RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9059
(269 letters)
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 221 bits (565), Expect = 1e-67
Identities = 51/147 (34%), Positives = 78/147 (53%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P +GMH+F+PV M L+E+I E++S A+ VA K GK I V D PGF R+
Sbjct: 444 PENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRV 503
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
L +++ G +D++ ++FG+P+G A L D VGID G H +++ F DR
Sbjct: 504 LFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDR 563
Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
+ ++ + E L KN G+Y
Sbjct: 564 MKDDRRSAIDALYEAKRLGQKNGKGFY 590
Score = 43.8 bits (104), Expect = 4e-05
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 180 RILSTMLSEAMRILQEG--TSPKDLDR-LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
++ + E +R L++G + + D L GFP+ GA D +G+ +A
Sbjct: 630 WMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQ 689
Query: 234 LSKTFGDRFSGGNLNVLNEMVEKG 257
++ G + L EM + G
Sbjct: 690 YAE-LGALYHPTAK--LREMAKNG 710
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 213 bits (545), Expect = 1e-64
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
I+G H+FSP M LLEI+ T TS + VG K K + V + GF R+
Sbjct: 442 QDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRM 501
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
AM +++ G P +DR +FG P+G L D VG V A + F +R
Sbjct: 502 FFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSER 561
Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
++ M E + G+Y
Sbjct: 562 TYKS--MIIPLMQEDKRAGEATRKGFY 586
Score = 50.0 bits (120), Expect = 3e-07
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 180 RILSTMLSEAMRILQEG--TSPKDLDR-LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
+++EA R+ EG DLD GFP G +D +G +
Sbjct: 630 MTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDE 689
Query: 234 LSKTFGDRFSGGNLNVLNEMVEKG 257
SK +G+ F L E KG
Sbjct: 690 WSKAYGEFFKPCAF--LAERGSKG 711
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 202 bits (515), Expect = 3e-60
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P L+IG H+FSP M+LLE+I + +S T A+ +++ K GK+ + V + GF R+
Sbjct: 444 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 503
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK-------DL 234
L+ ++ +L+EG+ P+D+D + ++FGF +G +SD G+DVG I K L
Sbjct: 504 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSL 563
Query: 235 SKTFGDRFSGGNL--NVLNEMVEKGYLDFKNKDGYY 268
R G + + + + E G K G+Y
Sbjct: 564 PPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWY 599
Score = 39.6 bits (93), Expect = 8e-04
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 180 RILSTMLSEAMRILQEG--TSPKDLDRLTKQF--GFPV---GAATLSDEVGIDVGAHIAK 232
R L ++++EA RIL+EG P+ +D + G+P G + VG+ +
Sbjct: 641 RCLYSLINEAFRILEEGMAARPEHID-VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQ 699
Query: 233 DLSKTFGD--RFSGGNLNVLNEMVEKG 257
+ D + + L +V +G
Sbjct: 700 KYYRQNPDIPQLEPSDY--LRRLVAQG 724
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 195 bits (499), Expect = 5e-60
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P L+IG H+FSP M+LLE+I + +S T A+ +++ K GK+ + V + GF R+
Sbjct: 165 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 224
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK-------DL 234
L+ ++ +L+EG+ P+D+D + ++FGF +G +SD G+DVG I K L
Sbjct: 225 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSL 284
Query: 235 SKTFGDRFSGGNL--NVLNEMVEKGYLDFKNKDGYY 268
R G + + + + E G K G+Y
Sbjct: 285 PPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWY 320
Score = 39.9 bits (94), Expect = 6e-04
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 180 RILSTMLSEAMRILQEG--TSPKDLDR-LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
R L ++++EA RIL+EG P+ +D +G+P G + VG+ +
Sbjct: 362 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQK 421
Query: 234 LSKTFGD--RFSGGNLNVLNEMVEKG 257
+ D + + L +V +G
Sbjct: 422 YYRQNPDIPQLEPSDY--LRRLVAQG 445
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 190 bits (484), Expect = 7e-58
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P ++G+H+F+P + ++L+EII TS A+A K+ + V + F R+
Sbjct: 181 PSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRL 240
Query: 182 LSTMLSEAMRILQE-GTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD 240
L ++ +++ E G P +D++ FGF +G T++D G DV + K+
Sbjct: 241 LHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKENGLEPNP 300
Query: 241 RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
+ EM K G+Y
Sbjct: 301 --------IEKEMWRLKRYGRKTNKGFY 320
Score = 35.3 bits (82), Expect = 0.018
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 180 RILSTMLSEAMRILQEG--TSPKDLDR-LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
+L ++E R ++EG ++ +D FG+P+ G G+D A++
Sbjct: 361 FMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVH 420
Query: 234 LSKTFGD 240
S
Sbjct: 421 WSSLEPK 427
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 130 bits (330), Expect = 1e-36
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
G+H+F+PV M+L+E+I T TSQ T S V GK ++ KD PGF R+
Sbjct: 151 QDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 210
Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
L L EA+R+ + G S +D+D K G+P+G L D VG+D I +
Sbjct: 211 LVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDA 270
Query: 240 D--RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
+ LN++V + K +G+Y
Sbjct: 271 ENPLHQPSPS--LNKLVAENKFGKKTGEGFY 299
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 124 bits (314), Expect = 2e-34
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P +G+H+ +P M L+EI+ + T T A + GK V+ K R
Sbjct: 122 PSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS--LVNRF 179
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTK-QFGF---PVGAATLSDEVGIDVGAHIAKDLSKT 237
+ +LSEA R+++EG +D+DR+ K G G D +G+DV + + L K
Sbjct: 180 NAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKR 239
Query: 238 FGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
FGD +F L E ++KG + K G Y
Sbjct: 240 FGDEKFKPPEW--LQEKIKKGEVGVKAGKGIY 269
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 127 bits (322), Expect = 3e-34
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P + G+H+F+P M+L+E+++ T+ + + L GK + PGF R+
Sbjct: 135 PERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRV 194
Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
SEA R L+E +P+ +D + GFP+G L+D +G DV + + F
Sbjct: 195 ARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFW 254
Query: 240 D--RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269
RF + E+V G L K+ G Y
Sbjct: 255 QERRFLPSLV--QQELVIGGRLGKKSGLGVYD 284
Score = 99.3 bits (248), Expect = 5e-24
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
P ++I +++ I A+ +QGK V+ + D PG R
Sbjct: 340 PVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRT 393
Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
++ +++EA+ LQ+G S +D+D + +P G ++G + ++L +G
Sbjct: 394 VAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYG 453
Query: 240 DR 241
+
Sbjct: 454 EE 455
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 89.7 bits (223), Expect = 4e-21
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTR 180
I H +P + L+E++ +TS T A+ K G+ + V K+ GF R
Sbjct: 138 VKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNR 197
Query: 181 ILSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFP---VGAATLSDEVGIDVGAHIA---- 231
+ ++SEA R+++EG SP DLD + G +G + ++
Sbjct: 198 LQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLSYSDRYSE 257
Query: 232 --KDLSKTFGD 240
K + K+FG
Sbjct: 258 GMKRVLKSFGS 268
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
APC7539, PSI-2, protein structure initiative; 2.46A
{Archaeoglobus fulgidus dsm 4304}
Length = 110
Score = 69.2 bits (170), Expect = 3e-15
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 160 GLKQGKVVITVKDGPGFY--TTRILSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGA 215
G +G+ I ++EA+++++ G +P+D+D K P G
Sbjct: 1 GHSKGRPQI-DSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59
Query: 216 ATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDG 266
L+ + G + A ++L+K FG F L E + L +G
Sbjct: 60 FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKT--LKEGKLEELLKAGKAEG 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.062
Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 111/275 (40%)
Query: 10 LIIID-------LRQFLHGEGSEWLDLQETCQRTVYALCTTVPLVSTSHTGITYLYTYSE 62
L+++ F +L C L++T +T +
Sbjct: 247 LLVLLNVQNAKAWNAF---------NLS----------CKI--LLTTRFKQVT------D 279
Query: 63 RLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQT- 121
L + L TP + + L L Q
Sbjct: 280 FLSAAT--TTHISLDHHSMTLTPDE----------VKSL-----LLKYL----DCRPQDL 318
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG------ 175
P ++ + P + L II A S ++DG
Sbjct: 319 PREVLTTN---P----RRLSII---------AES--------------IRDGLATWDNWK 348
Query: 176 FYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFG-FPVGAATLSDEVGIDVGAHI-AKD 233
L+T++ ++ +L P + ++ + FP HI
Sbjct: 349 HVNCDKLTTIIESSLNVL----EPAEYRKMFDRLSVFPP-----------SA--HIPTIL 391
Query: 234 LSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
LS + D + V+N++ + ++ + K+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Score = 33.3 bits (75), Expect = 0.090
Identities = 47/305 (15%), Positives = 79/305 (25%), Gaps = 97/305 (31%)
Query: 9 HLIIIDLRQ-FLHGEG----SEWLDLQETCQRTVYALCTTVPLV------STSHTGIT-- 55
H+ + E ++LD + + TT P S T
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWD 345
Query: 56 -YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ 114
+ + ++L ++ + + P + + + L+ VFP
Sbjct: 346 NWKHVNCDKLTTI--------IESSLNVLEPAEYRKM-----FDR-------LS-VFPPS 384
Query: 115 EQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP 174
IP L +I + D V L + +V K
Sbjct: 385 AHIPTIL------------------LSLIWFDVIKSDV--MVVVNKLHKYSLVE--KQPK 422
Query: 175 GFYTTRILSTMLSEAMRILQEGTSPKDL-DRLTKQFGFPVGAATLSDEVGID------VG 227
T I S L +++ E + + D F D +G
Sbjct: 423 E-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL---DQYFYSHIG 478
Query: 228 AHIAK--------DLSKTFGD-RF--------------SGGNLNVLNEMVEKGYLDF--K 262
H+ F D RF SG LN L ++ K Y +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICD 536
Query: 263 NKDGY 267
N Y
Sbjct: 537 NDPKY 541
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF,
actin-like-fold, glycoprotease, chaperone; 2.05A
{Salmonella typhimurium} PDB: 2gem_A 1okj_A
Length = 231
Score = 30.5 bits (69), Expect = 0.49
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 137 MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEG 196
M++L I DTA A +V L + + T+ + M+ E + G
Sbjct: 1 MRILAI--------DTATEACSVALWNNGTINAHFELCPREHTQRILPMVQEILA--ASG 50
Query: 197 TSPKDLDRL 205
S ++D L
Sbjct: 51 ASLNEIDAL 59
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70
nucleotide-binding fold, bacterial resuscitation BUT
non-culturable state, Y YJEE; 3.10A {Vibrio
parahaemolyticus}
Length = 213
Score = 29.7 bits (67), Expect = 0.71
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 151 DTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRL 205
DTA +V L VI+ + T+ + M+ E ++ + G + +DLD L
Sbjct: 8 DTATENCSVALLVNDQVISRSEVAPRDHTKKVLPMVDEVLK--EAGLTLQDLDAL 60
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.3
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 15/31 (48%)
Query: 6 MVIHLIIIDLRQFLHGEGSEWLDLQETCQRT 36
+V+ ++D SEW RT
Sbjct: 50 LVLSDKLVD-------TRSEW--------RT 65
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 28.3 bits (64), Expect = 2.5
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 19/60 (31%)
Query: 210 GFPVGAATLSDEV--GIDVGAHIAKDLSKTFGDRFSGGN-------LNVLNEMVEKGYLD 260
GFPV A + E+ VG+H T+ GGN + + L
Sbjct: 275 GFPVSAMLTTQEIASAFHVGSH-----GSTY-----GGNPLACAVAGAAFDIINTPEVLQ 324
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding;
2.20A {Homo sapiens}
Length = 581
Score = 28.4 bits (62), Expect = 2.6
Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 102 MGSNGLAMVFPLQEQIPIQTPHLIIGMHYF----------SPVDKMQLLEIITTEQTSQD 151
+G +G + P+ +IP + + D
Sbjct: 88 VGPSGAQFLGPVIVEIPHFAALRGKERELVVLRSENGDSWKEHFCDYTEDELNEILNGMD 147
Query: 152 TAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGF 211
+ K+ I +D P ++ ++S + ++ I EG Q F
Sbjct: 148 EVLDSPEDLEKKRICRIITRDFPQYFA--VVSRIKQDSNLIGPEGGVLSSTVVPQVQAVF 205
Query: 212 PVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
P GA T VG+ ++ + K G++
Sbjct: 206 PEGALTKRIRVGLQAQPMHSELVKKILGNK 235
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid
kinase, phosphoryl group transfer, arginine metabolism,
transferase; HET: ARG NLG; 2.75A {Thermotoga maritima}
SCOP: c.73.1.2
Length = 282
Score = 27.9 bits (63), Expect = 3.0
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 151 DTAASAVAVGLKQGKVVI-TVKDGPGFYT-TRILSTM-LSEAMRILQEGT 197
DTAA+ +A L K+++ T D G +++ST+ EA ++++GT
Sbjct: 182 DTAAAEIAKSLMAEKLILLT--DVDGVLKDGKLISTLTPDEAEELIRDGT 229
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 28.0 bits (63), Expect = 3.1
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 26/77 (33%)
Query: 180 RILSTMLSEAMRILQEGTSPKDLDRLTKQF--------GFPVGAA----------TLSDE 221
I + +A+++ + G +L ++ FPV + D
Sbjct: 11 EIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAAHYTPYKGDT 70
Query: 222 --------VGIDVGAHI 230
+ IDVG HI
Sbjct: 71 TVLKEGDYLKIDVGVHI 87
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
biosynthesis, FEED-BACK inhibition, hexamer,
transferase; HET: NLG ADP; 2.95A {Pseudomonas
aeruginosa} SCOP: c.73.1.2
Length = 300
Score = 27.9 bits (63), Expect = 3.2
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 151 DTAASAVAVGLKQGKVVI-T----VKDGPGFYTTRILSTM-LSEAMRILQEGT 197
D A VA LK K+++ T + D G ++L+ + + ++ +GT
Sbjct: 198 DLVAGKVAEALKAEKLMLLTNIAGLMDKQG----QVLTGLSTEQVNELIADGT 246
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 27.9 bits (63), Expect = 3.3
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 20/69 (28%)
Query: 210 GFPVGAATLSDEV---GIDVGAHIAKDLSKTFGDRFSGGN-------LNVLNEMVEKGYL 259
G VGA ++ +V ++ G H T+ GGN V E+ L
Sbjct: 253 GLSVGAFVINQKVASNSLEAGDH-----GSTY-----GGNPLVCAGVNAVFEIFKEEKIL 302
Query: 260 DFKNKDGYY 268
+ NK Y
Sbjct: 303 ENVNKLTPY 311
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
regulation, transfera cyanobacteria, transcription; HET:
NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Length = 321
Score = 28.0 bits (63), Expect = 3.7
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 151 DTAASAVAVGLKQGKVVI-T----VKDGPGFYTTRILSTMLSEAMRILQEGT 197
DT A +A L K+++ T + + P + I + ++ ++ +G
Sbjct: 209 DTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGI 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 4.9
Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 52/187 (27%)
Query: 86 QQMSERIYM-YTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIIT 144
+++ E Y + + G +F +I + + S +
Sbjct: 1682 KRIREN-YSAMIFETIVDGKLKTEKIFK---EINEHSTSYT----FRSEKGLLSA----- 1728
Query: 145 TEQTSQD--TAASAVAV------GLKQGKVVITVKDGPGF-------YTTRILSTMLSEA 189
T+ T Q T A GL F Y L++ L++
Sbjct: 1729 TQFT-QPALTLMEKAAFEDLKSKGLIPADAT--------FAGHSLGEYAA--LAS-LADV 1776
Query: 190 MRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNV 249
M S + L + G + A DE+G IA + + + +
Sbjct: 1777 M-------SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV----AASFSQEA 1825
Query: 250 LNEMVEK 256
L +VE+
Sbjct: 1826 LQYVVER 1832
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 27.3 bits (61), Expect = 4.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 162 KQGKVVITVKDGPGFYTTRIL 182
+ +T DGP YT ++L
Sbjct: 31 TPNTIALTFDDGPSEYTPQLL 51
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex,
regulation of arginine biosynthesis nitrogen metabolism,
kinase, transferase, transcription; HET: ARG ADP NLG
ATP; 2.51A {Arabidopsis thaliana}
Length = 298
Score = 26.8 bits (60), Expect = 7.0
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 151 DTAASAVAVGLKQGK-VVITVKDGPGFYT-----TRILSTM-LSEAMRILQEGT 197
DT A +A L K +++T D G + ++ + + +++++G
Sbjct: 197 DTVAGELAAALGAEKLILLT--DVAGILENKEDPSSLIKEIDIKGVKKMIEDGK 248
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides,
salvage of nucleosides and nucleotides, structural
genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Length = 141
Score = 26.2 bits (58), Expect = 7.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 210 GFPVGAATLSDEVGIDVGAHI 230
F VGAA L+ + + G ++
Sbjct: 32 KFQVGAALLTQDGKVYRGCNV 52
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 26.7 bits (59), Expect = 8.2
Identities = 9/72 (12%), Positives = 21/72 (29%)
Query: 138 QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT 197
++ + + ++ Q + P T ++ + E + G
Sbjct: 301 WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGL 360
Query: 198 SPKDLDRLTKQF 209
S + D L Q
Sbjct: 361 SQAEFDALMTQK 372
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Length = 258
Score = 26.7 bits (60), Expect = 8.6
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 151 DTAASAVAVGLKQGKVVIT----VKDGPGFYTTRILSTMLSEAMRILQEGT 197
D AA+A+A L ++++ + DG G RI ++A +++++G
Sbjct: 162 DQAATALAATLGADLILLSDVSGILDGKG---QRIAEMTAAKAEQLIEQGI 209
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine
metabolism, salvage, hydrolase; HET: THU; 1.99A
{Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A*
1ux1_A*
Length = 136
Score = 25.9 bits (57), Expect = 9.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 210 GFPVGAATLSDEVGIDVGAHIA 231
F VGAA L+ + + G +I
Sbjct: 23 KFQVGAALLTKDGKVYRGCNIE 44
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 26.6 bits (59), Expect = 9.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 151 DTAASAVAVGLKQGKVVIT 169
D A +++ +G+ G V I+
Sbjct: 274 DNAMASLGLGMAVGDVSIS 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,119,771
Number of extensions: 243855
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 48
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)