RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9059
(269 letters)
>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha
subunit, C-terminal domain {Pseudomonas fragi [TaxId:
296]}
Length = 124
Score = 65.6 bits (159), Expect = 3e-14
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 175 GFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDL 234
GF R+L +++ G +D++ ++FG+P+G A L D VGID G H +
Sbjct: 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60
Query: 235 SKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
++ F DR + ++ + E L KN G+Y
Sbjct: 61 AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFY 94
>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 58.7 bits (141), Expect = 5e-12
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 175 GFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFG--FPVGAATLSDEVGIDVGAHIAK 232
GF R+L L EA+R+ + G + K+ + G +P+G L D VG+D I
Sbjct: 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60
Query: 233 DLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
+ + LN++V + K +G+Y
Sbjct: 61 GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFY 96
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 60.7 bits (146), Expect = 7e-12
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 80 IPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQL 139
+ + + + G+H+F+PV M+L
Sbjct: 100 NLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANAT--TRQDRFAGLHFFNPVPVMKL 157
Query: 140 LEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP 174
+E+I T TSQ T S V GK ++ KD P
Sbjct: 158 VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTP 192
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 60.3 bits (145), Expect = 1e-11
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP 174
P +GMH+F+PV M L+E+I E++S A+ VA K GK I V D P
Sbjct: 134 PENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP 186
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha
subunit, C-terminal domain {Pseudomonas fragi [TaxId:
296]}
Length = 95
Score = 47.1 bits (112), Expect = 6e-08
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 180 RILSTMLSEAMRILQEGTSPKDLDR---LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
++ + E +R L++G + L GFP+ GA D +G+ +A
Sbjct: 10 WMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQ 69
Query: 234 LSKTFGDRFSGGNLNVLNEMVEKG 257
++ G + L EM + G
Sbjct: 70 YAE-LGALYHPTAK--LREMAKNG 90
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 33.0 bits (75), Expect = 0.026
Identities = 5/46 (10%), Positives = 11/46 (23%), Gaps = 1/46 (2%)
Query: 125 IIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170
I H + + I S++ +G +
Sbjct: 197 ITSYHPGCVPEMKGQVYIA-EGYASEEAVNKLYEIGKIARGKAFKM 241
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces
lividans [TaxId: 1916]}
Length = 192
Score = 27.9 bits (61), Expect = 0.94
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 164 GKVVITVKDGPGFYTTRILSTM 185
G V +T DGP T +L+ +
Sbjct: 5 GYVGLTFDDGPSGSTQSLLNAL 26
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 75
Score = 26.3 bits (58), Expect = 1.2
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 194 QEGTSPKDLDRLTKQFG-FPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLN 251
+E + ++L++ K F + +VG+ +G D S+T RF NL+ N
Sbjct: 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 59
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 26.4 bits (57), Expect = 3.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 162 KQGKVVITVKDGPGFYTTRILSTM 185
+ G V +T DGP +T ++L +
Sbjct: 12 QPGLVALTYDDGPFTFTPQLLDIL 35
>d2z8la2 d.15.6.1 (A:101-204) Superantigen-like protein SET3
{Staphylococcus aureus [TaxId: 1280]}
Length = 104
Score = 24.8 bits (54), Expect = 6.2
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 160 GLKQGKVVITVKDGPGFYT 178
K K+ + +KDG G+YT
Sbjct: 58 FPKDSKIKVIMKDG-GYYT 75
>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId:
562]}
Length = 89
Score = 24.4 bits (53), Expect = 7.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 152 TAASAVAVGLKQGKVVITVKDGPGFYTT 179
A+S ++G I+V T
Sbjct: 54 DASSGQVTLKEKGTTTISVISSDNQTAT 81
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus
subtilis [TaxId: 1423]}
Length = 130
Score = 24.6 bits (53), Expect = 8.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 210 GFPVGAATLSDEVGIDVGAHI 230
F VGAA L+ + + G +I
Sbjct: 23 KFQVGAALLTKDGKVYRGCNI 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 988,006
Number of extensions: 43730
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 13
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)