T Consensus 24 ~~~~~ai~asg~~ivTvalrR~~~~~~-~~~~~~~i~---~~~~~~lpNTaG~-~ta~eAv~~a~lare~~~~~~i---- 94 (250)
T PRK00208 24 QVMQEAIEASGAEIVTVALRRVNLGQG-GDNLLDLLP---PLGVTLLPNTAGC-RTAEEAVRTARLAREALGTNWI---- 94 (250)
T ss_pred HHHHHHHHHhCCCeEEEEEEeecCCCC-cchHHhhcc---ccCCEECCCCCCC-CCHHHHHHHHHHHHHHhCCCeE----
Confidence 4677888877788888888 3333322 256666654 2688999999996 244443111111 122344443
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHhC---CcEEE-EEeccCc------------------------hhHHHHHHHHHH
Q psy9059 136 KMQLLEIITTEQTSQDTAASAVAVGLKQ---GKVVI-TVKDGPG------------------------FYTTRILSTMLS 187 (269)
Q Consensus 136 ~~~lVEiv~~~~Ts~e~~~~~~~~~~~l---Gk~pv-~vkd~pG------------------------fI~nRll~al~~ 187 (269)
=+||++.++|.-.-.....+-++.+ |...+ ++.|.|- -+.|.=....+.
T Consensus 95 ---KlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~ 171 (250)
T PRK00208 95 ---KLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIII 171 (250)
T ss_pred ---EEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH
Confidence 3899997776433333333334444 87777 4443211 122322233333
Q ss_pred HHH---HHHHcCC-CHHHHHHHHH-h
Q psy9059 188 EAM---RILQEGT-SPKDLDRLTK-Q 208 (269)
Q Consensus 188 EA~---~lv~eGi-s~edID~a~~-g 208 (269)
+.. -+++-|| +++|+..+|. |
T Consensus 172 e~~~vpVIveaGI~tpeda~~AmelG 197 (250)
T PRK00208 172 EQADVPVIVDAGIGTPSDAAQAMELG 197 (250)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHHHcC
Confidence 322 1235678 8999999886 5
No 118
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=29.45 E-value=1.3e+02 Score=27.85 Aligned_cols=85 Identities=5% Similarity=0.028 Sum_probs=38.8
Q ss_pred CcCeEEecCHHHHhc-C-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecC-CCCCc--c-cccccCCCCCCCe
Q psy9059 51 HTGITYLYTYSERLM-G-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSN-GLAMV--F-PLQEQIPIQTPHL 124 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~-~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSn-TS~l~--~-p~~~~~~~~~p~R 124 (269)
..+++|...-...+. + .+.|.|+=|.-=-.+-+.|.+++..|.++++++++|.-= ..|+. + |.-+-..+..=+.
T Consensus 173 ~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~ 252 (276)
T PF03059_consen 173 SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEV 252 (276)
T ss_dssp -SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEE
T ss_pred cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEE
Confidence 466777643332222 1 234477777643333344599999999999999988743 33330 1 3222223344456
Q ss_pred EEEeeccCCCC
Q psy9059 125 IIGMHYFSPVD 135 (269)
Q Consensus 125 ~i~~HffnP~~ 135 (269)
+..+||.+++.
T Consensus 253 ~~~~hP~~~Vi 263 (276)
T PF03059_consen 253 LAVVHPTDEVI 263 (276)
T ss_dssp EEEE---TT--
T ss_pred EEEECCCCCce
Confidence 77888887764
No 119
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=29.04 E-value=3.2e+02 Score=22.26 Aligned_cols=53 Identities=9% Similarity=0.238 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEEEecc-------CchhHHHHHHHHHHHHHHHHH-cCCCHHH
Q psy9059 149 SQDTAASAVAVGLKQGKVVITVKDG-------PGFYTTRILSTMLSEAMRILQ-EGTSPKD 201 (269)
Q Consensus 149 s~e~~~~~~~~~~~lGk~pv~vkd~-------pGfI~nRll~al~~EA~~lv~-eGis~ed 201 (269)
+++..+.+..+++++|..|+.+.+. ..-+++-.+..++..|..+++ .|++.++
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~ 69 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEE 69 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchh
Confidence 7889999999999999999999321 133577778888889988876 5776654
No 120
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=28.16 E-value=48 Score=28.86 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=19.0
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeec
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPL 76 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~v 76 (269)
.-+++.++|..||++||| +|+-++
T Consensus 58 ~~~v~~ttd~~eAl~gAD--fVi~~i 81 (183)
T PF02056_consen 58 DLKVEATTDRREALEGAD--FVINQI 81 (183)
T ss_dssp SSEEEEESSHHHHHTTES--EEEE--
T ss_pred CeEEEEeCCHHHHhCCCC--EEEEEe
Confidence 356788999999999988 999765
No 121
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=27.62 E-value=39 Score=31.21 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=84.4
Q ss_pred cCHHHHhcCCCCceEEeec-CCCcCCCch-hHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCC-C
Q psy9059 58 YTYSERLMGSNGLAMVFPL-QEQIPIQTP-QQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSP-V 134 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~v-pE~l~~K~k-~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP-~ 134 (269)
..+.+|+..+.+++|-=++ ..+++.+.+ .+++..|+. .+..+--|||+- ....++-.+.+=.|=+.-+-=++ -
T Consensus 30 ~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~---~~~~~LPNTaGc-~tA~EAv~~A~laRe~~~~~~~~~~ 105 (267)
T CHL00162 30 KDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDW---NKLWLLPNTAGC-QTAEEAIRMAFLGRELAKQLGQEDN 105 (267)
T ss_pred HHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhch---hccEECCcCcCC-CCHHHHHHHHHHHHHHhccccccCC
Confidence 4577888878888998888 333332211 567666653 577899999996 24444311111112122000001 0
Q ss_pred CCCcEEEEeCCCCC----CHHHHHHHHHHHHhCCcEEEEE-eccC------------------------chhHHHHHHHH
Q psy9059 135 DKMQLLEIITTEQT----SQDTAASAVAVGLKQGKVVITV-KDGP------------------------GFYTTRILSTM 185 (269)
Q Consensus 135 ~~~~lVEiv~~~~T----s~e~~~~~~~~~~~lGk~pv~v-kd~p------------------------GfI~nRll~al 185 (269)
..+ =+||++.++| .-++++.++.+. +-|..+..+ .+-| --+.|+-.-.+
T Consensus 106 ~wI-KLEVi~D~~~LlPD~~etl~Aae~Lv-~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~ 183 (267)
T CHL00162 106 NFV-KLEVISDPKYLLPDPIGTLKAAEFLV-KKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQI 183 (267)
T ss_pred CeE-EEEEeCCCcccCCChHHHHHHHHHHH-HCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHH
Confidence 112 3799987665 446666666665 447666554 3211 12567777777
Q ss_pred HHHHH---HHHHcCC-CHHHHHHHHH-hc
Q psy9059 186 LSEAM---RILQEGT-SPKDLDRLTK-QF 209 (269)
Q Consensus 186 ~~EA~---~lv~eGi-s~edID~a~~-g~ 209 (269)
+.|.. -+++.|| +++|+-.+|. |.
T Consensus 184 i~e~~~vpVivdAGIgt~sDa~~AmElGa 212 (267)
T CHL00162 184 IIENAKIPVIIDAGIGTPSEASQAMELGA 212 (267)
T ss_pred HHHcCCCcEEEeCCcCCHHHHHHHHHcCC
Confidence 77743 3457899 9999999996 64
No 122
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=27.45 E-value=69 Score=26.10 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=35.6
Q ss_pred cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhc--CCCCcEEecCCCCCcccccccCCC-CCCCeEEEeec
Q psy9059 58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMY--TYSERLMGSNGLAMVFPLQEQIPI-QTPHLIIGMHY 130 (269)
Q Consensus 58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~--~~~~~iiaSnTS~l~~p~~~~~~~-~~p~R~i~~Hf 130 (269)
.++.|.+..+| +|+=+||++ .= .++.++|... ..++.|+.= ||+- ++++.+.+. ..-..+..+||
T Consensus 60 ~~~~~~~~~aD--lv~iavpDd--aI--~~va~~La~~~~~~~g~iVvH-tSGa-~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 60 LDLEEILRDAD--LVFIAVPDD--AI--AEVAEQLAQYGAWRPGQIVVH-TSGA-LGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp --TTGGGCC-S--EEEE-S-CC--HH--HHHHHHHHCC--S-TT-EEEE-S-SS---GGGGHHHHHTT-EEEEEEE
T ss_pred cccccccccCC--EEEEEechH--HH--HHHHHHHHHhccCCCCcEEEE-CCCC-ChHHhhhhHHHCCCeEEEeCc
Confidence 46778887666 999999996 34 6888899887 556665542 3332 245444332 33456777885
No 123
>PLN02527 aspartate carbamoyltransferase
Probab=27.32 E-value=37 Score=31.81 Aligned_cols=17 Identities=6% Similarity=-0.204 Sum_probs=15.3
Q ss_pred cCeEEecCHHHHhcCCC
Q psy9059 52 TGITYLYTYSERLMGSN 68 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~ 68 (269)
+++++.+++.||++|||
T Consensus 204 ~~~~~~~d~~~a~~~aD 220 (306)
T PLN02527 204 VEWEESSDLMEVASKCD 220 (306)
T ss_pred CEEEEEcCHHHHhCCCC
Confidence 56788999999999999
No 124
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=26.43 E-value=4.9e+02 Score=23.55 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHhcCCCchhhHHHHhhchHHHHHHHHHH
Q psy9059 197 TSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDL 234 (269)
Q Consensus 197 is~edID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l 234 (269)
||.++|+.++......-..|+++|.++-.....+++.+
T Consensus 237 It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l 274 (337)
T PRK12402 237 ITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTL 274 (337)
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 39999998764333445888999888744443333333
No 125
>PRK08605 D-lactate dehydrogenase; Validated
Probab=24.54 E-value=1.1e+02 Score=28.84 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=37.3
Q ss_pred eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
.++..+++|++..+| +|+-++|-.-+-+ .=+=+++-+.++++++|-.-+.+-
T Consensus 188 ~~~~~~l~ell~~aD--vIvl~lP~t~~t~--~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 188 VDYKDTIEEAVEGAD--IVTLHMPATKYNH--YLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred ccccCCHHHHHHhCC--EEEEeCCCCcchh--hhcCHHHHhcCCCCcEEEECCCCc
Confidence 566779999998877 9999999877766 522244556678888766555543
No 126
>KOG2949|consensus
Probab=24.37 E-value=52 Score=30.13 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=35.9
Q ss_pred hcCCCCc-eEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccCCCCCCcEEE
Q psy9059 64 LMGSNGL-AMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFSPVDKMQLLE 141 (269)
Q Consensus 64 ~~~~~~~-~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~HffnP~~~~~lVE 141 (269)
++.+.|+ +|+||||+.+... -||.+|+|.--+ ++-....+++++| .++-
T Consensus 194 Lqk~Gc~svvlECvP~~~A~~---------------------iTs~lsiPTIGIGAG~~tsGQvLV~h--------DlLG 244 (306)
T KOG2949|consen 194 LQKAGCFSVVLECVPPPVAAA---------------------ITSALSIPTIGIGAGPFTSGQVLVYH--------DLLG 244 (306)
T ss_pred HHhcccceEeeecCChHHHHH---------------------HHhccCCcceeeccCCCCCceEEEeh--------hhhh
Confidence 3334443 5789999844322 256666664334 5555668999999 4667
Q ss_pred EeCCCCCC
Q psy9059 142 IITTEQTS 149 (269)
Q Consensus 142 iv~~~~Ts 149 (269)
++.+++|.
T Consensus 245 m~g~~~~P 252 (306)
T KOG2949|consen 245 MMGHPKTP 252 (306)
T ss_pred hcCCCCCc
Confidence 78887654
No 127
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=23.18 E-value=35 Score=27.72 Aligned_cols=24 Identities=4% Similarity=0.051 Sum_probs=20.4
Q ss_pred hHHHHHHHhcCCCCcEEecCCCCC
Q psy9059 86 QQMSERIYMYTYSERLMGSNGLAM 109 (269)
Q Consensus 86 ~~l~~~l~~~~~~~~iiaSnTS~l 109 (269)
.++|++|..++.++++++|.||.-
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~a~ 93 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSSAG 93 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES--BH
T ss_pred HHHHHHHHHHhCCCcEEEEeechH
Confidence 689999999999999999999864
No 128
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=23.16 E-value=1.1e+02 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCcEEEEEeccCchh
Q psy9059 145 TEQTSQDTAASAVAVGLKQGKVVITVKDGPGFY 177 (269)
Q Consensus 145 ~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI 177 (269)
+..|+|++++.+.+.+++.|..++.+.|.++.-
T Consensus 17 ~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~ 49 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEAGAKEIIIAESPGSG 49 (206)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEeCCCcc
Confidence 667999999999999999999988888888765
No 129
>KOG3446|consensus
Probab=22.96 E-value=80 Score=24.45 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=45.2
Q ss_pred EeCCCCCCHHHHHHHHHHHHhCCc----EEEEEeccCchhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059 142 IITTEQTSQDTAASAVAVGLKQGK----VVITVKDGPGFYTTRILSTMLSEAMRILQ-EGTSPKDLDRLTK 207 (269)
Q Consensus 142 iv~~~~Ts~e~~~~~~~~~~~lGk----~pv~vkd~pGfI~nRll~al~~EA~~lv~-eGis~edID~a~~ 207 (269)
+.+...+|.-+.+.+..++..+.| -|+.++|..| |.-|+++.+-+---+.+. ++.+.++|-+++.
T Consensus 22 lcqkspaSagvR~fvEk~Y~~lKkaNP~lPILIREcSg-VqPrl~ARY~~G~E~~v~L~~~s~~~i~kale 91 (97)
T KOG3446|consen 22 LCQKSPASAGVREFVEKFYVNLKKANPDLPILIRECSG-VQPRLWARYGNGVERSVSLANLSAPQIHKALE 91 (97)
T ss_pred ecCCCCcchhHHHHHHHhhhhhhhcCCCCcEeehhhcC-CchHHHHHhcCCceEEeehhhcchHHHHHHHH
Confidence 556667888999999999877654 4899999887 678887766543333332 3346677777664
No 130
>KOG3843|consensus
Probab=21.50 E-value=86 Score=29.54 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=69.8
Q ss_pred eEEeecCCCcCCCchhHHHHHHHhcCCCCcEEe--cCCCCCccccc-c-cCCCCCCCeEEEe----eccCCCCCCcEEEE
Q psy9059 71 AMVFPLQEQIPIQTPQQMSERIYMYTYSERLMG--SNGLAMVFPLQ-E-QIPIQTPHLIIGM----HYFSPVDKMQLLEI 142 (269)
Q Consensus 71 ~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iia--SnTS~l~~p~~-~-~~~~~~p~R~i~~----HffnP~~~~~lVEi 142 (269)
.|+|++-|+=++-+--+...++-+...+|||++ |.||+|. |-+ + .+... -++.. |-.|-+|-+
T Consensus 128 iiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfa-pr~pd~leaia---aica~~diphivnnaygl----- 198 (432)
T KOG3843|consen 128 IIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFA-PRSPDNLEAIA---AICAAHDIPHIVNNAYGL----- 198 (432)
T ss_pred eeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccC-CCCCchHHHHH---HHHHccCchhhhcccccc-----
Confidence 799999998877744555666666689999988 7788883 311 1 11110 11222 444444432
Q ss_pred eCCCCCCHHHHH---------HHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q psy9059 143 ITTEQTSQDTAA---------SAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLT 206 (269)
Q Consensus 143 v~~~~Ts~e~~~---------~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~ 206 (269)
.|++++. ++.+|.+++.|...+- +-|-|..-.-...+.|...+..-.. +.-..|..+
T Consensus 199 -----qsee~i~~iaa~~~~grida~vqsldknf~vp--vggaiia~fk~n~iq~iak~ypgrasa~ps~dlli 265 (432)
T KOG3843|consen 199 -----QSEECIHKIAAAAECGRIDAFVQSLDKNFMVP--VGGAIIAAFKDNFIQEIAKMYPGRASASPSLDLLI 265 (432)
T ss_pred -----chHHHHHHHHHHhhhccHHHHHHHhhhcceee--cchhHhhHhHHHHHHHHHHhCCCccccCccHHHHH
Confidence 2344433 3446777777665331 2356666666667777777776555 334566654
No 131
>KOG0409|consensus
Probab=21.40 E-value=5.5e+02 Score=24.52 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=89.3
Q ss_pred EEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHh---cCCCCcE-EecCCCCCccccccc-CCC-CCCCeEEEe
Q psy9059 55 TYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYM---YTYSERL-MGSNGLAMVFPLQEQ-IPI-QTPHLIIGM 128 (269)
Q Consensus 55 ~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~---~~~~~~i-iaSnTS~l~~p~~~~-~~~-~~p~R~i~~ 128 (269)
+...|.+|-.+.+| .|+-.||...+.| .-++..--- ..+-.+. |-++|+.=. .+.++ ... .+-.|++=.
T Consensus 80 ~v~~sPaeVae~sD--vvitmv~~~~~v~--~v~~g~~Gvl~g~~~g~~~~vDmSTidp~-~s~ei~~~i~~~~~~~vDA 154 (327)
T KOG0409|consen 80 RVANSPAEVAEDSD--VVITMVPNPKDVK--DVLLGKSGVLSGIRPGKKATVDMSTIDPD-TSLEIAKAISNKGGRFVDA 154 (327)
T ss_pred hhhCCHHHHHhhcC--EEEEEcCChHhhH--HHhcCCCcceeeccCCCceEEeccccCHH-HHHHHHHHHHhCCCeEEec
Confidence 45567888887777 9999999998888 666654322 2233333 556665421 12233 223 333444432
Q ss_pred eccC---CCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc----CchhHHHHHHHH----HHHHHHHHH-cC
Q psy9059 129 HYFS---PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG----PGFYTTRILSTM----LSEAMRILQ-EG 196 (269)
Q Consensus 129 Hffn---P~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~----pGfI~nRll~al----~~EA~~lv~-eG 196 (269)
|.+ +....--+-|+.| .++++++++...++-+||..+.+..+ ..-+.|.++.+. +.||+.+.+ .|
T Consensus 155 -PVSGg~~~A~~G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G 231 (327)
T KOG0409|consen 155 -PVSGGVKGAEEGTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG 231 (327)
T ss_pred -cccCCchhhhcCeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111 1111223445555 78999999999999999999988332 224666665443 468887754 78
Q ss_pred CCHHHHHHHHH-hcCC
Q psy9059 197 TSPKDLDRLTK-QFGF 211 (269)
Q Consensus 197 is~edID~a~~-g~G~ 211 (269)
+++..+=.++. |-.+
T Consensus 232 Ld~~~l~eiln~G~~~ 247 (327)
T KOG0409|consen 232 LDAKKLLEILNTGRCW 247 (327)
T ss_pred CCHHHHHHHHhcCCcc
Confidence 87777666664 4433
No 132
>PHA02978 hypothetical protein; Provisional
Probab=21.32 E-value=37 Score=27.35 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=21.4
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecCCC
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQEQ 79 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~ 79 (269)
..+.++..+++=-.-..++|+++||+.|+
T Consensus 94 ~tk~~~~d~~siiaikcn~dyliecis~~ 122 (135)
T PHA02978 94 CTKFIQADMLSIIAIKCNCDYLIECISEN 122 (135)
T ss_pred ceeEEeeeeeEEEEEEeCCCeeeeeecCC
Confidence 55666666666555556889999999985
No 133
>PRK15076 alpha-galactosidase; Provisional
Probab=21.20 E-value=77 Score=31.10 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.3
Q ss_pred CcCeEEecCHHHHhcCCCCceEEeecC
Q psy9059 51 HTGITYLYTYSERLMGSNGLAMVFPLQ 77 (269)
Q Consensus 51 ~~~l~~~~~~~~a~~~~~~~~V~E~vp 77 (269)
..++++++++.+|++||| +|++++.
T Consensus 60 ~~~i~~ttD~~eal~dAD--fVv~ti~ 84 (431)
T PRK15076 60 SAKITATTDRREALQGAD--YVINAIQ 84 (431)
T ss_pred CeEEEEECCHHHHhCCCC--EEeEeee
Confidence 367888999999998877 9999983
No 134
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=21.16 E-value=2e+02 Score=26.82 Aligned_cols=17 Identities=6% Similarity=0.005 Sum_probs=15.3
Q ss_pred cCeEEecCHHHHhcCCC
Q psy9059 52 TGITYLYTYSERLMGSN 68 (269)
Q Consensus 52 ~~l~~~~~~~~a~~~~~ 68 (269)
+++++..++.||++|||
T Consensus 202 ~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 202 IKVRETESLEEVIDEAD 218 (301)
T ss_pred CEEEEECCHHHHhCCCC
Confidence 56888999999999998
Done!