RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy906
(84 letters)
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.
Length = 261
Score = 89.9 bits (224), Expect = 7e-24
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 84
++M+L G +KA A+ A+E VNHMW S Q+HP ++ DE A EL+VKTVKYF
Sbjct: 198 EIMLLAPGHNKAEAVKAAVEGPVNHMWPASILQLHPKATLVLDEAAASELKVKTVKYFT 256
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase. The set of
proteins recognized by This model includes a closely
related pair from Bacillus subtilis, one of which is
uncharacterized but included as a member of the
orthologous set [Central intermediary metabolism, Amino
sugars].
Length = 259
Score = 86.4 bits (214), Expect = 2e-22
Identities = 37/58 (63%), Positives = 49/58 (84%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYF 83
+V+IL++G KA AL KA+E GVNHMWT+SA Q+H I++CDE+ATQEL+VKTV+YF
Sbjct: 198 EVLILVSGHQKALALQKAVEGGVNHMWTISALQLHKHAIVVCDENATQELKVKTVEYF 255
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional.
Length = 253
Score = 86.0 bits (213), Expect = 3e-22
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVK 81
+V++L TG+ KA A+ + +E GV HM SA QMHP ++ DEDAT EL+VKT K
Sbjct: 198 EVLLLATGASKAIAVARCVEGGVTHMCPASALQMHPAAVLCLDEDATLELKVKTTK 253
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
GlcN6P deaminase catalyzes the reversible conversion of
GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
The reaction is an aldo-keto isomerization coupled with
an amination or deamination. It is the last step of the
metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
(GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
is allosterically activated by GlcNAc6P.
Length = 232
Score = 74.4 bits (184), Expect = 4e-18
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 75
++++L TG KA A+ KA+E V S Q+HP +I DE A EL
Sbjct: 183 EILLLATGEGKAEAVKKALEGPVTEECPASILQLHPNVTVILDEAAASEL 232
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism].
Length = 238
Score = 58.0 bits (141), Expect = 6e-12
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRV 77
+V++L+TG KA AL +A+E V ++ S Q+HP DE+A L+V
Sbjct: 187 EVLLLVTGEEKADALKQALEGPVTELYPASILQLHPNVTWFLDEEAASLLKV 238
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 47.3 bits (112), Expect = 4e-08
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 27 VMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMIC 67
V++L+ G K L + E GV + + I+I
Sbjct: 129 VIVLVDGRKKVDYLCQNTEPGVIENGIFADIRGKEKDIVIV 169
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase;
Provisional.
Length = 239
Score = 35.5 bits (82), Expect = 0.001
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 23 HFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 75
+++++ G KA L K ++ V S Q+HP +I DE A EL
Sbjct: 185 AAKNLLLIVNGKGKAQILKKVLQGPVTEDVPASILQLHPNLTVILDEAAAAEL 237
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 35.4 bits (82), Expect = 0.001
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL-RVKT 79
++++L G HKA + +A+E ++ S Q HP + D A EL R+KT
Sbjct: 225 RIVLLAWGEHKAPIIKRAVEGEISDEVPASYLQEHPNATFVLDLAAASELTRIKT 279
>gnl|CDD|182835 PRK10916, PRK10916, ADP-heptose:LPS heptosyltransferase II;
Provisional.
Length = 348
Score = 27.7 bits (62), Expect = 0.60
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
Query: 15 SLYSSSSPHFS-------QVMILITGSHK 36
+LY SSP F+ +V+ LITG HK
Sbjct: 285 ALYGPSSPDFTPPLSHKARVIRLITGYHK 313
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 25.8 bits (57), Expect = 3.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 29 ILITGSHKAFA 39
I+ITGS KAFA
Sbjct: 52 IVITGSEKAFA 62
>gnl|CDD|236694 PRK10436, PRK10436, hypothetical protein; Provisional.
Length = 462
Score = 25.7 bits (57), Expect = 3.4
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 26 QVMILITG---SHKAFALYKAIE 45
Q +IL+TG S K LY A++
Sbjct: 218 QGLILVTGPTGSGKTVTLYSALQ 240
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 25.5 bits (56), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 ALYKAIEEGVNHMWT-VSAFQM---HPCT 63
AL KAIE G + + T +S+ HP T
Sbjct: 209 ALLKAIEAGADGIDTAISSMSGGTSHPPT 237
>gnl|CDD|131592 TIGR02540, gpx7, putative glutathione peroxidase Gpx7. This model
represents one of several families of known and probable
glutathione peroxidases. This family is restricted to
animals and designated GPX7.
Length = 153
Score = 25.2 bits (55), Expect = 3.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 14 KSLYSSSSPHFSQVMILITGSHKAF 38
+ Y + P FS++ IL + + AF
Sbjct: 82 RRNYGVTFPMFSKIKILGSEAEPAF 106
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubulins and
microtubules are subjected to several post-translational
modifications of which the reversible
detyrosination/tyrosination of the carboxy-terminal end
of most alpha-tubulins has been extensively analysed.
This modification cycle involves a specific
carboxypeptidase and the activity of the
tubulin-tyrosine ligase (TTL). The true physiological
function of TTL has so far not been established.
Tubulin-tyrosine ligase (TTL) catalyzes the
ATP-dependent post-translational addition of a tyrosine
to the carboxy terminal end of detyrosinated
alpha-tubulin. In normally cycling cells, the
tyrosinated form of tubulin predominates. However, in
breast cancer cells, the detyrosinated form frequently
predominates, with a correlation to tumour
aggressiveness. On the other hand, 3-nitrotyrosine has
been shown to be incorporated, by TTL, into the carboxy
terminal end of detyrosinated alpha-tubulin. This
reaction is not reversible by the carboxypeptidase
enzyme. Cells cultured in 3-nitrotyrosine rich medium
showed evidence of altered microtubule structure and
function, including altered cell morphology, epithelial
barrier dysfunction, and apoptosis. Bacterial homologs
of TTL are predicted to form peptide tags. Some of these
are fused to a 2-oxoglutarate Fe(II)-dependent
dioxygenase domain.
Length = 291
Score = 25.4 bits (56), Expect = 4.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 36 KAFALYKAIEEGVNHMWTVSAFQMH 60
K+ +L + E H W++ F +
Sbjct: 170 KSSSLNEDYNEPNGHKWSLFNFWKY 194
>gnl|CDD|238694 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
6PGL catalyzes the second step of the oxidative phase of
the pentose phosphate pathway, the hydrolyzation of
6-phosphoglucono-1,5-lactone (delta form) to
6-phosphogluconate. 6PGL is thought to guard against the
accumulation of the delta form of the lactone, which may
be toxic through its reaction with endogenous cellular
nucleophiles.
Length = 219
Score = 24.8 bits (55), Expect = 5.3
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTI 64
+V+ L+TG+ KA AL +A+ + P +
Sbjct: 177 RVVFLVTGAEKAEALKRALAGPDPEELPAARVLPRPGEV 215
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.130 0.385
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,954,773
Number of extensions: 293383
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 18
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)