BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy906
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 62/79 (78%)
Query: 6 LVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIM 65
L K+P ++ + +VMILITG+HKAFALYKAIEEGVNHMWTVSAFQ HP T+
Sbjct: 178 LTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVF 237
Query: 66 ICDEDATQELRVKTVKYFK 84
+CDEDAT EL+VKTVKYFK
Sbjct: 238 VCDEDATLELKVKTVKYFK 256
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 83
+VMIL+ GS KA AL A+E VNHMWT+S Q+HP IM+CDE +T EL+VKT++YF
Sbjct: 198 EVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYF 255
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 83
+VMIL+ GS KA AL A+E VNHMWT+S Q+HP IM+CDE +T EL+VKT++YF
Sbjct: 198 EVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYF 255
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 75.5 bits (184), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 8 KIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMIC 67
K+P+ ++ + +V+I++ G +KA AL AIE+GVNHMWT+SA Q+H I++
Sbjct: 201 KVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVS 260
Query: 68 DEDATQELRVKTVKYF 83
D++AT EL+V TV+YF
Sbjct: 261 DKNATYELKVGTVEYF 276
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 14 KSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDAT 72
+ YS S P FS++ + TG+H AF Y A G W + + P ++ D T
Sbjct: 109 RRTYSVSFPMFSKIAVTGTGAHPAFK-YLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPT 166
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 33 GSHKAFALYKAIEEGVNHMWTVSAF 57
GS+ +LY+A+ +GV+ + VSAF
Sbjct: 272 GSNATSSLYQAVAKGVHQPFDVSAF 296
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 33 GSHKAFALYKAIEEGVNHMWTVSAF 57
GS+ +LY+A+ +GV+ + VSAF
Sbjct: 288 GSNATSSLYQAVAKGVHQPFDVSAF 312
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 33 GSHKAFALYKAIEEGVNHMWTVSAF 57
GS+ +LY+A+ +GV+ + VSAF
Sbjct: 302 GSNATSSLYQAVAKGVHQPFDVSAF 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,193,325
Number of Sequences: 62578
Number of extensions: 65359
Number of successful extensions: 136
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 8
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)