Query psy906
Match_columns 84
No_of_seqs 149 out of 1027
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:53:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00285 glucosamine-6-phospha 99.9 5.7E-22 1.2E-26 140.5 6.8 75 6-80 178-252 (253)
2 PRK12358 putative 6-phosphoglu 99.9 8.1E-22 1.8E-26 138.8 7.1 71 5-75 167-237 (239)
3 TIGR01198 pgl 6-phosphoglucono 99.8 3.5E-21 7.6E-26 135.3 6.9 71 5-75 162-233 (233)
4 COG0363 NagB 6-phosphogluconol 99.8 3.2E-21 7E-26 136.6 6.5 73 4-76 165-237 (238)
5 TIGR00502 nagB glucosamine-6-p 99.8 5.3E-21 1.2E-25 135.8 7.0 79 6-84 178-256 (259)
6 PLN02360 probable 6-phosphoglu 99.8 2.6E-20 5.6E-25 133.2 7.0 72 6-77 187-263 (268)
7 PRK00443 nagB glucosamine-6-ph 99.8 1.6E-19 3.6E-24 127.1 6.9 78 7-84 179-256 (261)
8 PRK09762 galactosamine-6-phosp 99.8 2.9E-19 6.4E-24 125.5 5.7 64 6-69 169-232 (232)
9 PRK02122 glucosamine-6-phospha 99.8 3.9E-19 8.4E-24 140.0 6.8 73 5-77 204-276 (652)
10 KOG3147|consensus 99.7 5.5E-18 1.2E-22 120.4 6.3 73 4-77 177-250 (252)
11 cd01399 GlcN6P_deaminase GlcN6 99.7 3E-17 6.6E-22 113.3 6.1 69 7-75 164-232 (232)
12 KOG3148|consensus 99.7 9.1E-18 2E-22 117.0 2.7 81 4-84 176-256 (273)
13 cd01400 6PGL 6PGL: 6-Phosphogl 99.6 2.8E-16 6.1E-21 109.4 5.9 61 7-67 158-219 (219)
14 cd00458 SugarP_isomerase Sugar 99.2 1.4E-11 3E-16 82.9 4.6 53 13-67 117-169 (169)
15 PF01182 Glucosamine_iso: Gluc 99.2 2.5E-11 5.5E-16 83.4 5.1 40 6-45 160-199 (199)
16 PF04198 Sugar-bind: Putative 96.0 0.016 3.4E-07 41.3 5.0 52 11-75 202-253 (255)
17 PRK15418 transcriptional regul 95.8 0.023 5E-07 41.8 5.2 54 11-77 262-315 (318)
18 COG2390 DeoR Transcriptional r 95.7 0.024 5.1E-07 42.1 4.9 54 11-77 265-318 (321)
19 PF01935 DUF87: Domain of unkn 58.7 16 0.00035 24.7 3.5 51 12-62 12-63 (229)
20 PF14826 FACT-Spt16_Nlob: FACT 43.4 57 0.0012 21.8 4.2 46 27-75 30-83 (163)
21 COG4279 Uncharacterized conser 41.0 5.6 0.00012 29.1 -1.0 42 7-48 59-100 (266)
22 PF11019 DUF2608: Protein of u 39.2 52 0.0011 23.4 3.7 35 27-71 154-188 (252)
23 PF01380 SIS: SIS domain SIS d 37.9 48 0.001 19.9 3.0 20 21-40 2-21 (131)
24 PF02456 Adeno_IVa2: Adenoviru 34.0 53 0.0012 25.1 3.1 32 29-68 93-124 (369)
25 COG2984 ABC-type uncharacteriz 30.4 79 0.0017 23.8 3.5 41 33-76 266-306 (322)
26 COG3596 Predicted GTPase [Gene 30.2 51 0.0011 24.6 2.4 45 28-72 44-97 (296)
27 COG3748 Predicted membrane pro 28.9 63 0.0014 24.8 2.8 42 19-62 182-226 (407)
28 KOG4748|consensus 28.4 54 0.0012 25.1 2.4 12 61-72 176-187 (364)
29 PF10078 DUF2316: Uncharacteri 28.1 46 0.001 20.4 1.7 19 50-68 71-89 (89)
30 COG4019 Uncharacterized protei 27.5 81 0.0018 21.0 2.8 26 20-45 32-57 (156)
31 PF11576 DUF3236: Protein of u 26.6 66 0.0014 21.7 2.3 28 19-46 30-57 (154)
32 KOG1268|consensus 25.0 99 0.0021 25.3 3.4 58 10-69 336-411 (670)
33 PF10767 DUF2593: Protein of u 25.0 70 0.0015 21.4 2.2 21 28-48 102-122 (144)
34 PF14189 DUF4312: Domain of un 25.0 94 0.002 19.0 2.6 37 26-62 5-44 (85)
35 PRK14738 gmk guanylate kinase; 23.8 1.8E+02 0.004 19.5 4.2 47 29-75 19-72 (206)
36 PF07040 DUF1326: Protein of u 22.1 45 0.00098 22.9 0.9 27 51-77 51-77 (184)
37 PF09162 Tap-RNA_bind: Tap, RN 22.0 2E+02 0.0043 17.5 4.3 41 35-76 19-61 (88)
38 PF13587 DJ-1_PfpI_N: N-termin 21.8 53 0.0011 16.8 0.9 12 25-36 1-12 (38)
39 COG1100 GTPase SAR1 and relate 21.2 1.9E+02 0.0041 18.9 3.8 34 24-57 6-39 (219)
40 cd05013 SIS_RpiR RpiR-like pro 20.5 1.2E+02 0.0027 18.0 2.6 22 18-39 7-28 (139)
41 PF04392 ABC_sub_bind: ABC tra 20.2 1.3E+02 0.0028 21.2 3.0 43 32-76 237-279 (294)
No 1
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=99.86 E-value=5.7e-22 Score=140.47 Aligned_cols=75 Identities=40% Similarity=0.597 Sum_probs=70.6
Q ss_pred CCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhhhhhh
Q psy906 6 LVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTV 80 (84)
Q Consensus 6 ~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~~~~~ 80 (84)
.+++|++|||||++.|++|++|+|+++|++|+++|+++++++.+.++|+|+|+.|++++||+|++||+.|..+|.
T Consensus 178 ~~~~p~~riTlt~~~i~~a~~i~l~~~G~~K~~~l~~~l~~~~~~~~Pas~l~~~~~~~~~~D~~Aa~~l~~~~~ 252 (253)
T PTZ00285 178 ISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGVTHMCPASALQMHPAAVLCLDEDATLELKVKTT 252 (253)
T ss_pred cCCCCCccEEcCHHHHHhCCEEEEEecCHHHHHHHHHHhcCCCCCccchHHhccCCCEEEEEcHHHHhhhhhccc
Confidence 478899999999999999999999999999999999999988777899999999999999999999999988764
No 2
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=8.1e-22 Score=138.82 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=67.6
Q ss_pred CCCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhh
Q psy906 5 GLVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 75 (84)
Q Consensus 5 ~~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l 75 (84)
+.+++|++|||||++.|++||+|+|+++|++|+++|+++++++++.++|+|+++.|++++||+|++|++.|
T Consensus 167 ~~~~~P~~riTlt~~~i~~A~~i~ll~~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~aa~~l 237 (239)
T PRK12358 167 DFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPVTEDVPASILQLHPNLTVILDEAAAAEL 237 (239)
T ss_pred CcccCCCeeEEcchHHHHhCCEEEEEEeCHHHHHHHHHHHcCCCCCCcCcHHhccCCCEEEEECHHHHhhc
Confidence 46889999999999999999999999999999999999999988889999999999999999999999876
No 3
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=99.84 E-value=3.5e-21 Score=135.26 Aligned_cols=71 Identities=23% Similarity=0.197 Sum_probs=65.4
Q ss_pred CCCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHh-cCCcccccccceecCCcEEEEEeHHHHhhh
Q psy906 5 GLVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIE-EGVNHMWTVSAFQMHPCTIMICDEDATQEL 75 (84)
Q Consensus 5 ~~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~-~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l 75 (84)
+.+++|++|||||++.|++|++|+|+++|++|+++|+++++ ++.+.++|+++++.|++++||+|++||+.|
T Consensus 162 ~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~~~~~Pas~l~~~~~~~~~~D~~Aa~~l 233 (233)
T TIGR01198 162 KSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALAVEAEPYPLPAAGVLHSGKTLWLLDYAAARKL 233 (233)
T ss_pred CCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCCcccCCHhHcCCCCcEEEEEChHhhhcC
Confidence 35788999999999999999999999999999999999998 566668999999999999999999999764
No 4
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.2e-21 Score=136.56 Aligned_cols=73 Identities=30% Similarity=0.448 Sum_probs=69.1
Q ss_pred CCCCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhh
Q psy906 4 AGLVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 76 (84)
Q Consensus 4 ~~~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~ 76 (84)
++.+++|++|||||++.|++|++|+|+|+|++|+++++++++|+.+..||+|.|+.|++++||+|++|++.|.
T Consensus 165 ~~~~~~P~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~~~~~Pas~l~~~~~~~~~~d~~A~~~l~ 237 (238)
T COG0363 165 GDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVTELYPASILQLHPNVTWFLDEEAASLLK 237 (238)
T ss_pred CCCCCCCcceEEeCHHHHhcCCeEEEEEcCchHHHHHHHHhcCCCcccccHHHHhcCCCeEEEEchHHhhhcc
Confidence 3568999999999999999999999999999999999999999998889999999999999999999999774
No 5
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=99.84 E-value=5.3e-21 Score=135.78 Aligned_cols=79 Identities=48% Similarity=0.818 Sum_probs=73.7
Q ss_pred CCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhhhhhhcccC
Q psy906 6 LVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 84 (84)
Q Consensus 6 ~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~~~~~~~~~ 84 (84)
.+.+|++|||||++.|++|++|+|+++|++|+++|+++++|+.+..+|+++++.|++++||+|++||+.+..++.+|++
T Consensus 178 ~~~~p~~riTlt~~~i~~a~~vi~~~~G~~Ka~al~~al~~~~~~~~Pas~l~~~~~~~~~~d~~Aa~~l~~~~~~~~~ 256 (259)
T TIGR00502 178 VNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGVNHMWTISALQLHKHAIVVCDENATQELKVKTVEYFN 256 (259)
T ss_pred CCCCCCceEecCHHHHhhCCEEEEEEcCHHHHHHHHHHHcCCCCCccchHHhccCCCEEEEEcHHHHhhhhHHHHHHhh
Confidence 3567899999999999999999999999999999999999988889999999999999999999999999888888763
No 6
>PLN02360 probable 6-phosphogluconolactonase
Probab=99.82 E-value=2.6e-20 Score=133.19 Aligned_cols=72 Identities=21% Similarity=0.109 Sum_probs=65.5
Q ss_pred CCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHh----cCCcccccccceecCC-cEEEEEeHHHHhhhhh
Q psy906 6 LVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIE----EGVNHMWTVSAFQMHP-CTIMICDEDATQELRV 77 (84)
Q Consensus 6 ~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~----~~~~~~~Pas~l~~h~-~~~~~~D~~Aa~~l~~ 77 (84)
.+++|++|||||++.|++|++|+|+++|++|+++|++++. ++.+.++|+++|+.|+ +++||+|++|++.|..
T Consensus 187 ~~~~p~~RITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~~~~~Pas~l~~~~~~~~w~~D~~Aa~~l~~ 263 (268)
T PLN02360 187 SPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPDAPSLPARMVQPTKGKLVWFLDKPAASKLDG 263 (268)
T ss_pred CCCCCCceEEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCCcccCChhhhcCCCCcEEEEECHHHHhhCcc
Confidence 4778999999999999999999999999999999999995 5555689999999885 8999999999998864
No 7
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=99.79 E-value=1.6e-19 Score=127.14 Aligned_cols=78 Identities=38% Similarity=0.617 Sum_probs=74.1
Q ss_pred CCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhhhhhhcccC
Q psy906 7 VKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 84 (84)
Q Consensus 7 ~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~~~~~~~~~ 84 (84)
+.+|++|||||++.|++|++++++++|++|++++++++.|+.+.++|+++++.|++++||+|++||+.|..+++.||.
T Consensus 179 ~~~~~~~itl~l~~L~~a~~vi~~a~G~~K~~ai~~al~~~~~~~~Pa~~l~~~~~~~~~~d~~aa~~l~~~~~~~~~ 256 (261)
T PRK00443 179 EQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPVNHMWPASILQLHPKATLVLDEAAASELKVKTVKYFT 256 (261)
T ss_pred cCCCCeeEEcCHHHHHhcCeEEEEecChHHHHHHHHHHhCCCCCCcchHHHhhCCCEEEEEcHHHHhHHHHHHHHHhh
Confidence 578899999999999999999999999999999999999988889999999999999999999999999999999873
No 8
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=99.78 E-value=2.9e-19 Score=125.54 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=60.9
Q ss_pred CCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeH
Q psy906 6 LVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDE 69 (84)
Q Consensus 6 ~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~ 69 (84)
.+++|++|||||++.|++||+|+|+++|++|+++|+++++|+.+.++|+|+||.|+++++++|+
T Consensus 169 ~~~~p~~riTlt~~~i~~A~~i~llv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~d~ 232 (232)
T PRK09762 169 AGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLIDR 232 (232)
T ss_pred CCCCCCccEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHHcCCCCCcccHHHHhhCCCEEEEecC
Confidence 4778999999999999999999999999999999999999988889999999999999999995
No 9
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=99.78 E-value=3.9e-19 Score=139.96 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=69.3
Q ss_pred CCCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhhh
Q psy906 5 GLVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 77 (84)
Q Consensus 5 ~~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~~ 77 (84)
+.+.+|++|||||++.|++|++|+|+++|++|+++|+++++|+.+..+|+|+|+.|++++||+|++||+.|++
T Consensus 204 ~~~~~P~~rITmgi~~I~~Ar~Iilla~G~~Ka~iv~~~l~g~~~~~~PAs~Lq~h~~~~~~lD~~AA~~Ltr 276 (652)
T PRK02122 204 GEENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEISDEVPASYLQEHPNATFVLDLAAASELTR 276 (652)
T ss_pred CCCCCCCceEEeCHHHHHhhCeEEEEEeCHHHHHHHHHHHhCCCCCccchHHhccCCCEEEEEcHHHhhhccc
Confidence 4588999999999999999999999999999999999999998888999999999999999999999998865
No 10
>KOG3147|consensus
Probab=99.73 E-value=5.5e-18 Score=120.41 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCCCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceec-CCcEEEEEeHHHHhhhhh
Q psy906 4 AGLVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQM-HPCTIMICDEDATQELRV 77 (84)
Q Consensus 4 ~~~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~-h~~~~~~~D~~Aa~~l~~ 77 (84)
.+.|++|+.|||+|+|.|+.|+++.|+|+|+.|+++++.+++... ..+|++++.. .++++||+|++|+++++.
T Consensus 177 tdSPkpPp~RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~~-~~lPaa~V~~~~~~l~WflD~~A~~~l~~ 250 (252)
T KOG3147|consen 177 TDSPKPPPKRITLTLPVINHAKNVAFVVCGASKAEIVKAILEDKE-KKLPAALVNPAKGKLVWFLDDDAASKLPV 250 (252)
T ss_pred CCCCCCCCccEEEehHHhhhhhceEEEEeCcchhHhHHHHHhccc-ccCCchheeccCCeEEEEEchHHhcCCCC
Confidence 367999999999999999999999999999999999999998754 4799999995 567999999999998864
No 11
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=99.70 E-value=3e-17 Score=113.35 Aligned_cols=69 Identities=30% Similarity=0.392 Sum_probs=65.2
Q ss_pred CCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhh
Q psy906 7 VKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 75 (84)
Q Consensus 7 ~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l 75 (84)
+.+|++|||||++.|+++++++++++|++|+++++.++.|+.+.++|+++++.|++++||+|++||+.|
T Consensus 164 ~~~~~~~itltl~~l~~a~~vi~~a~G~~K~~ai~~al~~~~~~~~P~~~l~~~~~~~~~~d~~aa~~~ 232 (232)
T cd01399 164 EDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPVTEECPASILQLHPNVTVILDEAAASEL 232 (232)
T ss_pred CCCCCceEecCHHHHhhCCEEEEEeCChHHHHHHHHHHhCCCCCCcchHHHhhCCCeEEEEcHHHhccC
Confidence 578899999999999999999999999999999999999988889999999999999999999999754
No 12
>KOG3148|consensus
Probab=99.69 E-value=9.1e-18 Score=116.95 Aligned_cols=81 Identities=67% Similarity=0.988 Sum_probs=78.4
Q ss_pred CCCCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhhhhhhccc
Q psy906 4 AGLVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 83 (84)
Q Consensus 4 ~~~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~~~~~~~~ 83 (84)
+++.++|++++|.|..+.|.||+|+++++|+.|+-+|.++++..++..|.+|..|.|+++++++|++|.-+|..||++||
T Consensus 176 gd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegvnhmwtvsafqqh~~t~ficdedatlelkvktvkyf 255 (273)
T KOG3148|consen 176 GDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTTFICDEDATLELKVKTVKYF 255 (273)
T ss_pred CccccCccceeEeeeeeeeecceEEEEEeccHHHHHHHHHHHhcccceeehhhHhhCCceEEEecCCceeEEEeeehHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy906 84 K 84 (84)
Q Consensus 84 ~ 84 (84)
+
T Consensus 256 k 256 (273)
T KOG3148|consen 256 K 256 (273)
T ss_pred H
Confidence 5
No 13
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=99.64 E-value=2.8e-16 Score=109.38 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecC-CcEEEEE
Q psy906 7 VKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMH-PCTIMIC 67 (84)
Q Consensus 7 ~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h-~~~~~~~ 67 (84)
+++|++|||||++.|++|++|+|+++|++|+++|+++++|+.+.++|+++++.| .++.||+
T Consensus 158 ~~~p~~RiTlt~~~i~~a~~i~ll~~G~~K~~~l~~~l~~~~~~~~Pas~l~~~~~~~~w~~ 219 (219)
T cd01400 158 PKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPDPEELPAARVLPRPGEVLWFL 219 (219)
T ss_pred CCCCCccEEecHHHHhcCCeEEEEEeChhHHHHHHHHHcCCCCCCCChhhhcCCCCcEEEeC
Confidence 568999999999999999999999999999999999999987778999999988 5577873
No 14
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=99.22 E-value=1.4e-11 Score=82.86 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=47.4
Q ss_pred eEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEE
Q psy906 13 EKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMIC 67 (84)
Q Consensus 13 riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~ 67 (84)
-+=||+. ++|++++|+|+|++|+++|+++++|+.+.++|++.++.|++++||+
T Consensus 117 l~lLG~G--~~a~~i~~~~~G~~Ka~~l~~~~~~~~~~~~Pas~l~~~~~~~~~~ 169 (169)
T cd00458 117 LAVDGAG--YRAGTVIVLVDGRKKVDYLCQNTEPGVIENGIFADIRGKEKDIVIV 169 (169)
T ss_pred EEEECcC--ccccEEEEEecChhHHHHHHHHhcCCCCCcCCHHHhccCCCeEEeC
Confidence 3445666 8999999999999999999999998877799999999999999985
No 15
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=99.20 E-value=2.5e-11 Score=83.43 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=36.6
Q ss_pred CCCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHh
Q psy906 6 LVKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIE 45 (84)
Q Consensus 6 ~~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~ 45 (84)
.+++|++|||||++.|++|++|+|+++|++|+++|+++++
T Consensus 160 ~~~~p~~riTlt~~~i~~a~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 160 SPKPPPQRITLTLPTIMSARKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp CTTSSSEEEEE-HHHHHTSSEEEEEEESGGGHHHHHHHH-
T ss_pred CCCCCcceEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHhC
Confidence 4889999999999999999999999999999999999885
No 16
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=96.03 E-value=0.016 Score=41.31 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=42.0
Q ss_pred CeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhh
Q psy906 11 RTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 75 (84)
Q Consensus 11 ~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l 75 (84)
...|++++..+.+.++++.++.|.+|++++..++.+..- -++++|++.|..|
T Consensus 202 ~r~igi~l~~L~~i~~~I~va~G~~K~~aI~aALr~g~i-------------~~LItDe~tA~~l 253 (255)
T PF04198_consen 202 DRTIGISLEDLRKIPRVIAVAGGEEKAEAILAALRGGYI-------------NVLITDESTARAL 253 (255)
T ss_dssp GGBSB--HHHHHTSSEEEEEE-SGGGHHHHHHHHHTTST-------------SEEEEEHHHHHHH
T ss_pred CceeecCHHHHhCCCcEEEEcCchhhHHHHHHHHhcCCC-------------CEEEECHHHHHHH
Confidence 457888889999999999999999999999999998631 2468899998876
No 17
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=95.83 E-value=0.023 Score=41.84 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=45.3
Q ss_pred CeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhhh
Q psy906 11 RTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 77 (84)
Q Consensus 11 ~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~~ 77 (84)
...|.+++..+.+.++++.++.|.+|++++..++.|..- -++++|++.|..|..
T Consensus 262 ~r~igi~le~Lk~ip~~I~vA~G~~K~~Ai~aALrgg~i-------------~~LITDe~tA~~lL~ 315 (318)
T PRK15418 262 NELIGLPLSSLKTIPTVIGVAGGEEKAEAIIAALKGGYI-------------NALVTDEKTARAILA 315 (318)
T ss_pred cceecCCHHHHcCCCCEEEEecCHHHHHHHHHHHhcCCC-------------CEEEECHHHHHHHHH
Confidence 456788889999999999999999999999999998621 246889999987743
No 18
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=95.72 E-value=0.024 Score=42.14 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=46.1
Q ss_pred CeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhhh
Q psy906 11 RTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 77 (84)
Q Consensus 11 ~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~~ 77 (84)
..-|++++..|.+..+++.++.|.+|++++..++.|..- .+++.|+..|..|-.
T Consensus 265 ~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~~-------------n~LITDe~tA~~lL~ 318 (321)
T COG2390 265 DRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGYI-------------NVLITDEATAEALLE 318 (321)
T ss_pred CceecCCHHHHhcCCcEEEEeCCcccHHHHHHHHhCCCC-------------CEEEeCHHHHHHHHh
Confidence 567889999999999999999999999999999998631 346889999987643
No 19
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=58.66 E-value=16 Score=24.73 Aligned_cols=51 Identities=20% Similarity=0.019 Sum_probs=36.1
Q ss_pred eeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCC-cccccccceecCCc
Q psy906 12 TEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGV-NHMWTVSAFQMHPC 62 (84)
Q Consensus 12 ~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~-~~~~Pas~l~~h~~ 62 (84)
..+.+.+..+.+-+..+|-.||.+|...++.++++-. ....+.-.+-.|++
T Consensus 12 v~v~l~~~~l~~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 12 VPVYLDLNKLFNRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred ceEEeeHHHhccceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 4577877778887778899999999999998887643 22344444444443
No 20
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=43.37 E-value=57 Score=21.78 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=28.8
Q ss_pred EEEEEcCh-------hHHHHHHHHHhcCCccccccccee-cCCcEEEEEeHHHHhhh
Q psy906 27 VMILITGS-------HKAFALYKAIEEGVNHMWTVSAFQ-MHPCTIMICDEDATQEL 75 (84)
Q Consensus 27 v~~lv~G~-------~Ka~~l~~~l~~~~~~~~Pas~l~-~h~~~~~~~D~~Aa~~l 75 (84)
.+++++|. .|..+++-+|-| .++|-+++- ....+++++.+-=+..|
T Consensus 30 al~i~~G~~~e~~~Y~Ks~aLq~WLlG---YEfpdTiiv~tk~~i~~ltS~KKa~~L 83 (163)
T PF14826_consen 30 ALVIAVGKADEDNPYSKSTALQTWLLG---YEFPDTIIVFTKKKIHFLTSKKKAKFL 83 (163)
T ss_dssp EEEEEE-S--TTSTT-HHHHHHHHHHS---S--SSEEEEEETTEEEEEEEHHHHHCC
T ss_pred EEEEEeCCcccCccchhHHHHHHHHhc---ccHhhhhhhhcCCEEEEEeCHHHHHHH
Confidence 34677776 799999999988 368888865 34456666665544433
No 21
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=40.97 E-value=5.6 Score=29.06 Aligned_cols=42 Identities=10% Similarity=-0.107 Sum_probs=36.5
Q ss_pred CCCCCeeEEEcchhhcccceEEEEEcChhHHHHHHHHHhcCC
Q psy906 7 VKIPRTEKSLYSSSSPHFSQVMILITGSHKAFALYKAIEEGV 48 (84)
Q Consensus 7 ~~~P~~riTlt~~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~~ 48 (84)
.+.+++.+|++++.+...+--.++.+=+.|+..+++++.|+.
T Consensus 59 S~~~pY~vti~~~~~s~e~w~~vi~~ia~ka~~aakLL~gem 100 (266)
T COG4279 59 SEEEPYVVTIGIPTFSKEQWREVIATIAQKANYAAKLLSGEM 100 (266)
T ss_pred CCCCCeEEEEecCCCcHHHHHHHHHHHHhhhHHHHHHhcCCC
Confidence 346789999999999988888888888899999999999874
No 22
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=39.16 E-value=52 Score=23.41 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=25.8
Q ss_pred EEEEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHH
Q psy906 27 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDA 71 (84)
Q Consensus 27 v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~A 71 (84)
=++.++|.+|.++|...|..- ..+|+.++|+|...
T Consensus 154 GIlft~~~~KG~~L~~fL~~~----------~~~pk~IIfIDD~~ 188 (252)
T PF11019_consen 154 GILFTGGQDKGEVLKYFLDKI----------NQSPKKIIFIDDNK 188 (252)
T ss_pred CeEEeCCCccHHHHHHHHHHc----------CCCCCeEEEEeCCH
Confidence 357889999999999998752 23556677888544
No 23
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=37.87 E-value=48 Score=19.95 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.2
Q ss_pred hcccceEEEEEcChhHHHHH
Q psy906 21 SPHFSQVMILITGSHKAFAL 40 (84)
Q Consensus 21 I~~A~~v~~lv~G~~Ka~~l 40 (84)
|.++++|+++..|....-+.
T Consensus 2 i~~~~~i~i~G~G~s~~~A~ 21 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQ 21 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHH
T ss_pred CCCCCEEEEEEcchHHHHHH
Confidence 67899999999999987553
No 24
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=34.01 E-value=53 Score=25.12 Aligned_cols=32 Identities=28% Similarity=0.162 Sum_probs=23.5
Q ss_pred EEEcChhHHHHHHHHHhcCCcccccccceecCCcEEEEEe
Q psy906 29 ILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICD 68 (84)
Q Consensus 29 ~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D 68 (84)
.--||.+|...+|.++.+. ++++-|.+++|+-
T Consensus 93 YGPTG~GKSqLlRNLis~~--------lI~P~PETVfFIt 124 (369)
T PF02456_consen 93 YGPTGSGKSQLLRNLISCQ--------LIQPPPETVFFIT 124 (369)
T ss_pred ECCCCCCHHHHHHHhhhcC--------cccCCCCceEEEC
Confidence 3448999999999988754 4666667666653
No 25
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=30.43 E-value=79 Score=23.84 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhh
Q psy906 33 GSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 76 (84)
Q Consensus 33 G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~ 76 (84)
|..=++++.++|.|..+.++|.+.... ..+++.+.++.++.
T Consensus 266 G~qtg~~v~~ILkG~~p~dip~~~~~~---~~~~iN~~aa~~lG 306 (322)
T COG2984 266 GKQTGEMVVKILKGKKPKDIPVSVAAG---FKLVINLKAAKKLG 306 (322)
T ss_pred HHHHHHHHHHHHcCCCccccCcccccc---ceEEEcHHHHHHhC
Confidence 444567899999998878899887654 66889999998763
No 26
>COG3596 Predicted GTPase [General function prediction only]
Probab=30.19 E-value=51 Score=24.60 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=29.4
Q ss_pred EEEEcChhHHHHHHHHHhcCCcc--ccccc-------ceecCCcEEEEEeHHHH
Q psy906 28 MILITGSHKAFALYKAIEEGVNH--MWTVS-------AFQMHPCTIMICDEDAT 72 (84)
Q Consensus 28 ~~lv~G~~Ka~~l~~~l~~~~~~--~~Pas-------~l~~h~~~~~~~D~~Aa 72 (84)
+.=.||.+|...+.++|.|+..+ +.|+. +...|.+...+.|-.--
T Consensus 44 i~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~ 97 (296)
T COG3596 44 LMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGL 97 (296)
T ss_pred EecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCc
Confidence 45579999999999999876432 34433 23346666667775443
No 27
>COG3748 Predicted membrane protein [Function unknown]
Probab=28.93 E-value=63 Score=24.84 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=31.7
Q ss_pred hhhcccceEEEEEcChhHHHHHHHHHhcC-Ccccccccceec--CCc
Q psy906 19 SSSPHFSQVMILITGSHKAFALYKAIEEG-VNHMWTVSAFQM--HPC 62 (84)
Q Consensus 19 ~~I~~A~~v~~lv~G~~Ka~~l~~~l~~~-~~~~~Pas~l~~--h~~ 62 (84)
.+||.+.-.++++.+..| +|..++.|. +++.++....|+ |++
T Consensus 182 aTiMsaNVF~vIiPnQk~--vVa~l~Agr~pDP~~gk~akqRS~HNn 226 (407)
T COG3748 182 ATIMSANVFFVIIPNQKI--VVADLEAGRDPDPKLGKTAKQRSRHNN 226 (407)
T ss_pred HhhheeeEEEEEecChHH--HHHHHHcCCCCCcchhhhhhhhhhhcc
Confidence 578888888888888666 788888874 566888887764 654
No 28
>KOG4748|consensus
Probab=28.38 E-value=54 Score=25.15 Aligned_cols=12 Identities=33% Similarity=0.161 Sum_probs=9.5
Q ss_pred CcEEEEEeHHHH
Q psy906 61 PCTIMICDEDAT 72 (84)
Q Consensus 61 ~~~~~~~D~~Aa 72 (84)
.+.+|++|.+|-
T Consensus 176 AeWIWWlD~DAl 187 (364)
T KOG4748|consen 176 AEWIWWLDQDAL 187 (364)
T ss_pred CcEEEEecccch
Confidence 357899999984
No 29
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.09 E-value=46 Score=20.43 Aligned_cols=19 Identities=16% Similarity=0.154 Sum_probs=15.3
Q ss_pred ccccccceecCCcEEEEEe
Q psy906 50 HMWTVSAFQMHPCTIMICD 68 (84)
Q Consensus 50 ~~~Pas~l~~h~~~~~~~D 68 (84)
..+|-|.|..++.=.||+|
T Consensus 71 eP~PfS~L~g~~~~yWFl~ 89 (89)
T PF10078_consen 71 EPVPFSALKGDPADYWFLN 89 (89)
T ss_pred CCCCeeeeCCCcccccCCC
Confidence 3589999998887778875
No 30
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.54 E-value=81 Score=21.04 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=22.5
Q ss_pred hhcccceEEEEEcChhHHHHHHHHHh
Q psy906 20 SSPHFSQVMILITGSHKAFALYKAIE 45 (84)
Q Consensus 20 ~I~~A~~v~~lv~G~~Ka~~l~~~l~ 45 (84)
-|-+|+++++.-.-+.|-.++.+++.
T Consensus 32 yi~sA~r~vV~t~N~~K~~aindvlr 57 (156)
T COG4019 32 YIVSAKRIVVATNNQKKFKAINDVLR 57 (156)
T ss_pred HHhccceEEEecCCHHHHHHHHHHHH
Confidence 46789999999999999999998884
No 31
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=26.59 E-value=66 Score=21.71 Aligned_cols=28 Identities=4% Similarity=0.067 Sum_probs=18.8
Q ss_pred hhhcccceEEEEEcChhHHHHHHHHHhc
Q psy906 19 SSSPHFSQVMILITGSHKAFALYKAIEE 46 (84)
Q Consensus 19 ~~I~~A~~v~~lv~G~~Ka~~l~~~l~~ 46 (84)
.-|.+|++|++.-.-..|-.++.+++..
T Consensus 30 ~~I~nakkIvV~t~N~kKf~vi~~il~~ 57 (154)
T PF11576_consen 30 EYILNAKKIVVATNNEKKFKVINDILSK 57 (154)
T ss_dssp HHHHH-S-EEE----HHHHHHHHHHHHH
T ss_pred HHHhcCceEEEecCCchHhHHHHHHHHH
Confidence 3578999999999999999999999964
No 32
>KOG1268|consensus
Probab=25.00 E-value=99 Score=25.34 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCeeEEEc-----chhhcccceEEEEEcChhHHHH--HHHHHhcCCcccccccc------eec-----CCcEEEEEeH
Q psy906 10 PRTEKSLY-----SSSSPHFSQVMILITGSHKAFA--LYKAIEEGVNHMWTVSA------FQM-----HPCTIMICDE 69 (84)
Q Consensus 10 P~~riTlt-----~~~I~~A~~v~~lv~G~~Ka~~--l~~~l~~~~~~~~Pas~------l~~-----h~~~~~~~D~ 69 (84)
+..++.+| ++.|.++|+++|++.|.+=..+ .|.+++.- .++|++. +.+ ..++.+|+.+
T Consensus 336 ~~~~V~LGGlk~~l~~irr~rRli~iacgtSyhs~~A~R~ilEEL--~eiPV~vElAsDflDR~~pifRdDvc~FvSq 411 (670)
T KOG1268|consen 336 PLNKVVLGGLKDYLPEIRRCRRLIMVACGTSYHSALATRPILEEL--SEIPVSVELASDFLDRNTPIFRDDVCFFVSQ 411 (670)
T ss_pred ccceeeecCCcchhhhhhhccccEEEEecchHHHHHHHHHHHHHH--hcCCeeeehhhhhHhcCCCceeccEEEEEec
Confidence 34456665 6889999999999999876554 46677642 2355553 332 3467788754
No 33
>PF10767 DUF2593: Protein of unknown function (DUF2593); InterPro: IPR019703 This entry represents proteins that appear to be restricted to Enterobacteriaceae. Some members are annotated as YbjO, however there is currently no known function.
Probab=25.00 E-value=70 Score=21.41 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=18.1
Q ss_pred EEEEcChhHHHHHHHHHhcCC
Q psy906 28 MILITGSHKAFALYKAIEEGV 48 (84)
Q Consensus 28 ~~lv~G~~Ka~~l~~~l~~~~ 48 (84)
+|-+.|++++++++..+-...
T Consensus 102 iFsi~Ge~~~eIlh~LllQKl 122 (144)
T PF10767_consen 102 IFSIEGESGREILHSLLLQKL 122 (144)
T ss_pred eEEEcCCChHHHHHHHHHhhc
Confidence 688999999999999887653
No 34
>PF14189 DUF4312: Domain of unknown function (DUF4312)
Probab=24.97 E-value=94 Score=18.98 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=24.6
Q ss_pred eEEEEEcChhHHHHHHHHHhc---CCcccccccceecCCc
Q psy906 26 QVMILITGSHKAFALYKAIEE---GVNHMWTVSAFQMHPC 62 (84)
Q Consensus 26 ~v~~lv~G~~Ka~~l~~~l~~---~~~~~~Pas~l~~h~~ 62 (84)
.+.+-..|+.|++|+.++|.. ..-.+.+--+|+..|.
T Consensus 5 tv~vsGkG~tKe~Afa~als~vq~~v~~~~~~vlLrIEP~ 44 (85)
T PF14189_consen 5 TVTVSGKGETKEEAFAKALSQVQKTVLKETNGVLLRIEPV 44 (85)
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 456777899999999999964 2222345555665554
No 35
>PRK14738 gmk guanylate kinase; Provisional
Probab=23.77 E-value=1.8e+02 Score=19.52 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=27.6
Q ss_pred EEEcChhHHHHHHHHHhcCCccccccccee-------cCCcEEEEEeHHHHhhh
Q psy906 29 ILITGSHKAFALYKAIEEGVNHMWTVSAFQ-------MHPCTIMICDEDATQEL 75 (84)
Q Consensus 29 ~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l~-------~h~~~~~~~D~~Aa~~l 75 (84)
.=.+|.+|..+++.+.+......++.+.-. .++.-.+|+|.+.-...
T Consensus 19 ~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~ 72 (206)
T PRK14738 19 SGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREM 72 (206)
T ss_pred ECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHH
Confidence 345788899999988754322234443322 12335678888775443
No 36
>PF07040 DUF1326: Protein of unknown function (DUF1326); InterPro: IPR009758 This family consists of several hypothetical bacterial proteins, which seem to be found exclusively in Rhizobium and Ralstonia species. Members of this family are typically around 210 residues in length and contain 5 highly conserved cysteine residues at their N terminus. The function of this family is unknown.
Probab=22.14 E-value=45 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=19.7
Q ss_pred cccccceecCCcEEEEEeHHHHhhhhh
Q psy906 51 MWTVSAFQMHPCTIMICDEDATQELRV 77 (84)
Q Consensus 51 ~~Pas~l~~h~~~~~~~D~~Aa~~l~~ 77 (84)
.+|..+.....++.+|+|+.|.....+
T Consensus 51 ~~PG~~~eG~~~~~~~IDerAs~~Qre 77 (184)
T PF07040_consen 51 HWPGNMHEGNWKVALYIDERASDAQRE 77 (184)
T ss_pred ecCCCcccCceEEEEEECCCCCHHHHH
Confidence 367766666778999999988765443
No 37
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=22.01 E-value=2e+02 Score=17.53 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCc-ccccccceecCCcEEEEEeHH-HHhhhh
Q psy906 35 HKAFALYKAIEEGVN-HMWTVSAFQMHPCTIMICDED-ATQELR 76 (84)
Q Consensus 35 ~Ka~~l~~~l~~~~~-~~~Pas~l~~h~~~~~~~D~~-Aa~~l~ 76 (84)
+|.-+++.+ .+-.+ +-.|.-+--.+.++.+|+|.+ +|+.|.
T Consensus 19 dK~wLl~~i-q~~c~v~F~Pv~fh~~~~~a~FfV~D~~tA~aLk 61 (88)
T PF09162_consen 19 DKDWLLNSI-QSHCSVPFTPVDFHYEKNRAQFFVEDASTASALK 61 (88)
T ss_dssp -HHHHHHHH-HHHSSS----EEEEEETTEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHH-HHHCCCCeeeeeeeeeCCEEEEEeCCHHHHHHHH
Confidence 466777764 43222 233444333455788998554 555563
No 38
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=21.85 E-value=53 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=6.0
Q ss_pred ceEEEEEcChhH
Q psy906 25 SQVMILITGSHK 36 (84)
Q Consensus 25 ~~v~~lv~G~~K 36 (84)
++|++++|..++
T Consensus 1 kkiLiV~Ts~~~ 12 (38)
T PF13587_consen 1 KKILIVVTSHDK 12 (38)
T ss_dssp SEEEEEE---SE
T ss_pred CeEEEEEcCccc
Confidence 467777777654
No 39
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=21.22 E-value=1.9e+02 Score=18.91 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=25.7
Q ss_pred cceEEEEEcChhHHHHHHHHHhcCCcccccccce
Q psy906 24 FSQVMILITGSHKAFALYKAIEEGVNHMWTVSAF 57 (84)
Q Consensus 24 A~~v~~lv~G~~Ka~~l~~~l~~~~~~~~Pas~l 57 (84)
.+-+++--.|.+|...+.+...+.....++.+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~ 39 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG 39 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee
Confidence 4556677789999999999998876655665543
No 40
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.50 E-value=1.2e+02 Score=17.99 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=17.8
Q ss_pred chhhcccceEEEEEcChhHHHH
Q psy906 18 SSSSPHFSQVMILITGSHKAFA 39 (84)
Q Consensus 18 ~~~I~~A~~v~~lv~G~~Ka~~ 39 (84)
...|.++++|++..+|....-+
T Consensus 7 ~~~i~~~~~i~i~g~g~s~~~a 28 (139)
T cd05013 7 VDLLAKARRIYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHhCCEEEEEEcCchHHHH
Confidence 3578899999999999877644
No 41
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=20.18 E-value=1.3e+02 Score=21.24 Aligned_cols=43 Identities=12% Similarity=0.029 Sum_probs=27.0
Q ss_pred cChhHHHHHHHHHhcCCcccccccceecCCcEEEEEeHHHHhhhh
Q psy906 32 TGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELR 76 (84)
Q Consensus 32 ~G~~Ka~~l~~~l~~~~~~~~Pas~l~~h~~~~~~~D~~Aa~~l~ 76 (84)
.|..=++...++|.|....++|....... ..+++|...|..+.
T Consensus 237 ~G~~Aa~~a~~IL~G~~~~~ipv~~~~~~--~~~~iN~~~a~~lg 279 (294)
T PF04392_consen 237 QGRQAAEMAVRILKGEKPSDIPVERPSKG--FEIIINLKTARKLG 279 (294)
T ss_dssp HHHHHHHHHHHHCTT--GGGS--EEE------EEEEEHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCCcccCCccccCCC--cEEEEcHHHHHHcC
Confidence 35566778899999987667777654321 67899999998763
Done!