RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy906
(84 letters)
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 79.4 bits (195), Expect = 3e-20
Identities = 35/62 (56%), Positives = 45/62 (72%)
Query: 23 HFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKY 82
+VMIL+ GS KA AL A+E VNHMWT+S Q+HP IM+CDE +T EL+VKT++Y
Sbjct: 195 DAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRY 254
Query: 83 FK 84
F
Sbjct: 255 FN 256
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 79.4 bits (195), Expect = 3e-20
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQELRVKTVKYFK 84
+VMILITG+HKAFALYKAIEEGVNHMWTVSAFQ HP T+ +CDEDAT EL+VKTVKYFK
Sbjct: 198 EVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFK 256
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965
{Enterococcus faecalis [TaxId: 1351]}
Length = 247
Score = 30.4 bits (68), Expect = 0.015
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 75
V+ + G KA A+ ++ T +I DE A E+
Sbjct: 208 YVVAIAGGKTKAKAIRAYMKNA------------PKQTWLITDEAAANEI 245
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
{Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 27.7 bits (61), Expect = 0.13
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 13/50 (26%)
Query: 26 QVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDEDATQEL 75
++ + GS KA A+ + T+++ DE A ++L
Sbjct: 212 DIIAVAGGSSKAEAIEAYF-------------KKPRNTVLVTDEGAAKKL 248
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga
maritima [TaxId: 2336]}
Length = 218
Score = 27.2 bits (59), Expect = 0.19
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 22 PHFSQVMILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICD 68
V+ LI G K L + ++ + + T+
Sbjct: 174 NTSLYVLFLIRGKEKINRLTEILK---DTPLPAYFVRGKEKTVWFVG 217
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae
[TaxId: 666]}
Length = 178
Score = 23.5 bits (50), Expect = 3.8
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 29 ILITGSHKAFALYKAIEEGVNHMWTVSAFQMHPCTIMICDE 69
+L T + + K + + W S Q++ + ++
Sbjct: 9 VLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQ 49
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 23.2 bits (49), Expect = 5.3
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 39 ALYKAIEEGVN----HMWT 53
+++KA EG+ W+
Sbjct: 407 SVWKAANEGIPVKGYLHWS 425
>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei,
Endoglucanase I [TaxId: 51453]}
Length = 371
Score = 23.2 bits (50), Expect = 5.6
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 56 AFQMHPCTIMICDED 70
A H CT CD
Sbjct: 208 ALTPHSCTATACDSA 222
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
white clover (Trifolium repens) [TaxId: 3899]}
Length = 490
Score = 22.8 bits (48), Expect = 6.8
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 39 ALYKAIEEGVN----HMWT 53
+ AI +GVN W+
Sbjct: 429 YVLTAIGDGVNVKGYFAWS 447
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 22.9 bits (48), Expect = 7.3
Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 39 ALYKAIEEGVN----HMWT 53
L ++I+ G + W+
Sbjct: 424 VLKQSIDLGADVRGYFAWS 442
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 22.9 bits (48), Expect = 7.8
Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 39 ALYKAIEEGVN----HMWT 53
+++AI G + W+
Sbjct: 408 QVHRAINSGADVRGYLHWS 426
>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
1931]}
Length = 464
Score = 22.5 bits (47), Expect = 8.9
Identities = 5/19 (26%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 39 ALYKAIEEGVN----HMWT 53
A+++AI++G + +W+
Sbjct: 399 AVHRAIKDGSDVRGYFLWS 417
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp.
alkalophilus [TaxId: 1397]}
Length = 449
Score = 22.4 bits (47), Expect = 9.2
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 39 ALYKAIEEGVN----HMWT 53
+AIE+G+N W+
Sbjct: 384 QASRAIEDGINLKGYMEWS 402
>d2huha1 b.7.5.1 (A:81-227) Putative DNA mismatch repair protein
BT2179 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 22.1 bits (47), Expect = 9.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 68 DEDATQELRVKTVKYFK 84
+ ELR+ TVK++K
Sbjct: 100 KPAVSVELRIDTVKFYK 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.130 0.385
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,909
Number of extensions: 10663
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 24
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)