Query psy9060
Match_columns 366
No_of_seqs 440 out of 2773
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:54:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 3.7E-48 8E-53 411.9 30.6 276 61-359 11-286 (737)
2 KOG1680|consensus 100.0 6.7E-45 1.4E-49 335.6 14.3 198 66-305 40-237 (290)
3 PRK09120 p-hydroxycinnamoyl Co 100.0 1.6E-43 3.4E-48 337.5 22.9 209 62-309 7-219 (275)
4 TIGR02437 FadB fatty oxidation 100.0 5.3E-43 1.2E-47 371.6 28.4 254 64-360 7-263 (714)
5 PRK05980 enoyl-CoA hydratase; 100.0 2.7E-43 5.9E-48 333.2 23.3 206 64-308 4-214 (260)
6 PRK08150 enoyl-CoA hydratase; 100.0 3E-43 6.6E-48 332.1 23.0 204 63-308 2-206 (255)
7 PRK05862 enoyl-CoA hydratase; 100.0 3.2E-43 7E-48 332.2 23.2 206 62-309 3-209 (257)
8 PRK07658 enoyl-CoA hydratase; 100.0 3.4E-43 7.5E-48 331.9 23.3 199 64-302 3-201 (257)
9 PRK06142 enoyl-CoA hydratase; 100.0 3E-43 6.4E-48 335.1 22.8 209 62-308 5-224 (272)
10 PRK06190 enoyl-CoA hydratase; 100.0 3.5E-43 7.5E-48 332.1 22.8 206 61-308 2-208 (258)
11 PRK07327 enoyl-CoA hydratase; 100.0 3.5E-43 7.7E-48 333.9 22.8 209 61-308 9-220 (268)
12 TIGR02440 FadJ fatty oxidation 100.0 7.4E-43 1.6E-47 370.2 27.8 249 68-360 6-255 (699)
13 PRK06144 enoyl-CoA hydratase; 100.0 5.8E-43 1.3E-47 331.4 23.7 208 62-308 7-217 (262)
14 PRK05809 3-hydroxybutyryl-CoA 100.0 6.9E-43 1.5E-47 330.5 23.6 208 61-308 2-211 (260)
15 PRK11154 fadJ multifunctional 100.0 1.1E-42 2.5E-47 369.5 28.0 253 64-359 6-259 (708)
16 PRK06563 enoyl-CoA hydratase; 100.0 3.4E-43 7.4E-48 331.7 21.4 204 65-308 1-206 (255)
17 COG1024 CaiD Enoyl-CoA hydrata 100.0 3.1E-43 6.7E-48 332.3 21.0 209 62-308 4-212 (257)
18 TIGR01929 menB naphthoate synt 100.0 4.5E-43 9.8E-48 331.6 21.9 208 63-309 2-212 (259)
19 PRK09674 enoyl-CoA hydratase-i 100.0 7.7E-43 1.7E-47 329.3 23.0 203 64-308 3-206 (255)
20 TIGR03210 badI 2-ketocyclohexa 100.0 5.9E-43 1.3E-47 330.3 22.1 206 63-309 2-209 (256)
21 PRK08139 enoyl-CoA hydratase; 100.0 8.2E-43 1.8E-47 331.1 23.2 208 61-308 9-217 (266)
22 PRK08140 enoyl-CoA hydratase; 100.0 9.2E-43 2E-47 330.0 23.3 207 62-308 3-213 (262)
23 PRK06143 enoyl-CoA hydratase; 100.0 7.9E-43 1.7E-47 329.4 22.5 206 63-309 6-214 (256)
24 TIGR02280 PaaB1 phenylacetate 100.0 9.9E-43 2.2E-47 328.7 22.9 205 65-309 1-208 (256)
25 PRK09076 enoyl-CoA hydratase; 100.0 1.2E-42 2.6E-47 328.5 23.5 204 64-308 4-209 (258)
26 PRK09245 enoyl-CoA hydratase; 100.0 9.6E-43 2.1E-47 330.5 22.5 207 64-309 4-218 (266)
27 PRK08138 enoyl-CoA hydratase; 100.0 1.3E-42 2.8E-47 328.9 23.3 205 62-308 6-212 (261)
28 PRK05995 enoyl-CoA hydratase; 100.0 1.3E-42 2.8E-47 329.0 22.5 208 62-309 3-213 (262)
29 PRK11730 fadB multifunctional 100.0 3.8E-42 8.1E-47 365.7 28.3 253 64-359 7-262 (715)
30 PRK07657 enoyl-CoA hydratase; 100.0 2E-42 4.3E-47 327.4 23.3 206 63-308 3-211 (260)
31 PRK06127 enoyl-CoA hydratase; 100.0 3E-42 6.6E-47 327.7 24.2 209 61-308 9-220 (269)
32 PRK06023 enoyl-CoA hydratase; 100.0 1.6E-42 3.6E-47 326.3 22.0 204 64-308 4-211 (251)
33 PLN02664 enoyl-CoA hydratase/d 100.0 1.9E-42 4E-47 330.1 22.6 207 65-309 10-227 (275)
34 PRK07260 enoyl-CoA hydratase; 100.0 2E-42 4.3E-47 326.5 22.5 208 63-309 2-213 (255)
35 PRK06688 enoyl-CoA hydratase; 100.0 1.9E-42 4.1E-47 327.2 22.3 199 63-302 5-203 (259)
36 PRK07799 enoyl-CoA hydratase; 100.0 1.6E-42 3.6E-47 328.4 21.8 208 62-309 4-215 (263)
37 PRK07396 dihydroxynaphthoic ac 100.0 2.1E-42 4.5E-47 329.5 22.5 208 61-309 11-222 (273)
38 PRK07511 enoyl-CoA hydratase; 100.0 2.3E-42 5E-47 326.9 22.7 206 64-308 4-212 (260)
39 PLN02600 enoyl-CoA hydratase 100.0 1.8E-42 3.9E-47 326.1 21.8 200 70-309 2-203 (251)
40 PRK05869 enoyl-CoA hydratase; 100.0 2.2E-42 4.8E-47 319.8 21.8 192 70-302 15-206 (222)
41 PRK05864 enoyl-CoA hydratase; 100.0 2.6E-42 5.7E-47 329.2 22.8 208 62-308 8-224 (276)
42 PRK08258 enoyl-CoA hydratase; 100.0 3.5E-42 7.6E-47 328.5 23.6 208 63-309 17-229 (277)
43 PRK08260 enoyl-CoA hydratase; 100.0 2.8E-42 6E-47 332.2 22.9 209 62-309 3-229 (296)
44 PRK05981 enoyl-CoA hydratase; 100.0 3.4E-42 7.3E-47 326.8 22.6 209 61-308 2-217 (266)
45 PRK06494 enoyl-CoA hydratase; 100.0 4.1E-42 8.8E-47 325.1 22.8 206 61-309 2-209 (259)
46 PRK11423 methylmalonyl-CoA dec 100.0 3.4E-42 7.4E-47 326.0 22.2 207 61-309 2-211 (261)
47 PRK07659 enoyl-CoA hydratase; 100.0 3.5E-42 7.5E-47 325.7 21.8 205 63-308 6-211 (260)
48 PRK05674 gamma-carboxygeranoyl 100.0 2.6E-42 5.6E-47 327.5 20.7 207 62-308 4-214 (265)
49 PRK08252 enoyl-CoA hydratase; 100.0 5.7E-42 1.2E-46 323.2 22.9 202 63-308 3-205 (254)
50 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.6E-42 3.5E-47 324.9 18.9 203 66-308 1-204 (245)
51 PRK06210 enoyl-CoA hydratase; 100.0 3.6E-42 7.8E-47 327.6 21.0 209 61-308 3-223 (272)
52 PRK08259 enoyl-CoA hydratase; 100.0 5.4E-42 1.2E-46 323.4 21.6 204 63-308 3-207 (254)
53 PRK07468 enoyl-CoA hydratase; 100.0 1E-41 2.2E-46 322.9 22.9 207 62-308 3-213 (262)
54 PRK05870 enoyl-CoA hydratase; 100.0 3.9E-42 8.5E-47 323.4 19.8 205 63-309 3-208 (249)
55 PLN02888 enoyl-CoA hydratase 100.0 8.1E-42 1.8E-46 324.1 22.2 206 61-309 7-214 (265)
56 PRK07110 polyketide biosynthes 100.0 2E-41 4.3E-46 318.7 23.0 205 61-308 3-208 (249)
57 PRK03580 carnitinyl-CoA dehydr 100.0 1.9E-41 4.1E-46 320.9 22.6 203 64-308 4-208 (261)
58 PRK06495 enoyl-CoA hydratase; 100.0 2.9E-41 6.4E-46 318.9 22.3 205 61-308 2-208 (257)
59 PLN03214 probable enoyl-CoA hy 100.0 5.6E-41 1.2E-45 320.3 23.5 208 62-309 10-223 (278)
60 PLN02921 naphthoate synthase 100.0 4.5E-41 9.7E-46 327.1 23.2 208 61-309 63-276 (327)
61 PRK07509 enoyl-CoA hydratase; 100.0 3.2E-41 6.9E-46 319.4 21.5 207 62-309 2-215 (262)
62 PRK07938 enoyl-CoA hydratase; 100.0 4.1E-41 8.9E-46 316.5 21.2 198 69-309 8-206 (249)
63 PRK08788 enoyl-CoA hydratase; 100.0 1.5E-40 3.3E-45 317.9 25.4 203 59-301 13-227 (287)
64 PRK08290 enoyl-CoA hydratase; 100.0 1.1E-40 2.5E-45 319.7 22.9 208 61-309 2-231 (288)
65 PLN02267 enoyl-CoA hydratase/i 100.0 1.8E-40 3.9E-45 310.3 23.3 200 65-301 2-203 (239)
66 PRK07827 enoyl-CoA hydratase; 100.0 1.3E-40 2.8E-45 314.9 20.5 205 63-309 6-213 (260)
67 PRK07854 enoyl-CoA hydratase; 100.0 1.8E-40 4E-45 311.0 21.2 194 65-308 2-196 (243)
68 TIGR03189 dienoyl_CoA_hyt cycl 100.0 3.2E-40 7E-45 310.8 22.7 191 65-302 3-194 (251)
69 PRK08321 naphthoate synthase; 100.0 3.5E-40 7.6E-45 318.3 22.9 209 61-308 21-250 (302)
70 PRK08272 enoyl-CoA hydratase; 100.0 4.2E-40 9.1E-45 317.9 22.3 206 61-308 8-238 (302)
71 PRK06072 enoyl-CoA hydratase; 100.0 4.8E-40 1E-44 309.1 21.8 198 65-309 2-200 (248)
72 PRK06213 enoyl-CoA hydratase; 100.0 1.3E-39 2.8E-44 302.7 22.9 195 64-302 4-199 (229)
73 PLN02157 3-hydroxyisobutyryl-C 100.0 7.8E-40 1.7E-44 325.1 22.7 198 62-300 36-236 (401)
74 PRK07112 polyketide biosynthes 100.0 1E-39 2.2E-44 308.0 21.3 204 62-309 3-208 (255)
75 PRK05617 3-hydroxyisobutyryl-C 100.0 8.8E-40 1.9E-44 320.4 21.0 180 64-270 4-187 (342)
76 PRK12478 enoyl-CoA hydratase; 100.0 1E-39 2.2E-44 314.5 21.0 205 62-309 4-224 (298)
77 KOG1679|consensus 100.0 1.7E-40 3.6E-45 295.1 13.8 212 62-308 26-242 (291)
78 PLN02874 3-hydroxyisobutyryl-C 100.0 3E-39 6.6E-44 320.4 21.9 185 59-270 7-192 (379)
79 TIGR03200 dearomat_oah 6-oxocy 100.0 7.1E-39 1.5E-43 310.7 21.0 172 73-270 38-212 (360)
80 PLN02988 3-hydroxyisobutyryl-C 100.0 6.6E-38 1.4E-42 310.1 21.8 195 64-299 10-207 (381)
81 TIGR03222 benzo_boxC benzoyl-C 100.0 9.8E-38 2.1E-42 320.2 21.2 204 65-308 260-491 (546)
82 PRK08184 benzoyl-CoA-dihydrodi 100.0 9.9E-38 2.1E-42 321.0 20.8 207 62-308 259-495 (550)
83 cd06558 crotonase-like Crotona 100.0 5.1E-37 1.1E-41 277.1 21.9 193 65-296 1-194 (195)
84 TIGR03222 benzo_boxC benzoyl-C 100.0 4E-37 8.8E-42 315.7 23.3 208 60-302 8-231 (546)
85 PLN02851 3-hydroxyisobutyryl-C 100.0 1.1E-36 2.3E-41 302.7 22.9 182 62-270 41-225 (407)
86 KOG1681|consensus 100.0 2.5E-37 5.3E-42 277.2 15.3 210 61-308 17-242 (292)
87 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.1E-36 4.6E-41 311.2 23.0 207 60-302 12-235 (550)
88 COG0447 MenB Dihydroxynaphthoi 100.0 1.5E-33 3.3E-38 251.2 11.0 203 60-303 15-224 (282)
89 KOG0016|consensus 100.0 2.7E-31 5.9E-36 243.2 18.8 204 61-303 5-215 (266)
90 KOG1682|consensus 100.0 6.7E-29 1.5E-33 219.6 14.8 201 64-304 33-233 (287)
91 KOG1684|consensus 99.9 4.3E-26 9.3E-31 217.0 14.4 182 63-270 38-222 (401)
92 cd07020 Clp_protease_NfeD_1 No 99.8 3.8E-18 8.2E-23 154.0 14.4 145 74-270 2-165 (187)
93 cd07014 S49_SppA Signal peptid 99.8 2.6E-18 5.5E-23 153.6 12.7 137 92-270 23-169 (177)
94 cd07019 S49_SppA_1 Signal pept 99.6 4.2E-15 9.1E-20 136.6 9.5 84 90-191 20-103 (211)
95 TIGR00705 SppA_67K signal pept 99.6 1E-14 2.2E-19 152.4 9.7 182 69-300 306-524 (584)
96 cd00394 Clp_protease_like Case 99.5 4.2E-13 9.1E-18 117.8 12.3 135 88-267 8-161 (161)
97 cd07016 S14_ClpP_1 Caseinolyti 99.5 2.1E-13 4.5E-18 119.9 10.1 129 91-267 15-160 (160)
98 cd07022 S49_Sppa_36K_type Sign 99.4 1.4E-12 3.1E-17 120.1 13.5 88 85-191 18-106 (214)
99 cd07023 S49_Sppa_N_C Signal pe 99.4 2.5E-12 5.5E-17 117.8 13.1 98 73-191 2-99 (208)
100 TIGR00706 SppA_dom signal pept 99.3 5.3E-11 1.2E-15 109.1 14.0 91 73-191 2-94 (207)
101 cd07021 Clp_protease_NfeD_like 99.2 3.8E-10 8.2E-15 101.1 14.5 141 74-270 2-171 (178)
102 cd07018 S49_SppA_67K_type Sign 99.2 1.5E-10 3.2E-15 107.3 10.0 84 89-191 27-110 (222)
103 PRK10949 protease 4; Provision 98.9 2E-08 4.4E-13 105.6 13.3 165 70-269 325-528 (618)
104 TIGR02441 fa_ox_alpha_mit fatt 98.8 4.4E-09 9.5E-14 113.1 5.1 61 1-61 267-327 (737)
105 cd07015 Clp_protease_NfeD Nodu 98.7 4.6E-07 9.9E-12 80.7 14.7 138 87-270 9-165 (172)
106 TIGR02437 FadB fatty oxidation 98.6 3.8E-08 8.3E-13 105.6 5.1 61 1-61 243-303 (714)
107 cd07013 S14_ClpP Caseinolytic 98.6 7.9E-07 1.7E-11 78.5 12.2 135 88-267 9-162 (162)
108 PRK00277 clpP ATP-dependent Cl 98.4 2.3E-06 5.1E-11 78.1 11.6 130 88-270 40-196 (200)
109 KOG1683|consensus 98.4 1.8E-07 3.8E-12 91.0 3.0 172 72-269 66-239 (380)
110 cd07017 S14_ClpP_2 Caseinolyti 98.3 1E-05 2.2E-10 71.9 12.2 135 88-267 18-171 (171)
111 PRK11778 putative inner membra 98.2 7.5E-06 1.6E-10 79.9 11.0 100 70-192 89-188 (330)
112 COG0616 SppA Periplasmic serin 98.2 7.7E-06 1.7E-10 79.8 10.4 81 93-192 82-162 (317)
113 PRK12553 ATP-dependent Clp pro 98.2 3.4E-05 7.4E-10 70.8 13.3 135 88-270 44-202 (207)
114 CHL00198 accA acetyl-CoA carbo 98.1 0.00037 8E-09 67.7 20.0 139 85-270 132-270 (322)
115 TIGR00513 accA acetyl-CoA carb 98.1 0.00043 9.4E-09 67.2 20.2 139 85-270 129-267 (316)
116 PRK05724 acetyl-CoA carboxylas 98.1 0.00046 1E-08 67.0 19.6 139 85-270 129-267 (319)
117 PRK12319 acetyl-CoA carboxylas 98.1 0.00025 5.4E-09 67.1 17.4 138 85-270 76-214 (256)
118 PLN03230 acetyl-coenzyme A car 98.1 0.00057 1.2E-08 68.2 20.0 137 86-270 200-337 (431)
119 PLN03229 acetyl-coenzyme A car 98.1 0.0009 2E-08 70.8 22.3 139 85-270 220-358 (762)
120 PRK14512 ATP-dependent Clp pro 98.0 6.6E-05 1.4E-09 68.4 11.8 137 88-270 32-188 (197)
121 PF00574 CLP_protease: Clp pro 97.9 3.1E-05 6.8E-10 69.3 7.8 137 88-270 25-181 (182)
122 TIGR02440 FadJ fatty oxidation 97.9 1.1E-05 2.3E-10 86.8 5.3 60 1-60 235-294 (699)
123 TIGR00493 clpP ATP-dependent C 97.9 0.00029 6.3E-09 63.9 12.9 137 88-269 35-190 (191)
124 PF01972 SDH_sah: Serine dehyd 97.8 0.00037 7.9E-09 65.9 13.0 96 85-228 69-164 (285)
125 CHL00028 clpP ATP-dependent Cl 97.8 0.00047 1E-08 63.0 13.5 136 88-270 39-196 (200)
126 PRK14514 ATP-dependent Clp pro 97.7 0.00035 7.5E-09 64.7 11.6 135 88-270 63-219 (221)
127 PF01343 Peptidase_S49: Peptid 97.7 6.2E-05 1.4E-09 65.8 5.3 37 155-191 3-39 (154)
128 PRK12551 ATP-dependent Clp pro 97.7 0.00079 1.7E-08 61.3 12.6 137 88-270 34-190 (196)
129 COG1030 NfeD Membrane-bound se 97.7 0.0015 3.3E-08 65.5 15.3 149 70-270 25-188 (436)
130 TIGR03133 malonate_beta malona 97.7 0.012 2.5E-07 56.3 20.6 147 73-270 61-217 (274)
131 TIGR03134 malonate_gamma malon 97.6 0.0033 7.2E-08 58.9 16.0 147 76-270 36-189 (238)
132 PRK14513 ATP-dependent Clp pro 97.6 0.0011 2.4E-08 60.6 11.7 134 87-270 35-192 (201)
133 PRK05654 acetyl-CoA carboxylas 97.5 0.015 3.2E-07 56.2 18.7 102 75-189 124-226 (292)
134 PRK11154 fadJ multifunctional 97.4 0.00015 3.2E-09 78.3 5.1 60 1-60 240-299 (708)
135 TIGR00705 SppA_67K signal pept 97.4 0.00098 2.1E-08 70.3 10.5 80 92-189 77-156 (584)
136 TIGR00515 accD acetyl-CoA carb 97.3 0.022 4.7E-07 54.8 17.7 103 73-189 122-225 (285)
137 TIGR01117 mmdA methylmalonyl-C 97.2 0.024 5.2E-07 59.0 18.6 150 77-270 320-481 (512)
138 PRK07189 malonate decarboxylas 97.1 0.021 4.6E-07 55.2 15.8 103 73-189 70-178 (301)
139 PRK10949 protease 4; Provision 97.1 0.0062 1.3E-07 64.6 12.8 80 92-189 96-175 (618)
140 COG0740 ClpP Protease subunit 97.0 0.012 2.7E-07 53.4 12.3 42 148-189 75-118 (200)
141 CHL00174 accD acetyl-CoA carbo 97.0 0.061 1.3E-06 51.9 17.6 103 73-189 135-239 (296)
142 PRK11730 fadB multifunctional 97.0 0.00074 1.6E-08 73.0 5.1 60 1-60 243-302 (715)
143 PF01039 Carboxyl_trans: Carbo 96.9 0.055 1.2E-06 56.1 17.0 101 73-188 59-161 (493)
144 PRK12552 ATP-dependent Clp pro 96.8 0.022 4.8E-07 52.8 12.3 142 88-270 49-214 (222)
145 PLN02820 3-methylcrotonyl-CoA 96.0 0.35 7.7E-06 51.0 16.9 96 84-189 141-236 (569)
146 TIGR01117 mmdA methylmalonyl-C 95.3 0.47 1E-05 49.5 14.6 92 84-189 94-185 (512)
147 COG0825 AccA Acetyl-CoA carbox 95.2 0.11 2.5E-06 49.5 8.9 92 145-270 175-266 (317)
148 PLN02820 3-methylcrotonyl-CoA 95.1 0.99 2.1E-05 47.7 16.3 140 87-270 381-540 (569)
149 PF01039 Carboxyl_trans: Carbo 94.8 0.36 7.7E-06 50.1 12.1 151 76-270 298-464 (493)
150 COG0777 AccD Acetyl-CoA carbox 94.0 3.2 7E-05 39.5 15.3 92 85-189 135-227 (294)
151 COG4799 Acetyl-CoA carboxylase 91.1 0.38 8.3E-06 49.9 5.6 92 84-189 103-194 (526)
152 COG4799 Acetyl-CoA carboxylase 86.0 14 0.00031 38.6 12.9 157 73-270 326-494 (526)
153 KOG0840|consensus 82.5 12 0.00026 35.4 9.6 22 249-270 236-257 (275)
154 PF02601 Exonuc_VII_L: Exonucl 82.4 2.4 5.3E-05 41.2 5.4 79 91-189 55-136 (319)
155 TIGR00237 xseA exodeoxyribonuc 80.6 3 6.5E-05 42.6 5.5 81 89-189 168-248 (432)
156 PRK00286 xseA exodeoxyribonucl 71.6 6.4 0.00014 40.1 5.1 79 90-189 175-253 (438)
157 COG0074 SucD Succinyl-CoA synt 67.5 17 0.00037 35.0 6.6 73 70-170 145-240 (293)
158 smart00250 PLEC Plectin repeat 61.6 6.2 0.00014 25.8 1.8 18 249-266 18-35 (38)
159 COG1570 XseA Exonuclease VII, 56.7 17 0.00038 37.1 4.8 78 92-189 177-254 (440)
160 PF00681 Plectin: Plectin repe 50.2 6.7 0.00015 26.7 0.5 20 249-268 18-37 (45)
161 PTZ00187 succinyl-CoA syntheta 48.6 59 0.0013 31.9 6.9 54 95-170 211-264 (317)
162 PF06833 MdcE: Malonate decarb 44.7 2.7E+02 0.0059 26.1 11.6 141 85-270 40-187 (234)
163 KOG3019|consensus 42.6 27 0.00059 32.8 3.4 33 233-266 270-302 (315)
164 PRK05862 enoyl-CoA hydratase; 40.9 28 0.00062 32.6 3.4 51 5-55 200-250 (257)
165 TIGR00520 asnASE_II L-asparagi 40.5 1.5E+02 0.0033 29.4 8.5 45 73-119 72-116 (349)
166 PRK08138 enoyl-CoA hydratase; 39.1 34 0.00074 32.2 3.6 48 8-55 207-254 (261)
167 PF00549 Ligase_CoA: CoA-ligas 37.5 57 0.0012 28.4 4.5 62 95-171 60-121 (153)
168 KOG0540|consensus 37.1 3E+02 0.0065 28.5 9.9 99 78-189 355-456 (536)
169 COG0252 AnsB L-asparaginase/ar 36.7 1.2E+02 0.0025 30.3 7.0 33 86-118 78-110 (351)
170 smart00870 Asparaginase Aspara 36.5 1.3E+02 0.0028 29.4 7.3 33 87-119 56-88 (323)
171 PRK07658 enoyl-CoA hydratase; 32.7 52 0.0011 30.7 3.7 48 8-55 203-250 (257)
172 PF13607 Succ_CoA_lig: Succiny 32.0 1.2E+02 0.0027 25.8 5.6 53 95-170 41-93 (138)
173 COG3660 Predicted nucleoside-d 31.0 5E+02 0.011 25.2 11.0 108 75-189 131-254 (329)
174 PRK11096 ansB L-asparaginase I 28.5 2.7E+02 0.0058 27.7 8.1 43 73-119 69-111 (347)
175 PRK07511 enoyl-CoA hydratase; 27.8 65 0.0014 30.1 3.5 48 8-55 207-254 (260)
176 PRK05809 3-hydroxybutyryl-CoA 26.0 76 0.0016 29.7 3.6 49 7-55 205-253 (260)
177 KOG1255|consensus 25.8 1.7E+02 0.0037 27.7 5.7 57 95-170 218-274 (329)
178 PRK06688 enoyl-CoA hydratase; 25.0 83 0.0018 29.3 3.7 46 10-55 207-252 (259)
179 PLN02522 ATP citrate (pro-S)-l 23.0 2.4E+02 0.0051 30.3 6.9 52 96-170 210-262 (608)
180 PF01740 STAS: STAS domain; I 20.6 3.7E+02 0.0079 21.2 6.3 44 65-114 2-53 (117)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=3.7e-48 Score=411.89 Aligned_cols=276 Identities=60% Similarity=0.940 Sum_probs=236.9
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
.+.++.++++++|++|+||||+.+.|++|.+++.+|.++++.++.|++|+++||++|.|++||+|+||+++....+....
T Consensus 11 ~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~ 90 (737)
T TIGR02441 11 ARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEV 90 (737)
T ss_pred CCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHH
Confidence 44568888899999999999974589999999999999999999999999877889999999999999998643333444
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+...+++++.++.++||||||+|||+|+|||++|+|+||||||++++++ +|++||+
T Consensus 91 ~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a----------------------~fglpEv 148 (737)
T TIGR02441 91 TQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKT----------------------LLGLPEV 148 (737)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCC----------------------eEecchh
Confidence 555666788999999999999999999999999999999999999998766 8999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|||++|..+|++|+++|++++++||+++||||+|+|+.++.++++++++.+++.+.|.+++++++..
T Consensus 149 ~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~ 228 (737)
T TIGR02441 149 MLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228 (737)
T ss_pred hhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999986345666778888899999999999998877
Q ss_pred cccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT 359 (366)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~ 359 (366)
++..++.+... .+........++.+...+..+++++.++++||||||.+++++|+...
T Consensus 229 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~ 286 (737)
T TIGR02441 229 KLSINRDKGLV-HKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGY 286 (737)
T ss_pred cCCcccccccc-CccchhhcccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHh
Confidence 76666654332 22211112222456778999999999999999999999999998765
No 2
>KOG1680|consensus
Probab=100.00 E-value=6.7e-45 Score=335.58 Aligned_cols=198 Identities=31% Similarity=0.507 Sum_probs=172.9
Q ss_pred eEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060 66 KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK 145 (366)
Q Consensus 66 ~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 145 (366)
....+++|+.|+||||. ++|+++..++.+|.+++..+++|+++.++ |++|.|++||+|+||+++......+-...
T Consensus 40 ~~~~d~~I~lItlNRP~-~~Nal~~~~m~eL~~A~~~~e~D~s~~vi-VltG~gksFcsG~Dl~e~~~~~~~~~~~~--- 114 (290)
T KOG1680|consen 40 LVGEDNGIALITLNRPK-ALNALCRATMLELAEAFKDFESDDSVGVI-VLTGSGKSFCSGADLKEMKKDEFQDVSDG--- 114 (290)
T ss_pred EeecCCCeEEEEeCChH-HhccccHHHHHHHHHHHHHhhccCcccEE-EEEcCCCccccccCHHHHhhccccccccc---
Confidence 33447899999999999 89999999999999999999999999965 55899999999999999876322111111
Q ss_pred HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCC
Q psy9060 146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL 225 (366)
Q Consensus 146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~ 225 (366)
.+...+..+.+.+||+||+|||+|+|||+||+++||+|||++++ +|++|+.++|++
T Consensus 115 ~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~A------------------------kfg~~~~~~Gi~ 170 (290)
T KOG1680|consen 115 IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGA------------------------KFGFFEIRMGII 170 (290)
T ss_pred cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCC------------------------eecccccccCCc
Confidence 12233334447899999999999999999999999999999988 999999999999
Q ss_pred CChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccc
Q psy9060 226 PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305 (366)
Q Consensus 226 p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~~~ 305 (366)
|++|||+||+|.||..+|++|++||++++|+||+++||||+|+|. ++++.+|.+|+++|++.|..+.
T Consensus 171 p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-------------~~~l~eAv~l~~~Ia~~~~~~v 237 (290)
T KOG1680|consen 171 PSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPS-------------GDALGEAVKLAEQIAKNSPLVV 237 (290)
T ss_pred cCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecc-------------hhHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999999999997 6789999999999999976533
No 3
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.6e-43 Score=337.50 Aligned_cols=209 Identities=23% Similarity=0.386 Sum_probs=183.8
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC--HH-
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT--AD- 138 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~--~~- 138 (366)
|+++.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|.|++++..... ..
T Consensus 7 ~~~i~~~~~~~va~itlnrp~-~~Nal~~~m~~el~~al~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~ 84 (275)
T PRK09120 7 WDTVKVEVEDGIAWVTLNRPE-KRNAMSPTLNREMIDVLDALEFDDDAGVLV-LTGAGDAWSAGMDLKEYFRETDAQPEI 84 (275)
T ss_pred cccEEEEEECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHHhCCCceEEE-EEcCCCceecCcCHHHHhhccccchhH
Confidence 677899999999999999999 799999999999999999999999999755 5888999999999998743211 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
....+....+.++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~p 140 (275)
T PRK09120 85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA------------------------QFGLS 140 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCc------------------------EecCC
Confidence 122233345677889999999999999999999999999999999999987 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|||+ +++.+.+.+++++|+
T Consensus 141 e~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la 207 (275)
T PRK09120 141 EINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPL-------------AQLRARTRELAAKLL 207 (275)
T ss_pred ccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 789999999999999
Q ss_pred cCcc-cccccCC
Q psy9060 299 SGKL-KINRIKP 309 (366)
Q Consensus 299 ~~~~-~~~~~~~ 309 (366)
..++ .+..+|.
T Consensus 208 ~~~p~a~~~~K~ 219 (275)
T PRK09120 208 EKNPVVLRAAKD 219 (275)
T ss_pred hCCHHHHHHHHH
Confidence 8764 3444453
No 4
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=5.3e-43 Score=371.59 Aligned_cols=254 Identities=30% Similarity=0.476 Sum_probs=211.8
Q ss_pred ceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHHH
Q psy9060 64 HFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQV 140 (366)
Q Consensus 64 ~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~~ 140 (366)
++.++. +++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++++|| +|.+++||+|+||+++... ......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~ 84 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPG-SVNKFDRATLASLDQALDAIKAQSSLKGVIL-TSGKDAFIVGADITEFLGLFALPDAEL 84 (714)
T ss_pred eEEEEEccCCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEE-ECCCCccccCcCHHHHhhcccCCHHHH
Confidence 566764 6899999999998 7999999999999999999999999997655 7788899999999998642 222333
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+.+..++++.+|.++||||||+|||+|+|||++|+++||||||++++ +|++||+
T Consensus 85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a------------------------~fglPEv 140 (714)
T TIGR02437 85 IQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTA------------------------KIGLPET 140 (714)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCC------------------------EEecchh
Confidence 4455567789999999999999999999999999999999999999976 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|+|++|..+|++|+++|++++|+||+++||||+++|+ +++.+.|.++++++...
T Consensus 141 ~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-------------~~l~~~a~~~a~~~~~~ 207 (714)
T TIGR02437 141 KLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTA-------------DKLGAAALQLLKDAING 207 (714)
T ss_pred hcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-------------hHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999987 67889999999887665
Q ss_pred cccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhcc
Q psy9060 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTA 360 (366)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~~ 360 (366)
...+.+.+.. +... .......+...++.+++++.++++++||||.+++++++....
T Consensus 208 ~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pap~~~~~~v~~~~~ 263 (714)
T TIGR02437 208 KLDWKAKRQP---KLEP-LKLSKIEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAAR 263 (714)
T ss_pred CCcccccCCC---Cccc-ccccchHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Confidence 3333322211 0000 000113344567888888999999999999999999988754
No 5
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-43 Score=333.23 Aligned_cols=206 Identities=31% Similarity=0.520 Sum_probs=181.4
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC---CHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK---TADQ 139 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~---~~~~ 139 (366)
.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++||| +|.| ++||+|+|++++.... ....
T Consensus 4 ~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl-~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 4 TVLIEIRDGIALLTLNRPE-KLNALNYALIDRLLARLDAIEVDESVRAVIL-TGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred eEEEEEECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEE-EeCCCCceEcCcCHHHHhhhccccchhh
Confidence 5788889999999999998 7899999999999999999999999997654 7777 6999999999875421 1122
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
...+.+..+.++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe 137 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERA------------------------LFAKPE 137 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCC------------------------EecCcc
Confidence 33445556678889999999999999999999999999999999999876 999999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+++|++|++|++++|++++|..+|++|+++|++++++||+++||||+|+|+ +++.+.+.+++++++.
T Consensus 138 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~ 204 (260)
T PRK05980 138 IRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPH-------------EELLPAARALARRIIR 204 (260)
T ss_pred cccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCH-------------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987 6789999999999998
Q ss_pred Ccc-cccccC
Q psy9060 300 GKL-KINRIK 308 (366)
Q Consensus 300 ~~~-~~~~~~ 308 (366)
.++ .+..+|
T Consensus 205 ~~p~a~~~~K 214 (260)
T PRK05980 205 HSPVAVAAIL 214 (260)
T ss_pred CCHHHHHHHH
Confidence 765 333344
No 6
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-43 Score=332.09 Aligned_cols=204 Identities=27% Similarity=0.473 Sum_probs=179.5
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
+.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++ +++++|| ++|.|+.||+|+|++++..... .....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~--~~vr~vv-ltg~g~~F~aG~Dl~~~~~~~~-~~~~~ 76 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPA-KRNALNDGLIAALRAAFARLP--EGVRAVV-LHGEGDHFCAGLDLSELRERDA-GEGMH 76 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCc-cccCCCHHHHHHHHHHHHHhh--cCCeEEE-EECCCCceecCcCHHHHhhccc-hhHHH
Confidence 35778889999999999998 799999999999999999987 7799655 5889999999999999864322 12223
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
....++.++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~ 132 (255)
T PRK08150 77 HSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADEST------------------------YFALPEGQR 132 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCC------------------------EEecccccc
Confidence 34556778889999999999999999999999999999999999877 999999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..+|++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++|+..+.
T Consensus 133 Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~ 199 (255)
T PRK08150 133 GIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPA-------------GEALDKAMELARRIAQNAP 199 (255)
T ss_pred CCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-------------hHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999997 6789999999999998764
Q ss_pred c-ccccC
Q psy9060 303 K-INRIK 308 (366)
Q Consensus 303 ~-~~~~~ 308 (366)
. +...|
T Consensus 200 ~a~~~~K 206 (255)
T PRK08150 200 LTNFAVL 206 (255)
T ss_pred HHHHHHH
Confidence 3 33344
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-43 Score=332.21 Aligned_cols=206 Identities=33% Similarity=0.528 Sum_probs=180.8
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK 141 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~ 141 (366)
++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++|+|| ++|.|+.||+|+||+++......+
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPK-ALNALNDALMDELGAALAAFDADEGIGAIV-ITGSEKAFAAGADIKEMADLSFMD--- 77 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEE-EECCCCceECCcChHhHhccchhH---
Confidence 346788889999999999998 789999999999999999999999999755 578899999999999876432111
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221 (366)
Q Consensus 142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~ 221 (366)
.+...+..++.+|.++||||||+|||+|+|||++|+++||+||+++++ +|++||++
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~ 133 (257)
T PRK05862 78 VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA------------------------KFGQPEIK 133 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCC------------------------EEeCchhc
Confidence 122334457788999999999999999999999999999999999876 99999999
Q ss_pred ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301 (366)
Q Consensus 222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~ 301 (366)
+|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++++..+
T Consensus 134 ~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~ 200 (257)
T PRK05862 134 LGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPA-------------DKLLDEALAAATTIASFS 200 (257)
T ss_pred cCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCH-------------hHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999987 679999999999998875
Q ss_pred c-cccccCC
Q psy9060 302 L-KINRIKP 309 (366)
Q Consensus 302 ~-~~~~~~~ 309 (366)
. .+..+|.
T Consensus 201 ~~a~~~~K~ 209 (257)
T PRK05862 201 LPAVMMAKE 209 (257)
T ss_pred HHHHHHHHH
Confidence 4 3444453
No 8
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-43 Score=331.92 Aligned_cols=199 Identities=37% Similarity=0.630 Sum_probs=179.2
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI 143 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 143 (366)
.+.++++++|++|+||||+ + |++|.+|+++|.++++.++.|++|++|| ++|.|+.||+|+|++++...........+
T Consensus 3 ~i~~~~~~~v~~itl~rp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 79 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPP-A-NALSSQVLHELSELLDQVEKDDNVRVVV-IHGEGRFFSAGADIKEFTSVTEAEQATEL 79 (257)
T ss_pred eEEEEeeCCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCceEeCcCHHHHhccCchhhHHHH
Confidence 5778889999999999997 5 9999999999999999999999999755 58889999999999988643322233334
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060 144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG 223 (366)
Q Consensus 144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G 223 (366)
....+.++.++.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+++|
T Consensus 80 ~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~G 135 (257)
T PRK07658 80 AQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESA------------------------KLGLPELNLG 135 (257)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCC------------------------cccCcccccC
Confidence 4556778999999999999999999999999999999999999876 9999999999
Q ss_pred CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
++|++|++++|++++|..+|++|+++|++++++||+++||||+++|+ +++.+.+.+++++++..++
T Consensus 136 l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~~ 201 (257)
T PRK07658 136 LIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE-------------ETLLDDAKKLAKKIAGKSP 201 (257)
T ss_pred CCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCh-------------hHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999987 6788999999999988764
No 9
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-43 Score=335.06 Aligned_cols=209 Identities=29% Similarity=0.509 Sum_probs=182.7
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC------
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK------ 135 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~------ 135 (366)
++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++....
T Consensus 5 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06142 5 YESFTVELADHVAQVTLNRPG-KGNAMNPAFWSELPEIFRWLDADPEVRAVV-LSGSGKHFSYGIDLPAMAGVFGQLGKD 82 (272)
T ss_pred cceEEEEecCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCceecccCHHHHhhhccccccc
Confidence 356888999999999999999 799999999999999999999999999755 588899999999999875411
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccc
Q psy9060 136 ----TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDK 211 (366)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~ 211 (366)
.......+...+++++..+.++||||||+|||+|+|||++|+++||+||+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a---------------------- 140 (272)
T PRK06142 83 GLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADA---------------------- 140 (272)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCC----------------------
Confidence 111222334456778889999999999999999999999999999999999987
Q ss_pred cccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHH
Q psy9060 212 KTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAV 291 (366)
Q Consensus 212 ~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~ 291 (366)
+|++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+. +++.+.+.
T Consensus 141 --~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~------------~~l~~~a~ 206 (272)
T PRK06142 141 --KFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDA------------DALLAAAH 206 (272)
T ss_pred --eecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCH------------HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999841 57889999
Q ss_pred HHHHHHhcCccc-ccccC
Q psy9060 292 NTASQLASGKLK-INRIK 308 (366)
Q Consensus 292 ~~a~~la~~~~~-~~~~~ 308 (366)
+++++|+..+.. +...|
T Consensus 207 ~~a~~ia~~~~~a~~~~K 224 (272)
T PRK06142 207 ATAREIAAKSPLAVRGTK 224 (272)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 999999987543 44444
No 10
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-43 Score=332.13 Aligned_cols=206 Identities=26% Similarity=0.385 Sum_probs=182.5
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
+++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.+..|+++++|| ++|.|+.||+|+|++++........
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~- 78 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPE-ARNALSAALRRALFAALAEADADDDVDVVV-LTGADPAFCAGLDLKELGGDGSAYG- 78 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCCccCCcCHHHHhcccchhh-
Confidence 3457888999999999999998 789999999999999999999999999755 5788999999999998864322111
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
. ....+.++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~ 132 (258)
T PRK06190 79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERA------------------------RFADTHA 132 (258)
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCC------------------------EEECccc
Confidence 1 2345678889999999999999999999999999999999999987 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+++|+ +++.+.+.+++++|++.
T Consensus 133 ~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~ 199 (258)
T PRK06190 133 RVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPH-------------DELLPRARRLAASIAGN 199 (258)
T ss_pred ccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCH-------------hHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999987 67899999999999987
Q ss_pred cc-cccccC
Q psy9060 301 KL-KINRIK 308 (366)
Q Consensus 301 ~~-~~~~~~ 308 (366)
+. .+...|
T Consensus 200 ~~~a~~~~K 208 (258)
T PRK06190 200 NPAAVRALK 208 (258)
T ss_pred CHHHHHHHH
Confidence 64 344444
No 11
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-43 Score=333.90 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=183.8
Q ss_pred CCcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-CHH
Q psy9060 61 STKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-TAD 138 (366)
Q Consensus 61 ~~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-~~~ 138 (366)
.++.+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|++||+|+||+++.... ...
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~ 86 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPG-ALNAADARMHRELADIWRDVDRDPDVRVVL-IRGEGKAFSAGGDLALVEEMADDFE 86 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHhhhCCCceEEE-EECCCCCcccccCHHHHhhccCcHH
Confidence 356788887 5789999999998 789999999999999999999999999755 588889999999999875422 222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
....+.....+++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p 142 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDA------------------------RIIDG 142 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCC------------------------EEeCc
Confidence 233344455678889999999999999999999999999999999999987 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+++|+ +++.+.+.+++++|+
T Consensus 143 e~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la 209 (268)
T PRK07327 143 HTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-------------DELLPKALEVAERLA 209 (268)
T ss_pred ccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 679999999999999
Q ss_pred cCccc-ccccC
Q psy9060 299 SGKLK-INRIK 308 (366)
Q Consensus 299 ~~~~~-~~~~~ 308 (366)
+.+.. +..+|
T Consensus 210 ~~~~~a~~~~K 220 (268)
T PRK07327 210 AGSQTAIRWTK 220 (268)
T ss_pred cCCHHHHHHHH
Confidence 88653 33344
No 12
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=7.4e-43 Score=370.22 Aligned_cols=249 Identities=45% Similarity=0.715 Sum_probs=208.7
Q ss_pred EEeCCEEEEEecCC-CCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHH
Q psy9060 68 KAVGDVLVVTLDSP-GVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKS 146 (366)
Q Consensus 68 ~~~~~Va~Itlnrp-~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 146 (366)
+.+++|++|||||| + +.|++|.+|+++|.++++.++.|+++++|||++|.|++||+|+||+++....+......+...
T Consensus 6 ~~~~~Va~itlnrp~~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (699)
T TIGR02440 6 VREDGIAILTIDVPGE-KMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQ 84 (699)
T ss_pred EcCCCEEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHH
Confidence 34689999999999 5 789999999999999999999999999888778899999999999998643333334444556
Q ss_pred HHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCC
Q psy9060 147 GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLP 226 (366)
Q Consensus 147 ~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p 226 (366)
+++++..+.++||||||+|||+|+|||++|+|+||+|||++++++ +|++||+++|++|
T Consensus 85 ~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a----------------------~fg~pev~lGl~p 142 (699)
T TIGR02440 85 GQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKT----------------------VLGLPEVQLGLLP 142 (699)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCc----------------------EEechhhcccCCC
Confidence 678899999999999999999999999999999999999987656 9999999999999
Q ss_pred ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc
Q psy9060 227 GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306 (366)
Q Consensus 227 ~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~~~~ 306 (366)
++|++++|+|++|..+|++|+++|+.++++||+++||||+++|+ +++.+.|.++|++ ..+ .++
T Consensus 143 ~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~-------------~~l~~~a~~~A~~--~~~--~~~ 205 (699)
T TIGR02440 143 GSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQ-------------SILLDTAVEMALK--GKP--IRK 205 (699)
T ss_pred CccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecCh-------------hHHHHHHHHHHHh--CCC--CCC
Confidence 99999999999999999999999999999999999999999987 6788888988875 111 011
Q ss_pred cCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhcc
Q psy9060 307 IKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTA 360 (366)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~~ 360 (366)
...+. .++ ....+......++.+.+.+.++++|+||||.+++++++...+
T Consensus 206 ~~~~~-~~~---~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~ 255 (699)
T TIGR02440 206 PLSLQ-ERL---LEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLA 255 (699)
T ss_pred Cccch-hhh---cccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhc
Confidence 10110 111 122244556678888999999999999999999999987653
No 13
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-43 Score=331.41 Aligned_cols=208 Identities=30% Similarity=0.457 Sum_probs=183.3
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
.+.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.| ++||+|+|++++......+..
T Consensus 7 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-ltg~g~~~F~aG~Dl~~~~~~~~~~~~ 84 (262)
T PRK06144 7 TDELLLEVRGGIARITFNRPA-ARNAMTWAMYEGLAEICEAIAADPSIRAVV-LRGAGDKAFVAGTDIAQFRAFSTAEDA 84 (262)
T ss_pred CCceEEEeeCCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHHhcCCCceEEE-EecCCCCceecCcCHHHHhhccchhHH
Confidence 456888999999999999998 789999999999999999999999999765 47776 699999999987653222222
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+...+.+++..+.++||||||+|||+|+|||++|+++||+|||++++ +|++||+
T Consensus 85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~ 140 (262)
T PRK06144 85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSA------------------------RFGFPIA 140 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCC------------------------EeechhH
Confidence 3344556778889999999999999999999999999999999999987 9999999
Q ss_pred h-ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 221 M-LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 221 ~-~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+ +|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|+ +++.+.+.+++++|+.
T Consensus 141 ~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~i~~ 207 (262)
T PRK06144 141 RTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVED-------------AALDARADALAELLAA 207 (262)
T ss_pred HhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-------------HHHHHHHHHHHHHHHh
Confidence 7 9999999999999999999999999999999999999999999999997 7899999999999998
Q ss_pred Cccc-ccccC
Q psy9060 300 GKLK-INRIK 308 (366)
Q Consensus 300 ~~~~-~~~~~ 308 (366)
.+.. +...|
T Consensus 208 ~~~~a~~~~K 217 (262)
T PRK06144 208 HAPLTLRATK 217 (262)
T ss_pred CCHHHHHHHH
Confidence 7643 44444
No 14
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=6.9e-43 Score=330.46 Aligned_cols=208 Identities=34% Similarity=0.608 Sum_probs=183.6
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQ 139 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~ 139 (366)
+++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.| +.||+|+|++++.... ...
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vv-l~g~g~~~F~aG~Dl~~~~~~~-~~~ 78 (260)
T PRK05809 2 ELKNVILEKEGHIAVVTINRPK-ALNALNSETLKELDTVLDDIENDDNVYAVI-LTGAGEKAFVAGADISEMKDLN-EEE 78 (260)
T ss_pred CcceEEEEEeCCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHhcCCCcEEEE-EEcCCCCceeeCcChHhHhccC-hHH
Confidence 3567888999999999999998 789999999999999999999999999755 57777 8999999999886532 222
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
...+....++++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a------------------------~f~~pe 134 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKA------------------------KFGQPE 134 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCC------------------------EEeCcc
Confidence 33344455678899999999999999999999999999999999999876 999999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+++|++|++|++++|++++|..+|++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++++.
T Consensus 135 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~ 201 (260)
T PRK05809 135 VGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEP-------------EKLMEEAKALANKIAA 201 (260)
T ss_pred cccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-------------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987 6788999999999998
Q ss_pred Cccc-ccccC
Q psy9060 300 GKLK-INRIK 308 (366)
Q Consensus 300 ~~~~-~~~~~ 308 (366)
.+.. +...|
T Consensus 202 ~~~~a~~~~K 211 (260)
T PRK05809 202 NAPIAVKLCK 211 (260)
T ss_pred CCHHHHHHHH
Confidence 7543 43344
No 15
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.1e-42 Score=369.47 Aligned_cols=253 Identities=46% Similarity=0.761 Sum_probs=211.0
Q ss_pred ceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060 64 HFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 64 ~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
.+.+++ +++|++|+||||+.+.|++|.+|+++|.++++.++.|++++++||+++.+++||+|+||+++....+......
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 466777 6899999999993278999999999999999999999999987775555689999999999865333333334
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
+...++.++.++.++||||||+|||+|+|||++|+++||+||+++++++ +|++||+++
T Consensus 86 ~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a----------------------~fg~pe~~l 143 (708)
T PRK11154 86 LARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKT----------------------VLGLPEVQL 143 (708)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCc----------------------eEeCccccC
Confidence 4556677899999999999999999999999999999999999998666 899999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..+|++|+++|++++|+||+++||||+++|+ +++.+.+.++|+++...
T Consensus 144 Gl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~A~~~~~~-- 208 (708)
T PRK11154 144 GLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPH-------------SILLEVAVELAKKGKPA-- 208 (708)
T ss_pred CCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-------------HHHHHHHHHHHHhcCCc--
Confidence 999999999999999999999999999999999999999999999987 67888999999874211
Q ss_pred cccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060 303 KINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT 359 (366)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~ 359 (366)
++..+.. .. .....+..+...+..++.++.++++|+||||..++++++...
T Consensus 209 --~~~~~~~-~~---~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~ 259 (708)
T PRK11154 209 --RRPLPVR-ER---LLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGL 259 (708)
T ss_pred --cCcCCch-hh---hcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Confidence 1111110 00 011224456778999999999999999999999999998754
No 16
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-43 Score=331.68 Aligned_cols=204 Identities=27% Similarity=0.399 Sum_probs=174.9
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 144 (366)
|.++++++|++||||||+ +.|++|.+|+++|.++++.++.|++++++| ++|.|+.||+|+|++++....... ...+.
T Consensus 1 ~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vrvvv-l~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 77 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPA-KRNAFDSAMLDDLALALGEYEADDELRVAV-LFAHGEHFTAGLDLADVAPKLAAG-GFPFP 77 (255)
T ss_pred CeEEEECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEE-EECCCCCCcCCcCHHHHhhccccc-hhhhh
Confidence 356778999999999998 789999999999999999999999999754 588999999999999875421111 11121
Q ss_pred HH-HHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060 145 KS-GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG 223 (366)
Q Consensus 145 ~~-~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G 223 (366)
.. ...+...+.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe~~~G 133 (255)
T PRK06563 78 EGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNT------------------------RFAQLEVQRG 133 (255)
T ss_pred hhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCC------------------------EEeChhhhcC
Confidence 11 2223345889999999999999999999999999999999987 9999999999
Q ss_pred CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060 224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 303 (366)
Q Consensus 224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~ 303 (366)
++|++|++++|++++|..+|++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++++..+..
T Consensus 134 l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~ 200 (255)
T PRK06563 134 ILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-------------GEQLERAIELAERIARAAPL 200 (255)
T ss_pred CCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-------------HHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999987 67899999999999877543
Q ss_pred -ccccC
Q psy9060 304 -INRIK 308 (366)
Q Consensus 304 -~~~~~ 308 (366)
+...|
T Consensus 201 a~~~~K 206 (255)
T PRK06563 201 GVQATL 206 (255)
T ss_pred HHHHHH
Confidence 33344
No 17
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=3.1e-43 Score=332.29 Aligned_cols=209 Identities=39% Similarity=0.645 Sum_probs=183.0
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK 141 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~ 141 (366)
+..+.++.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++||+|| ++|.|++||+|+||+++..........
T Consensus 4 ~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vv-ltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 4 YETILVEREDGIAVITLNRPE-KLNALNLEMLDELAEALDEAEADPDVRVVV-LTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCeeEEEeeCCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCceecccCHHHHhcccchhHHH
Confidence 456778888889999999999 679999999999999999999999999755 588889999999999987511112222
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221 (366)
Q Consensus 142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~ 221 (366)
.+....+.++..+.++||||||+|||+|+|||++|+++||+|||++++ +|++||++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a------------------------~f~~pe~~ 137 (257)
T COG1024 82 NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA------------------------KFGLPEVN 137 (257)
T ss_pred HHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCc------------------------EecCcccc
Confidence 455666789999999999999999999999999999999999999987 99999999
Q ss_pred ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301 (366)
Q Consensus 222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~ 301 (366)
+|++|++|++++|+|++|..++++|++||+.++++||+++||||+++++. +++++.+.+++++++..+
T Consensus 138 iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~------------~~l~~~a~~~a~~~a~~~ 205 (257)
T COG1024 138 LGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDA------------EELLERALELARRLAAPP 205 (257)
T ss_pred cccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCH------------HHHHHHHHHHHHHHccCH
Confidence 99999889999999999999999999999999999999999999999851 589999999999998744
Q ss_pred ccccccC
Q psy9060 302 LKINRIK 308 (366)
Q Consensus 302 ~~~~~~~ 308 (366)
..+..+|
T Consensus 206 ~a~~~~k 212 (257)
T COG1024 206 LALAATK 212 (257)
T ss_pred HHHHHHH
Confidence 4444443
No 18
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=4.5e-43 Score=331.60 Aligned_cols=208 Identities=20% Similarity=0.349 Sum_probs=178.3
Q ss_pred cceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060 63 KHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 63 ~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
+.+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.| ++||+|+|++++.........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~el~~~l~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~~~~~~~ 79 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQ-VRNAFRPLTVKEIIQALDDAREDPDIGVVI-LTGAGDKAFCSGGDQKVRGDYGYIDDS 79 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EEeCCCCceEeCcChHhHhhccccchh
Confidence 3477888 7999999999998 789999999999999999999999999755 57777 799999999987432110110
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
.........++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~ 135 (259)
T TIGR01929 80 GVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENA------------------------RFGQTGP 135 (259)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCC------------------------EecCccc
Confidence 0001123467788999999999999999999999999999999999876 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|++++|..+|++|+++|++++++||+++||||+|+|+ +++.+.+.+++++|+..
T Consensus 136 ~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~ 202 (259)
T TIGR01929 136 KVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPL-------------ADLEKETVRWCREILQK 202 (259)
T ss_pred ccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCH-------------HHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999997 78999999999999987
Q ss_pred ccc-ccccCC
Q psy9060 301 KLK-INRIKP 309 (366)
Q Consensus 301 ~~~-~~~~~~ 309 (366)
+.. +..+|.
T Consensus 203 ~~~a~~~~K~ 212 (259)
T TIGR01929 203 SPMAIRMLKA 212 (259)
T ss_pred CHHHHHHHHH
Confidence 643 444453
No 19
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=7.7e-43 Score=329.30 Aligned_cols=203 Identities=33% Similarity=0.543 Sum_probs=179.7
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI 143 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 143 (366)
.+.++++++|++||||||+ +.|++|.+|+++|.++++.++.|++||+|| ++|.|+.||+|+|++++...... ..+
T Consensus 3 ~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~~~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~---~~~ 77 (255)
T PRK09674 3 ELLVSRQQRVLLLTLNRPE-ARNALNNALLTQLVNELEAAATDTSIGVCV-ITGNARFFAAGADLNEMAEKDLA---ATL 77 (255)
T ss_pred eEEEEeECCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCcEEEE-EECCCCceecccChHhHhccchh---hhH
Confidence 4677888999999999999 789999999999999999999999999755 58899999999999987542211 122
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060 144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG 223 (366)
Q Consensus 144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G 223 (366)
.....+++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~G 133 (255)
T PRK09674 78 NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENA------------------------RFGLPEITLG 133 (255)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCC------------------------EEeCchhhcC
Confidence 2344567889999999999999999999999999999999999987 9999999999
Q ss_pred CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060 224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 303 (366)
Q Consensus 224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~ 303 (366)
++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++++..+..
T Consensus 134 l~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a~~l~~~~~~ 200 (255)
T PRK09674 134 IMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPP-------------ELTLERALQLASKIARHSPL 200 (255)
T ss_pred CCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh-------------HHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999987 67889999999999987643
Q ss_pred -ccccC
Q psy9060 304 -INRIK 308 (366)
Q Consensus 304 -~~~~~ 308 (366)
+..+|
T Consensus 201 a~~~~K 206 (255)
T PRK09674 201 ALRAAK 206 (255)
T ss_pred HHHHHH
Confidence 44444
No 20
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=5.9e-43 Score=330.30 Aligned_cols=206 Identities=20% Similarity=0.306 Sum_probs=179.8
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVK 141 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 141 (366)
+.+.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.| +.||+|+||+++...... ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-l~g~g~~~F~aG~Dl~~~~~~~~~--~~ 77 (256)
T TIGR03210 2 EDILYEKRNGIAWIMINRPA-KMNAFRGQTCDELIHALKDAGYDRQIGVIV-LAGAGDKAFCTGGDQSTHDGGYDG--RG 77 (256)
T ss_pred CceEEEeeCCEEEEEEcCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EecCCCCceecCcChHHHhccccc--hh
Confidence 45788889999999999999 899999999999999999999999999765 47776 699999999987432111 11
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221 (366)
Q Consensus 142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~ 221 (366)
.+......++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||++
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~~ 133 (256)
T TIGR03210 78 TIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKA------------------------QFGQVGPK 133 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCC------------------------EEeccccc
Confidence 122345678889999999999999999999999999999999999887 99999999
Q ss_pred ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301 (366)
Q Consensus 222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~ 301 (366)
+|++|+++++++|++++|..+|++|+++|++++|+||+++||||+|+|+ +++.+.+.+++++|+..+
T Consensus 134 ~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ia~~~ 200 (256)
T TIGR03210 134 VGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPH-------------DQLDAEVQKWCDEIVEKS 200 (256)
T ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCH-------------HHHHHHHHHHHHHHHhCC
Confidence 9999888889999999999999999999999999999999999999987 679999999999999876
Q ss_pred cc-ccccCC
Q psy9060 302 LK-INRIKP 309 (366)
Q Consensus 302 ~~-~~~~~~ 309 (366)
.. +..+|.
T Consensus 201 ~~a~~~~K~ 209 (256)
T TIGR03210 201 PTAIAIAKR 209 (256)
T ss_pred HHHHHHHHH
Confidence 43 444453
No 21
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.2e-43 Score=331.05 Aligned_cols=208 Identities=21% Similarity=0.389 Sum_probs=182.3
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
....+.++.+++|++|+||||+ +.|++|.+|+++|.++++.++.|++|+++| ++|.|+.||+|+|++++.........
T Consensus 9 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~ 86 (266)
T PRK08139 9 EAPLLLREDRDGVATLTLNRPQ-AFNALSEAMLAALQAALDAIAADPSVRVVV-LAAAGKAFCAGHDLKEMRAARGLAYF 86 (266)
T ss_pred cCCceEEEeeCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEE-EecCCCcceeccCHHHHhcccchhHH
Confidence 4467888899999999999998 789999999999999999999999999755 58899999999999987643222233
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~ 142 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTA------------------------RFAVPGV 142 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCC------------------------EEeCccc
Confidence 3444556778899999999999999999999999999999999999987 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|+++ +.+|+|++|..+|++|+++|++++|+||+++||||+|+|+ +++.+.+.+++++|+..
T Consensus 143 ~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~ 208 (266)
T PRK08139 143 NIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPA-------------DALDAAVARLAAVIAAK 208 (266)
T ss_pred CcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeCh-------------hHHHHHHHHHHHHHHhC
Confidence 999999865 5689999999999999999999999999999999999997 67899999999999987
Q ss_pred ccc-ccccC
Q psy9060 301 KLK-INRIK 308 (366)
Q Consensus 301 ~~~-~~~~~ 308 (366)
+.. +...|
T Consensus 209 ~~~a~~~~K 217 (266)
T PRK08139 209 SPAAVRIGK 217 (266)
T ss_pred CHHHHHHHH
Confidence 643 33344
No 22
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.2e-43 Score=329.96 Aligned_cols=207 Identities=27% Similarity=0.454 Sum_probs=179.9
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TADQ 139 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~~ 139 (366)
++.+.++.+++|++|+||||+ +.|++|.+|+++|.+++++++ |+++++|| ++|.|+.||+|+|++++.... ....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~~~~~~-d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~ 79 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPD-KLNSFTREMHRELREALDQVE-DDGARALL-LTGAGRGFCAGQDLADRDVTPGGAMPD 79 (262)
T ss_pred CceEEEEeECCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHhc-CCCceEEE-EECCCCCcccCcChHHHhccccccchh
Confidence 456888899999999999998 789999999999999999999 99999655 588999999999999875321 1111
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 140 -VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 140 -~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
...+...+..++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p 135 (262)
T PRK08140 80 LGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSA------------------------SFIQA 135 (262)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCC------------------------EEecc
Confidence 11222334567888999999999999999999999999999999999987 89999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|++++|++++|..++++|+++|++++++||+++||||+|+|+ +++.+.+.+++++|+
T Consensus 136 e~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ia 202 (262)
T PRK08140 136 FVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDD-------------AALADEAQQLAAHLA 202 (262)
T ss_pred ccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeCh-------------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 678899999999998
Q ss_pred cCccc-ccccC
Q psy9060 299 SGKLK-INRIK 308 (366)
Q Consensus 299 ~~~~~-~~~~~ 308 (366)
..+.. +..+|
T Consensus 203 ~~~~~a~~~~K 213 (262)
T PRK08140 203 TQPTRGLALIK 213 (262)
T ss_pred hCCHHHHHHHH
Confidence 87643 44444
No 23
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.9e-43 Score=329.43 Aligned_cols=206 Identities=31% Similarity=0.489 Sum_probs=180.3
Q ss_pred cceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060 63 KHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 63 ~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
.++.++. +++|++|+||||+ +.|++|.+|+++|.++++.++.|++||+|| ++|.| ++||+|+|++++.... ....
T Consensus 6 ~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~~-~~~~ 82 (256)
T PRK06143 6 AHAGVTRDDRGVATLTIRNAG-SLNILGTPVILALTQALRWLAADPDVRVLV-LRGAGEKAFIGGADIKEMATLD-QASA 82 (256)
T ss_pred ccceeeecCCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhcCCCcEEEE-EEeCCCCcccCCcCHHHHhhcC-hhhH
Confidence 4566774 5889999999999 789999999999999999999999999755 57777 6999999999886432 2233
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+...++.++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~ 138 (256)
T PRK06143 83 EAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDA------------------------QFGMPEV 138 (256)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCC------------------------EEeCCcc
Confidence 3445566788999999999999999999999999999999999999877 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|+ |++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+ +++.+.+.+++++++..
T Consensus 139 ~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~ 204 (256)
T PRK06143 139 RVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPL-------------AELDAAVERLAASLAGC 204 (256)
T ss_pred ccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-------------HHHHHHHHHHHHHHHcC
Confidence 9997 888889999999999999999999999999999999999999987 78999999999999987
Q ss_pred ccc-ccccCC
Q psy9060 301 KLK-INRIKP 309 (366)
Q Consensus 301 ~~~-~~~~~~ 309 (366)
+.. +..+|.
T Consensus 205 ~~~a~~~~K~ 214 (256)
T PRK06143 205 GPQALRQQKR 214 (256)
T ss_pred CHHHHHHHHH
Confidence 643 444453
No 24
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=9.9e-43 Score=328.71 Aligned_cols=205 Identities=27% Similarity=0.421 Sum_probs=177.7
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-HHH-HHH
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-ADQ-VKQ 142 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-~~~-~~~ 142 (366)
+.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|+ +++|| ++|.|+.||+|+|++++..... ... ...
T Consensus 1 ~~~e~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~-v~~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 77 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPD-KLNSFTAEMHLELREALERVERDD-ARALM-LTGAGRGFCAGQDLSERNPTPGGAPDLGRT 77 (256)
T ss_pred CeEEEECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCC-cEEEE-EECCCCCcccCcCHHHHhhccccchhHHHH
Confidence 356788999999999998 789999999999999999999998 99755 5888999999999998764211 111 112
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
+...+..++..+..+||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 78 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a------------------------~f~~pe~~l 133 (256)
T TIGR02280 78 IETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESA------------------------RFIQAFAKI 133 (256)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCC------------------------EEeChhhhc
Confidence 22334567788999999999999999999999999999999999987 899999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++++..+.
T Consensus 134 G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~ 200 (256)
T TIGR02280 134 GLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDD-------------AALMDEAQALAVHLAAQPT 200 (256)
T ss_pred CCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeCh-------------HHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999997 6789999999999988764
Q ss_pred -cccccCC
Q psy9060 303 -KINRIKP 309 (366)
Q Consensus 303 -~~~~~~~ 309 (366)
.+..+|.
T Consensus 201 ~~~~~~K~ 208 (256)
T TIGR02280 201 RGLALTKR 208 (256)
T ss_pred HHHHHHHH
Confidence 3444443
No 25
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-42 Score=328.49 Aligned_cols=204 Identities=30% Similarity=0.497 Sum_probs=179.6
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
.+.++++++|++||||||+ + |++|.+|+.+|.++++.++.|+++++|| ++|.| ++||+|+||+++.... ......
T Consensus 4 ~v~~~~~~~v~~itlnrp~-~-Nal~~~~~~~l~~al~~~~~d~~vrvvV-l~g~g~~~F~aG~Dl~~~~~~~-~~~~~~ 79 (258)
T PRK09076 4 ELDLEIDGHVAILTLNNPP-A-NTWTADSLQALKQLVLELNADKDVYALV-ITGDGEKFFSAGADLNLFADGD-KAVARE 79 (258)
T ss_pred EEEEEEECCEEEEEECCCC-c-CCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCceEeCcCHHHHhhcC-hhhHHH
Confidence 5788889999999999997 5 9999999999999999999999999755 57776 6899999999875422 222233
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
+...+.+++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 80 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~ 135 (258)
T PRK09076 80 MARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQA------------------------QMALPEASV 135 (258)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCC------------------------EeeCccccc
Confidence 44556778899999999999999999999999999999999999877 999999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++++..+.
T Consensus 136 Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~~ 202 (258)
T PRK09076 136 GLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEK-------------GEAREAALALAQKVANQSP 202 (258)
T ss_pred CCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCc-------------hhHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999997 6788899999999998764
Q ss_pred c-ccccC
Q psy9060 303 K-INRIK 308 (366)
Q Consensus 303 ~-~~~~~ 308 (366)
. +...|
T Consensus 203 ~a~~~~K 209 (258)
T PRK09076 203 SAVAACK 209 (258)
T ss_pred HHHHHHH
Confidence 3 43344
No 26
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.6e-43 Score=330.50 Aligned_cols=207 Identities=24% Similarity=0.428 Sum_probs=180.5
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCH-HHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-----H
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNS-EVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-----A 137 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~-~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-----~ 137 (366)
.+.++++++|++||||||+ +.|++|. +|+++|.++++.++.|++|++|| ++|.|++||+|+||+++..... .
T Consensus 4 ~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (266)
T PRK09245 4 FLLVERDGHIVTLTMNRPE-TRNALSDNDAVDALVAACAAINADRSVRAVI-LTGAGTAFSSGGNVKDMRARVGAFGGSP 81 (266)
T ss_pred ceEEEEECCEEEEEECCcc-cccCCChHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcccCcCHHHHhhccccccccc
Confidence 5788889999999999998 7899995 99999999999999999999755 5889999999999998854211 1
Q ss_pred HH-HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccc
Q psy9060 138 DQ-VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLG 216 (366)
Q Consensus 138 ~~-~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
.. ...+...+.+++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~ 137 (266)
T PRK09245 82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETA------------------------RFA 137 (266)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCC------------------------EEc
Confidence 11 12233345677889999999999999999999999999999999999887 999
Q ss_pred ccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060 217 LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 296 (366)
Q Consensus 217 ~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~ 296 (366)
+||+++|++|++|+++++++++|..+|++|+++|++++|+||+++||||+|+|+ +++++.+.+++++
T Consensus 138 ~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ 204 (266)
T PRK09245 138 ESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPA-------------DQLLPAARALAER 204 (266)
T ss_pred ccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 6788999999999
Q ss_pred HhcCccc-ccccCC
Q psy9060 297 LASGKLK-INRIKP 309 (366)
Q Consensus 297 la~~~~~-~~~~~~ 309 (366)
|+..+.. +..+|.
T Consensus 205 l~~~~~~a~~~~K~ 218 (266)
T PRK09245 205 IAANPPHALRLTKR 218 (266)
T ss_pred HHhCCHHHHHHHHH
Confidence 9988653 433443
No 27
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-42 Score=328.88 Aligned_cols=205 Identities=32% Similarity=0.497 Sum_probs=180.3
Q ss_pred CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060 62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
.+++.++. +++|++|+||||+ +.|++|.+|+.+|.++++.+++|+++++|| ++|.|+.||+|+|++++..... .
T Consensus 6 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~---~ 80 (261)
T PRK08138 6 TDVVLLERPADGVALLRLNRPE-ARNALNMEVRQQLAEHFTELSEDPDIRAIV-LTGGEKVFAAGADIKEFATAGA---I 80 (261)
T ss_pred CCCEEEEEccCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEE-EECCCCCeeCCcCHHHHhccch---h
Confidence 45677777 6889999999999 789999999999999999999999999755 5788899999999998764221 1
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+....++++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~ 136 (261)
T PRK08138 81 EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESA------------------------SFGQPEI 136 (261)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCC------------------------EeeCccc
Confidence 2233455678889999999999999999999999999999999999876 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++++..
T Consensus 137 ~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~ 203 (261)
T PRK08138 137 KVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVED-------------EQTLPRALELAREIARM 203 (261)
T ss_pred ccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-------------hHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987 67888999999999876
Q ss_pred ccc-ccccC
Q psy9060 301 KLK-INRIK 308 (366)
Q Consensus 301 ~~~-~~~~~ 308 (366)
+.. +..+|
T Consensus 204 ~~~a~~~~K 212 (261)
T PRK08138 204 PPLALAQIK 212 (261)
T ss_pred CHHHHHHHH
Confidence 543 33344
No 28
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-42 Score=328.95 Aligned_cols=208 Identities=25% Similarity=0.422 Sum_probs=179.7
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TADQ 139 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~~ 139 (366)
++.+.++.+++|++||||||+ +.|++|.+|+++|.++++.++.|+++|+|| ++|.|+.||+|+|++++.... +...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (262)
T PRK05995 3 YETLEIEQRGQVATVTLNRPD-VRNAFNETVIAELTAAFRALDADDSVRAVV-LAGAGKAFCAGADLNWMKKMAGYSDDE 80 (262)
T ss_pred CceEEEEeeCCEEEEEEcCcc-cccCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCccccCcCHHHHhhhcccCchh
Confidence 566888999999999999998 789999999999999999999999999755 588899999999999875321 1111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
.......+.+++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe 136 (262)
T PRK05995 81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHA------------------------VFCLSE 136 (262)
T ss_pred hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCC------------------------EEeCcc
Confidence 11223345678889999999999999999999999999999999999987 999999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+++|++|++|++ ++++++|..+|++|+++|++++|+||+++||||+|+|+ +++.+.+.+++++++.
T Consensus 137 ~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~ 202 (262)
T PRK05995 137 VRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPA-------------EALDAKVDELLAALVA 202 (262)
T ss_pred cccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCH-------------HHHHHHHHHHHHHHHh
Confidence 999999988765 58999999999999999999999999999999999987 6789999999999998
Q ss_pred Cccc-ccccCC
Q psy9060 300 GKLK-INRIKP 309 (366)
Q Consensus 300 ~~~~-~~~~~~ 309 (366)
.+.. +..+|.
T Consensus 203 ~~~~a~~~~K~ 213 (262)
T PRK05995 203 NSPQAVRAGKR 213 (262)
T ss_pred CCHHHHHHHHH
Confidence 7543 444443
No 29
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.8e-42 Score=365.65 Aligned_cols=253 Identities=32% Similarity=0.519 Sum_probs=210.8
Q ss_pred ceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHHH
Q psy9060 64 HFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQV 140 (366)
Q Consensus 64 ~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~~ 140 (366)
.+.++. +++|++||||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+||+++... ......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 84 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPG-SVNKLDRATLASLGEALDALEAQSDLKGLL-LTSAKDAFIVGADITEFLSLFAAPEEEL 84 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCcEEEE-EECCCCccccCcCHHHHhhhccCCHHHH
Confidence 466774 7899999999999 799999999999999999999999999765 57888999999999988642 122233
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+...++.++.++.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 85 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a------------------------~f~~pe~ 140 (715)
T PRK11730 85 SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDA------------------------RIGLPET 140 (715)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCC------------------------EEeCchh
Confidence 4455566788899999999999999999999999999999999999877 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|+|++|..+|++|+++|++++|+||+++||||+|+|+ +++.+.+.+++++++..
T Consensus 141 ~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 141 KLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAP-------------EKLQEAALALLKQAIAG 207 (715)
T ss_pred hcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-------------HHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999987 67889999999999987
Q ss_pred cccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT 359 (366)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~ 359 (366)
+..++..+. . .... ... ........+..+++.+.++++++||+|.++++++....
T Consensus 208 ~~~~~~~~~-~-~~~p-~a~-~~~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~i~~~~ 262 (715)
T PRK11730 208 KLDWKARRQ-P-KLEP-LKL-SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAA 262 (715)
T ss_pred CCccccccC-c-cccc-ccc-cchhHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHh
Confidence 544433221 0 0000 000 11233446677777788899999999999999997643
No 30
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-42 Score=327.36 Aligned_cols=206 Identities=35% Similarity=0.630 Sum_probs=182.4
Q ss_pred cceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060 63 KHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 63 ~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
+++.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.| +.||+|+|++++.... ....
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~v~~vV-l~g~g~~~F~aG~Dl~~~~~~~-~~~~ 79 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPR-AANALSLALLEELQNILTQINEEANVRVVI-LTGAGEKAFCAGADLKERAGMN-EEQV 79 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCc-ccCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EecCCCCceEcCcChHhhhcCC-hhhH
Confidence 4678886 7899999999998 789999999999999999999999999755 47777 5999999999885422 2333
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+...++.++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~ 135 (260)
T PRK07657 80 RHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESA------------------------SLGLTET 135 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCC------------------------EEcCchh
Confidence 4445566788999999999999999999999999999999999999876 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|++++|..++++|+++|++++++||+++||||+++|+ +++++.+.+++++++..
T Consensus 136 ~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~ 202 (260)
T PRK07657 136 TLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPA-------------HLLEEKAIEIAEKIASN 202 (260)
T ss_pred ccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-------------HHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987 67999999999999987
Q ss_pred ccc-ccccC
Q psy9060 301 KLK-INRIK 308 (366)
Q Consensus 301 ~~~-~~~~~ 308 (366)
+.. +..+|
T Consensus 203 ~~~a~~~~K 211 (260)
T PRK07657 203 GPIAVRQAK 211 (260)
T ss_pred CHHHHHHHH
Confidence 543 44444
No 31
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-42 Score=327.67 Aligned_cols=209 Identities=27% Similarity=0.488 Sum_probs=183.4
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC-CHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK-TAD 138 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~-~~~ 138 (366)
+.+.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++|| ++|.| ++||+|+|++++.... ...
T Consensus 9 ~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~~FcaG~Dl~~~~~~~~~~~ 86 (269)
T PRK06127 9 PTGKLLAEKTGGLGRITFNNPA-RHNAMSLDMWEALPQALAAAEDDDAIRVVV-LTGAGEKAFVSGADISQFEESRSDAE 86 (269)
T ss_pred CCCceEEEEECCEEEEEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EEeCCCCceecCcCHHHHhhcccchH
Confidence 3456888999999999999998 799999999999999999999999999765 57776 7999999999876421 222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
....+......++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a------------------------~f~~p 142 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDS------------------------RFGIP 142 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCC------------------------EeeCc
Confidence 233344555678889999999999999999999999999999999999976 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|++++|++++|..++++|+++|++++++||+++||||+|+|+ +++.+.+.+++++++
T Consensus 143 e~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~ 209 (269)
T PRK06127 143 AARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAA-------------DDLETALADYAATIA 209 (269)
T ss_pred hhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-------------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 789999999999998
Q ss_pred cCccc-ccccC
Q psy9060 299 SGKLK-INRIK 308 (366)
Q Consensus 299 ~~~~~-~~~~~ 308 (366)
..+.. +..+|
T Consensus 210 ~~~~~a~~~~K 220 (269)
T PRK06127 210 GNAPLTLRAAK 220 (269)
T ss_pred hCCHHHHHHHH
Confidence 77543 44444
No 32
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-42 Score=326.34 Aligned_cols=204 Identities=25% Similarity=0.427 Sum_probs=179.3
Q ss_pred ceeEEEeCC---EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060 64 HFKEKAVGD---VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 64 ~i~~~~~~~---Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
.+.++++++ |++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+|++++...... .
T Consensus 4 ~i~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~--~ 79 (251)
T PRK06023 4 HILVERPGAHPGVQVIRFNRPE-KKNAITRAMYATMAKALKAADADDAIRAHV-FLGTEGCFSAGNDMQDFLAAAMG--G 79 (251)
T ss_pred eEEEEeecCcCcEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCeecCcCHHHHhhcccc--c
Confidence 477787764 9999999999 789999999999999999999999999755 58899999999999987542111 1
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+...+.+++..+.++||||||+|||+|+|||++|+++|||||+++++ +|++||+
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a------------------------~f~~pe~ 135 (251)
T PRK06023 80 TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRS------------------------LFRTPFV 135 (251)
T ss_pred hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCC------------------------EecCccc
Confidence 1223345678889999999999999999999999999999999999887 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|+++++++++|..++++++++|+.++++||+++||||+|+|+ +++.+.+.+++++|+..
T Consensus 136 ~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~ 202 (251)
T PRK06023 136 DLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDE-------------EAVEAETLKAAEELAAK 202 (251)
T ss_pred ccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-------------HHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987 67999999999999988
Q ss_pred ccc-ccccC
Q psy9060 301 KLK-INRIK 308 (366)
Q Consensus 301 ~~~-~~~~~ 308 (366)
+.. +...|
T Consensus 203 ~~~a~~~~K 211 (251)
T PRK06023 203 PPQALQIAR 211 (251)
T ss_pred CHHHHHHHH
Confidence 653 33344
No 33
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.9e-42 Score=330.13 Aligned_cols=207 Identities=26% Similarity=0.483 Sum_probs=178.4
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC------C--
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK------T-- 136 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~------~-- 136 (366)
+.++.+++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++.... +
T Consensus 10 ~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vrvvV-ltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 87 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPS-QRNALSLDFFTEFPKALSSLDQNPNVSVII-LSGAGDHFCSGIDLKTLNSISEQSSSGDRG 87 (275)
T ss_pred EEecCCCCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EECCCCceeeCcChHHhhhcccccccccch
Confidence 444557899999999999 789999999999999999999999999654 588999999999999875421 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060 137 --ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG 214 (366)
Q Consensus 137 --~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
......+...+++++..+.++||||||+|||+|+|||++|+++||+||+++++ +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~ 143 (275)
T PLN02664 88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA------------------------F 143 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCC------------------------E
Confidence 01222333455678889999999999999999999999999999999999987 9
Q ss_pred ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060 215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294 (366)
Q Consensus 215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a 294 (366)
|++||+++|+.|++|++++|++++|..+|++|+++|+.++++||+++||||+|||+. +++.+.+.+++
T Consensus 144 f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~------------~~l~~~~~~~a 211 (275)
T PLN02664 144 FSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSK------------EDLDEGVRLIA 211 (275)
T ss_pred eccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCCh------------hHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999841 56888899999
Q ss_pred HHHhcCccc-ccccCC
Q psy9060 295 SQLASGKLK-INRIKP 309 (366)
Q Consensus 295 ~~la~~~~~-~~~~~~ 309 (366)
++|+..++. +..+|.
T Consensus 212 ~~ia~~~p~a~~~~K~ 227 (275)
T PLN02664 212 EGIAAKSPLAVTGTKA 227 (275)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 999987643 444443
No 34
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-42 Score=326.49 Aligned_cols=208 Identities=26% Similarity=0.391 Sum_probs=182.9
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC---HHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---ADQ 139 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~---~~~ 139 (366)
+++.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++++| ++|.|++||+|+|++++..... ...
T Consensus 2 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 2 EHIIYEVEDDLATLTLNRPE-VSNGFNIPMCQEILEALRLAEEDPSVRFLL-INANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CceEEEEECCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcccccCHHHHHhhccccchhh
Confidence 45788888999999999998 789999999999999999999999999755 5889999999999998864211 122
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
...+.+.+++++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a------------------------~f~~pe 135 (255)
T PRK07260 80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKT------------------------KFIQAF 135 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCC------------------------EEechH
Confidence 22334456778889999999999999999999999999999999999987 899999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+++|++|++|++++|++++|..++++|+++|++++|+||+++||||+++|+ +++.+.+.++++++++
T Consensus 136 ~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~ 202 (255)
T PRK07260 136 VGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAES-------------EKLEKTCEQLLKKLRR 202 (255)
T ss_pred hhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCH-------------hHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999987 6789999999999998
Q ss_pred Ccc-cccccCC
Q psy9060 300 GKL-KINRIKP 309 (366)
Q Consensus 300 ~~~-~~~~~~~ 309 (366)
.+. .+...|.
T Consensus 203 ~~~~a~~~~K~ 213 (255)
T PRK07260 203 GSSNSYAAIKS 213 (255)
T ss_pred CCHHHHHHHHH
Confidence 754 3444453
No 35
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-42 Score=327.17 Aligned_cols=199 Identities=30% Similarity=0.502 Sum_probs=180.3
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
..+.++++++|++|+||||+ +.|++|.+++++|.++++.++.|++++++| ++|.|+.||+|+|++++....... ..
T Consensus 5 ~~i~~~~~~~v~~i~lnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~--~~ 80 (259)
T PRK06688 5 TDLLVELEDGVLTITINRPD-KKNALTAAMYQALADALEAAATDPAVRVVV-LTGAGRAFSAGGDIKDFPKAPPKP--PD 80 (259)
T ss_pred CceEEEEECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCccCccCHHHHhccCcch--HH
Confidence 45788899999999999998 789999999999999999999999999755 578889999999999886532221 33
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
+...+++++..+.++|||+||+|||+|+|||++|+++|||||+++++ +|++||+++
T Consensus 81 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe~~~ 136 (259)
T PRK06688 81 ELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESA------------------------KFSLPFAKL 136 (259)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCC------------------------EecCchhhc
Confidence 45566788999999999999999999999999999999999999876 999999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|+++++++++|..+|++|+++|++++++||+++||||+++|+ +++.+.+.+++++++..+.
T Consensus 137 G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~a~~~a~~i~~~~~ 203 (259)
T PRK06688 137 GLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPA-------------AELDAEADAQAAKLAAGPA 203 (259)
T ss_pred CCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999987 6788999999999988754
No 36
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-42 Score=328.45 Aligned_cols=208 Identities=25% Similarity=0.410 Sum_probs=177.1
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK 141 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~ 141 (366)
++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++|| ++|.|+.||+|+|++++..........
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPE-ARNALSTEMLRIMVDAWDRVDNDPDIRSCI-LTGAGGAFCAGMDLKAATKKPPGDSFK 81 (263)
T ss_pred CceEEEEEECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCccccccCHHHHhhccccchhh
Confidence 356888899999999999998 789999999999999999999999999755 588889999999999886432111111
Q ss_pred -H-H-HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 142 -Q-I-SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 142 -~-~-~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
. + ...+.. +.++..+||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p 136 (263)
T PRK07799 82 DGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESA------------------------KFGIS 136 (263)
T ss_pred hhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCC------------------------EecCc
Confidence 0 1 111222 345789999999999999999999999999999999876 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+ +++.+.+.+++++++
T Consensus 137 e~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~~~ 203 (263)
T PRK07799 137 EAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPD-------------GQALDKALELAELIN 203 (263)
T ss_pred ccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCc-------------chHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 567888999999998
Q ss_pred cCccc-ccccCC
Q psy9060 299 SGKLK-INRIKP 309 (366)
Q Consensus 299 ~~~~~-~~~~~~ 309 (366)
..+.. +..+|.
T Consensus 204 ~~~~~a~~~~K~ 215 (263)
T PRK07799 204 ANGPLAVQAILR 215 (263)
T ss_pred hcChHHHHHHHH
Confidence 87643 444443
No 37
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.1e-42 Score=329.46 Aligned_cols=208 Identities=20% Similarity=0.351 Sum_probs=179.9
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC--CH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK--TA 137 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~--~~ 137 (366)
+++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.| +.||+|+||+++.... ..
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~~~~~~ 88 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPE-VRNAFRPKTVKEMIDAFADARDDDNIGVII-LTGAGDKAFCSGGDQKVRGYGGYVDD 88 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EEeCCCCceEeCcChhhhhcccccch
Confidence 3567888889999999999999 789999999999999999999999999755 57877 5999999999874321 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060 138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL 217 (366)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
.....+ ....++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++
T Consensus 89 ~~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~ 142 (273)
T PRK07396 89 DGVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNA------------------------IFGQ 142 (273)
T ss_pred hhhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCc------------------------EEec
Confidence 111111 23457778999999999999999999999999999999999987 9999
Q ss_pred cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060 218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL 297 (366)
Q Consensus 218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l 297 (366)
||+++|++|++|++.+|++++|..+|++|+++|+.++|+||+++||||+|+|+ +++.+.+.+++++|
T Consensus 143 pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l 209 (273)
T PRK07396 143 TGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPL-------------ADLEKETVRWCREM 209 (273)
T ss_pred ccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 78999999999999
Q ss_pred hcCccc-ccccCC
Q psy9060 298 ASGKLK-INRIKP 309 (366)
Q Consensus 298 a~~~~~-~~~~~~ 309 (366)
+..+.. +..+|.
T Consensus 210 a~~~~~a~~~~K~ 222 (273)
T PRK07396 210 LQNSPMALRCLKA 222 (273)
T ss_pred HhCCHHHHHHHHH
Confidence 987643 444443
No 38
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-42 Score=326.88 Aligned_cols=206 Identities=30% Similarity=0.499 Sum_probs=181.9
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHHHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TADQVK 141 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~~~~ 141 (366)
.+.++++++|++|+||||+ +.|++|.+|+++|.++++.+++|++||++| ++|.|+.||+|+||+++.... ......
T Consensus 4 ~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (260)
T PRK07511 4 ELLSRREGSTLVLTLSNPG-ARNALHPDMYAAGIEALNTAERDPSIRAVV-LTGAGGFFCAGGNLNRLLENRAKPPSVQA 81 (260)
T ss_pred eeEEEeECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHhccCCCeEEEE-EECCCCCcccCcCHHHHhhcccccchhHH
Confidence 4678889999999999998 789999999999999999999999999755 578899999999999875421 122333
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221 (366)
Q Consensus 142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~ 221 (366)
.+...+++++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||++
T Consensus 82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~~ 137 (260)
T PRK07511 82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDA------------------------KFVMAYVK 137 (260)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCC------------------------EEeccccc
Confidence 445566788999999999999999999999999999999999999987 99999999
Q ss_pred ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301 (366)
Q Consensus 222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~ 301 (366)
+|++|++|++++|++++|..++++|+++|++++++||+++||||+|+|+ +++.+.+.+++++++..+
T Consensus 138 ~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a~~l~~~~ 204 (260)
T PRK07511 138 VGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEP-------------GQALAEALALADQLAAGS 204 (260)
T ss_pred cCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCc-------------hHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999987 578888999999998875
Q ss_pred c-cccccC
Q psy9060 302 L-KINRIK 308 (366)
Q Consensus 302 ~-~~~~~~ 308 (366)
. .+...|
T Consensus 205 ~~~~~~~K 212 (260)
T PRK07511 205 PNALARIK 212 (260)
T ss_pred HHHHHHHH
Confidence 4 333344
No 39
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.8e-42 Score=326.09 Aligned_cols=200 Identities=33% Similarity=0.553 Sum_probs=177.3
Q ss_pred eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC-CCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISMLAACKTADQVKQISKSGQ 148 (366)
Q Consensus 70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 148 (366)
+++|++||||||+ +.|++|.+|+++|.++++.++.|+++++||| +|. +++||+|+|++++.... ......+...++
T Consensus 2 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl-~g~~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~ 78 (251)
T PLN02600 2 DSGIVELRLDRPE-AKNAIGKEMLRGLRSAFEKIQADASARVVML-RSSVPGVFCAGADLKERRKMS-PSEVQKFVNSLR 78 (251)
T ss_pred CCcEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEEE-ecCCCCceeeCcCHHHHhccC-hHHHHHHHHHHH
Confidence 4789999999999 7899999999999999999999999997665 665 68999999999875432 233334555567
Q ss_pred HHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060 149 QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA 228 (366)
Q Consensus 149 ~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~ 228 (366)
.++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|++|++
T Consensus 79 ~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~~~Gl~p~~ 134 (251)
T PLN02600 79 STFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA------------------------VFGLPETGLAIIPGA 134 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCC------------------------EEeCcccccCcCCCc
Confidence 78889999999999999999999999999999999999986 999999999999999
Q ss_pred hHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-cccc
Q psy9060 229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRI 307 (366)
Q Consensus 229 gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~~~~ 307 (366)
|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++|+..+.. +...
T Consensus 135 g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a~~la~~~p~a~~~~ 201 (251)
T PLN02600 135 GGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPA-------------GEAYEKALELAQEINQKGPLAIKMA 201 (251)
T ss_pred hHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeCh-------------hHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999999999999999999987 67889999999999988654 4444
Q ss_pred CC
Q psy9060 308 KP 309 (366)
Q Consensus 308 ~~ 309 (366)
|.
T Consensus 202 K~ 203 (251)
T PLN02600 202 KK 203 (251)
T ss_pred HH
Confidence 43
No 40
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.2e-42 Score=319.82 Aligned_cols=192 Identities=26% Similarity=0.477 Sum_probs=172.9
Q ss_pred eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHH
Q psy9060 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQ 149 (366)
Q Consensus 70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 149 (366)
+++|++|+||||+ + |++|.+|+.+|.+++++++.|++++++| ++|.|+.||+|+|++++..... .......+.+++
T Consensus 15 ~~~i~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~~~~~~ 90 (222)
T PRK05869 15 DAGLATLLLSRPP-T-NALTRQVYREIVAAANELGRRDDVAAVI-LYGGHEIFSAGDDMPELRTLSA-QEADTAARVRQQ 90 (222)
T ss_pred cCCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcCcCcCHHHHhccCh-hhHHHHHHHHHH
Confidence 4899999999997 4 9999999999999999999999999755 5888999999999998764322 222233445678
Q ss_pred HHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh
Q psy9060 150 ILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG 229 (366)
Q Consensus 150 ~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g 229 (366)
++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|++|++|
T Consensus 91 ~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~Gl~p~~g 146 (222)
T PRK05869 91 AVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNV------------------------KFGATEILAGLAPSGD 146 (222)
T ss_pred HHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCC------------------------EEcCchhccCCCCCcc
Confidence 8999999999999999999999999999999999999876 9999999999999999
Q ss_pred HHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 230 g~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
++.+|++++|..++++++++|+.++++||+++||||+++|+ +++.+.+.+++++|++.+.
T Consensus 147 ~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ia~~~~ 206 (222)
T PRK05869 147 GMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAP-------------DDVYDAAAAWARRFLDGPP 206 (222)
T ss_pred HHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCc-------------hHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999987 6788999999999988754
No 41
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-42 Score=329.25 Aligned_cols=208 Identities=24% Similarity=0.373 Sum_probs=180.0
Q ss_pred CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-----
Q psy9060 62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK----- 135 (366)
Q Consensus 62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~----- 135 (366)
++.+.++. +++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++....
T Consensus 8 ~~~v~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~vrvvV-l~g~g~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 8 MSLVLVDHPRPEIALITLNRPE-RMNSMAFDVMVPLKEALAEVSYDNSVRVVV-LTGAGRGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCceEEeeecCCEEEEEecCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCeecCcchhhhhcccccccc
Confidence 45677876 7899999999998 789999999999999999999999999755 588899999999999874311
Q ss_pred -CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060 136 -TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG 214 (366)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
...........+++++..+.++||||||+|||+|+|||++|+++||+||+++++ +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a------------------------~ 141 (276)
T PRK05864 86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSA------------------------Y 141 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCC------------------------E
Confidence 111111223445677888999999999999999999999999999999999986 9
Q ss_pred ccccchhccCCC-ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHH
Q psy9060 215 LGLPEVMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 293 (366)
Q Consensus 215 ~~~pe~~~Gl~p-~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~ 293 (366)
|++||+++|++| ++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+ +++.+.+.++
T Consensus 142 f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~ 208 (276)
T PRK05864 142 FRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-------------EQLLDTCYAI 208 (276)
T ss_pred ecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCH-------------HHHHHHHHHH
Confidence 999999999997 78899999999999999999999999999999999999999987 7889999999
Q ss_pred HHHHhcCccc-ccccC
Q psy9060 294 ASQLASGKLK-INRIK 308 (366)
Q Consensus 294 a~~la~~~~~-~~~~~ 308 (366)
+++|+..++. +..+|
T Consensus 209 a~~la~~~p~a~~~~K 224 (276)
T PRK05864 209 AARMAGFSRPGIELTK 224 (276)
T ss_pred HHHHHhCCHHHHHHHH
Confidence 9999987643 43344
No 42
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-42 Score=328.54 Aligned_cols=208 Identities=24% Similarity=0.441 Sum_probs=182.3
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---CCHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC---KTADQ 139 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~---~~~~~ 139 (366)
+.+.++++++|++|+||||+ +.|+++.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++++... .+...
T Consensus 17 ~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vV-ltg~g~~FsaG~Dl~~~~~~~~~~~~~~ 94 (277)
T PRK08258 17 RHFLWEVDDGVATITLNRPE-RKNPLTFESYAELRDLFRELVYADDVKAVV-LTGAGGNFCSGGDVHEIIGPLTKMDMPE 94 (277)
T ss_pred cceEEEEECCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EeCCCCCcccccCHHHHhccccccChhH
Confidence 47888999999999999998 789999999999999999999999999755 58889999999999987431 12222
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
...+.+..++++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a------------------------~f~~pe 150 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSA------------------------KTAFLF 150 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCC------------------------EEeccc
Confidence 33344555678899999999999999999999999999999999999987 999999
Q ss_pred hhccCCC-ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 220 VMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 220 ~~~Gl~p-~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
+++|++| ++|++++|++++|..+|++|+++|++++++||+++||||+|+|+ +++.+.+.+++++|+
T Consensus 151 ~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la 217 (277)
T PRK08258 151 TRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-------------EELLAEAQALARRLA 217 (277)
T ss_pred cccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCH-------------HHHHHHHHHHHHHHH
Confidence 9999995 78899999999999999999999999999999999999999987 678999999999998
Q ss_pred cCccc-ccccCC
Q psy9060 299 SGKLK-INRIKP 309 (366)
Q Consensus 299 ~~~~~-~~~~~~ 309 (366)
..+.. +..+|.
T Consensus 218 ~~~~~a~~~~K~ 229 (277)
T PRK08258 218 AGPTFAHGMTKT 229 (277)
T ss_pred hCCHHHHHHHHH
Confidence 87643 444443
No 43
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-42 Score=332.20 Aligned_cols=209 Identities=23% Similarity=0.397 Sum_probs=181.2
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---C---
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC---K--- 135 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~---~--- 135 (366)
++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.+..|+++++|| ++|.|+.||+|+|++++... .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPD-KLNAFTVTMARELIEAFDAADADDAVRAVI-VTGAGRAFCAGADLSAGGNTFDLDAPR 80 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCc-ccCCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCCeecCcChHHhhhcccccccc
Confidence 456888889999999999998 789999999999999999999999999755 58889999999999987421 0
Q ss_pred ----------CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhh
Q psy9060 136 ----------TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYR 205 (366)
Q Consensus 136 ----------~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~ 205 (366)
.......+....+.++..+..+||||||+|||+|+|||++|+++||+||+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a---------------- 144 (296)
T PRK08260 81 TPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAA---------------- 144 (296)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCC----------------
Confidence 000112233344567889999999999999999999999999999999999987
Q ss_pred hhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHH
Q psy9060 206 IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEY 285 (366)
Q Consensus 206 ~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~ 285 (366)
+|++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+ ++
T Consensus 145 --------~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-------------~~ 203 (296)
T PRK08260 145 --------RFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP-------------DE 203 (296)
T ss_pred --------EEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCH-------------HH
Confidence 999999999999999999999999999999999999999999999999999999987 67
Q ss_pred HHHHHHHHHHHHhcC-c-ccccccCC
Q psy9060 286 LEEVAVNTASQLASG-K-LKINRIKP 309 (366)
Q Consensus 286 l~~~a~~~a~~la~~-~-~~~~~~~~ 309 (366)
+.+.+.+++++|+.. + ..+..+|.
T Consensus 204 l~~~a~~~a~~i~~~~~~~a~~~~K~ 229 (296)
T PRK08260 204 LLPAARALAREIADNTSPVSVALTRQ 229 (296)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 889999999999874 3 34544553
No 44
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-42 Score=326.76 Aligned_cols=209 Identities=24% Similarity=0.400 Sum_probs=182.6
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCC-CccEEEEEeeCCCcEEcCCCcchhhhcCCH--
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS-SIRSAVIISGKPGCFIAGADISMLAACKTA-- 137 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~-~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~-- 137 (366)
+++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+ ++++|| ++|.|+.||+|+|++++......
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvv-l~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPE-VMNAVSIDMLGGLAEALDAIEDGKAEVRCLV-LTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CcceEEEEeECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCCcccccCHHhhhccccccc
Confidence 4567888999999999999998 789999999999999999999876 499655 58888999999999987542110
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060 138 ---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG 214 (366)
Q Consensus 138 ---~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
.....+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~ 135 (266)
T PRK05981 80 SGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSA------------------------Y 135 (266)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCC------------------------E
Confidence 1122334456778899999999999999999999999999999999999987 8
Q ss_pred ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060 215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294 (366)
Q Consensus 215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a 294 (366)
|++||+++|++|++|++++|++++|..++++|+++|+.++++||+++||||+++|+ +++.+.+.+++
T Consensus 136 f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a 202 (266)
T PRK05981 136 FLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDD-------------AELMAEAMKLA 202 (266)
T ss_pred EechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-------------hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 67889999999
Q ss_pred HHHhcCcc-cccccC
Q psy9060 295 SQLASGKL-KINRIK 308 (366)
Q Consensus 295 ~~la~~~~-~~~~~~ 308 (366)
++++..+. .+..+|
T Consensus 203 ~~l~~~~~~a~~~~K 217 (266)
T PRK05981 203 HELANGPTVALGLIR 217 (266)
T ss_pred HHHHcCCHHHHHHHH
Confidence 99988765 344444
No 45
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-42 Score=325.08 Aligned_cols=206 Identities=28% Similarity=0.423 Sum_probs=176.4
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQ 139 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~ 139 (366)
+++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.| +.||+|+||+++........
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~~F~aG~Dl~~~~~~~~~~~ 79 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPE-VMNALHLDAHFELEEVFDDFAADPEQWVAI-VTGAGDKAFSAGNDLKEQAAGGKRGW 79 (259)
T ss_pred CCceeEEEeECCEEEEEEcCcc-ccCCCCHHHHHHHHHHHHHHhhCCCcEEEE-EEcCCCCceeccccHHhHhhcCcchh
Confidence 3456888889999999999998 789999999999999999999999999755 57777 69999999998754221111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
. ...+..+ ..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 80 ~---~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe 131 (259)
T PRK06494 80 P---ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENA------------------------TFALPE 131 (259)
T ss_pred h---hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCC------------------------EEeCcc
Confidence 1 1122233 34468999999999999999999999999999999887 999999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+++|+ +++++.+.+++++++.
T Consensus 132 ~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~ 198 (259)
T PRK06494 132 PRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPA-------------GELLAAAERWADDILA 198 (259)
T ss_pred cccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-------------hHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987 6789999999999998
Q ss_pred Cccc-ccccCC
Q psy9060 300 GKLK-INRIKP 309 (366)
Q Consensus 300 ~~~~-~~~~~~ 309 (366)
.+.. +..+|.
T Consensus 199 ~~~~a~~~~K~ 209 (259)
T PRK06494 199 CSPLSIRASKQ 209 (259)
T ss_pred cCHHHHHHHHH
Confidence 7643 444443
No 46
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=3.4e-42 Score=325.99 Aligned_cols=207 Identities=24% Similarity=0.393 Sum_probs=180.3
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC--CCcEEcCCCcchhhhcCCHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK--PGCFIAGADISMLAACKTAD 138 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~--g~~F~aG~Dl~~~~~~~~~~ 138 (366)
+++.+.++.+++|++||||||+ +.|++|.+|+++|.++++.++.|+ ++++|| +|. +++||+|+||+++......
T Consensus 2 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~-v~~vvl-tg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 2 SMQYVNVVTINKIATITFNNPA-KRNALSKVLIDDLMQALSDLNRPE-IRVVIL-RAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CccceEEEeECCEEEEEEcCcc-ccCCCCHHHHHHHHHHHHHHhcCC-ceEEEE-ECCCCCCeeECCcCHHHHhhcccc-
Confidence 3567888999999999999998 789999999999999999999887 997665 653 4799999999987532211
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
...+...+..++..+..+||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~p 132 (261)
T PRK11423 78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS------------------------TFAMT 132 (261)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCC------------------------EecCc
Confidence 12233455678899999999999999999999999999999999999876 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|+++++++++|..++++|+++|++++|+||+++||||+|+|+ +++++.+.+++++++
T Consensus 133 e~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l~ 199 (261)
T PRK11423 133 PANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEV-------------EELEDFTLQMAHHIS 199 (261)
T ss_pred hhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-------------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 679999999999998
Q ss_pred cCcc-cccccCC
Q psy9060 299 SGKL-KINRIKP 309 (366)
Q Consensus 299 ~~~~-~~~~~~~ 309 (366)
..+. .+..+|.
T Consensus 200 ~~~~~a~~~~K~ 211 (261)
T PRK11423 200 EKAPLAIAVIKE 211 (261)
T ss_pred hcCHHHHHHHHH
Confidence 8754 3444443
No 47
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-42 Score=325.73 Aligned_cols=205 Identities=26% Similarity=0.415 Sum_probs=181.6
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
+++.++.+++|++|+||||+ +.|++|.+|+.+|.++++.+ .|+++++ ||++|.|+.||+|+|++++...........
T Consensus 6 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~-~d~~vrv-vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPE-ALNALDEPMLKELLQALKEV-AESSAHI-VVLRGNGRGFSAGGDIKMMLSSNDESKFDG 82 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHh-cCCCeeE-EEEECCCCCcccccCHHHHhhccCchhHHH
Confidence 46888999999999999998 78999999999999999999 5889996 456889999999999998864322233344
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
+...+++++..+..+||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 83 ~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~ 138 (260)
T PRK07659 83 VMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISA------------------------KLAMNFIGI 138 (260)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCC------------------------EEcCchhhc
Confidence 55667788899999999999999999999999999999999999987 999999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+++ + +++.+.+.+++++++..+.
T Consensus 139 Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-------------~~~~~~a~~~a~~l~~~~~ 204 (260)
T PRK07659 139 GLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-G-------------GDFQTAAKQKISEWLQKPL 204 (260)
T ss_pred CCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-h-------------hHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999 6 5688899999999988765
Q ss_pred c-ccccC
Q psy9060 303 K-INRIK 308 (366)
Q Consensus 303 ~-~~~~~ 308 (366)
. +..+|
T Consensus 205 ~a~~~~K 211 (260)
T PRK07659 205 KAMIETK 211 (260)
T ss_pred HHHHHHH
Confidence 3 34444
No 48
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.6e-42 Score=327.48 Aligned_cols=207 Identities=20% Similarity=0.295 Sum_probs=178.8
Q ss_pred CcceeEEEe-CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC--HH
Q psy9060 62 TKHFKEKAV-GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT--AD 138 (366)
Q Consensus 62 ~~~i~~~~~-~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~--~~ 138 (366)
++++.++++ ++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|+.||+|+|++++..... ..
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~-~~Nal~~~~~~el~~al~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~ 81 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRAD-KNNAFNAQMIRELILALDQVQSDASLRFLL-LRGRGRHFSAGADLAWMQQSADLDYN 81 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCCcccCcCHHHHhhcccccch
Confidence 667888885 789999999999 789999999999999999999999999755 5899999999999998753211 01
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
........+.+++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a------------------------~f~~p 137 (265)
T PRK05674 82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDA------------------------QFCLS 137 (265)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCC------------------------EEeCc
Confidence 111122345678889999999999999999999999999999999999987 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|++ ++++++|..++++|+++|+.++|+||+++||||+|+|+ +++.+.+.+++++++
T Consensus 138 e~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la 203 (265)
T PRK05674 138 EVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPA-------------AELEAQVEAWIANLL 203 (265)
T ss_pred ccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence 9999999987665 58999999999999999999999999999999999987 679999999999999
Q ss_pred cCccc-ccccC
Q psy9060 299 SGKLK-INRIK 308 (366)
Q Consensus 299 ~~~~~-~~~~~ 308 (366)
..++. +..+|
T Consensus 204 ~~~p~a~~~~K 214 (265)
T PRK05674 204 LNSPQALRASK 214 (265)
T ss_pred hcCHHHHHHHH
Confidence 87653 44444
No 49
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-42 Score=323.19 Aligned_cols=202 Identities=29% Similarity=0.530 Sum_probs=174.0
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
+.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++|| ++|.|+.||+|+|++++........
T Consensus 3 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~~--- 77 (254)
T PRK08252 3 DEVLVERRGRVLIITINRPE-ARNAVNAAVAQGLAAALDELDADPDLSVGI-LTGAGGTFCAGMDLKAFARGERPSI--- 77 (254)
T ss_pred ceEEEEEECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCceEcCcCHHHHhcccchhh---
Confidence 35788889999999999998 789999999999999999999999999755 5888999999999998864221111
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
....+..++ ...+||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 78 ~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~ 131 (254)
T PRK08252 78 PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDA------------------------KFGLPEVKR 131 (254)
T ss_pred hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCC------------------------EEeCchhhc
Confidence 111122222 147999999999999999999999999999999987 999999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..+|++|+++|++++++||+++||||+|+|+ +++.+.+.+++++++..++
T Consensus 132 Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~~ 198 (254)
T PRK08252 132 GLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEP-------------GQALDAALELAERIAANGP 198 (254)
T ss_pred CCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCc-------------chHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999987 6788899999999998765
Q ss_pred c-ccccC
Q psy9060 303 K-INRIK 308 (366)
Q Consensus 303 ~-~~~~~ 308 (366)
. +..+|
T Consensus 199 ~a~~~~K 205 (254)
T PRK08252 199 LAVAASK 205 (254)
T ss_pred HHHHHHH
Confidence 3 33344
No 50
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.6e-42 Score=324.85 Aligned_cols=203 Identities=37% Similarity=0.661 Sum_probs=185.9
Q ss_pred eEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060 66 KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK 145 (366)
Q Consensus 66 ~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 145 (366)
+|+.+++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.++.||+|.|++++... +......+.+
T Consensus 1 ~~~~~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~ 77 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPE-KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-DEEEAREFFR 77 (245)
T ss_dssp EEEEETTEEEEEEECGG-GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-ccccccccch
Confidence 47889999999999998 799999999999999999999999999 56678999999999999998875 4456677788
Q ss_pred HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCC
Q psy9060 146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL 225 (366)
Q Consensus 146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~ 225 (366)
.++.++..+.++||||||+|||+|+|||++++++||+||+++++ +|++||+++|++
T Consensus 78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~~~G~~ 133 (245)
T PF00378_consen 78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDA------------------------KFGFPEVRLGIF 133 (245)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTT------------------------EEETGGGGGTSS
T ss_pred hhccccccchhhhhheeecccccccccccccccccceEEeeccc------------------------ceeeeecccCcc
Confidence 89999999999999999999999999999999999999999987 899999999999
Q ss_pred CChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-c
Q psy9060 226 PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-I 304 (366)
Q Consensus 226 p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~ 304 (366)
|++|++.+|+|++|..++++++++|++++|+||+++||||+|+|+ +++.+.+.+++++++..+.. +
T Consensus 134 p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~a~~~a~~l~~~~~~a~ 200 (245)
T PF00378_consen 134 PGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPD-------------EELDEEALELAKRLAAKPPSAL 200 (245)
T ss_dssp STSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESG-------------GGHHHHHHHHHHHHHTSCHHHH
T ss_pred cccccccccceeeecccccccccccccchhHHHHhhcceeEEcCc-------------hhhhHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999999999997 56999999999999988543 3
Q ss_pred cccC
Q psy9060 305 NRIK 308 (366)
Q Consensus 305 ~~~~ 308 (366)
...|
T Consensus 201 ~~~K 204 (245)
T PF00378_consen 201 RATK 204 (245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3344
No 51
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-42 Score=327.59 Aligned_cols=209 Identities=29% Similarity=0.449 Sum_probs=180.2
Q ss_pred CCcceeEEEeC-CEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060 61 STKHFKEKAVG-DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ 139 (366)
Q Consensus 61 ~~~~i~~~~~~-~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~ 139 (366)
.++.+.+++++ +|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++........
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPD-RLNAWTPVMEAEVYAAMDRAEADPAVRVIV-LTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHhccCCCeeEEE-EECCCCCcccccCHHHHhccCcccc
Confidence 45678889888 99999999998 789999999999999999999999999755 5788999999999998754211100
Q ss_pred -----HHHH----HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccc
Q psy9060 140 -----VKQI----SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKD 210 (366)
Q Consensus 140 -----~~~~----~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~ 210 (366)
...+ ...+++++..+.++||||||+|||+|+|||++|+++||+||+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a--------------------- 139 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGA--------------------- 139 (272)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCC---------------------
Confidence 0011 1123556788999999999999999999999999999999999987
Q ss_pred ccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHH
Q psy9060 211 KKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA 290 (366)
Q Consensus 211 ~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a 290 (366)
+|++||+++|++|++|++++|++++|..++++|+++|+.++|+||+++||||+|+|+ +++.+.+
T Consensus 140 ---~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a 203 (272)
T PRK06210 140 ---KFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPP-------------DELMERT 203 (272)
T ss_pred ---EEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-------------HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 6788999
Q ss_pred HHHHHHHhcC--cccccccC
Q psy9060 291 VNTASQLASG--KLKINRIK 308 (366)
Q Consensus 291 ~~~a~~la~~--~~~~~~~~ 308 (366)
.+++++++.. |..+...|
T Consensus 204 ~~~a~~i~~~~~p~a~~~~K 223 (272)
T PRK06210 204 LAYAEDLARNVSPASMAVIK 223 (272)
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 9999999863 44454455
No 52
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-42 Score=323.39 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=174.7
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
+.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|++||+|+|++++..... .....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-ltg~g~~FcaG~Dl~~~~~~~~-~~~~~ 79 (254)
T PRK08259 3 MSVRVERNGPVTTVILNRPE-VRNAVDGPTAAALADAFRAFDADDAASVAV-LWGAGGTFCAGADLKAVGTGRG-NRLHP 79 (254)
T ss_pred ceEEEEEECCEEEEEecCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCccCCcChHHHhcccc-hhhhh
Confidence 34788889999999999998 789999999999999999999999999755 5888999999999998754221 11111
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
.....+...+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 80 --~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~ 133 (254)
T PRK08259 80 --SGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDA------------------------VFGVFCRRW 133 (254)
T ss_pred --hhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCC------------------------EecCccccc
Confidence 001112223347999999999999999999999999999999987 999999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++|++.+.
T Consensus 134 Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~ 200 (254)
T PRK08259 134 GVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPK-------------GQARAAAEELAAELAAFPQ 200 (254)
T ss_pred CCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeCh-------------hHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999997 6789999999999998865
Q ss_pred c-ccccC
Q psy9060 303 K-INRIK 308 (366)
Q Consensus 303 ~-~~~~~ 308 (366)
. +..+|
T Consensus 201 ~a~~~~K 207 (254)
T PRK08259 201 TCLRADR 207 (254)
T ss_pred HHHHHHH
Confidence 4 33344
No 53
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-41 Score=322.91 Aligned_cols=207 Identities=23% Similarity=0.412 Sum_probs=177.1
Q ss_pred CcceeEEEe-CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHH
Q psy9060 62 TKHFKEKAV-GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TAD 138 (366)
Q Consensus 62 ~~~i~~~~~-~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~ 138 (366)
++.+.++++ ++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+||+++.... ...
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPE-KHNALSARMIAELTTAARRLAADAAVRVVV-LTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcc-cccCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCcccCCcCHHHHHhhcccchh
Confidence 445778875 689999999998 799999999999999999999999999755 588899999999999875311 111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
........+..++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a------------------------~f~~p 136 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGA------------------------RFGLT 136 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCC------------------------EEeCc
Confidence 111223445678889999999999999999999999999999999999987 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|+++++ +++|..++++|+++|++++++||+++||||+|+|+ +++.+.+.+++++++
T Consensus 137 e~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~~~~~a~~l~ 202 (262)
T PRK07468 137 ETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPA-------------ERLDAAVEAEVTPYL 202 (262)
T ss_pred hhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence 9999999999998855 45999999999999999999999999999999987 678889999999998
Q ss_pred cCcc-cccccC
Q psy9060 299 SGKL-KINRIK 308 (366)
Q Consensus 299 ~~~~-~~~~~~ 308 (366)
..+. .+..+|
T Consensus 203 ~~~~~a~~~~K 213 (262)
T PRK07468 203 SCAPGAVAAAK 213 (262)
T ss_pred hcCHHHHHHHH
Confidence 8754 344444
No 54
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-42 Score=323.43 Aligned_cols=205 Identities=23% Similarity=0.318 Sum_probs=178.7
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
+.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++++++| ++|.|+.||+|+|++++....... ...
T Consensus 3 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~-~~~ 79 (249)
T PRK05870 3 DPVLLDVDDGVALITVNDPD-RRNAVTAEMSAQLRAAVAAAEADPDVHALV-VTGAGKAFCAGADLTALGAAPGRP-AED 79 (249)
T ss_pred ccEEEEccCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCCeecCcChHHHhcccccc-hHH
Confidence 34778888999999999998 789999999999999999999999999755 588999999999999986532211 122
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
......+.+..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 80 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe~~~ 135 (249)
T PRK05870 80 GLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKA------------------------LFDARFQKL 135 (249)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCC------------------------EEeCccccc
Confidence 33445567788999999999999999999999999999999999987 899999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..++++|+++|+.++++||+++||||+++ + ++.+.+.+++++++..++
T Consensus 136 G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~--------------~l~~~a~~~a~~la~~~~ 200 (249)
T PRK05870 136 GLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA-D--------------DPVAAALELAAGPAAAPR 200 (249)
T ss_pred CcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH-h--------------hHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999 4 477889999999998864
Q ss_pred c-ccccCC
Q psy9060 303 K-INRIKP 309 (366)
Q Consensus 303 ~-~~~~~~ 309 (366)
. +..+|.
T Consensus 201 ~a~~~~K~ 208 (249)
T PRK05870 201 ELVLATKA 208 (249)
T ss_pred HHHHHHHH
Confidence 3 444453
No 55
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=8.1e-42 Score=324.05 Aligned_cols=206 Identities=23% Similarity=0.420 Sum_probs=178.8
Q ss_pred CCcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060 61 STKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ 139 (366)
Q Consensus 61 ~~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~ 139 (366)
+.+.+.++. +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++...... .
T Consensus 7 ~~~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~-~ 83 (265)
T PLN02888 7 SENLILVPKSRNGIATITINRPK-ALNALTRPMMVELAAAFKRLDEDDSVKVII-LTGSGRAFCSGVDLTAAEEVFKG-D 83 (265)
T ss_pred CCCeEEEEeccCCEEEEEEcCCC-cccCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCcccCCCCHHHHHhhccc-h
Confidence 345677775 6899999999998 789999999999999999999999999755 57888999999999987532111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
. .....+++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 84 ~---~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe 136 (265)
T PLN02888 84 V---KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGA------------------------KFIDTH 136 (265)
T ss_pred h---hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCC------------------------EecCcc
Confidence 1 1123456778899999999999999999999999999999999987 899999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+++|++|++|++++|++++|..+|++|+++|+.++++||+++||||+|||+ +++.+.+.+++++++.
T Consensus 137 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~ 203 (265)
T PLN02888 137 AKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEE-------------SELLKKAREVAEAIIK 203 (265)
T ss_pred ccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeCh-------------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987 6788999999999998
Q ss_pred Ccc-cccccCC
Q psy9060 300 GKL-KINRIKP 309 (366)
Q Consensus 300 ~~~-~~~~~~~ 309 (366)
.+. .+..+|.
T Consensus 204 ~~~~a~~~~K~ 214 (265)
T PLN02888 204 NNQGMVLRYKS 214 (265)
T ss_pred CCHHHHHHHHH
Confidence 754 3444553
No 56
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2e-41 Score=318.65 Aligned_cols=205 Identities=21% Similarity=0.311 Sum_probs=181.1
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV 140 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~ 140 (366)
.++.+.++++++|++|+||||+ +.|++|.+++++|.++++++..|+++|++| ++|.|+.||+|+|++++.......
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRV-NKNAFSDELCDQLHEAFDTIAQDPRYKVVI-LTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCeeCCcChHHHhhccchh--
Confidence 3556788889999999999998 789999999999999999999999999755 588999999999999875432211
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+. . ++++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 79 ~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~ 132 (249)
T PRK07110 79 GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRES------------------------VYTANFM 132 (249)
T ss_pred hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCC------------------------EecCchh
Confidence 1121 1 578889999999999999999999999999999999999987 8999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|++++|++++|..+|++|+++|++++++||+++||||+|+++ +++.+.+.++++++++.
T Consensus 133 ~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~ 199 (249)
T PRK07110 133 KYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPR-------------AEVLEKALELARSLAEK 199 (249)
T ss_pred ccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh-------------HHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987 67899999999999987
Q ss_pred ccc-ccccC
Q psy9060 301 KLK-INRIK 308 (366)
Q Consensus 301 ~~~-~~~~~ 308 (366)
+.. +...|
T Consensus 200 ~~~a~~~~K 208 (249)
T PRK07110 200 PRHSLVLLK 208 (249)
T ss_pred CHHHHHHHH
Confidence 653 44444
No 57
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.9e-41 Score=320.85 Aligned_cols=203 Identities=31% Similarity=0.519 Sum_probs=176.5
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVKQ 142 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 142 (366)
.+.++++++|++|+||||+ .|++|.+|+++|.++++.++.|++|++|| ++|.| +.||+|+|++++........ .
T Consensus 4 ~i~~~~~~~v~~itlnrp~--~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~~F~aG~Dl~~~~~~~~~~~--~ 78 (261)
T PRK03580 4 SLHTTRNGSILEITLDRPK--ANAIDAKTSFAMGEVFLNFRDDPELRVAI-ITGAGEKFFSAGWDLKAAAEGEAPDA--D 78 (261)
T ss_pred eEEEEEECCEEEEEECCcc--ccCCCHHHHHHHHHHHHHHHhCCCcEEEE-EEeCCCCceecccCHHHHhccCcchh--h
Confidence 4788889999999999996 49999999999999999999999999755 47776 69999999998754322111 1
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
+.......+.++..+||||||+|||+|+|||++|+++||+||+++++ +|++||+++
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~ 134 (261)
T PRK03580 79 FGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNA------------------------SFALPEAKL 134 (261)
T ss_pred hhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCC------------------------EEeCccccc
Confidence 11223456778999999999999999999999999999999999877 999999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|++|++++|++++|..++++++++|+.++++||+++||||+|+|+ +++.+.+.+++++|+..+.
T Consensus 135 G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~ 201 (261)
T PRK03580 135 GIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-------------AELMDRARELAQQLVNSAP 201 (261)
T ss_pred CcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCH-------------hHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999997 6789999999999998765
Q ss_pred c-ccccC
Q psy9060 303 K-INRIK 308 (366)
Q Consensus 303 ~-~~~~~ 308 (366)
. +..+|
T Consensus 202 ~a~~~~K 208 (261)
T PRK03580 202 LAIAALK 208 (261)
T ss_pred HHHHHHH
Confidence 3 44444
No 58
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-41 Score=318.87 Aligned_cols=205 Identities=28% Similarity=0.455 Sum_probs=177.9
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-CCHHH
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-KTADQ 139 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~~~~~ 139 (366)
.++.+.++++++|++||||||+ .|++|.+|+.+|.++++.+++|+++++|| ++|.|+.||+|+|++++... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~--~Nal~~~~~~~l~~al~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP--VNALSRELRDELIAVFDEISERPDVRVVV-LTGAGKVFCAGADLKGRPDVIKGPGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc--cccCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCCcccCcCHHhHhhccCCchh
Confidence 3567888899999999999997 49999999999999999999999999755 57889999999999987542 12222
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
...+....++++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe 134 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENA------------------------VFGLPE 134 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCC------------------------EeeChh
Confidence 23334456778889999999999999999999999999999999999876 999999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
+++|+. |++.++++++|..+|++|+++|+.++|+||+++||||+++|+ +++.+.+.+++++++.
T Consensus 135 ~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-------------~~~~~~a~~~a~~l~~ 198 (257)
T PRK06495 135 IDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPP-------------EELMPEAMEIAREIAS 198 (257)
T ss_pred hccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHHh
Confidence 999996 456789999999999999999999999999999999999987 6789999999999998
Q ss_pred Cccc-ccccC
Q psy9060 300 GKLK-INRIK 308 (366)
Q Consensus 300 ~~~~-~~~~~ 308 (366)
.++. +..+|
T Consensus 199 ~~~~a~~~~K 208 (257)
T PRK06495 199 KSPLATRLAK 208 (257)
T ss_pred CCHHHHHHHH
Confidence 7643 44444
No 59
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=5.6e-41 Score=320.34 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=178.7
Q ss_pred CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC--CcEEcCCCcchhhhc-CCH
Q psy9060 62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP--GCFIAGADISMLAAC-KTA 137 (366)
Q Consensus 62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g--~~F~aG~Dl~~~~~~-~~~ 137 (366)
.+.+.+++ +++|++||||||+ .|++|.+|+++|.++++++++|+++++||| +|.| ++||+|.||+++... .+.
T Consensus 10 ~~~i~~~~~~~~Va~itlnr~~--~Nal~~~~~~eL~~al~~~~~d~~vr~vVl-tg~g~~~~FcaG~Dl~~~~~~~~~~ 86 (278)
T PLN03214 10 TPGVRVDRRPGGIAVVWLAKEP--VNSMTLAMWRSLDDALTALENDPTVRGVVF-ASGLRRDVFTAGNDIAELYAPKTSA 86 (278)
T ss_pred CCceEEEEcCCCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHcCCCceEEEE-eCCCCCCcccCccCHHHHhccccch
Confidence 45788888 6899999999985 699999999999999999999999997655 6765 699999999987532 111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060 138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL 217 (366)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
.....+......++.++.++||||||+|||+|+|||++|+++|||||+++++ +|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a------------------------~f~~ 142 (278)
T PLN03214 87 ARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEG------------------------TMGL 142 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCC------------------------EecC
Confidence 2222333334567888999999999999999999999999999999999876 9999
Q ss_pred cchhccC-CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060 218 PEVMLGL-LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 296 (366)
Q Consensus 218 pe~~~Gl-~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~ 296 (366)
||+++|+ +|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+ +++.+.+.+++++
T Consensus 143 pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ 209 (278)
T PLN03214 143 NEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-------------AALMEAAASAMER 209 (278)
T ss_pred cHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh-------------HHHHHHHHHHHHH
Confidence 9999999 5999999999999999999999999999999999999999999987 6788999999999
Q ss_pred HhcCccc-ccccCC
Q psy9060 297 LASGKLK-INRIKP 309 (366)
Q Consensus 297 la~~~~~-~~~~~~ 309 (366)
|+..+.. +..+|.
T Consensus 210 l~~~~~~a~~~~K~ 223 (278)
T PLN03214 210 ALKLPSAARAATKA 223 (278)
T ss_pred HHcCCHHHHHHHHH
Confidence 9887643 444443
No 60
>PLN02921 naphthoate synthase
Probab=100.00 E-value=4.5e-41 Score=327.08 Aligned_cols=208 Identities=21% Similarity=0.357 Sum_probs=179.6
Q ss_pred CCcceeEEE--eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC--
Q psy9060 61 STKHFKEKA--VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK-- 135 (366)
Q Consensus 61 ~~~~i~~~~--~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~-- 135 (366)
.++.+.+++ +++|++|+||||+ +.|+||.+|+.+|.++++.++.|+++++|| ++|.| ++||+|+|++++....
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~-~~Nal~~~~~~eL~~al~~~~~d~~vrvVV-Ltg~G~k~FcaG~Dl~~~~~~~~~ 140 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPE-RRNAFRPRTVKELQRAFNDARDDSSVGVII-LTGKGTKAFCSGGDQAVRGKDGYV 140 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEE-EecCCCCceecCcChhhhhccccc
Confidence 466788887 4899999999999 789999999999999999999999999655 57877 7999999999875321
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060 136 TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL 215 (366)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
.......+ ...+++..|.++||||||+|||+|+|||++|+++||+|||++++ +|
T Consensus 141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A------------------------~f 194 (327)
T PLN02921 141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNA------------------------VF 194 (327)
T ss_pred chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCC------------------------EE
Confidence 11111111 12456788999999999999999999999999999999999987 99
Q ss_pred cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060 216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS 295 (366)
Q Consensus 216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~ 295 (366)
++||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+ +++++.+.++++
T Consensus 195 ~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-------------~~l~~~a~~~a~ 261 (327)
T PLN02921 195 GQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPL-------------DELEGETVKWCR 261 (327)
T ss_pred eCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-------------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 789999999999
Q ss_pred HHhcCccc-ccccCC
Q psy9060 296 QLASGKLK-INRIKP 309 (366)
Q Consensus 296 ~la~~~~~-~~~~~~ 309 (366)
+|+..+.. +..+|.
T Consensus 262 ~la~~~p~al~~~K~ 276 (327)
T PLN02921 262 EILRNSPTAIRVLKS 276 (327)
T ss_pred HHHccCHHHHHHHHH
Confidence 99987643 444453
No 61
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-41 Score=319.36 Aligned_cols=207 Identities=27% Similarity=0.458 Sum_probs=177.3
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH--HH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA--DQ 139 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~--~~ 139 (366)
++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+|++++...... ..
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~~~~ 79 (262)
T PRK07509 2 MDRVSVTIEDGIADVRLNRPD-KMNALDFAMFEELIATIKRLKKDRGIRAVI-LSGEGGAFCAGLDVKSVASSPGNAVKL 79 (262)
T ss_pred CceEEEEeeCCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhhCCCCeEEE-EECCCCCcCCCcCHHHHhcccchhhhh
Confidence 456888999999999999998 799999999999999999999999999755 58999999999999987642211 11
Q ss_pred HHH----HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060 140 VKQ----ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL 215 (366)
Q Consensus 140 ~~~----~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
... ....+..++..+.++||||||+|||+|+|||++|+++||+||+++++ +|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f 135 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDT------------------------KL 135 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCC------------------------Ee
Confidence 111 11234556778889999999999999999999999999999999987 99
Q ss_pred cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060 216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS 295 (366)
Q Consensus 216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~ 295 (366)
++||+++|++|++|++++|++++|..++++|+++|++++|+||+++||||+++++ +.+.+.++++
T Consensus 136 ~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---------------~~~~a~~~a~ 200 (262)
T PRK07509 136 SIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSDD---------------PLAAALALAR 200 (262)
T ss_pred ecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhch---------------HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999963 4678889999
Q ss_pred HHhcCccc-ccccCC
Q psy9060 296 QLASGKLK-INRIKP 309 (366)
Q Consensus 296 ~la~~~~~-~~~~~~ 309 (366)
+++..+.. +..+|.
T Consensus 201 ~l~~~~~~~~~~~K~ 215 (262)
T PRK07509 201 EIAQRSPDAIAAAKR 215 (262)
T ss_pred HHHhCCHHHHHHHHH
Confidence 99887543 444443
No 62
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-41 Score=316.50 Aligned_cols=198 Identities=26% Similarity=0.381 Sum_probs=171.6
Q ss_pred EeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060 69 AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQ 148 (366)
Q Consensus 69 ~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 148 (366)
++++|++|+||||+ + |++|.+|+.+|.++++.++.|++||+|| ++|.|+.||+|+|++++.............+...
T Consensus 8 ~~~~v~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK07938 8 PEPGIAEVTVDYPP-V-NALPSAGWFALADAITAAGADPDTRVVV-LRAEGRGFNAGVDIKELQATPGFTALIDANRGCF 84 (249)
T ss_pred cCCCEEEEEECCCC-c-ccCCHHHHHHHHHHHHHhhcCCCeEEEE-EECCCCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence 46899999999997 4 9999999999999999999999999755 5889999999999998764322222222334456
Q ss_pred HHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060 149 QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA 228 (366)
Q Consensus 149 ~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~ 228 (366)
+++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+++|++
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a------------------------~f~~pe~~~G~~--- 137 (249)
T PRK07938 85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDA------------------------TFGLPEVDRGAL--- 137 (249)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCC------------------------EeeCccceecCc---
Confidence 78889999999999999999999999999999999999887 999999999986
Q ss_pred hHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-cccc
Q psy9060 229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRI 307 (366)
Q Consensus 229 gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~~~~ 307 (366)
|++.+|++++|..++++|+++|+.++++||+++||||+|||+ +++++.+.+++++|+..+.. +..+
T Consensus 138 g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~a~~~~ 204 (249)
T PRK07938 138 GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPR-------------DQLDEAALEVARKIAAKDTRVIRAA 204 (249)
T ss_pred hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCH-------------HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456789999999999999999999999999999999999987 78999999999999987643 4444
Q ss_pred CC
Q psy9060 308 KP 309 (366)
Q Consensus 308 ~~ 309 (366)
|.
T Consensus 205 K~ 206 (249)
T PRK07938 205 KE 206 (249)
T ss_pred HH
Confidence 43
No 63
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-40 Score=317.92 Aligned_cols=203 Identities=23% Similarity=0.357 Sum_probs=170.6
Q ss_pred ccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhc-----CCCccEEEEEeeC-CCcEEcCCCcchhh
Q psy9060 59 KNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQS-----DSSIRSAVIISGK-PGCFIAGADISMLA 132 (366)
Q Consensus 59 k~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~-----d~~v~~vVl~~g~-g~~F~aG~Dl~~~~ 132 (366)
+...-.+.++.+++|++|+|| |+ +.|++|.+|+++|.++++++++ |++|++||+ +|. |+.||+|+||+++.
T Consensus 13 ~~~~~~i~~e~~~~ia~itl~-p~-~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVl-tg~~gk~FcaG~Dl~~~~ 89 (287)
T PRK08788 13 ELSQLRVYYEEERNVMWMYMR-AQ-PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVL-ASDVPGVFNLGGDLALFA 89 (287)
T ss_pred ccCceEEEEEccCCEEEEEEC-CC-CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEE-EcCCCCceEeCcCHHHHh
Confidence 444456677778999999996 87 7899999999999999999998 899997665 676 78999999999875
Q ss_pred hc---CCHHHHHHHHHHHHHHHHHHH---cCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhh
Q psy9060 133 AC---KTADQVKQISKSGQQILSEIE---SSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRI 206 (366)
Q Consensus 133 ~~---~~~~~~~~~~~~~~~~~~~i~---~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~ 206 (366)
.. ................+.++. .+||||||+|||+|+|||++|+++||+||+++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a----------------- 152 (287)
T PRK08788 90 ELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGA----------------- 152 (287)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCC-----------------
Confidence 32 111111112222233334443 7999999999999999999999999999999887
Q ss_pred hcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHH
Q psy9060 207 VVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL 286 (366)
Q Consensus 207 ~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l 286 (366)
+|++||+++|++|++|++++|++++|..++++|+++|+.++++||+++||||+++|+ +++
T Consensus 153 -------~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-------------~el 212 (287)
T PRK08788 153 -------KMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVED-------------GQG 212 (287)
T ss_pred -------EeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-------------hHH
Confidence 999999999999999999999999999999999999999999999999999999987 678
Q ss_pred HHHHHHHHHHHhcCc
Q psy9060 287 EEVAVNTASQLASGK 301 (366)
Q Consensus 287 ~~~a~~~a~~la~~~ 301 (366)
.+.+.+++++|+..+
T Consensus 213 ~~~a~~~a~~ia~~~ 227 (287)
T PRK08788 213 EAAVRTFIRKSKRKL 227 (287)
T ss_pred HHHHHHHHHHHhcCc
Confidence 888999999998653
No 64
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-40 Score=319.71 Aligned_cols=208 Identities=24% Similarity=0.396 Sum_probs=176.9
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC----
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---- 136 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~---- 136 (366)
+++.+.++.+++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+||+++.....
T Consensus 2 ~~~~v~~~~~~~Va~ItlnrP~-~~Nal~~~~~~eL~~~l~~~~~d~~vrvvV-ltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 2 EYEYVRYEVAGRIARITLNRPE-ARNAQNRQMLYELDAAFRRAEADDAVRVIV-LAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCceEEEEeeCCEEEEEecCcc-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCccccCCCccccccccccccc
Confidence 4566888999999999999998 789999999999999999999999999755 5889999999999998732110
Q ss_pred --------------H---HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhh
Q psy9060 137 --------------A---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVA 199 (366)
Q Consensus 137 --------------~---~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~ 199 (366)
. .........+.+++..+.++||||||+|||+|+|||++|+++||+||+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a---------- 149 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDA---------- 149 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCC----------
Confidence 0 0111112334567788999999999999999999999999999999999987
Q ss_pred hhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcc
Q psy9060 200 LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPE 279 (366)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~ 279 (366)
+|++||+++|+ |+ .+++++++++|..++++|++||+.++|+||+++||||++||+
T Consensus 150 --------------~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~--------- 204 (288)
T PRK08290 150 --------------FFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPR--------- 204 (288)
T ss_pred --------------EecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH---------
Confidence 99999999998 54 457788999999999999999999999999999999999987
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccc-ccccCC
Q psy9060 280 ERTMEYLEEVAVNTASQLASGKLK-INRIKP 309 (366)
Q Consensus 280 ~~~~~~l~~~a~~~a~~la~~~~~-~~~~~~ 309 (366)
+++.+.+.+++++|+..+.. +..+|.
T Consensus 205 ----~~l~~~a~~~a~~la~~~~~a~~~~K~ 231 (288)
T PRK08290 205 ----DELEAETLELARRIAAMPPFGLRLTKR 231 (288)
T ss_pred ----HHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67999999999999988643 444443
No 65
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1.8e-40 Score=310.30 Aligned_cols=200 Identities=27% Similarity=0.377 Sum_probs=172.0
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-CCHHHHHHH
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-KTADQVKQI 143 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~~~~~~~~~ 143 (366)
+.++++++|++|+||||+ + |++|.+|+.+|.++++.++.|++++.+||++|.|+.||+|+||+++... ........+
T Consensus 2 ~~~~~~~~v~~i~Lnrp~-~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 79 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDG-E-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM 79 (239)
T ss_pred ceeEecCCEEEEEeCCCC-c-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence 456778999999999997 4 9999999999999999999999987677789999999999999987532 122223334
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060 144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG 223 (366)
Q Consensus 144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G 223 (366)
...+++++.++.++||||||+|||+|+|||++|+++||+|||+++. + +|++||+++|
T Consensus 80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~-a----------------------~f~~pe~~~G 136 (239)
T PLN02267 80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDR-G----------------------VLYMSEVDIG 136 (239)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCC-C----------------------eEeccccccC
Confidence 5566788899999999999999999999999999999999998542 2 8999999999
Q ss_pred CCCChhHHhHHhhhcCHHHH-HHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060 224 LLPGAGGTQRLPKLTALPNV-LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301 (366)
Q Consensus 224 l~p~~gg~~~l~r~~G~~~a-~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~ 301 (366)
++++++++.++++++|..++ ++|+++|++++|+||+++||||+++|+. +++.+.+.++|++|+..+
T Consensus 137 l~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~------------~~l~~~a~~~A~~ia~~~ 203 (239)
T PLN02267 137 LPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSA------------EETVEAAVRLGEELAARK 203 (239)
T ss_pred CCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCH------------HHHHHHHHHHHHHHhhcc
Confidence 97444458899999999999 6999999999999999999999999851 578899999999998764
No 66
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-40 Score=314.93 Aligned_cols=205 Identities=26% Similarity=0.417 Sum_probs=176.5
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQV 140 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~~ 140 (366)
..+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++... ......
T Consensus 6 ~~i~~~~~~~v~~i~lnrp~-~~Nal~~~~~~el~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 83 (260)
T PRK07827 6 TLVRYAVDGGVATLTLDSPH-NRNALSARLVAQLHDGLRAAAADPAVRAVV-LTHTGGTFCAGADLSEAGGGGGDPYDAA 83 (260)
T ss_pred cceEEEeeCCEEEEEEcCcc-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EEcCCCCccCCcChHHHhhcccCchhHH
Confidence 35778888999999999998 799999999999999999999999999755 58889999999999987542 111122
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+...+.+++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~ 139 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPES------------------------TFALTEA 139 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCC------------------------EEeCccc
Confidence 2344556778899999999999999999999999999999999999877 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|++|+++++++++ ..++++|+++|+.++|+||+++||||++++ ++.+.+.++++++++.
T Consensus 140 ~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---------------~l~~~a~~~a~~la~~ 203 (260)
T PRK07827 140 RIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD---------------DVDAAVAALLADLRRG 203 (260)
T ss_pred ccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH---------------HHHHHHHHHHHHHHhC
Confidence 999999999999999875 569999999999999999999999999974 3778889999999987
Q ss_pred ccc-ccccCC
Q psy9060 301 KLK-INRIKP 309 (366)
Q Consensus 301 ~~~-~~~~~~ 309 (366)
+.. +..+|.
T Consensus 204 ~~~a~~~~K~ 213 (260)
T PRK07827 204 SPQGLAESKA 213 (260)
T ss_pred CHHHHHHHHH
Confidence 643 434443
No 67
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-40 Score=311.02 Aligned_cols=194 Identities=26% Similarity=0.419 Sum_probs=168.6
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 144 (366)
+.++++++|++||||||+ +.|++|.+|+.+|.++++.++.| ++++|| ++|.|+.||+|+|+++... ...+.
T Consensus 2 ~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~~-~vr~vv-l~g~g~~F~aG~Dl~~~~~------~~~~~ 72 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPE-RRNALNAELCEELREAVRKAVDE-SARAIV-LTGQGTVFCAGADLSGDVY------ADDFP 72 (243)
T ss_pred ceEEEeCCEEEEEeCCCc-cccCCCHHHHHHHHHHHHHHhcC-CceEEE-EECCCCceecccCCccchh------HHHHH
Confidence 567788999999999999 78999999999999999999865 899654 5889999999999985311 12233
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL 224 (366)
Q Consensus 145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl 224 (366)
..+..++..+.++|||+||+|||+|+|||++|+++||+|||++++ +|++||+++|+
T Consensus 73 ~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~~~G~ 128 (243)
T PRK07854 73 DALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEA------------------------YFQFPVAKYGI 128 (243)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCC------------------------EEecccccccc
Confidence 445678889999999999999999999999999999999999887 99999999999
Q ss_pred CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-
Q psy9060 225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK- 303 (366)
Q Consensus 225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~- 303 (366)
+|++|++++|++++|..+|++|+++|++++|+||+++||||+|++. + .+.+++++|+..+..
T Consensus 129 ~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-------------~----~a~~~a~~l~~~~~~a 191 (243)
T PRK07854 129 ALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTL-------------A----DAQAWAAEIAGLAPLA 191 (243)
T ss_pred CCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccCH-------------H----HHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999752 2 578888888887543
Q ss_pred ccccC
Q psy9060 304 INRIK 308 (366)
Q Consensus 304 ~~~~~ 308 (366)
+...|
T Consensus 192 ~~~~K 196 (243)
T PRK07854 192 LQHAK 196 (243)
T ss_pred HHHHH
Confidence 43344
No 68
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=3.2e-40 Score=310.77 Aligned_cols=191 Identities=25% Similarity=0.414 Sum_probs=164.9
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 144 (366)
+.++++++|++||||||+ .|++|.+|+++|.++++.++.|++++++| ++|.|++||+|.|++++.. .....+.
T Consensus 3 v~~~~~~~v~~itlnrp~--~Nal~~~~~~~l~~~l~~~~~~~~vr~vV-l~g~g~~FcaG~Dl~~~~~----~~~~~~~ 75 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK--ANIVDAAMIAALSAALGEHLEDSALRAVL-LDAEGPHFSFGASVAEHMP----DQCAAML 75 (251)
T ss_pred EEEEeeCCEEEEEeCCCC--cCCCCHHHHHHHHHHHHHHHcCCCceEEE-EECCCCceecCcChhhhCc----hhHHHHH
Confidence 567888999999999996 49999999999999999999999999655 5899999999999997532 1112233
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL 224 (366)
Q Consensus 145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl 224 (366)
....+++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|+
T Consensus 76 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~~~Gl 131 (251)
T TIGR03189 76 ASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA------------------------KLGQPEIVLGV 131 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCC------------------------EEeCchhhcCC
Confidence 455678889999999999999999999999999999999999987 99999999999
Q ss_pred CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHH-HHHHhcCcc
Q psy9060 225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT-ASQLASGKL 302 (366)
Q Consensus 225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~-a~~la~~~~ 302 (366)
+|+ +++++|++++|..+|++|+++|++++|+||+++||||+|+++ .+ +.+.++ +++++..++
T Consensus 132 ~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-------------~~--~~a~~~~a~~la~~~p 194 (251)
T TIGR03189 132 FAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED-------------PE--NAALAWFDEHPAKLSA 194 (251)
T ss_pred CCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc-------------HH--HHHHHHHHHHHHhCCH
Confidence 997 467899999999999999999999999999999999999975 22 345555 577777654
No 69
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=3.5e-40 Score=318.31 Aligned_cols=209 Identities=18% Similarity=0.289 Sum_probs=176.7
Q ss_pred CCcceeEEE--eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-------CcEEcCCCcchh
Q psy9060 61 STKHFKEKA--VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-------GCFIAGADISML 131 (366)
Q Consensus 61 ~~~~i~~~~--~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-------~~F~aG~Dl~~~ 131 (366)
.++.+.+++ +++|++||||||+ +.|++|.+|+.+|.++++.++.|+++++||| +|.| ++||+|+||+++
T Consensus 21 ~~~~i~~~~~~~~~va~itlnrP~-~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl-tg~g~~~~~~~~~FcaG~Dl~~~ 98 (302)
T PRK08321 21 DFTDITYHRAVDQGTVRIAFDRPE-VRNAFRPHTVDELYRALDHARMSPDVGCVLL-TGNGPSPKDGGWAFCSGGDQRIR 98 (302)
T ss_pred CceeEEEEEecCCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEE-eCCCCCCCCCCCeeecCcChhhh
Confidence 456788888 8899999999999 7899999999999999999999999997554 7766 599999999976
Q ss_pred hhcC------CH-H--HHHHHH-HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEe-cCCccCCCchhhhh
Q psy9060 132 AACK------TA-D--QVKQIS-KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV-KDKKTGLGLPEVAL 200 (366)
Q Consensus 132 ~~~~------~~-~--~~~~~~-~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~-~~ak~~~~~~~~~~ 200 (366)
.... .. . ...... ....+++..+..+||||||+|||+|+|||++|+++||+|||+ +++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a----------- 167 (302)
T PRK08321 99 GRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHA----------- 167 (302)
T ss_pred ccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCC-----------
Confidence 3210 00 0 000111 112346677889999999999999999999999999999999 566
Q ss_pred hhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcch
Q psy9060 201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE 280 (366)
Q Consensus 201 ~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~ 280 (366)
+|++||+++|++|+++++.+|++++|..+|++|+++|+.++|+||+++||||++||+
T Consensus 168 -------------~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~---------- 224 (302)
T PRK08321 168 -------------RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPH---------- 224 (302)
T ss_pred -------------EEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCH----------
Confidence 899999999999999999999999999999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHHHHhcCccc-ccccC
Q psy9060 281 RTMEYLEEVAVNTASQLASGKLK-INRIK 308 (366)
Q Consensus 281 ~~~~~l~~~a~~~a~~la~~~~~-~~~~~ 308 (366)
+++.+.+.+++++|+..+.. +..+|
T Consensus 225 ---~~l~~~a~~~a~~la~~~~~a~~~~K 250 (302)
T PRK08321 225 ---AELETEALEWAREINGKSPTAMRMLK 250 (302)
T ss_pred ---HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 67999999999999987643 44444
No 70
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-40 Score=317.90 Aligned_cols=206 Identities=23% Similarity=0.371 Sum_probs=176.0
Q ss_pred CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH---
Q psy9060 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA--- 137 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~--- 137 (366)
+++.+.++.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++......
T Consensus 8 ~~~~v~~e~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~al~~~~~d~~vrvvV-l~G~G~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 8 NLKTMTYEVTGRIARITLNRPE-KGNAITADTPLELRAAVERADLDPGVHVIL-VSGAGKGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred CCCeEEEEeECCEEEEEecCcc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EEcCCCCcccCcCHHHHhhccccccc
Confidence 4567889999999999999999 799999999999999999999999999655 58999999999999987542110
Q ss_pred -------------------HHH--HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCch
Q psy9060 138 -------------------DQV--KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLP 196 (366)
Q Consensus 138 -------------------~~~--~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~ 196 (366)
... .......++++..+.++||||||+|||+|+|||++|+++||+|||++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a------- 158 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDA------- 158 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCC-------
Confidence 000 0123445677889999999999999999999999999999999999987
Q ss_pred hhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCC
Q psy9060 197 EVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLN 276 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~ 276 (366)
+|++||+++|.+|+. .++++++|..+|++|++||++++++||+++||||+++|+
T Consensus 159 -----------------~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~------ 212 (302)
T PRK08272 159 -----------------KIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP------ 212 (302)
T ss_pred -----------------EecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCH------
Confidence 999999998666653 367889999999999999999999999999999999987
Q ss_pred CcchhhHHHHHHHHHHHHHHHhcCccc-ccccC
Q psy9060 277 HPEERTMEYLEEVAVNTASQLASGKLK-INRIK 308 (366)
Q Consensus 277 ~~~~~~~~~l~~~a~~~a~~la~~~~~-~~~~~ 308 (366)
+++.+.+.++|++|+..+.. +...|
T Consensus 213 -------~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 213 -------EELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred -------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78999999999999987643 33344
No 71
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-40 Score=309.08 Aligned_cols=198 Identities=27% Similarity=0.367 Sum_probs=171.8
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 144 (366)
+.++.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|+.||+|.|++++... ....+.
T Consensus 2 i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~a~~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~----~~~~~~ 75 (248)
T PRK06072 2 IKVESREGYAIVTMSRPD-KLNALNLEMRNEFISKLKQINADPKIRVVI-VTGEGRAFCVGADLSEFAPD----FAIDLR 75 (248)
T ss_pred eEEEEECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCCcccCcCHHHHhhh----hHHHHH
Confidence 467788999999999998 799999999999999999999999999755 57889999999999987531 112234
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL 224 (366)
Q Consensus 145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl 224 (366)
+.++.++..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|+
T Consensus 76 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~~~~~~Gl 131 (248)
T PRK06072 76 ETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDV------------------------KFVTAFQRLGL 131 (248)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC------------------------EEecchhhcCc
Confidence 456678889999999999999999999999999999999999987 89999999999
Q ss_pred CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-c
Q psy9060 225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-K 303 (366)
Q Consensus 225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-~ 303 (366)
+|++|+++++++++|. ++++++++|+.++|+||+++||||++ + ++.+.+.++|++++..++ .
T Consensus 132 ~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~-~---------------~~~~~a~~~a~~la~~~~~a 194 (248)
T PRK06072 132 ASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS-E---------------DPLSDAEEMANRISNGPFQS 194 (248)
T ss_pred CCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc-c---------------hHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999996 89999999999999999999999953 2 245778899999988764 3
Q ss_pred ccccCC
Q psy9060 304 INRIKP 309 (366)
Q Consensus 304 ~~~~~~ 309 (366)
+..+|.
T Consensus 195 ~~~~K~ 200 (248)
T PRK06072 195 YIAAKR 200 (248)
T ss_pred HHHHHH
Confidence 444453
No 72
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-39 Score=302.70 Aligned_cols=195 Identities=24% Similarity=0.392 Sum_probs=173.7
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI 143 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 143 (366)
.+.++.+++|++|+||||+ .|++|.+++++|.++++.++ +++++ ||++|.|+.||+|+|++++... ......+
T Consensus 4 ~i~~~~~~~v~~itln~~~--~Nal~~~~~~~l~~~l~~~~--~~~~v-vvl~g~g~~F~~G~Dl~~~~~~--~~~~~~~ 76 (229)
T PRK06213 4 LVSYTLEDGVATITLDDGK--VNALSPAMIDALNAALDQAE--DDRAV-VVITGQPGIFSGGFDLKVMTSG--AQAAIAL 76 (229)
T ss_pred eEEEEecCCEEEEEeCCCC--CCCCCHHHHHHHHHHHHHhh--ccCcE-EEEeCCCCceEcCcCHHHHhcc--hHhHHHH
Confidence 5788888999999999985 69999999999999999987 45675 5568999999999999988642 2333445
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC-CccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060 144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD-KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222 (366)
Q Consensus 144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 222 (366)
...+.+++.++.++||||||+|||+|+|||++|+++|||||++++ + +|++||+++
T Consensus 77 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a------------------------~f~~pe~~~ 132 (229)
T PRK06213 77 LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPF------------------------KIGLNEVAI 132 (229)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCc------------------------EEECchhhh
Confidence 556678889999999999999999999999999999999999987 5 899999999
Q ss_pred cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~ 302 (366)
|++|+++++.++++++|...+++++++|+.++++||+++||||+|+|+ +++.+.+.+++++++..+.
T Consensus 133 Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~ 199 (229)
T PRK06213 133 GMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPP-------------EQLLARAQAAARELAGLNM 199 (229)
T ss_pred CCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccCh-------------HHHHHHHHHHHHHHhcCCH
Confidence 999888888999999999999999999999999999999999999987 6789999999999987654
No 73
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=7.8e-40 Score=325.10 Aligned_cols=198 Identities=22% Similarity=0.354 Sum_probs=169.7
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC---CHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK---TAD 138 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~---~~~ 138 (366)
...+.++++++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++| |++|.|++||+|+||+++.... ...
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~-~lNALs~~m~~~L~~al~~~~~D~~vrvV-Vl~G~GkaFcAGgDl~~l~~~~~~~~~~ 113 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPP-ALNALTTHMGYRLQKLYKNWEEDPNIGFV-MMKGSGRAFCAGGDIVSLYHLRKRGSPD 113 (401)
T ss_pred CCceEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHhhCCCCeEE-EEECCCCCccCCcCHHHHHhhccccchH
Confidence 345778889999999999999 79999999999999999999999999965 5588889999999999886421 111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
....+.....+++..|.++|||+||+|||+|+|||++|+++||+||+++++ +|++|
T Consensus 114 ~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a------------------------~fa~P 169 (401)
T PLN02157 114 AIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRT------------------------IFATP 169 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCC------------------------EEECh
Confidence 222333344456778999999999999999999999999999999999987 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la 298 (366)
|+++|++|++|++++|+|++|. .+++|++||+.++++||+++||||++||+ +++ +.+.+++.+++
T Consensus 170 E~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-------------~~l-~~~~~~~~~i~ 234 (401)
T PLN02157 170 ETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRS-------------EEI-PVMEEQLKKLL 234 (401)
T ss_pred hhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCH-------------hHH-HHHHHHHHHHH
Confidence 9999999999999999999995 89999999999999999999999999987 445 44556666666
Q ss_pred cC
Q psy9060 299 SG 300 (366)
Q Consensus 299 ~~ 300 (366)
..
T Consensus 235 ~~ 236 (401)
T PLN02157 235 TD 236 (401)
T ss_pred cC
Confidence 54
No 74
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1e-39 Score=308.04 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=169.9
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH-H
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ-V 140 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~-~ 140 (366)
++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++ ++++++ |++|.|++||+|+||+++........ .
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~--~~vr~v-Vl~g~g~~FsaG~Dl~~~~~~~~~~~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPE-AQNTINDRLIAECMDVLDRCE--HAATIV-VLEGLPEVFCFGADFSAIAEKPDAGRAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHhh--cCceEE-EEEcCCCCcccCcCHHHHhhccccchhh
Confidence 567889999999999999998 789999999999999999998 358865 45888999999999998764221111 1
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
.........++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~ 134 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETA------------------------PFSLSEL 134 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCC------------------------EEeCchh
Confidence 1112344678889999999999999999999999999999999999876 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
++|++|+++ +.+|++++|..++++|+++|+.++|+||+++||||+|+|+ ++ ..+.+++++++..
T Consensus 135 ~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~--~~~~~~a~~l~~~ 198 (255)
T PRK07112 135 LFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN-------------SD--TLLRKHLLRLRCL 198 (255)
T ss_pred hhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCc-------------HH--HHHHHHHHHHHhC
Confidence 999999865 5689999999999999999999999999999999999986 22 2356788888777
Q ss_pred cc-cccccCC
Q psy9060 301 KL-KINRIKP 309 (366)
Q Consensus 301 ~~-~~~~~~~ 309 (366)
++ .+..+|.
T Consensus 199 ~p~a~~~~K~ 208 (255)
T PRK07112 199 NKAAVARYKS 208 (255)
T ss_pred CHHHHHHHHH
Confidence 54 3444443
No 75
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=8.8e-40 Score=320.38 Aligned_cols=180 Identities=27% Similarity=0.436 Sum_probs=159.1
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC---CHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK---TADQ 139 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~---~~~~ 139 (366)
.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.| +.||+|+|++++.... ....
T Consensus 4 ~v~~~~~~~v~~itLnrP~-~~Nal~~~m~~~L~~~l~~~~~d~~vrvvV-ltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 4 EVLAEVEGGVGVITLNRPK-ALNALSLEMIRAIDAALDAWEDDDAVAAVV-IEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred eEEEEEECCEEEEEECCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 5788889999999999999 799999999999999999999999999755 57777 8999999999875421 1111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
...+.....+++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||
T Consensus 82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a------------------------~f~~pe 137 (342)
T PRK05617 82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERT------------------------KMAMPE 137 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCC------------------------EeeCCc
Confidence 11233344568889999999999999999999999999999999999887 999999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+++|++|++|++++|++++| .+|++|++||+.++|+||+++||||+++|+
T Consensus 138 ~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~ 187 (342)
T PRK05617 138 TGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPS 187 (342)
T ss_pred cccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCH
Confidence 99999999999999999877 789999999999999999999999999987
No 76
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-39 Score=314.46 Aligned_cols=205 Identities=25% Similarity=0.337 Sum_probs=169.1
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcch-hhh----c--
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM-LAA----C-- 134 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~-~~~----~-- 134 (366)
++.+.++++++|++|+||||+ +.|+||.+|+++|.++++.++.|++|++|| ++|.|++||+|+||++ +.. .
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~-~~NAl~~~~~~eL~~al~~~~~d~~vrvvV-LtG~G~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPE-QLNTIVPPMPDEIEAAIGLAERDQDIKVIV-LRGAGRAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred ceEEEEeccCCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcccCcCccccccccchhccc
Confidence 456888889999999999999 799999999999999999999999999755 5899999999999986 311 0
Q ss_pred CC-HHHHHHH---HH---HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhh
Q psy9060 135 KT-ADQVKQI---SK---SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIV 207 (366)
Q Consensus 135 ~~-~~~~~~~---~~---~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~ 207 (366)
.. ......+ .. ..+..+..+.++||||||+|||+|+|||++|+++||+|||++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A------------------ 143 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDA------------------ 143 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCc------------------
Confidence 00 0001111 11 11345677899999999999999999999999999999999987
Q ss_pred cccccccccccchhc-cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHH
Q psy9060 208 VKDKKTGLGLPEVML-GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL 286 (366)
Q Consensus 208 ~~~~~~~~~~pe~~~-Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l 286 (366)
+|++||+++ |++++ +++ .+++|..+|++|+++|++++|+||+++||||+|||+ +++
T Consensus 144 ------~f~~pe~~l~G~~~~--~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-------------~~l 200 (298)
T PRK12478 144 ------VIGTPYSRMWGAYLT--GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF-------------ERL 200 (298)
T ss_pred ------EEeccccccccCCch--hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCH-------------HHH
Confidence 999999997 88863 333 356999999999999999999999999999999997 789
Q ss_pred HHHHHHHHHHHhcCccc-ccccCC
Q psy9060 287 EEVAVNTASQLASGKLK-INRIKP 309 (366)
Q Consensus 287 ~~~a~~~a~~la~~~~~-~~~~~~ 309 (366)
.+.+.+++++|+..+.. +...|.
T Consensus 201 ~~~a~~~a~~la~~~p~a~~~~K~ 224 (298)
T PRK12478 201 EARVAEVATELARIPLSQLQAQKL 224 (298)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999987543 444453
No 77
>KOG1679|consensus
Probab=100.00 E-value=1.7e-40 Score=295.13 Aligned_cols=212 Identities=29% Similarity=0.544 Sum_probs=189.3
Q ss_pred CcceeEEE----eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH
Q psy9060 62 TKHFKEKA----VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA 137 (366)
Q Consensus 62 ~~~i~~~~----~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~ 137 (366)
...+.+++ +.+|.+|-+|||. +.|.++.-|+++|.++++.+..|+.+|+|++.|..++.||+|+||++...+ ++
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa-~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M-s~ 103 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPA-KKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM-SP 103 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChh-hhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC-CH
Confidence 34566654 5689999999998 789999999999999999999999999999889999999999999998774 56
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060 138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL 217 (366)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
.+...+...+..++..|+++|.|+||+|+|.++|||+|++|+||+|+|++++ +||+
T Consensus 104 ~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~a------------------------kmGL 159 (291)
T KOG1679|consen 104 SEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSA------------------------KMGL 159 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhc------------------------cccc
Confidence 7888899999999999999999999999999999999999999999999987 8999
Q ss_pred cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060 218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL 297 (366)
Q Consensus 218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l 297 (366)
+|.+++++||+||||||||.+|...|+++++|++.+++.||...||||.+|.... ..+...+.|.++|++|
T Consensus 160 vET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qne---------egdaa~~kal~lA~ei 230 (291)
T KOG1679|consen 160 VETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNE---------EGDAAYQKALELAREI 230 (291)
T ss_pred cccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCc---------cccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999997521 1145677889999987
Q ss_pred hcC-cccccccC
Q psy9060 298 ASG-KLKINRIK 308 (366)
Q Consensus 298 a~~-~~~~~~~~ 308 (366)
... |..++..|
T Consensus 231 lp~gPiavr~aK 242 (291)
T KOG1679|consen 231 LPQGPIAVRLAK 242 (291)
T ss_pred ccCCchhhhHHH
Confidence 654 55554444
No 78
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3e-39 Score=320.37 Aligned_cols=185 Identities=22% Similarity=0.353 Sum_probs=161.6
Q ss_pred ccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-CH
Q psy9060 59 KNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-TA 137 (366)
Q Consensus 59 k~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-~~ 137 (366)
......+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++.... ..
T Consensus 7 ~~~~~~v~~~~~~~v~~ItLnrP~-~~Nal~~~m~~eL~~al~~~~~d~~vrvvV-l~g~g~~FcaG~Dl~~~~~~~~~~ 84 (379)
T PLN02874 7 NPAEEVVLGEEKGRVRVITLNRPR-QLNVISLSVVSLLAEFLEQWEKDDSVELII-IKGAGRAFSAGGDLKMFYDGRESD 84 (379)
T ss_pred CCCCCceEEEEECCEEEEEECCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCCccCccCHHHHHhhcccc
Confidence 344567888889999999999999 789999999999999999999999999655 588889999999999885421 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060 138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL 217 (366)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
............++..|.++|||+||+|||+|+|||++|+++||+||+++++ +|++
T Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a------------------------~f~~ 140 (379)
T PLN02874 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKT------------------------VFAT 140 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCe------------------------EEec
Confidence 1222223334456778999999999999999999999999999999999887 9999
Q ss_pred cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
||+++|++|++|++++|+|++|. .+++|++||++++++||+++||||++||+
T Consensus 141 pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 141 PEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPS 192 (379)
T ss_pred cccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCH
Confidence 99999999999999999999885 89999999999999999999999999986
No 79
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=7.1e-39 Score=310.66 Aligned_cols=172 Identities=24% Similarity=0.370 Sum_probs=155.1
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC--CHHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK--TADQVKQISKSGQQ 149 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~--~~~~~~~~~~~~~~ 149 (366)
+++|+||||+ +.|++|.+|+.+|.++++.+..|++|++|| ++|.| ++||+|+|++++.... +......+.+.+++
T Consensus 38 ~A~ItLNRP~-k~NAls~~ml~eL~~al~~~~~D~dVrvVV-LTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~ 115 (360)
T TIGR03200 38 NAWIILDNPK-QYNSYTTDMVKAIILAFRRASSDRDVVAVV-FTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFND 115 (360)
T ss_pred EEEEEECCCC-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHH
Confidence 4569999998 789999999999999999999999999755 47777 6999999999886521 22333445555678
Q ss_pred HHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh
Q psy9060 150 ILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG 229 (366)
Q Consensus 150 ~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g 229 (366)
++..+..+||||||+|||+|+|||++|+++||+||+++++ +|++||+++|++|++|
T Consensus 116 l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A------------------------~Fg~PE~rlGl~P~~G 171 (360)
T TIGR03200 116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLA------------------------NFGQAGPKHGSAPIGG 171 (360)
T ss_pred HHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCC------------------------EEeCchhccCCCCCcc
Confidence 8899999999999999999999999999999999999987 9999999999999999
Q ss_pred HHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 230 g~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
++++|++++|..+|++|+++|++++|+||+++||||+|+|+
T Consensus 172 gt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~ 212 (360)
T TIGR03200 172 ATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212 (360)
T ss_pred HHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCc
Confidence 99999999999999999999999999999999999999987
No 80
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=6.6e-38 Score=310.15 Aligned_cols=195 Identities=21% Similarity=0.371 Sum_probs=166.0
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH---HHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA---DQV 140 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~---~~~ 140 (366)
.+.++.+++|++|+||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.|++||+|+|++++...... ...
T Consensus 10 ~v~~~~~~~i~~ItLnRP~-~lNALs~~m~~~L~~al~~~~~d~~v~~VV-l~G~G~~FcAGgDl~~l~~~~~~~~~~~~ 87 (381)
T PLN02988 10 QVLVEEKSSVRILTLNRPK-QLNALSFHMISRLLQLFLAFEEDPSVKLVI-LKGHGRAFCAGGDVAAVVRDIEQGNWRLG 87 (381)
T ss_pred ceEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCeeEEE-EECCCCCcccCcCHHHHHhhhcccchhHH
Confidence 5777888999999999999 799999999999999999999999999755 58888999999999987532111 111
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 220 (366)
..+......+...+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+
T Consensus 88 ~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a------------------------~f~mPE~ 143 (381)
T PLN02988 88 ANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENT------------------------VFAMPET 143 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCc------------------------EEeChhh
Confidence 2222223345667899999999999999999999999999999999876 9999999
Q ss_pred hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060 221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299 (366)
Q Consensus 221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~ 299 (366)
++|++|+.|++++|+|++|. .+++|++||+++++++|+++||||++||+ +++.+.+.+++ +++.
T Consensus 144 ~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-------------~~l~~~~~~la-~~~~ 207 (381)
T PLN02988 144 ALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPS-------------TRLTALEADLC-RIGS 207 (381)
T ss_pred hcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCH-------------hHHHHHHHHHH-Hhhc
Confidence 99999999999999999997 68999999999999999999999999987 55666666666 4443
No 81
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=9.8e-38 Score=320.22 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=173.2
Q ss_pred eeEEEeCCEEEEEecCCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCccEEEEEeeCCCc-EEcCCCcc
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKV-------------NSLNSEVMSEIQSILRRIQS-DSSIRSAVIISGKPGC-FIAGADIS 129 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~-------------Nal~~~~~~eL~~al~~~~~-d~~v~~vVl~~g~g~~-F~aG~Dl~ 129 (366)
+.++++++|++||||||+ +. |+++.+|+.+|.++++.++. |++|+++| ++|.|+. ||+|+||+
T Consensus 260 v~~~~~~~va~itlnrP~-~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vV-l~g~G~~~F~aG~Dl~ 337 (546)
T TIGR03222 260 VAIDRAARTATITLKGPK-AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWV-FRTQGDAELVLAADAL 337 (546)
T ss_pred EEEeccCCEEEEEecChh-hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEE-EEcCCCCceecCcCcc
Confidence 344557899999999998 78 99999999999999999984 59999755 5788887 99999998
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe-ccccchhH-HHHHhhccEEEE-------ecCCccCCCchhhhh
Q psy9060 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI-SGSCLGGG-LEVALACHYRIA-------VKDKKTGLGLPEVAL 200 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav-~G~a~GgG-~elalacD~ria-------~~~ak~~~~~~~~~~ 200 (366)
.+.. .+...........+.++.+|.++|||+||+| ||+|+||| ++|+++||+||+ ++++
T Consensus 338 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a----------- 405 (546)
T TIGR03222 338 LEAH-KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEP----------- 405 (546)
T ss_pred cccc-ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCC-----------
Confidence 4322 1111122233344668899999999999999 89999999 999999999999 7776
Q ss_pred hhhhhhhcccccccccccchhccCCCChhHHhHHhhhc-CHHHH--HHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCC
Q psy9060 201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT-ALPNV--LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNH 277 (366)
Q Consensus 201 ~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~-G~~~a--~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~ 277 (366)
+|++||+++|++|++|++++|++++ |..++ ++|+++|+.++|+||+++|||++|+|+
T Consensus 406 -------------~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~------- 465 (546)
T TIGR03222 406 -------------AITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD------- 465 (546)
T ss_pred -------------EEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-------
Confidence 9999999999999999999999998 99999 559999999999999999999999987
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCcc-cccccC
Q psy9060 278 PEERTMEYLEEVAVNTASQLASGKL-KINRIK 308 (366)
Q Consensus 278 ~~~~~~~~l~~~a~~~a~~la~~~~-~~~~~~ 308 (366)
+++++.+.+++++|++.++ .+...|
T Consensus 466 ------~~l~~~a~~~a~~la~~~p~a~~~~K 491 (546)
T TIGR03222 466 ------IDWEDEIRIALEERASFSPDALTGLE 491 (546)
T ss_pred ------hHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6788999999999998864 344444
No 82
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=9.9e-38 Score=321.04 Aligned_cols=207 Identities=20% Similarity=0.308 Sum_probs=173.4
Q ss_pred CcceeEEE--eCCEEEEEecCCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCccEEEEEeeCC-CcEEc
Q psy9060 62 TKHFKEKA--VGDVLVVTLDSPGVKV-------------NSLNSEVMSEIQSILRRIQS-DSSIRSAVIISGKP-GCFIA 124 (366)
Q Consensus 62 ~~~i~~~~--~~~Va~Itlnrp~~~~-------------Nal~~~~~~eL~~al~~~~~-d~~v~~vVl~~g~g-~~F~a 124 (366)
++++.++. +++|++||||||+ +. |+||.+|+.+|.++++.++. |++||+|| ++|.| ++||+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~-~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vV-ltg~G~~~F~a 336 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPT-AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWV-LKTEGDAAAVL 336 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcc-cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEE-EEcCCCCcEEe
Confidence 44455544 5899999999998 56 79999999999999999986 79999755 57777 49999
Q ss_pred CCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec-cccchhH-HHHHhhccEEEEe-------cCCccCCCc
Q psy9060 125 GADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS-GSCLGGG-LEVALACHYRIAV-------KDKKTGLGL 195 (366)
Q Consensus 125 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~-G~a~GgG-~elalacD~ria~-------~~ak~~~~~ 195 (366)
|+||+.+.. .+...........+.++.+|.++||||||+|| |+|+||| ++|+|+||+|||+ +++
T Consensus 337 G~Dl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a------ 409 (550)
T PRK08184 337 AADATLLAH-KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAP------ 409 (550)
T ss_pred CCChhhhcc-cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCC------
Confidence 999874321 11111122334456688899999999999997 9999999 9999999999999 555
Q ss_pred hhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhh-cCHHHHHHH--HhcCCCcCHHHHHHcCCcceecCCCC
Q psy9060 196 PEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL-TALPNVLDM--TLTGKTLKADKAKKMGIVDQLVEPLG 272 (366)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~-~G~~~a~~l--~ltG~~~~a~eA~~~GLVd~vv~~~~ 272 (366)
+|++||+++|++|++|++++|+++ +|..+|+++ +++|++++|+||+++||||+|+|+
T Consensus 410 ------------------~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-- 469 (550)
T PRK08184 410 ------------------AITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-- 469 (550)
T ss_pred ------------------EEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh--
Confidence 999999999999999999999998 699999997 589999999999999999999997
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCcc-cccccC
Q psy9060 273 PGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRIK 308 (366)
Q Consensus 273 ~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-~~~~~~ 308 (366)
+++++.+.+++++|++.++ .+...|
T Consensus 470 -----------~~l~~~a~~~a~~ia~~~p~a~~~~K 495 (550)
T PRK08184 470 -----------IDWEDEVRIALEERASLSPDALTGME 495 (550)
T ss_pred -----------HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6789999999999998864 344445
No 83
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=5.1e-37 Score=277.09 Aligned_cols=193 Identities=40% Similarity=0.675 Sum_probs=174.9
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH-HHHHH
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD-QVKQI 143 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 143 (366)
+.++++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++++| ++|.++.||+|.|++++....... ....+
T Consensus 1 i~~~~~~~i~~i~l~~~~-~~N~~~~~~~~~l~~~l~~~~~d~~~~~vv-l~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPE-KRNALSLEMLDELAAALDEAEADPDVRVVV-LTGAGKAFCAGADLKELAALSDAGEEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCcc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCceEeCcCHHHHhcccccchhHHHH
Confidence 356778899999999998 789999999999999999999999999755 467799999999999987644322 25567
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060 144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG 223 (366)
Q Consensus 144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G 223 (366)
.+.+++++..+.+++||+|++|||+|.|+|++++++||+||+++++ +|++||+++|
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~------------------------~~~~pe~~~G 134 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDA------------------------KFGLPEVKLG 134 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCC------------------------EEechhhhcC
Confidence 7788999999999999999999999999999999999999999986 9999999999
Q ss_pred CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060 224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 296 (366)
Q Consensus 224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~ 296 (366)
++|++|++.+|++++|...+.+++++|+.++++||+++||||++++. +++.+.+.+++++
T Consensus 135 ~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-------------~~l~~~a~~~a~~ 194 (195)
T cd06558 135 LVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPD-------------EELLAAALELARR 194 (195)
T ss_pred CCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCh-------------hHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999986 6788888888765
No 84
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=4e-37 Score=315.68 Aligned_cols=208 Identities=30% Similarity=0.483 Sum_probs=174.8
Q ss_pred cCCcceeEEEeCCEEEEEecCCC---------CCCCCCCHHHHHHHHHHHHHhh-cCCCccEEEEEeeCCCcEEcCCCcc
Q psy9060 60 NSTKHFKEKAVGDVLVVTLDSPG---------VKVNSLNSEVMSEIQSILRRIQ-SDSSIRSAVIISGKPGCFIAGADIS 129 (366)
Q Consensus 60 ~~~~~i~~~~~~~Va~Itlnrp~---------~~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~~g~g~~F~aG~Dl~ 129 (366)
..++++.++++++|++|+||||+ .+.|++|.+|+++|.++++.++ .|+++|+|||+++.|+.||+|+|++
T Consensus 8 ~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~ 87 (546)
T TIGR03222 8 SQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIF 87 (546)
T ss_pred CCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHH
Confidence 34678899999999999999974 2689999999999999999999 7899997665434468999999999
Q ss_pred hhhhcCCHH--HHHHHH-HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhh
Q psy9060 130 MLAACKTAD--QVKQIS-KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRI 206 (366)
Q Consensus 130 ~~~~~~~~~--~~~~~~-~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~ 206 (366)
++....... ...... .....+...+.++||||||+|||+|+|||++|+++||+||+++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a--------------- 152 (546)
T TIGR03222 88 MLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSS--------------- 152 (546)
T ss_pred HHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCc---------------
Confidence 875421111 111111 11234556678899999999999999999999999999999987444
Q ss_pred hcccccccccccchh-ccCCCChhHHhHHh--hhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhH
Q psy9060 207 VVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTM 283 (366)
Q Consensus 207 ~~~~~~~~~~~pe~~-~Gl~p~~gg~~~l~--r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~ 283 (366)
+|++||++ +|++|++|++++++ +++|..+|++|+++|+.++++||++|||||+|||+
T Consensus 153 -------~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~------------- 212 (546)
T TIGR03222 153 -------SVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP------------- 212 (546)
T ss_pred -------EEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeCh-------------
Confidence 89999997 99999999999997 79999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q psy9060 284 EYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 284 ~~l~~~a~~~a~~la~~~~ 302 (366)
+++.+.+.+++++|++.+.
T Consensus 213 ~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 213 SQFDAAIAERAAELAAQSD 231 (546)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 6789999999999998754
No 85
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.1e-36 Score=302.70 Aligned_cols=182 Identities=19% Similarity=0.309 Sum_probs=163.1
Q ss_pred CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC---CHH
Q psy9060 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK---TAD 138 (366)
Q Consensus 62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~---~~~ 138 (366)
.+.+.++..+++++|+||||+ +.|+||.+|+.+|.++++.++.|++|++| |++|.|++||+|+|++++.... ...
T Consensus 41 ~~~v~~e~~~~~~~ItLNRP~-~lNALs~~m~~eL~~al~~~~~D~~vrvV-VL~G~GkaFcAGgDl~~l~~~~~~~~~~ 118 (407)
T PLN02851 41 QDQVLVEGRAKSRAAILNRPS-SLNALTIPMVARLKRLYESWEENPDIGFV-LMKGSGRAFCSGADVVSLYHLINEGNVE 118 (407)
T ss_pred CCCeEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEE-EEECCCCCccCCcCHHHHHhhccccchH
Confidence 456788889999999999999 89999999999999999999999999965 5588899999999999886421 122
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060 139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218 (366)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p 218 (366)
....+.....++...|.++|||+||+|||.|+|||++|+++||+||+++++ +|++|
T Consensus 119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a------------------------~famP 174 (407)
T PLN02851 119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKT------------------------VFAHP 174 (407)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCc------------------------eEecc
Confidence 334455566777888999999999999999999999999999999999976 99999
Q ss_pred chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
|+++|++|+.|++++|+|+.|.. +++|++||+++++++|+++||+|+++|+
T Consensus 175 E~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~v~~ 225 (407)
T PLN02851 175 EVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHYCLN 225 (407)
T ss_pred hhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceeecCH
Confidence 99999999999999999999975 9999999999999999999999999987
No 86
>KOG1681|consensus
Probab=100.00 E-value=2.5e-37 Score=277.20 Aligned_cols=210 Identities=29% Similarity=0.466 Sum_probs=183.6
Q ss_pred CCcceeEEE---eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---
Q psy9060 61 STKHFKEKA---VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--- 134 (366)
Q Consensus 61 ~~~~i~~~~---~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--- 134 (366)
.++...+.+ +.-|..+.||||. +.|++|..|+.|+.++++.+..||++|+ ||++|.|+.||+|+|++.+...
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPs-k~Nal~~~~w~E~~~cf~~l~~dpdcr~-iilsg~GKhFcaGIDl~~~~~~~~~ 94 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPS-KLNALNKVFWREFKECFDSLDRDPDCRA-IILSGAGKHFCAGIDLNDMASDRIL 94 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcc-hhhhhhHHHHHHHHHHHHhhccCCCceE-EEEecCCcceecccCcchhhhhhcc
Confidence 355444443 4569999999998 8999999999999999999999999996 5569999999999998766432
Q ss_pred ---CC-----HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhh
Q psy9060 135 ---KT-----ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRI 206 (366)
Q Consensus 135 ---~~-----~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~ 206 (366)
.+ ...++.++..+++.+..|++||||+|++|||+|+|||+.|.-|||+|++++++
T Consensus 95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDA----------------- 157 (292)
T KOG1681|consen 95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDA----------------- 157 (292)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccc-----------------
Confidence 01 12345566778899999999999999999999999999999999999999998
Q ss_pred hcccccccccccchhccCCCChhHHhHHhhhcC-HHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHH
Q psy9060 207 VVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA-LPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEY 285 (366)
Q Consensus 207 ~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G-~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~ 285 (366)
.|..-|+.+|+..+.|..+|||..+| ...++++.+|++.|+|.||++.|||.+|+|+ .+.
T Consensus 158 -------ffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~d------------k~~ 218 (292)
T KOG1681|consen 158 -------FFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPD------------KEE 218 (292)
T ss_pred -------eeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCC------------HHH
Confidence 99999999999999999999999999 7899999999999999999999999999987 378
Q ss_pred HHHHHHHHHHHHhcCc-ccccccC
Q psy9060 286 LEEVAVNTASQLASGK-LKINRIK 308 (366)
Q Consensus 286 l~~~a~~~a~~la~~~-~~~~~~~ 308 (366)
|+..+..+|..|+.++ ..+..+|
T Consensus 219 ll~~~l~mA~~Ia~KSpvaVqgTK 242 (292)
T KOG1681|consen 219 LLNGALPMAELIASKSPVAVQGTK 242 (292)
T ss_pred HHhhhHHHHHHhccCCceeeechH
Confidence 9999999999999885 4454454
No 87
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.1e-36 Score=311.17 Aligned_cols=207 Identities=29% Similarity=0.466 Sum_probs=174.3
Q ss_pred cCCcceeEEEeCCEEEEEecCCC---------CCCCCCCHHHHHHHHHHHHHhh-cCCCccEEEEEeeC-CCcEEcCCCc
Q psy9060 60 NSTKHFKEKAVGDVLVVTLDSPG---------VKVNSLNSEVMSEIQSILRRIQ-SDSSIRSAVIISGK-PGCFIAGADI 128 (366)
Q Consensus 60 ~~~~~i~~~~~~~Va~Itlnrp~---------~~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~~g~-g~~F~aG~Dl 128 (366)
..++++.++++++|++|+||||+ .+.|++|.+|+.+|.++++.++ +|++|++||| +|. ++.||+|+|+
T Consensus 12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVL-tg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVV-TSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEE-ecCCCCCCCCccCH
Confidence 45788999999999999999763 1579999999999999999999 7899997665 564 5899999999
Q ss_pred chhhhcCCHHH--HHHHH-HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhh
Q psy9060 129 SMLAACKTADQ--VKQIS-KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYR 205 (366)
Q Consensus 129 ~~~~~~~~~~~--~~~~~-~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~ 205 (366)
+++........ ..... .....+...+.++||||||+|||+|+|||++|+++|||||+++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a-------------- 156 (550)
T PRK08184 91 FMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSS-------------- 156 (550)
T ss_pred HhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCc--------------
Confidence 98754221111 11111 11122455778899999999999999999999999999999987545
Q ss_pred hhcccccccccccchh-ccCCCChhHHhHHh--hhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhh
Q psy9060 206 IVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERT 282 (366)
Q Consensus 206 ~~~~~~~~~~~~pe~~-~Gl~p~~gg~~~l~--r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~ 282 (366)
+|++||++ +|++|++|++++++ +++|..+|++|+++|+.++++||+++||||+++|+
T Consensus 157 --------~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~------------ 216 (550)
T PRK08184 157 --------AVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKP------------ 216 (550)
T ss_pred --------EEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH------------
Confidence 89999997 99999999999998 78999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHhcCcc
Q psy9060 283 MEYLEEVAVNTASQLASGKL 302 (366)
Q Consensus 283 ~~~l~~~a~~~a~~la~~~~ 302 (366)
+++.+.+.+++++|+..+.
T Consensus 217 -d~l~~~a~~~A~~ia~~~~ 235 (550)
T PRK08184 217 -SKFDAKVAERAAELAAASD 235 (550)
T ss_pred -HHHHHHHHHHHHHHHhCCC
Confidence 6789999999999998754
No 88
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-33 Score=251.17 Aligned_cols=203 Identities=18% Similarity=0.353 Sum_probs=176.3
Q ss_pred cCCcceeEEEe-CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEee---CCCcEEcCCCcchhhhc-
Q psy9060 60 NSTKHFKEKAV-GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG---KPGCFIAGADISMLAAC- 134 (366)
Q Consensus 60 ~~~~~i~~~~~-~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g---~g~~F~aG~Dl~~~~~~- 134 (366)
..++.|.|++. ++|+.|++|||+ .+|++.+..+.||.+++..+..|++|.+ ||+|| ++.+||+|+|-+-....
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPe-vrNAfrP~TV~Em~~Af~~Ar~d~~vGv-i~lTG~~~G~~AFCsGGDQ~vRg~~~ 92 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPE-VRNAFRPKTVDEMIDAFADARDDPNVGV-ILLTGNGDGDKAFCSGGDQKVRGDSG 92 (282)
T ss_pred CCcceeEEeeccCceEEEEecChh-hhccCCCccHHHHHHHHHhhhcCCCccE-EEEecCCCCCeeeecCCCceecccCC
Confidence 35788999997 999999999999 7999999999999999999999999985 55676 45789999997654331
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccc
Q psy9060 135 --KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKK 212 (366)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
.+++.... -...++-+.|+.+||||||.|+|+++|||-.|-+.||+.||++++
T Consensus 93 gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA----------------------- 147 (282)
T COG0447 93 GYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNA----------------------- 147 (282)
T ss_pred CccCCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcc-----------------------
Confidence 11111111 123455667889999999999999999999999999999999987
Q ss_pred ccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHH
Q psy9060 213 TGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292 (366)
Q Consensus 213 ~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~ 292 (366)
+|+..-.++|.+-++.|+..|.|.+|..+|+|+.+.++.++|+||+++||||.|||. ++|+++..+
T Consensus 148 -~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-------------~~LE~e~v~ 213 (282)
T COG0447 148 -IFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPH-------------ADLEKETVQ 213 (282)
T ss_pred -hhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccH-------------HHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999997 789999999
Q ss_pred HHHHHhcCccc
Q psy9060 293 TASQLASGKLK 303 (366)
Q Consensus 293 ~a~~la~~~~~ 303 (366)
|++++..+++.
T Consensus 214 W~~E~l~kSP~ 224 (282)
T COG0447 214 WAREMLAKSPT 224 (282)
T ss_pred HHHHHHhcChH
Confidence 99998877543
No 89
>KOG0016|consensus
Probab=99.98 E-value=2.7e-31 Score=243.22 Aligned_cols=204 Identities=24% Similarity=0.348 Sum_probs=179.1
Q ss_pred CCcceeEEEeCCEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH--
Q psy9060 61 STKHFKEKAVGDVLVVTLD-SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA-- 137 (366)
Q Consensus 61 ~~~~i~~~~~~~Va~Itln-rp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~-- 137 (366)
.+..+.+++++++.+|.+| ||. +.|+++.+++.++..+++.+..|+++. +++++|.|+.||+|.|++.+....+.
T Consensus 5 ~~~~~vv~~~~g~~~I~~~~~Pk-k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 5 RYREIVVTRENGPFFIALNIRPK-KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred cccceEEEecCCcEEEEecCCCc-ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCCCcc
Confidence 4567888899999999999 998 899999999999999999999999885 67789999999999999988654321
Q ss_pred -HHHH---HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccc
Q psy9060 138 -DQVK---QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKT 213 (366)
Q Consensus 138 -~~~~---~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~ 213 (366)
.... .....+..+.+.+.++|||+||.|||+++|-|..+.-.||+++|+|.+
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka------------------------ 138 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKA------------------------ 138 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccce------------------------
Confidence 1111 222333447888899999999999999999999999999999999876
Q ss_pred cccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHH
Q psy9060 214 GLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 293 (366)
Q Consensus 214 ~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~ 293 (366)
+|..|+.++|+.|.+++++.+|+++|...|.||++.|++++|+||.+.|||++++++ +.+.+.+..-
T Consensus 139 ~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~-------------~tf~~~v~~~ 205 (266)
T KOG0016|consen 139 WFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPA-------------ETFNEEVLKK 205 (266)
T ss_pred EEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcCh-------------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 6788888888
Q ss_pred HHHHhcCccc
Q psy9060 294 ASQLASGKLK 303 (366)
Q Consensus 294 a~~la~~~~~ 303 (366)
+++++..++.
T Consensus 206 ikq~s~l~p~ 215 (266)
T KOG0016|consen 206 IKQYSKLSPE 215 (266)
T ss_pred HHHHhcCCHH
Confidence 8888876543
No 90
>KOG1682|consensus
Probab=99.96 E-value=6.7e-29 Score=219.58 Aligned_cols=201 Identities=21% Similarity=0.346 Sum_probs=177.9
Q ss_pred ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060 64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI 143 (366)
Q Consensus 64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 143 (366)
...++.+++|-.|+|++|. ++|.++.+|+.+|.+.+.....+.++|+| |++..|+.||+|.||+++......+...+.
T Consensus 33 ~g~~~~~~gvR~i~l~npK-k~NtLSLaM~~~Lq~~ll~d~d~~dlr~v-iita~GkifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 33 LGLVKEHNGVREITLNNPK-KLNTLSLAMMCALQDALLKDKDNLDLRCV-IITAQGKIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred ccccccccceeeeeecCcc-ccchhhHHHHHHHHHHHhhcccccceeEE-EEecCCccccccccHHHhhcCccchHHHHH
Confidence 3445556899999999999 89999999999999999999888999975 558999999999999999876555566677
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060 144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG 223 (366)
Q Consensus 144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G 223 (366)
+....+++..|+++|.|+|+-|||.+..+|+.|...||++||++++ +|..|.+.+|
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~S------------------------kF~tPG~~vG 166 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNS------------------------KFSTPGAGVG 166 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCc------------------------cccCCCCcee
Confidence 7888899999999999999999999999999999999999999987 8999999999
Q ss_pred CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060 224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 303 (366)
Q Consensus 224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~ 303 (366)
++-...| .-|.|.+....+.+|++||.+++++||+..|||.++||. ++|..++.+.+++|...+..
T Consensus 167 lFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~-------------~el~~e~~~i~~~i~~~sra 232 (287)
T KOG1682|consen 167 LFCSTPG-VALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPA-------------EELDKEIEEITNAIKAKSRA 232 (287)
T ss_pred eEecCcc-hhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCH-------------HHHHHHHHHHHHHHhhhHHH
Confidence 9765544 367888999999999999999999999999999999997 78888899999888776554
Q ss_pred c
Q psy9060 304 I 304 (366)
Q Consensus 304 ~ 304 (366)
+
T Consensus 233 v 233 (287)
T KOG1682|consen 233 V 233 (287)
T ss_pred H
Confidence 3
No 91
>KOG1684|consensus
Probab=99.94 E-value=4.3e-26 Score=217.01 Aligned_cols=182 Identities=26% Similarity=0.398 Sum_probs=163.0
Q ss_pred cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhh---cCCHHH
Q psy9060 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA---CKTADQ 139 (366)
Q Consensus 63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~---~~~~~~ 139 (366)
..|.++..+...+||||||. ..|++|.+|...+...+...+.++.+++||+-++.+++||+|+|++.... ....+.
T Consensus 38 ~~VL~e~~~~~r~itLNRPK-aLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEGKGCARVITLNRPK-ALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEecCCceeEEEecCch-hhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 56888888999999999999 79999999999999999999999999976665455899999999985543 233345
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060 140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219 (366)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 219 (366)
...++.....+...|.+..||.||.++|..+|||+.|+...-||||+++. .|.+||
T Consensus 117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT------------------------~~AmPE 172 (401)
T KOG1684|consen 117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERT------------------------VFAMPE 172 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccc------------------------eecccc
Confidence 66677777788888999999999999999999999999999999999965 999999
Q ss_pred hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
..+|++|+.|++++++|+-| ....++-+||+++++.+|+..||.++-|+.
T Consensus 173 t~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S 222 (401)
T KOG1684|consen 173 TGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPS 222 (401)
T ss_pred cccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccch
Confidence 99999999999999999988 778889999999999999999999999987
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.78 E-value=3.8e-18 Score=153.99 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=114.3
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHH
Q psy9060 74 LVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSE 153 (366)
Q Consensus 74 a~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (366)
++|.++. .++......+.+.++.+.+|+ ++.++|.-.+++ +++. ....++..
T Consensus 2 ~vv~i~g------~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSpG-----G~v~----------------~~~~i~~~ 53 (187)
T cd07020 2 YVLEING------AITPATADYLERAIDQAEEGG-ADALIIELDTPG-----GLLD----------------STREIVQA 53 (187)
T ss_pred EEEEEee------EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECCC-----CCHH----------------HHHHHHHH
Confidence 5666753 356667788999999998765 677666534332 2221 12355667
Q ss_pred HHcCCCCEEEEec---cccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh--
Q psy9060 154 IESSPKPIVAAIS---GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA-- 228 (366)
Q Consensus 154 i~~~~kP~Iaav~---G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~-- 228 (366)
|..+|||||++|+ |+|.|||+.++++||++|+++++ +|+.+++..+..+..
T Consensus 54 l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a------------------------~~g~~~~~~~~~~~~~~ 109 (187)
T cd07020 54 ILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGT------------------------NIGAAHPVAIGGGGGSD 109 (187)
T ss_pred HHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCC------------------------cEEeccccccCCCCcch
Confidence 7889999999999 99999999999999999999987 899999885544432
Q ss_pred ------------hHHhHHhhhcCH--HHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 229 ------------GGTQRLPKLTAL--PNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 229 ------------gg~~~l~r~~G~--~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+....+++..|. .++.+++++|+.|+++||+++||||+++++
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~ 165 (187)
T cd07020 110 PVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAAD 165 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCC
Confidence 245578888997 689999999999999999999999999987
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.77 E-value=2.6e-18 Score=153.65 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060 92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG 171 (366)
Q Consensus 92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G 171 (366)
...+|.++++.+.+|++|++||| ++ +|.|.|+... ..+.+++..+.+++|||||+|+|.|.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl-~~----~~~gg~~~~~-------------~~~~~~i~~~~~~~kpVia~v~G~a~g 84 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVL-RV----NSPGGSVTAS-------------EVIRAELAAARAAGKPVVASGGGNAAS 84 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE-Ee----eCCCcCHHHH-------------HHHHHHHHHHHhCCCCEEEEECCchhH
Confidence 46799999999999999998766 44 6888886532 123456778888999999999999999
Q ss_pred hHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh--------HHhhhcC--HH
Q psy9060 172 GGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ--------RLPKLTA--LP 241 (366)
Q Consensus 172 gG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~--------~l~r~~G--~~ 241 (366)
+|+.|+++||++++++++ +|+++.+..+..+...... .+++..| ..
T Consensus 85 ~g~~la~a~D~i~a~~~a------------------------~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~ 140 (177)
T cd07014 85 GGYWISTPANYIVANPST------------------------LVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPE 140 (177)
T ss_pred HHHHHHHhCCEEEECCCC------------------------eEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999987 7888877665322211111 3444445 77
Q ss_pred HHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 242 NVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 242 ~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
...+++..|+.++++||++.||||++.+.
T Consensus 141 ~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 141 QQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred HhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 88899999999999999999999999975
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.59 E-value=4.2e-15 Score=136.62 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecccc
Q psy9060 90 SEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSC 169 (366)
Q Consensus 90 ~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a 169 (366)
...+.+|.++|+.+.+|++|+++|| + .||.|+|+..+. .+.+.+..+..++||+||+++|.|
T Consensus 20 ~~~~~~l~~~l~~a~~d~~v~~ivL-~----~~s~Gg~~~~~~-------------~~~~~l~~~~~~~kpVia~v~g~a 81 (211)
T cd07019 20 NVGGDTTAAQIRDARLDPKVKAIVL-R----VNSPGGSVTASE-------------VIRAELAAARAAGKPVVVSAGGAA 81 (211)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEE-E----EcCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCee
Confidence 3457999999999999999998776 3 799999986542 223456778889999999999999
Q ss_pred chhHHHHHhhccEEEEecCCcc
Q psy9060 170 LGGGLEVALACHYRIAVKDKKT 191 (366)
Q Consensus 170 ~GgG~elalacD~ria~~~ak~ 191 (366)
.|+|+.|+++||.+++++++..
T Consensus 82 ~s~gy~la~~aD~i~a~~~a~~ 103 (211)
T cd07019 82 ASGGYWISTPANYIVANPSTLT 103 (211)
T ss_pred hhHHHHHHHhCCEEEEcCCCEE
Confidence 9999999999999999998744
No 95
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.55 E-value=1e-14 Score=152.37 Aligned_cols=182 Identities=21% Similarity=0.300 Sum_probs=127.3
Q ss_pred EeCCEEEEEecCCCC-CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC--CCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060 69 AVGDVLVVTLDSPGV-KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK--PGCFIAGADISMLAACKTADQVKQISK 145 (366)
Q Consensus 69 ~~~~Va~Itlnrp~~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~--g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 145 (366)
.+++|++|.++.+=. ..|..+....+.+.+.++.+.+|++|++||+.-.+ |..|++ +
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as--------------------e 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS--------------------E 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH--------------------H
Confidence 357899999986531 12333333456788899999999999998876322 222332 1
Q ss_pred HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccC-CCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060 146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG-LGLPEVALACHYRIVVKDKKTGLGLPEVMLGL 224 (366)
Q Consensus 146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl 224 (366)
.+.+.+.++...+||||+.++|.|.+||+.++++||.++|++.+.+| +|+.-..+ .+.-.-.++|+
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~-------------~~~~~l~klGi 432 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLP-------------TFENSLDRIGV 432 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEcc-------------CHHHHHHhcCC
Confidence 22345555677889999999999999999999999999999987554 33211110 01111157888
Q ss_pred CCChhHHhHHhh----------------------------hcCHHH-----HHHHHhcCCCcCHHHHHHcCCcceecCCC
Q psy9060 225 LPGAGGTQRLPK----------------------------LTALPN-----VLDMTLTGKTLKADKAKKMGIVDQLVEPL 271 (366)
Q Consensus 225 ~p~~gg~~~l~r----------------------------~~G~~~-----a~~l~ltG~~~~a~eA~~~GLVd~vv~~~ 271 (366)
.|....+..+.. .++..+ +.+.+.+|+.++++||+++||||++-.
T Consensus 433 ~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~-- 510 (584)
T TIGR00705 433 HVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG-- 510 (584)
T ss_pred ceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC--
Confidence 887666655443 555555 778899999999999999999999953
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060 272 GPGLNHPEERTMEYLEEVAVNTASQLASG 300 (366)
Q Consensus 272 ~~~~~~~~~~~~~~l~~~a~~~a~~la~~ 300 (366)
+ +.|.+.|++++..
T Consensus 511 --------------~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 511 --------------L-DEAVAKAAKLAHC 524 (584)
T ss_pred --------------H-HHHHHHHHHHcCC
Confidence 2 5567777787776
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.48 E-value=4.2e-13 Score=117.80 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G 167 (366)
+++.+.++|.+.++.++.|++++++||. . .|.|+|+.. +..+...+..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~-~----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLE-V----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEE-E----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence 4557789999999999999999987763 2 456665432 234566677788999999999
Q ss_pred ccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH-------------hHH
Q psy9060 168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-------------QRL 234 (366)
Q Consensus 168 ~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-------------~~l 234 (366)
.|.++|+.|+++||.|++.+++ .|++..+..+.....+-. ..+
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a------------------------~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGT------------------------RVGSHGPIGGYGGNGNPTAQEADQRIILYFIARF 122 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCC------------------------EEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 677766654433211000 111
Q ss_pred h------hhcCHHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060 235 P------KLTALPNVLDMTLTGKTLKADKAKKMGIVDQL 267 (366)
Q Consensus 235 ~------r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~v 267 (366)
. |.+......+++..|..++++||+++||||++
T Consensus 123 ~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 123 ISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 1 11233446678889999999999999999985
No 97
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.47 E-value=2.1e-13 Score=119.86 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Q psy9060 91 EVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCL 170 (366)
Q Consensus 91 ~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~ 170 (366)
.+...+.+.++.+..+..+. +.+...|+... ....+.+.|..++||+|+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i~--l~inspGG~~~----------------------~~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDIT--VRINSPGGDVF----------------------AGLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCEE--EEEECCCCCHH----------------------HHHHHHHHHHhcCCCEEEEEcchHH
Confidence 35678888888888775443 33344443221 1245677788899999999999999
Q ss_pred hhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhH---------------HhHHh
Q psy9060 171 GGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG---------------TQRLP 235 (366)
Q Consensus 171 GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg---------------~~~l~ 235 (366)
|+|+.++++||+|++++++ .|++.....|..+.... ...+.
T Consensus 71 s~g~~ia~a~d~~~~~~~a------------------------~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 126 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNA------------------------MLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYA 126 (160)
T ss_pred hHHHHHHhcCCeEEECCCc------------------------EEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 78887766555443322 23367
Q ss_pred hhcC--HHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060 236 KLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQL 267 (366)
Q Consensus 236 r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~v 267 (366)
+..| .....+++..+..++++||+++||||+|
T Consensus 127 ~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 127 EKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 7788 6677778888888999999999999986
No 98
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.44 E-value=1.4e-12 Score=120.06 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=66.5
Q ss_pred CCC-CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060 85 VNS-LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA 163 (366)
Q Consensus 85 ~Na-l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia 163 (366)
.|. ++..++.+|.++++.+.+|++|++||+. . +|.|.++... ..+.+.+..+.. +|||||
T Consensus 18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~-~----~s~gg~~~~~-------------~~l~~~l~~~~~-~KpViA 78 (214)
T cd07022 18 LEASSGLTSYEGIAAAIRAALADPDVRAIVLD-I----DSPGGEVAGV-------------FELADAIRAARA-GKPIVA 78 (214)
T ss_pred ccCCCCcccHHHHHHHHHHHhhCCCCcEEEEE-E----eCCCCcHHHH-------------HHHHHHHHHHhc-CCCEEE
Confidence 454 4567899999999999999999987763 2 4455554221 122333444444 699999
Q ss_pred EeccccchhHHHHHhhccEEEEecCCcc
Q psy9060 164 AISGSCLGGGLEVALACHYRIAVKDKKT 191 (366)
Q Consensus 164 av~G~a~GgG~elalacD~ria~~~ak~ 191 (366)
+++|.|.|+|+.++++||++++++++..
T Consensus 79 ~v~g~a~s~gy~lA~~aD~i~a~~~a~~ 106 (214)
T cd07022 79 FVNGLAASAAYWIASAADRIVVTPTAGV 106 (214)
T ss_pred EECCchhhHHHHHHhcCCEEEEcCCCeE
Confidence 9999999999999999999999998754
No 99
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.41 E-value=2.5e-12 Score=117.81 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=75.5
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS 152 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
|++|.++.+=.+ . ...+..+|.++++.+..|++++++|+ .+ +|.|+|+... ..+.+.+.
T Consensus 2 v~vi~i~g~i~~-~--~~~~~~~l~~~l~~a~~d~~i~~ivl-~~----~s~Gg~~~~~-------------~~i~~~i~ 60 (208)
T cd07023 2 IAVIDIEGTISD-G--GGIGADSLIEQLRKAREDDSVKAVVL-RI----NSPGGSVVAS-------------EEIYREIR 60 (208)
T ss_pred EEEEEEEEEEcC-C--CCCCHHHHHHHHHHHHhCCCCcEEEE-EE----ECCCCCHHHH-------------HHHHHHHH
Confidence 566766543100 0 25688999999999999999998766 44 4778887541 12345667
Q ss_pred HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCcc
Q psy9060 153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191 (366)
Q Consensus 153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~ 191 (366)
.+..++||+||+++|.|.|+|+.++++||++++++++..
T Consensus 61 ~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~ 99 (208)
T cd07023 61 RLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTIT 99 (208)
T ss_pred HHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeE
Confidence 788899999999999999999999999999999998743
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.29 E-value=5.3e-11 Score=109.11 Aligned_cols=91 Identities=20% Similarity=0.345 Sum_probs=68.6
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS 152 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
|++|+++.+= . ....+|.++|+.+.+|++++++||. . .|.|+|+.. ..++..
T Consensus 2 v~vi~i~g~i---~----~s~~~l~~~l~~a~~d~~i~~vvl~-~----~s~Gg~~~~----------------~~~l~~ 53 (207)
T TIGR00706 2 IAILPVSGAI---A----VSPEDFDKKIKRIKDDKSIKALLLR-I----NSPGGTVVA----------------SEEIYE 53 (207)
T ss_pred EEEEEEEEEE---e----cCHHHHHHHHHHHhhCCCccEEEEE-e----cCCCCCHHH----------------HHHHHH
Confidence 6777776532 1 2357899999999999999987764 3 256666532 133445
Q ss_pred HHHcCC--CCEEEEeccccchhHHHHHhhccEEEEecCCcc
Q psy9060 153 EIESSP--KPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191 (366)
Q Consensus 153 ~i~~~~--kP~Iaav~G~a~GgG~elalacD~ria~~~ak~ 191 (366)
.|.+++ ||+|+.++|.|.|+|+.++++||.+++++++..
T Consensus 54 ~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~v 94 (207)
T TIGR00706 54 KLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTIT 94 (207)
T ss_pred HHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeE
Confidence 555665 999999999999999999999999999998743
No 101
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.21 E-value=3.8e-10 Score=101.10 Aligned_cols=141 Identities=21% Similarity=0.319 Sum_probs=98.1
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHH
Q psy9060 74 LVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSE 153 (366)
Q Consensus 74 a~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (366)
.+|.++. .+++...+.+.++|+.+.+++ ++.+|+.--.+ |+++ .....+...
T Consensus 2 ~vi~i~g------~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v----------------~~~~~I~~~ 53 (178)
T cd07021 2 YVIPIEG------EIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRV----------------DSALEIVDL 53 (178)
T ss_pred EEEEEee------EECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCH----------------HHHHHHHHH
Confidence 4566643 356677888999999998886 66665543222 2221 123567788
Q ss_pred HHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH--
Q psy9060 154 IESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-- 231 (366)
Q Consensus 154 i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-- 231 (366)
|.++++|+|+.|+|.|.++|+.++++||++++++++ .||.+.+ ++..|+.
T Consensus 54 l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a------------------------~iG~~~~----v~~~~~~~~ 105 (178)
T cd07021 54 ILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGA------------------------TIGAAEP----IPGDGNGAA 105 (178)
T ss_pred HHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCC------------------------eEecCee----EcCCCccch
Confidence 889999999999999999999999999999999887 6777643 3322220
Q ss_pred ------hH------Hhhhc--CHHHHHHHHhcC-------------CCcCHHHHHHcCCcceecCC
Q psy9060 232 ------QR------LPKLT--ALPNVLDMTLTG-------------KTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 232 ------~~------l~r~~--G~~~a~~l~ltG-------------~~~~a~eA~~~GLVd~vv~~ 270 (366)
.. +...- ....+..|+... -.++++||++.|++|.+.++
T Consensus 106 ~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 106 DEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 01 11111 233445566654 37999999999999999976
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.16 E-value=1.5e-10 Score=107.33 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccc
Q psy9060 89 NSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGS 168 (366)
Q Consensus 89 ~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~ 168 (366)
+...+.++.+.|+++..|++|++||+ ...+..| ++.++.++ .+.+..+...+|||||.++|
T Consensus 27 ~~~~~~~l~~~l~~a~~d~~ik~vvL-~~~s~gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~~- 87 (222)
T cd07018 27 SELSLRDLLEALEKAAEDDRIKGIVL-DLDGLSG-GLAKLEEL----------------RQALERFRASGKPVIAYADG- 87 (222)
T ss_pred CCccHHHHHHHHHHHhcCCCeEEEEE-ECCCCCC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeCC-
Confidence 44568899999999999999998766 5555555 54444332 34555666689999999998
Q ss_pred cchhHHHHHhhccEEEEecCCcc
Q psy9060 169 CLGGGLEVALACHYRIAVKDKKT 191 (366)
Q Consensus 169 a~GgG~elalacD~ria~~~ak~ 191 (366)
|.+||+.++++||.+++.+.+..
T Consensus 88 ~~sggy~lasaad~I~a~p~~~v 110 (222)
T cd07018 88 YSQGQYYLASAADEIYLNPSGSV 110 (222)
T ss_pred CCchhhhhhhhCCEEEECCCceE
Confidence 88999999999999999997744
No 103
>PRK10949 protease 4; Provisional
Probab=98.87 E-value=2e-08 Score=105.60 Aligned_cols=165 Identities=19% Similarity=0.296 Sum_probs=103.4
Q ss_pred eCCEEEEEecCC----CCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060 70 VGDVLVVTLDSP----GVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK 145 (366)
Q Consensus 70 ~~~Va~Itlnrp----~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 145 (366)
.+.|++|.++.. +...+.++. +.+.+.|+.+.+|++||+||+.-.+++. . .... +
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpGG-----s---------~~as----e 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPGG-----S---------VTAS----E 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCCC-----c---------HHHH----H
Confidence 467888876532 112233443 5778889999999999998876444331 0 0111 2
Q ss_pred HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccC-CCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060 146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG-LGLPEVALACHYRIVVKDKKTGLGLPEVMLGL 224 (366)
Q Consensus 146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl 224 (366)
.+.+.+.+++...||||+.+.|.|..||+.++.+||.++|.+.+-+| +|+.-..+ .+.-.--++|+
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~-------------~~~~ll~klGV 450 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVIN-------------TVENSLDSIGV 450 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEcc-------------CHHHHHHhcCC
Confidence 23344555666789999999999999999999999999999987666 55433322 11111112333
Q ss_pred CCChhHH-----------------hHHh-----------------hhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060 225 LPGAGGT-----------------QRLP-----------------KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269 (366)
Q Consensus 225 ~p~~gg~-----------------~~l~-----------------r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~ 269 (366)
-.....+ ..+. |-+..... +-+..|+.+++++|++.||||++-.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~ 528 (618)
T PRK10949 451 HTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred ceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCC
Confidence 2211111 1111 22233222 3467999999999999999999975
No 104
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.79 E-value=4.4e-09 Score=113.11 Aligned_cols=61 Identities=66% Similarity=1.108 Sum_probs=57.2
Q ss_pred CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhcccC
Q psy9060 1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61 (366)
Q Consensus 1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~~ 61 (366)
+++||||||++|+++|+.+...++++||+.|+++|.+|+.||++++|+|+||.++.+++..
T Consensus 267 ~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 267 QTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred hccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 4688999999999999999999999999999999999999999999999999999887653
No 105
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.71 E-value=4.6e-07 Score=80.71 Aligned_cols=138 Identities=16% Similarity=0.263 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 87 SLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 87 al~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
.+++.+.+.|.+.++.+++|+ ++.+++.-..+ |+++. ....+...|...++||++.|+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~~-~~~i~l~inSP-----GG~v~----------------~~~~I~~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQDN-AEAIIIELDTP-----GGRAD----------------AAGNIVQRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcCC-CCeEEEEEECC-----CCCHH----------------HHHHHHHHHHhcCcCEEEEEe
Confidence 366777888899999888764 67665543322 22221 123556667778999999999
Q ss_pred ---cccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCC----h---h-HHhH--
Q psy9060 167 ---GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG----A---G-GTQR-- 233 (366)
Q Consensus 167 ---G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~----~---g-g~~~-- 233 (366)
|.|.++|..++++||.+++.+++ .+|.-.+..|.-+. . - -...
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s------------------------~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~ 122 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGT------------------------SIGACRPILGYSQNGSIIEAPPKITNYFIA 122 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCC------------------------EEEEccccccCCCCCccccchHHHHHHHHH
Confidence 99999999999999999999987 45554442221110 0 0 0111
Q ss_pred ----HhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 234 ----LPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 234 ----l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+.+.-| ...+..++.....++++||++.|+||.+++.
T Consensus 123 ~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 123 YIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 112233 4566778888999999999999999999986
No 106
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.60 E-value=3.8e-08 Score=105.62 Aligned_cols=61 Identities=33% Similarity=0.572 Sum_probs=57.2
Q ss_pred CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhcccC
Q psy9060 1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61 (366)
Q Consensus 1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~~ 61 (366)
++++|||||++++++++++.+.++++||..|+++|.+|..||++++++++||.++++++..
T Consensus 243 ~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~ 303 (714)
T TIGR02437 243 VAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKA 303 (714)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCC
Confidence 3689999999999999999999999999999999999999999999999999999887653
No 107
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.58 E-value=7.9e-07 Score=78.47 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G 167 (366)
++..+.+++.+.|..++.++.++.++|.--++ |+++ .....+++.|..+++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSp-----GG~v----------------~~~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSP-----GGDV----------------FAGMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECC-----CCcH----------------HHHHHHHHHHHhcCCCceEEEEe
Confidence 45678889999999999887777665543222 2221 12346677777889999999999
Q ss_pred ccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh-------------
Q psy9060 168 SCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------- 232 (366)
Q Consensus 168 ~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------------- 232 (366)
.|.++|..++++|| .|++.+++ .+.+....-|......-..
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a------------------------~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~ 123 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNA------------------------MMMIHQPWGGTLGDATDMRIYADLLLKVEGNL 123 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCE------------------------EEEEccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 57777655 4443222111100000000
Q ss_pred --HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060 233 --RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQL 267 (366)
Q Consensus 233 --~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~v 267 (366)
.+.+..| .....+++-.+.-++++||+++||||++
T Consensus 124 ~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 124 VSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 0111122 3344456666777799999999999985
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.43 E-value=2.3e-06 Score=78.08 Aligned_cols=130 Identities=17% Similarity=0.245 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
++..+...+...+..++.++..+.+.+ +...|+ |. ..+..++..|...+.|+++.+.
T Consensus 40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG------~v----------------~~g~~I~d~i~~~~~~v~t~~~ 97 (200)
T PRK00277 40 VEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG------SV----------------TAGLAIYDTMQFIKPDVSTICI 97 (200)
T ss_pred ECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC------cH----------------HHHHHHHHHHHhcCCCEEEEEE
Confidence 567788888888888876543333333 233232 21 1234566677777889999999
Q ss_pred cccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH-------------
Q psy9060 167 GSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT------------- 231 (366)
Q Consensus 167 G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~------------- 231 (366)
|.|.++|..++++++ .|++.+++ ++++.+..+++
T Consensus 98 G~aaS~a~~I~~ag~~~~r~~~p~s-------------------------------~imih~p~~~~~G~a~di~~~a~~ 146 (200)
T PRK00277 98 GQAASMGAFLLAAGAKGKRFALPNS-------------------------------RIMIHQPLGGFQGQATDIEIHARE 146 (200)
T ss_pred eEeccHHHHHHhcCCCCCEEEcCCc-------------------------------eEEeccCcccccCChhHHHHHHHH
Confidence 999999999998743 45555544 44444322221
Q ss_pred ---------hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 232 ---------QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 232 ---------~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
..+....| .....+++-.+.-++|+||++.||||+|+..
T Consensus 147 l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 147 ILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 11222233 3444566667788999999999999999975
No 109
>KOG1683|consensus
Probab=98.38 E-value=1.8e-07 Score=90.99 Aligned_cols=172 Identities=16% Similarity=0.107 Sum_probs=132.8
Q ss_pred CEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHH
Q psy9060 72 DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQIL 151 (366)
Q Consensus 72 ~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (366)
++..++++ |+ .|..|.++..++..-++.+..+..+++....+-..+.|++|.|..+..-.. ........-.+++++
T Consensus 66 ~~~~~dmv-ie--av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~-h~fspa~~m~LlEii 141 (380)
T KOG1683|consen 66 GFANADMV-IE--AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGM-HFFSPAHWMQLLEII 141 (380)
T ss_pred ccccccee-cc--chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccc-cccCHHHHHHHHHHH
Confidence 78888888 54 699999999999999999999999998665555567899999998865421 112222334567888
Q ss_pred HHHHcCCCCEEEEeccccchhH--HHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh
Q psy9060 152 SEIESSPKPIVAAISGSCLGGG--LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG 229 (366)
Q Consensus 152 ~~i~~~~kP~Iaav~G~a~GgG--~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g 229 (366)
....+++.|+.+++||++--|+ +-++.+|+|++....... ..+..+..+++.-+..
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y----------------------~~~~~~~l~e~g~~p~ 199 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPY----------------------TIGLNELLLEIGADPW 199 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHH----------------------HHHHHHHHHHcCCCHH
Confidence 9999999999999999998888 788999999998854321 4578888887433333
Q ss_pred HHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060 230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269 (366)
Q Consensus 230 g~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~ 269 (366)
-...+...+|...+-.-+-.|.-++..||++-|+++++.|
T Consensus 200 ~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~ 239 (380)
T KOG1683|consen 200 LIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGP 239 (380)
T ss_pred HHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccc
Confidence 3344444567666666677899999999999999999987
No 110
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.30 E-value=1e-05 Score=71.95 Aligned_cols=135 Identities=20% Similarity=0.278 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G 167 (366)
++.....++...+..+..++..+.+++.-.++ |+|+ .....+.+.|...+.|++..+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSp-----GG~v----------------~~~~~i~~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSP-----GGSV----------------TAGLAIYDTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECC-----CCCH----------------HHHHHHHHHHHhcCCCEEEEEEe
Confidence 45677888999998888776555544433222 2221 12245566677778999999999
Q ss_pred ccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH--------------
Q psy9060 168 SCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-------------- 231 (366)
Q Consensus 168 ~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-------------- 231 (366)
.|.++|.-+++++| .|++.+++ .|.+-+...+..-...-.
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a------------------------~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~ 132 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNS------------------------RIMIHQPLGGAGGQASDIEIQAKEILRLRRRL 132 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccch------------------------HHHHcCCCccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 79999877 555554433321111000
Q ss_pred -hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060 232 -QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQL 267 (366)
Q Consensus 232 -~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~v 267 (366)
..+....| .....+++..+.-++++||+++||||+|
T Consensus 133 ~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 133 NEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 00111122 2344567778888999999999999986
No 111
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.25 E-value=7.5e-06 Score=79.89 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=63.6
Q ss_pred eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHH
Q psy9060 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQ 149 (366)
Q Consensus 70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 149 (366)
.+.|++|.++.+= ..+ -...+.+++...++.+..+ .+||+.--+++.-..|.++ ...
T Consensus 89 ~~~v~VI~~~G~I-~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSpGG~v~~s~~------------------a~~ 145 (330)
T PRK11778 89 KPRLFVLDFKGDI-DAS-EVESLREEITAILAVAKPG---DEVLLRLESPGGVVHGYGL------------------AAS 145 (330)
T ss_pred CCeEEEEEEEEEE-CCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCCCCchhHHHH------------------HHH
Confidence 3679999988642 111 1223456666666555443 3455543333222121111 112
Q ss_pred HHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccC
Q psy9060 150 ILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192 (366)
Q Consensus 150 ~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~ 192 (366)
.+.++.+..||+++.+.+.|..||+.++.+||.++|.+.+-+|
T Consensus 146 ~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vG 188 (330)
T PRK11778 146 QLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVG 188 (330)
T ss_pred HHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEE
Confidence 2455667889999999999999999999999999999987665
No 112
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.22 E-value=7.7e-06 Score=79.84 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchh
Q psy9060 93 MSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGG 172 (366)
Q Consensus 93 ~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~Gg 172 (366)
.+...+.++.+..|+++++|||+--+|+.-..+ . +.+.+.+.++..-. ||++.|++.|..|
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a--------------s----~~i~~~l~~l~~~~-PV~v~v~~~AASG 142 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSPGGSVVA--------------S----ELIARALKRLRAKK-PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECcCCchhH--------------H----HHHHHHHHHHhhcC-CEEEEECCeecch
Confidence 567788899999999999988764443321110 1 12234444444444 9999999999999
Q ss_pred HHHHHhhccEEEEecCCccC
Q psy9060 173 GLEVALACHYRIAVKDKKTG 192 (366)
Q Consensus 173 G~elalacD~ria~~~ak~~ 192 (366)
|+.+++++|.+||++.+-+|
T Consensus 143 GY~IA~aAd~I~a~p~si~G 162 (317)
T COG0616 143 GYYIALAADKIVADPSSITG 162 (317)
T ss_pred hhhhhccCCEEEecCCceee
Confidence 99999999999999998776
No 113
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.18 E-value=3.4e-05 Score=70.81 Aligned_cols=135 Identities=20% Similarity=0.288 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEEE-eeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVII-SGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl~-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
++..+..++...|..++.++..+.+++. ...|+ ++ ..+..++..|..++.|++..+.
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v----------------~~g~~I~d~i~~~~~~v~t~~~ 101 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYINSPGG------SV----------------TAGDAIYDTIQFIRPDVQTVCT 101 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCC------cH----------------HHHHHHHHHHHhcCCCcEEEEE
Confidence 6778889999999998865433433333 33332 21 1234667777888889999999
Q ss_pred cccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc-cCCCChhHH------------
Q psy9060 167 GSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML-GLLPGAGGT------------ 231 (366)
Q Consensus 167 G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~-Gl~p~~gg~------------ 231 (366)
|.|.+.|.-++++|| .|++.+++ .|.+-.... |.. .|-.
T Consensus 102 G~aaSaa~lI~~ag~~~~R~~~p~s------------------------~imiH~p~~~~~~--~G~a~d~~~~~~~l~~ 155 (207)
T PRK12553 102 GQAASAGAVLLAAGTPGKRFALPNA------------------------RILIHQPSLGGGI--RGQASDLEIQAREILR 155 (207)
T ss_pred eehhhHHHHHHHcCCcCcEEECCCc------------------------hhhhcCccccCCC--ccCHHHHHHHHHHHHH
Confidence 999999999999999 58999877 444443321 111 1111
Q ss_pred ------hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 232 ------QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 232 ------~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
..+....| .....+++-.+.-++|+||+++||||+|++.
T Consensus 156 ~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 156 MRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 11222233 3445567778899999999999999999975
No 114
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.14 E-value=0.00037 Score=67.72 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
...++++-.+...+.++.+++.. += +|.+-..+++++ |.+- +.....+.+...+..+.....|+|++
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lP-IItlvDTpGA~~-G~~A----------E~~G~~~aiar~l~~~a~~~VP~IsV 198 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LP-ILTFIDTPGAWA-GVKA----------EKLGQGEAIAVNLREMFSFEVPIICT 198 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCc-CHHH----------HHHhHHHHHHHHHHHHHcCCCCEEEE
Confidence 35677888888888888887643 33 333334444443 3221 11122345566667778889999999
Q ss_pred eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060 165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244 (366)
Q Consensus 165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~ 244 (366)
|-|.|.|||......||++++.+++ .+ +++++-|....|-+ ...+|.
T Consensus 199 ViGeggsGGAlal~~aD~V~m~e~a------------------------~~-------sVisPEg~a~Il~~--d~~~a~ 245 (322)
T CHL00198 199 IIGEGGSGGALGIGIGDSIMMLEYA------------------------VY-------TVATPEACAAILWK--DSKKSL 245 (322)
T ss_pred EeCcccHHHHHhhhcCCeEEEeCCe------------------------EE-------EecCHHHHHHHHhc--chhhHH
Confidence 9999988886555569999999886 33 33343444444433 233433
Q ss_pred HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 245 DMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 245 ~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+ +...-.++|++.+++|+||+|+|.
T Consensus 246 ~-aA~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 246 D-AAEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred H-HHHHcCCCHHHHHhCCCCeEeccC
Confidence 3 334567999999999999999985
No 115
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.13 E-value=0.00043 Score=67.16 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
...++++-.+...+.++.+++-. += +|.+-..+++++ |.+- +.....+.+.+.+..+.....|+|++
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f~-iP-vVtlvDTpGa~~-g~~a----------E~~G~~~aia~~l~a~s~~~VP~IsV 195 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERFK-MP-IITFIDTPGAYP-GIGA----------EERGQSEAIARNLREMARLGVPVICT 195 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEECCCCCC-CHHH----------HHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 35677888888888888887543 34 343444444433 3221 11123455667777788899999999
Q ss_pred eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060 165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244 (366)
Q Consensus 165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~ 244 (366)
|-|.|.|||......||++++.+++ .+ +++++-|....|-+- ..++.
T Consensus 196 ViGeggsGGAla~~~aD~v~m~~~a------------------------~~-------sVisPEg~a~Il~kd--~~~a~ 242 (316)
T TIGR00513 196 VIGEGGSGGALAIGVGDKVNMLEYS------------------------TY-------SVISPEGCAAILWKD--ASKAP 242 (316)
T ss_pred EecccccHHHhhhccCCEEEEecCc------------------------eE-------EecCHHHHHHHhccc--hhhHH
Confidence 9999987777555569999999886 22 444444444444331 12222
Q ss_pred HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 245 DMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 245 ~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+..- -..+++.++++.|+||+|+|.
T Consensus 243 ~aae-~~~~ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 243 KAAE-AMKITAPDLKELGLIDSIIPE 267 (316)
T ss_pred HHHH-HccCCHHHHHHCCCCeEeccC
Confidence 2222 356789999999999999985
No 116
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.09 E-value=0.00046 Score=67.04 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
...++++-.+...+.++.+++-. +- +|.+-..++++. |.+-. .....+.+...+..+.....|+|++
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f~-lP-IVtlvDTpGa~~-G~~aE----------~~G~~~aia~~l~~~a~~~VP~IsV 195 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKFG-LP-IITFIDTPGAYP-GIGAE----------ERGQSEAIARNLREMARLKVPIICT 195 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCCCC-CHHHH----------hccHHHHHHHHHHHHhCCCCCEEEE
Confidence 45677888888888888776543 44 344444444443 33211 1123455667788888999999999
Q ss_pred eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060 165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244 (366)
Q Consensus 165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~ 244 (366)
|-|.|.|||......||++++.+++ . ++++++-|....|-+- ..++.
T Consensus 196 IiGeg~sGGAla~~~aD~v~m~~~A------------------------~-------~svisPEg~a~Il~~~--~~~a~ 242 (319)
T PRK05724 196 VIGEGGSGGALAIGVGDRVLMLEYS------------------------T-------YSVISPEGCASILWKD--ASKAP 242 (319)
T ss_pred EeCCccHHHHHHHhccCeeeeecCc------------------------e-------EeecCHHHHHHHHhcC--chhHH
Confidence 9999988887555569999999876 2 3455555555555442 23333
Q ss_pred HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 245 DMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 245 ~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+..- --.+++.++++.|+||+|++.
T Consensus 243 ~aae-~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 243 EAAE-AMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred HHHH-HcCCCHHHHHHCCCceEeccC
Confidence 3333 556899999999999999975
No 117
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.09 E-value=0.00025 Score=67.12 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=91.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
...++++-.+...+.++.+.+.. += +|.+...++++. |.+- +.....+.+...+..+...+.|+|+.
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lP-vV~lvDtpGa~~-g~~a----------E~~G~~~~ia~~~~~~s~~~VP~IsV 142 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RP-VVTFINTAGAYP-GVGA----------EERGQGEAIARNLMEMSDLKVPIIAI 142 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCC-CHhH----------HhccHHHHHHHHHHHHhCCCCCEEEE
Confidence 35677888888888888887643 34 344444444442 3221 11123455667777788899999999
Q ss_pred eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcC-HHHH
Q psy9060 165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA-LPNV 243 (366)
Q Consensus 165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G-~~~a 243 (366)
|-|.|.|||......||++++.+++ .+ +++++-|....+-+--. ...+
T Consensus 143 I~G~~~gGgA~a~~~~D~v~m~~~a------------------------~~-------~v~~pe~~a~il~~~~~~a~~a 191 (256)
T PRK12319 143 IIGEGGSGGALALAVADQVWMLENT------------------------MY-------AVLSPEGFASILWKDGSRATEA 191 (256)
T ss_pred EeCCcCcHHHHHhhcCCEEEEecCc------------------------eE-------EEcCHHHHHHHHhcCcccHHHH
Confidence 9999999988888899999999986 22 33333334434332111 1222
Q ss_pred HHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 244 LDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 244 ~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+.+ .+++.++++.|+||+|+++
T Consensus 192 a~~~----~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 192 AELM----KITAGELLEMGVVDKVIPE 214 (256)
T ss_pred HHHc----CCCHHHHHHCCCCcEecCC
Confidence 3333 7799999999999999986
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.07 E-value=0.00057 Score=68.23 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060 86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI 165 (366)
Q Consensus 86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav 165 (366)
..++++-.+...+.++.++... += ||.+-..++++ .|.+- +.....+.+...+..+....+|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lP-IVtLVDTpGA~-pG~~A----------Ee~Gqa~aIAr~l~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FP-ILTFVDTPGAY-AGIKA----------EELGQGEAIAFNLREMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcC-CCHHH----------HHHhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4577888888888888887643 33 33333444443 22221 112234556677778889999999999
Q ss_pred ccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhh-hcCHHHHH
Q psy9060 166 SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK-LTALPNVL 244 (366)
Q Consensus 166 ~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r-~~G~~~a~ 244 (366)
-|.+.+||......||++++.+++ .+ +++++-|....|-+ ..-...|.
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A------------------------~y-------sVisPEgaAsILwkd~~~A~eAA 315 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENA------------------------VY-------YVASPEACAAILWKSAAAAPKAA 315 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCC------------------------EE-------EecCHHHHHHHHhccccchHHHH
Confidence 999966665544568999999886 22 33333333333332 11122233
Q ss_pred HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 245 DMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 245 ~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+ .-.++|.++++.|+||+|++.
T Consensus 316 e----alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 316 E----ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred H----HcCCCHHHHHhCCCCeEeccC
Confidence 3 338999999999999999985
No 119
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.06 E-value=0.0009 Score=70.80 Aligned_cols=139 Identities=11% Similarity=0.085 Sum_probs=92.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
...+++.-.+...+.++.+.... += +|.+-..++++. |.+-.+ ....+.+...+..+....+|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LP-IVtLVDTpGA~p-G~~AEe----------~Gq~~aIArnl~amasl~VP~ISV 286 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FP-IVTFIDTPGAYA-DLKSEE----------LGQGEAIAHNLRTMFGLKVPIVSI 286 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCC-CchhHH----------HhHHHHHHHHHHHHhCCCCCEEEE
Confidence 45677777888888888776543 33 333334444443 322111 123455667777888999999999
Q ss_pred eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060 165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244 (366)
Q Consensus 165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~ 244 (366)
|-|.|.|||......||+++|.+++ . ++++++-|....|-+ ...+|.
T Consensus 287 ViGeggSGGAlA~g~aD~VlMle~A------------------------~-------~sVisPEgaAsILwk--d~~~A~ 333 (762)
T PLN03229 287 VIGEGGSGGALAIGCANKLLMLENA------------------------V-------FYVASPEACAAILWK--SAKAAP 333 (762)
T ss_pred EeCCcchHHHHHhhcCCEEEEecCC------------------------e-------EEecCHHHHHHHHhc--CcccHH
Confidence 9999988888777779999999876 2 244444444444433 222333
Q ss_pred HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 245 DMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 245 ~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+ +...-.++|++.+++|+||+|+|.
T Consensus 334 e-AAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 334 K-AAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred H-HHHHcCCCHHHHHhCCCCeeeccC
Confidence 2 334567999999999999999985
No 120
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.03 E-value=6.6e-05 Score=68.39 Aligned_cols=137 Identities=21% Similarity=0.212 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
++..+...+.+.|..++..+..+.+++ +...|+ |+ ..+..++..|...+.||+..+.
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v----------------~ag~aI~d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEGG------DI----------------DAGFAIFNMIRFVKPKVFTIGV 89 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CH----------------HHHHHHHHHHHhCCCCEEEEEE
Confidence 556777888888877765222232333 333332 21 1234677777888999999999
Q ss_pred cccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH-------------
Q psy9060 167 GSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT------------- 231 (366)
Q Consensus 167 G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~------------- 231 (366)
|.|.+.|.-++++||- |++.+++ .+.+-...-+....+.-.
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s------------------------~imiHqP~~~~~G~a~di~~~a~~l~~~~~~ 145 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNA------------------------RYLLHQPLSGFKGVATDIEIYANELNKVKSE 145 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCC------------------------cEEEEcCccccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 8888876 333322211111111000
Q ss_pred --hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 232 --QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 232 --~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
..+....| ......++-....++|+||+++||||+|++.
T Consensus 146 i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 146 LNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred HHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 00111223 2344566667778999999999999999976
No 121
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.94 E-value=3.1e-05 Score=69.32 Aligned_cols=137 Identities=20% Similarity=0.263 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHhhc-CCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 88 LNSEVMSEIQSILRRIQS-DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~-d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
++..+...+.+.|..++. ++.-...|.+...| +|+ ..+..+.+.|..++.|++..+.
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG------G~v----------------~~g~~i~~~i~~~~~~v~t~~~ 82 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSPG------GDV----------------DAGLAIYDAIRSSKAPVTTVVL 82 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE------BCH----------------HHHHHHHHHHHHSSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC------Ccc----------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 677888888888777743 22212223333333 332 1235677888889999999999
Q ss_pred cccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh------------
Q psy9060 167 GSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------ 232 (366)
Q Consensus 167 G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------------ 232 (366)
|.|.+.|.-++++|+. |++.+++ .|.+-+...+......-..
T Consensus 83 G~aaSaa~~i~~ag~~~~R~~~~~s------------------------~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~ 138 (182)
T PF00574_consen 83 GLAASAATLIFLAGDKGKRYASPNS------------------------RFMIHQPSTGSGGNASELREQAKELEKLNER 138 (182)
T ss_dssp EEEETHHHHHHHTSSTTTEEE-TT-------------------------EEEES-CEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CccccceehhhhcCCcCceeeeecC------------------------EEEeecceeecccccchhHHHHHHHHHHHHH
Confidence 9999999999999999 8999987 5555555433221111100
Q ss_pred ---HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 233 ---RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 233 ---~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+....| .....+++-...-++++||+++||||+|+.+
T Consensus 139 ~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 139 IANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1111122 2333455555566899999999999999863
No 122
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.92 E-value=1.1e-05 Score=86.83 Aligned_cols=60 Identities=48% Similarity=0.746 Sum_probs=56.4
Q ss_pred CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060 1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 60 (366)
Q Consensus 1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~ 60 (366)
+++|+||||.+++++++++...++++++..|++.|..+..|++++++++.|+.++..++.
T Consensus 235 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~ 294 (699)
T TIGR02440 235 KTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKE 294 (699)
T ss_pred hcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999999999999999999999999999999999888664
No 123
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.86 E-value=0.00029 Score=63.87 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G 167 (366)
++..+...+...+..+..++..+.+++.-.++ |+|+ ..+..++..|...+.|+...+.|
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp-----GG~v----------------~~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYINSP-----GGSI----------------TAGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEECC-----CCCH----------------HHHHHHHHHHHhcCCCEEEEEEE
Confidence 45666777878777777655444444432222 2332 12345666677777788888899
Q ss_pred ccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH--------------
Q psy9060 168 SCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-------------- 231 (366)
Q Consensus 168 ~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-------------- 231 (366)
.|.+.|.-+++++| .|++.+++ .|.+-+..-|......-.
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s------------------------~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~ 149 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNS------------------------RIMIHQPLGGAQGQASDIEIQANEILRLKGLL 149 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCc------------------------eEEEecCcccccCCcchhHHHHHHHHHHHHHH
Confidence 99999998888765 69999887 455433322211111000
Q ss_pred -hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060 232 -QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269 (366)
Q Consensus 232 -~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~ 269 (366)
..+....| .....+++-.+.-++|+||+++||||+|+.
T Consensus 150 ~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 150 NDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 01222233 244556777788899999999999999974
No 124
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.82 E-value=0.00037 Score=65.89 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=70.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
.+.++.+..+++.++++....+..+- +++-| .| +++ ....++.+.+.+.+.|+++.
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~T-pG------G~v----------------~AA~~I~~~l~~~~~~v~v~ 124 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIHT-PG------GLV----------------DAAEQIARALREHPAKVTVI 124 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceE-EEEEC-CC------CcH----------------HHHHHHHHHHHhCCCCEEEE
Confidence 46688888888888888887766553 33322 22 221 11235566777889999999
Q ss_pred eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060 165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA 228 (366)
Q Consensus 165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~ 228 (366)
|+..|..+|.-++|+||-+++.+.+ .+|--...+|-.|..
T Consensus 125 VP~~A~SAGTlIALaADeIvM~p~a------------------------~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMGPGA------------------------VLGPIDPQIGQYPAA 164 (285)
T ss_pred ECcccccHHHHHHHhCCeEEECCCC------------------------ccCCCCccccCCChH
Confidence 9999999999999999999999987 666666666666643
No 125
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.82 E-value=0.00047 Score=62.96 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
++.++..++...+-.++.++..+-+.+ +...|+... .+..++..+...+.||...+.
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~----------------------~g~aIyd~m~~~~~~V~Tv~~ 96 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVI----------------------SGLAIYDTMQFVKPDVHTICL 96 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchh----------------------hHHHHHHHHHhcCCCEEEEEE
Confidence 778888888888888774333233332 333332211 234577778888999999999
Q ss_pred cccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh------------
Q psy9060 167 GSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------ 232 (366)
Q Consensus 167 G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------------ 232 (366)
|.|.+.|.-|++++| .|++.+++ +|.+-....|..-|- .+.
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~s------------------------~imiHqp~~~~~~G~-a~di~~~a~~l~~~~ 151 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPHA------------------------RVMIHQPASSFYEGQ-ASEFVLEAEELLKLR 151 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCCC------------------------eEEEecCccCcCCCC-HHHHHHHHHHHHHHH
Confidence 999999999999998 68898877 455544333311111 111
Q ss_pred -----HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 233 -----RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 233 -----~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+....| .....+++-...-++|+||+++||||+|+.+
T Consensus 152 ~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 152 ETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence 1111223 2333456666777999999999999999975
No 126
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.75 E-value=0.00035 Score=64.69 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 88 LNSEVMSEIQSILRRIQS---DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~---d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
++..+...+...|-.++. +.++. |.+...|+...+ +..++..|...+.||...
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I~--lyINSpGGsv~a----------------------GlaIyd~m~~~~~~V~tv 118 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDIS--IYINSPGGSVYA----------------------GLGIYDTMQFISSDVATI 118 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCEE--EEEECCCcchhh----------------------HHHHHHHHHhcCCCEEEE
Confidence 566677777776655553 33444 223333433222 245667777888899999
Q ss_pred eccccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh----------
Q psy9060 165 ISGSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ---------- 232 (366)
Q Consensus 165 v~G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~---------- 232 (366)
+.|.|.+.|.-|++++|. |++.+++ .+.+-...-|.-..+.-..
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna------------------------~iMiHqP~~~~~G~a~di~i~a~el~~~~ 174 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHS------------------------RVMIHQPLGGAQGQASDIEITAREIQKLK 174 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCC------------------------EEEeccCCcccCCCcchHHHHHHHHHHHH
Confidence 999999999999999996 8888876 4444333222111100000
Q ss_pred -----HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 233 -----RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 233 -----~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+....| .....+++-...-++|+||+++||||+|+..
T Consensus 175 ~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 175 KELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 0112223 2334456667778999999999999999864
No 127
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.68 E-value=6.2e-05 Score=65.75 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=30.0
Q ss_pred HcCCCCEEEEeccccchhHHHHHhhccEEEEecCCcc
Q psy9060 155 ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191 (366)
Q Consensus 155 ~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~ 191 (366)
.+..|||||.++|.+..+++.++.+||-+++.+.+..
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~v 39 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSV 39 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EE
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEE
Confidence 4678999999999999999999999999999987644
No 128
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.68 E-value=0.00079 Score=61.30 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
++..+..++...|..++.++..+-+.+ +...|+... .+..++..|...+.||...+.
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~----------------------~g~aIyd~m~~~~~~V~t~~~ 91 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVY----------------------DGLGIFDTMQHVKPDVHTVCV 91 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchh----------------------hHHHHHHHHHhcCCCEEEEEE
Confidence 677888888888888875332232332 333332221 124667777788889999999
Q ss_pred cccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh------------
Q psy9060 167 GSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------ 232 (366)
Q Consensus 167 G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------------ 232 (366)
|.|.+.|.-+++++|- |++.+++ ++.+-...-|..-...-..
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a------------------------~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~ 147 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHS------------------------RIMIHQPLGGARGQASDIRIQADEILFLKER 147 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCC------------------------EEEEecCCcccCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999884 7777776 4444333212110000000
Q ss_pred ---HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 233 ---RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 233 ---~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+....| .....+++-.-.-++|+||++.||||+|++.
T Consensus 148 ~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 148 LNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred HHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence 0112223 2233456666677999999999999999975
No 129
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0015 Score=65.46 Aligned_cols=149 Identities=17% Similarity=0.285 Sum_probs=104.5
Q ss_pred eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHH
Q psy9060 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQ 149 (366)
Q Consensus 70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 149 (366)
++.|.++.++ +.+++.+.+.+.+.++.++++.. ..+|+.-..++.+ .+..++
T Consensus 25 ~~~v~vi~i~------g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~ 76 (436)
T COG1030 25 EKKVYVIEID------GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQ 76 (436)
T ss_pred CCeEEEEEec------CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHH
Confidence 4568888885 45899999999999999998763 3344433333322 134578
Q ss_pred HHHHHHcCCCCEEEEe---ccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC--
Q psy9060 150 ILSEIESSPKPIVAAI---SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL-- 224 (366)
Q Consensus 150 ~~~~i~~~~kP~Iaav---~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl-- 224 (366)
+.+.+.+.+.|++..| .+.|..+|..++++||+..|.+.. .+|-...-.+-
T Consensus 77 iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT------------------------~iGaa~Pi~~~g~ 132 (436)
T COG1030 77 IVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGT------------------------NIGAATPIAGGGT 132 (436)
T ss_pred HHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCC------------------------cccccceecCCCC
Confidence 8999999999988888 346999999999999999999875 44443222111
Q ss_pred -CCChh-HHhHHh------hhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 225 -LPGAG-GTQRLP------KLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 225 -~p~~g-g~~~l~------r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+... ....+. +.- ....|.+++.....++++||++.|++|-+..+
T Consensus 133 ~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 133 SAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 11111 111111 122 34567789999999999999999999999875
No 130
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.65 E-value=0.012 Score=56.31 Aligned_cols=147 Identities=24% Similarity=0.316 Sum_probs=85.1
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCC----CccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS----SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQ 148 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~----~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 148 (366)
|.++-.+.-- ..-+++...-+.+..+++.+.+|. .+- +|++..+++ +.+.+ .. .....+.+. .
T Consensus 61 v~v~a~D~t~-~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSgG-----aRlqE--g~---~~L~~~a~i-~ 127 (274)
T TIGR03133 61 VVVAAQEGRF-QGGSVGEVHGAKIVGALRLAIEDNRKGQPTA-VVLLLDTGG-----VRLQE--AN---AGLIAIAEI-M 127 (274)
T ss_pred EEEEEECCCc-cCcCCCHHHHHHHHHHHHHHHhhhhccCCCC-EEEEEcCCC-----cChhh--hH---HHHHHHHHH-H
Confidence 5555554433 456788778899999999887621 123 344433333 33322 10 111111111 1
Q ss_pred HHHHHHHcCCCCEEEEeccc--cchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc--cchhccC
Q psy9060 149 QILSEIESSPKPIVAAISGS--CLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL--PEVMLGL 224 (366)
Q Consensus 149 ~~~~~i~~~~kP~Iaav~G~--a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~--pe~~~Gl 224 (366)
..+.++... .|+|+.|.|+ |+||+...+..||++|+++++ ++++ |++
T Consensus 128 ~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a------------------------~i~~aGP~V---- 178 (274)
T TIGR03133 128 RAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEG------------------------RLGLSGPEV---- 178 (274)
T ss_pred HHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCc------------------------EEeccCHHH----
Confidence 122233333 8999999999 899999999999999999876 3443 222
Q ss_pred CCChhHHhHHhhhcCH--HHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 225 LPGAGGTQRLPKLTAL--PNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 225 ~p~~gg~~~l~r~~G~--~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.-...|. -...+.-+.-+.+.++.....|++|.++++
T Consensus 179 ---------Ie~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 179 ---------IEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVED 217 (274)
T ss_pred ---------HHHhcCCCccCHHHhcccccccchHhHhhcccceEEeCC
Confidence 1111221 122233334445666677889999999986
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.60 E-value=0.0033 Score=58.88 Aligned_cols=147 Identities=13% Similarity=0.203 Sum_probs=88.7
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHHh-hcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHH
Q psy9060 76 VTLDSPGVKVNSLNSEVMSEIQSILRRI-QSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEI 154 (366)
Q Consensus 76 Itlnrp~~~~Nal~~~~~~eL~~al~~~-~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 154 (366)
|.=|+|. . .++.+--..+...+... +++..+- +|.+-..++ |-.|. ..+...+.+.+.+++..+
T Consensus 36 vIa~~~~--~-~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDtpG-~~~g~----------~aE~~G~~~a~A~l~~a~ 100 (238)
T TIGR03134 36 VIGVVPD--A-EVGLDEALALAQAVLDVIEADDKRP-IVVLVDTPS-QAYGR----------REELLGINQALAHLAKAL 100 (238)
T ss_pred EEEECCC--C-cCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeCCC-CCCCH----------HHHHHHHHHHHHHHHHHH
Confidence 3344454 2 57766666667767664 4445555 344445443 33332 233333445556555555
Q ss_pred H---cCCCCEEEEeccccchhHHHH-HhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhH
Q psy9060 155 E---SSPKPIVAAISGSCLGGGLEV-ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG 230 (366)
Q Consensus 155 ~---~~~kP~Iaav~G~a~GgG~el-alacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg 230 (366)
. +.+.|+|+.|-|.+.|||+.- .+.+|.++|-+++ .++.++.-+.
T Consensus 101 a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A-------------------------------~i~vm~~e~a 149 (238)
T TIGR03134 101 ALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGA-------------------------------MVHVMDLESM 149 (238)
T ss_pred HHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCc-------------------------------EEEecCHHHH
Confidence 5 455999999999999988644 4447777766554 4566665555
Q ss_pred HhHHhhhcCHHHHHHHHhcC--CCcCHHHHHHcCCcceecCC
Q psy9060 231 TQRLPKLTALPNVLDMTLTG--KTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 231 ~~~l~r~~G~~~a~~l~ltG--~~~~a~eA~~~GLVd~vv~~ 270 (366)
...+-+-. ..+.++.-+- ...+++.+.++|+||+|+++
T Consensus 150 a~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~ 189 (238)
T TIGR03134 150 ARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHALLDV 189 (238)
T ss_pred HHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccEEeCC
Confidence 55444432 3344443332 23577889999999999986
No 132
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.55 E-value=0.0011 Score=60.56 Aligned_cols=134 Identities=18% Similarity=0.271 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHhhcC---CCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060 87 SLNSEVMSEIQSILRRIQSD---SSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA 163 (366)
Q Consensus 87 al~~~~~~eL~~al~~~~~d---~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia 163 (366)
.++.++-..+...+-.++.+ .+|. |.+...|+... .+..++..|...+-||..
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~--l~INSpGG~v~----------------------~GlaIyd~m~~~~~~V~T 90 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQ--MYINCPGGEVY----------------------AGLAIYDTMRYIKAPVST 90 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEE--EEEECCCCchh----------------------hHHHHHHHHHhcCCCEEE
Confidence 36777777777777666653 2344 23333333211 234677778888889999
Q ss_pred EeccccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhH--------
Q psy9060 164 AISGSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR-------- 233 (366)
Q Consensus 164 av~G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~-------- 233 (366)
.+.|.|.+.|.-+++++|- |++.+++ ++-+-....|.. +.....
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna------------------------~iMIHqp~~~~~--G~a~di~~~a~el~ 144 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNS------------------------RIMIHQGSAGFR--GNTPDLEVQAKEVL 144 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCe------------------------EEEEecCCCCCC--CCHHHHHHHHHHHH
Confidence 9999999999999999995 8898887 444433332321 111111
Q ss_pred ---------HhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 234 ---------LPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 234 ---------l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+.+..| ...-.+++-...-++|+||+++||||+|+++
T Consensus 145 ~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 145 FLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence 112223 2333456666677899999999999999975
No 133
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.45 E-value=0.015 Score=56.20 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=64.6
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHH
Q psy9060 75 VVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEI 154 (366)
Q Consensus 75 ~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 154 (366)
.|..|.+.-...+++...-+.+..+++.+.+.. +-. |++...|+ +.+.+ . .....++. .....+.++
T Consensus 124 ~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPl-V~l~dsgG-----armqE--g---i~sL~~~a-k~~~a~~~~ 190 (292)
T PRK05654 124 VLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPL-VIFSASGG-----ARMQE--G---LLSLMQMA-KTSAALKRL 190 (292)
T ss_pred EEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCE-EEEEcCCC-----cchhh--h---hhHHHhHH-HHHHHHHHH
Confidence 334444443568899999999999999987764 453 44444443 22211 0 01111111 122334445
Q ss_pred HcCCCCEEEEeccccchhHHH-HHhhccEEEEecCC
Q psy9060 155 ESSPKPIVAAISGSCLGGGLE-VALACHYRIAVKDK 189 (366)
Q Consensus 155 ~~~~kP~Iaav~G~a~GgG~e-lalacD~ria~~~a 189 (366)
.....|.|+++.|+|+||+.. .++.+|++||.+++
T Consensus 191 ~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A 226 (292)
T PRK05654 191 SEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKA 226 (292)
T ss_pred HcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCc
Confidence 566799999999999999754 47779999998866
No 134
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.43 E-value=0.00015 Score=78.29 Aligned_cols=60 Identities=62% Similarity=0.917 Sum_probs=55.7
Q ss_pred CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060 1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 60 (366)
Q Consensus 1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~ 60 (366)
+++|+||||.++.++++.+...++++++..|++.|.++..|++++++++.|+.++..++.
T Consensus 240 ~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~ 299 (708)
T PRK11154 240 KTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKD 299 (708)
T ss_pred hcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999999999999999999999999999998887654
No 135
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.39 E-value=0.00098 Score=70.33 Aligned_cols=80 Identities=21% Similarity=0.146 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060 92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG 171 (366)
Q Consensus 92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G 171 (366)
.+.++.++|+.+.+|+.|++||+.-... .|.++. .. +.+.+.+..+....|||||..++.+ -
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~---------~~----~ei~~ai~~fk~sgKpVvA~~~~~~-s 138 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSP---------HL----VEIGSALSEFKDSGKPVYAYGTNYS-Q 138 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHH---------HH----HHHHHHHHHHHhcCCeEEEEEcccc-c
Confidence 4679999999999999999987743221 132221 11 1234445566677999999887765 6
Q ss_pred hHHHHHhhccEEEEecCC
Q psy9060 172 GGLEVALACHYRIAVKDK 189 (366)
Q Consensus 172 gG~elalacD~ria~~~a 189 (366)
+|+.|+.+||.+++.+..
T Consensus 139 ~~YylAs~AD~I~~~p~G 156 (584)
T TIGR00705 139 GQYYLASFADEIILNPMG 156 (584)
T ss_pred hhhhhhhhCCEEEECCCc
Confidence 789999999999999864
No 136
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.30 E-value=0.022 Score=54.83 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=65.0
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS 152 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
|+++-.| +.-...+++....+.+..+++.+.+.. +- +|++..+|++ -+.+ . .....++.+ ....+.
T Consensus 122 V~v~a~D-~~f~gGSmg~~~geKi~r~~e~A~~~~-lP-lV~l~dSgGa-----RmqE---g--~~sL~~~ak-~~~~~~ 187 (285)
T TIGR00515 122 IVVAVFD-FAFMGGSMGSVVGEKFVRAIEKALEDN-CP-LIIFSASGGA-----RMQE---A--LLSLMQMAK-TSAALA 187 (285)
T ss_pred EEEEEEe-ccccCCCccHHHHHHHHHHHHHHHHcC-CC-EEEEEcCCCc-----cccc---c--hhHHHhHHH-HHHHHH
Confidence 4444443 332567899999999999999887653 44 3444554443 1111 0 011112211 122344
Q ss_pred HHHcCCCCEEEEeccccchhHHH-HHhhccEEEEecCC
Q psy9060 153 EIESSPKPIVAAISGSCLGGGLE-VALACHYRIAVKDK 189 (366)
Q Consensus 153 ~i~~~~kP~Iaav~G~a~GgG~e-lalacD~ria~~~a 189 (366)
++.....|.|+++.|+|+||+.. .++.+|++||.+++
T Consensus 188 ~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A 225 (285)
T TIGR00515 188 KMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKA 225 (285)
T ss_pred HHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCe
Confidence 55667899999999999999754 56799999999876
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.24 E-value=0.024 Score=58.99 Aligned_cols=150 Identities=19% Similarity=0.293 Sum_probs=93.3
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy9060 77 TLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIES 156 (366)
Q Consensus 77 tlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (366)
.-|+|.....+++....+...+.++.+.+. .+- +|.+...++ |..|.+ .+.....+.+.+++..+.+
T Consensus 320 vAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lP-lV~lvDs~G-~~~g~~----------~E~~g~~~~~a~~~~a~~~ 386 (512)
T TIGR01117 320 IANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIP-IVTFVDVPG-FLPGVN----------QEYGGIIRHGAKVLYAYSE 386 (512)
T ss_pred EEeccccccCCCCHHHHHHHHHHHHHHHHc-CCC-EEEEEeCcC-ccccHH----------HHHHHHHHHHHHHHHHHHh
Confidence 444554345679999999999999988754 344 344444443 555432 2223345566778888889
Q ss_pred CCCCEEEEeccccchhHHHHHhh----ccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh
Q psy9060 157 SPKPIVAAISGSCLGGGLEVALA----CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232 (366)
Q Consensus 157 ~~kP~Iaav~G~a~GgG~elala----cD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~ 232 (366)
...|.|+.|-|.+.|||+.-+.. +|+++|.+++. +|++++-++..
T Consensus 387 ~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~-------------------------------~~v~~pe~a~~ 435 (512)
T TIGR01117 387 ATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAE-------------------------------IAVMGPAGAAN 435 (512)
T ss_pred CCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCe-------------------------------EeecCHHHHHH
Confidence 99999999999998886544432 89988888762 33333333333
Q ss_pred HHhhh-c----CHHHHHHH-H--hcCCCcCHHHHHHcCCcceecCC
Q psy9060 233 RLPKL-T----ALPNVLDM-T--LTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 233 ~l~r~-~----G~~~a~~l-~--ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+-+. + ....+... + ..-+..++..+.+.|+||.|++|
T Consensus 436 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P 481 (512)
T TIGR01117 436 IIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEP 481 (512)
T ss_pred HHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeECh
Confidence 33211 1 01111111 1 12234578899999999999998
No 138
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.13 E-value=0.021 Score=55.20 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=64.4
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCC----CccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS----SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQ 148 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~----~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 148 (366)
|+++-.+.-- ..-+++....+.+..+++.+.++. .+-. |++..+|+ +.+.+ .+ .....+.+. .
T Consensus 70 v~v~a~D~tf-~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~Pv-V~l~dSGG-----aRlqE--g~---~~L~~~a~i-~ 136 (301)
T PRK07189 70 VVVAAQEGRF-MGGSVGEVHGAKLAGALELAAEDNRNGIPTAV-LLLFETGG-----VRLQE--AN---AGLAAIAEI-M 136 (301)
T ss_pred EEEEEECCCc-cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCE-EEEecCCC-----cCccc--hH---HHHHHHHHH-H
Confidence 4455554433 457788888899999999988765 1443 44433333 23321 00 111111111 1
Q ss_pred HHHHHHHcCCCCEEEEeccc--cchhHHHHHhhccEEEEecCC
Q psy9060 149 QILSEIESSPKPIVAAISGS--CLGGGLEVALACHYRIAVKDK 189 (366)
Q Consensus 149 ~~~~~i~~~~kP~Iaav~G~--a~GgG~elalacD~ria~~~a 189 (366)
..+..+... +|+|+.|.|. |+||+...+..||++|+++++
T Consensus 137 ~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a 178 (301)
T PRK07189 137 RAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEG 178 (301)
T ss_pred HHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCc
Confidence 222233333 8999999999 999999999999999999876
No 139
>PRK10949 protease 4; Provisional
Probab=97.10 E-value=0.0062 Score=64.62 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060 92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG 171 (366)
Q Consensus 92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G 171 (366)
.+.++.++|+.+.+|+.|+++|+.-...+ |..+ ... +.+.+.+..+....||+||. ...+.-
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~---------a~~----~eI~~ai~~fk~sGKpVvA~-~~~~~s 157 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQ---------PSM----QYIGKALREFRDSGKPVYAV-GDSYSQ 157 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccH---------HHH----HHHHHHHHHHHHhCCeEEEE-ecCccc
Confidence 34689999999999999999877543221 2111 111 22345556666778999985 444556
Q ss_pred hHHHHHhhccEEEEecCC
Q psy9060 172 GGLEVALACHYRIAVKDK 189 (366)
Q Consensus 172 gG~elalacD~ria~~~a 189 (366)
+++.||.+||.+++.+..
T Consensus 158 ~~YyLASaAD~I~l~P~G 175 (618)
T PRK10949 158 GQYYLASFANKIYLSPQG 175 (618)
T ss_pred hhhhhhhhCCEEEECCCc
Confidence 789999999999999865
No 140
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.03 E-value=0.012 Score=53.43 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEE--EEecCC
Q psy9060 148 QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR--IAVKDK 189 (366)
Q Consensus 148 ~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~r--ia~~~a 189 (366)
..++..+...+.||...+-|.+...|.-|+++++.. ++.+++
T Consensus 75 ~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPns 118 (200)
T COG0740 75 LAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNA 118 (200)
T ss_pred HHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCc
Confidence 456777888899999999999999999999998764 555544
No 141
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.02 E-value=0.061 Score=51.85 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=62.8
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS 152 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
|++.-.|.-- ...++....-+.+..+++.+.+.. +- +|++..+|+ +-+.+ .. ....++.+. ...+.
T Consensus 135 v~v~a~Dftf-~gGSmG~v~geKi~ra~e~A~~~r-lP-lV~l~~SGG-----ARmQE--g~---~sL~qmak~-saa~~ 200 (296)
T CHL00174 135 VALGVMDFQF-MGGSMGSVVGEKITRLIEYATNES-LP-LIIVCASGG-----ARMQE--GS---LSLMQMAKI-SSALY 200 (296)
T ss_pred EEEEEECCcc-cccCcCHHHHHHHHHHHHHHHHcC-CC-EEEEECCCC-----ccccc--cc---hhhhhhHHH-HHHHH
Confidence 4444455433 567888888999999999887654 44 344444433 23322 11 111122111 11122
Q ss_pred H-HHcCCCCEEEEeccccchhHHHH-HhhccEEEEecCC
Q psy9060 153 E-IESSPKPIVAAISGSCLGGGLEV-ALACHYRIAVKDK 189 (366)
Q Consensus 153 ~-i~~~~kP~Iaav~G~a~GgG~el-alacD~ria~~~a 189 (366)
. ...-..|.|+++.|+|.||+... ++.||++|+.+++
T Consensus 201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A 239 (296)
T CHL00174 201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNA 239 (296)
T ss_pred HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCe
Confidence 2 22456899999999999998765 6679999987665
No 142
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.02 E-value=0.00074 Score=72.96 Aligned_cols=60 Identities=30% Similarity=0.525 Sum_probs=55.9
Q ss_pred CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060 1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 60 (366)
Q Consensus 1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~ 60 (366)
+++++||+|.+++++++.+...++++++..|.+.|.++..|+++++.++.|+.++.+++.
T Consensus 243 ~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~ 302 (715)
T PRK11730 243 KAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGK 302 (715)
T ss_pred hhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999999999999999999999999999999888654
No 143
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.85 E-value=0.055 Score=56.12 Aligned_cols=101 Identities=18% Similarity=0.298 Sum_probs=65.1
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCC--CcchhhhcCCHHHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA--DISMLAACKTADQVKQISKSGQQI 150 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (366)
|.++..|.- -...+++....+.+..+++.+.++. +-.|.+ .. |+|+ ++.+-. .....+.+. ..-
T Consensus 59 v~v~a~D~t-~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l-~d-----sgGa~~r~~eg~-----~~l~~~g~i-~~~ 124 (493)
T PF01039_consen 59 VVVIAQDFT-VLGGSVGEVHGEKIARAIELALENG-LPLVYL-VD-----SGGAFLRMQEGV-----ESLMGMGRI-FRA 124 (493)
T ss_dssp EEEEEEETT-SGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEE-EE-----ESSBCGGGGGHH-----HHHHHHHHH-HHH
T ss_pred EEEEEeccc-eecCCCCcccceeeehHHHHHHHcC-CCcEEe-cc-----ccccccccchhh-----hhhhhhHHH-HHH
Confidence 333344433 2567899999999999999988764 343333 22 3444 333211 111222222 223
Q ss_pred HHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC
Q psy9060 151 LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188 (366)
Q Consensus 151 ~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ 188 (366)
..++.. ..|+|++|.|+|.|||..++..||++|++++
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~ 161 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKG 161 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETT
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCcc
Confidence 344555 8899999999999999999999999999987
No 144
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.81 E-value=0.022 Score=52.79 Aligned_cols=142 Identities=19% Similarity=0.231 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHhhcC---CCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 88 LNSEVMSEIQSILRRIQSD---SSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 88 l~~~~~~eL~~al~~~~~d---~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
.+.++.+.+...+-.++.+ .+|. +.+...|+...+|-=+.. ...+..++..|...+-||...
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~--lyINSpGGsv~~G~~iG~-------------v~~glaIyD~m~~ik~~V~Tv 113 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIY--FYINSTGTSWYTGDAIGF-------------ETEAFAICDTMRYIKPPVHTI 113 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEE--EEEeCCCCCccccccccc-------------cccHHHHHHHHHhcCCCeEEE
Confidence 4445777777766666543 3444 334555555555511100 012345677777778899999
Q ss_pred eccccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhH---------
Q psy9060 165 ISGSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR--------- 233 (366)
Q Consensus 165 v~G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~--------- 233 (366)
+-|.|.+.+.-|++++|- |++.+++ ++-+-....|. -| -.+..
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns------------------------~iMIHqP~~~~-~G-~A~di~~~a~el~~ 167 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHA------------------------TIVLHQPRSGA-RG-QATDIQIRAKEVLH 167 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCc------------------------EEEeccCCccc-cc-CHHHHHHHHHHHHH
Confidence 999999999999999985 8888776 44443332222 11 11110
Q ss_pred --------HhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 234 --------LPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 234 --------l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+....| ...-.+++-.-.-++|+||+++||||+|+.+
T Consensus 168 ~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 168 NKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 011112 1222344445566899999999999999965
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.99 E-value=0.35 Score=50.95 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060 84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA 163 (366)
Q Consensus 84 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia 163 (366)
...+++....+.+..+++.+.+.. +- +|.+..+++.+-.+ ....+ . ....+.+ +..-..++.....|.|+
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~~~-lP-lV~l~DSgGarl~~-q~e~~----~--~~~~~g~-if~~~~~ls~~~VP~Is 210 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQCR-LP-CIYLVDSGGANLPR-QAEVF----P--DRDHFGR-IFYNQARMSSAGIPQIA 210 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCCcc-ccccc----c--hHhHHHH-HHHHHHHHhCCCCCEEE
Confidence 568899999999999999887654 44 34444444433221 00000 0 0001111 11112234455689999
Q ss_pred EeccccchhHHHHHhhccEEEEecCC
Q psy9060 164 AISGSCLGGGLEVALACHYRIAVKDK 189 (366)
Q Consensus 164 av~G~a~GgG~elalacD~ria~~~a 189 (366)
+|.|.|.|||......||++|++++.
T Consensus 211 vv~G~~~gGgAy~~a~~D~vim~~~~ 236 (569)
T PLN02820 211 LVLGSCTAGGAYVPAMADESVIVKGN 236 (569)
T ss_pred EEeCCCChHHHHHHHhCCceEEecCC
Confidence 99999999999999999999999763
No 146
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.27 E-value=0.47 Score=49.46 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060 84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA 163 (366)
Q Consensus 84 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia 163 (366)
..-+++....+.+..+++.+.++. +- +|.+..+++. .+.+ .... ...+.+.+... . ...-..|.|+
T Consensus 94 ~gGS~g~~~~~K~~r~~e~A~~~~-lP-lV~l~dSgGa-----rm~e--g~~~---l~~~~~~~~~~-~-~~s~~iP~Is 159 (512)
T TIGR01117 94 MGGSLGEMHAAKIVKIMDLAMKMG-AP-VVGLNDSGGA-----RIQE--AVDA---LKGYGDIFYRN-T-IASGVVPQIS 159 (512)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcC-CC-EEEEecCCCC-----Cccc--cchh---hhhHHHHHHHH-H-HHcCCCcEEE
Confidence 457788888899999999887765 34 3444443333 2221 0000 11111111111 1 1233589999
Q ss_pred EeccccchhHHHHHhhccEEEEecCC
Q psy9060 164 AISGSCLGGGLEVALACHYRIAVKDK 189 (366)
Q Consensus 164 av~G~a~GgG~elalacD~ria~~~a 189 (366)
+|.|+|.||+......||++|+.++.
T Consensus 160 vv~G~~~GG~a~~~al~D~vim~~~~ 185 (512)
T TIGR01117 160 AIMGPCAGGAVYSPALTDFIYMVDNT 185 (512)
T ss_pred EEecCCCcHHHHHHHhcCceEEeccc
Confidence 99999999998887799999999864
No 147
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.19 E-value=0.11 Score=49.52 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL 224 (366)
Q Consensus 145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl 224 (366)
+.+.+-+..+.+++.|+|+.|=|-.-+||.--..-+|.+.+.+++ +++ +
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s------------------------~yS-------V 223 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENS------------------------TYS-------V 223 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhc------------------------eee-------e
Confidence 344556677889999999999998877776555567888888776 333 2
Q ss_pred CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
+++-|.+..|=+ ...+|.+. ...-.++|++.+++|+||.|+|.
T Consensus 224 isPEG~AsILWk--D~~ka~eA-Ae~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 224 ISPEGCASILWK--DASKAKEA-AEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred cChhhhhhhhhc--ChhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence 333333333322 34455443 34567999999999999999975
No 148
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.06 E-value=0.99 Score=47.67 Aligned_cols=140 Identities=14% Similarity=0.229 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060 87 SLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166 (366)
Q Consensus 87 al~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~ 166 (366)
.++.+-.+...+.++.+.. -++- +|.+...+ .|..|.+ .+...+.+.+.+++..+.....|.|++|-
T Consensus 381 ~l~~~~a~Kaarfi~lc~~-~~iP-lv~l~D~p-Gf~~G~~----------~E~~G~~~~~a~l~~A~a~~~VP~isvi~ 447 (569)
T PLN02820 381 ILFTESALKGAHFIELCAQ-RGIP-LLFLQNIT-GFMVGSR----------SEASGIAKAGAKMVMAVACAKVPKITIIV 447 (569)
T ss_pred ccCHHHHHHHHHHHHHHHh-cCCC-EEEEEECC-CCCCCHH----------HHHhhHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4677777777888877765 3455 34444443 3666543 22234567888999999999999999999
Q ss_pred cccchhHHHHHh----hccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhh-c---
Q psy9060 167 GSCLGGGLEVAL----ACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL-T--- 238 (366)
Q Consensus 167 G~a~GgG~elal----acD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~-~--- 238 (366)
|.++|+|..-+. ..|++++.++ ..+|++++-++...+.+. +
T Consensus 448 g~a~G~g~~aM~g~~~~~d~~~awp~-------------------------------A~i~vmg~e~aa~il~~~e~~~~ 496 (569)
T PLN02820 448 GGSFGAGNYGMCGRAYSPNFLFMWPN-------------------------------ARIGVMGGAQAAGVLAQIERENK 496 (569)
T ss_pred CCcchHHHHHhcCcCCCCCEEEECCC-------------------------------CeEEecCHHHHHHHHHHHHhhhh
Confidence 999998876554 3455555544 456777766666555431 1
Q ss_pred ---------CHHHHH-HHH--hcCCCcCHHHHHHcCCcceecCC
Q psy9060 239 ---------ALPNVL-DMT--LTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 239 ---------G~~~a~-~l~--ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
....++ +.+ ..-+..++-.|.+.|+||.|++|
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP 540 (569)
T PLN02820 497 KRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDP 540 (569)
T ss_pred hhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCH
Confidence 111111 111 11224577788899999999988
No 149
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.76 E-value=0.36 Score=50.14 Aligned_cols=151 Identities=16% Similarity=0.295 Sum_probs=89.9
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHH
Q psy9060 76 VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIE 155 (366)
Q Consensus 76 Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (366)
|.-|+|....-.++.+-.....+.++.+... ++- +|.+...+ .|..|-+ .+.....+.+.+++..+.
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iP-lv~l~dtp-Gf~~g~~----------~E~~g~~~~ga~~~~a~~ 364 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDAF-NIP-LVTLVDTP-GFMPGPE----------AERAGIIRAGARLLYALA 364 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T---EEEEEEEC-EB--SHH----------HHHTTHHHHHHHHHHHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHhh-CCc-eEEEeecc-cccccch----------hhhcchHHHHHHHHHHHH
Confidence 3445554223369999999999988888763 455 44444443 4655432 333456678889999999
Q ss_pred cCCCCEEEEeccccchhHHHHHhhc----cEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH
Q psy9060 156 SSPKPIVAAISGSCLGGGLEVALAC----HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT 231 (366)
Q Consensus 156 ~~~kP~Iaav~G~a~GgG~elalac----D~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~ 231 (366)
+++.|+|..|-|.+.|||....... |+++|.+++ .+|++++-+..
T Consensus 365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a-------------------------------~~~vm~~e~a~ 413 (493)
T PF01039_consen 365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTA-------------------------------EIGVMGPEGAA 413 (493)
T ss_dssp HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT--------------------------------EEESS-HHHHH
T ss_pred cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcc-------------------------------eeeecChhhhh
Confidence 9999999999999999887555544 666666655 45565555554
Q ss_pred hHHhhhc-------C--HHH-HHHHHh--cCCCcCHHHHHHcCCcceecCC
Q psy9060 232 QRLPKLT-------A--LPN-VLDMTL--TGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 232 ~~l~r~~-------G--~~~-a~~l~l--tG~~~~a~eA~~~GLVd~vv~~ 270 (366)
..+-+.- | ... ..+++- .-+..++..+...|++|.|++|
T Consensus 414 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p 464 (493)
T PF01039_consen 414 SILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDP 464 (493)
T ss_dssp HHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG
T ss_pred eeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH
Confidence 4443211 1 000 111111 1122588899999999999987
No 150
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=93.99 E-value=3.2 Score=39.54 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA 164 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 164 (366)
...+..-.-+.+..+++.+-++. .. +|+.+.+|++ -..| . .-...++. .....+.++.....|.|+.
T Consensus 135 gGSmGsVvGeki~ra~E~A~e~k-~P-~v~f~aSGGA-----RMQE--g---~lSLMQMa-ktsaAl~~l~ea~lpyIsV 201 (294)
T COG0777 135 GGSMGSVVGEKITRAIERAIEDK-LP-LVLFSASGGA-----RMQE--G---ILSLMQMA-KTSAALKRLSEAGLPYISV 201 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CC-EEEEecCcch-----hHhH--H---HHHHHHHH-HHHHHHHHHHhcCCceEEE
Confidence 45677777799999999988765 45 3455655542 1111 0 01122222 2345567778888999999
Q ss_pred eccccchhH-HHHHhhccEEEEecCC
Q psy9060 165 ISGSCLGGG-LEVALACHYRIAVKDK 189 (366)
Q Consensus 165 v~G~a~GgG-~elalacD~ria~~~a 189 (366)
+..+..||= ...++..|+.||.+.+
T Consensus 202 Lt~PTtGGVsASfA~lGDi~iAEP~A 227 (294)
T COG0777 202 LTDPTTGGVSASFAMLGDIIIAEPGA 227 (294)
T ss_pred ecCCCccchhHhHHhccCeeecCccc
Confidence 999999884 4778889999988766
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=91.11 E-value=0.38 Score=49.86 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060 84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA 163 (366)
Q Consensus 84 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia 163 (366)
+..++.+-..+.+..+.+.+.++.. -++.|..+ .|+.+.+-.. + ...+. .+..-..++... +|.|+
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~~g~-P~i~l~ds------gGari~~~v~--~---l~g~g-~iF~~~a~~Sg~-IPqIs 168 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIENGL-PVIGLNDS------GGARIQEGVP--S---LAGYG-RIFYRNARASGV-IPQIS 168 (526)
T ss_pred ecccccccccchHHHHHHHHHHcCC-CEEEEEcc------cccccccCcc--c---cccch-HHHHHHHHhccC-CCEEE
Confidence 5677777777888888887776543 22333222 3333332100 0 00000 111112223334 89999
Q ss_pred EeccccchhHHHHHhhccEEEEecCC
Q psy9060 164 AISGSCLGGGLEVALACHYRIAVKDK 189 (366)
Q Consensus 164 av~G~a~GgG~elalacD~ria~~~a 189 (366)
+|.|.|.|||..+...||++|+.++.
T Consensus 169 vv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 169 VVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred EEEecCcccccccccccceEEEEcCC
Confidence 99999999999999999999999984
No 152
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=85.96 E-value=14 Score=38.57 Aligned_cols=157 Identities=18% Similarity=0.269 Sum_probs=97.4
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS 152 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (366)
|++ .-|+|......|+.+--+.-.+.++-... .++- +|++... ..|.-|-| .+...+.+++..++.
T Consensus 326 VGi-IANqp~~~~G~l~~~sa~KaArFI~~cd~-~~iP-lv~L~d~-pGFm~G~~----------~E~~giik~Gakl~~ 391 (526)
T COG4799 326 VGI-IANQPRHLGGVLDIDSADKAARFIRLCDA-FNIP-LVFLVDT-PGFMPGTD----------QEYGGIIKHGAKLLY 391 (526)
T ss_pred EEE-EecCccccccccchHHHHHHHHHHHhhhc-cCCC-eEEEeCC-CCCCCChh----------HHhChHHHhhhHHHh
Confidence 443 35666545678888888888888855544 3455 4555444 45888765 334457788999999
Q ss_pred HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh
Q psy9060 153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232 (366)
Q Consensus 153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~ 232 (366)
++.+...|.|..|-|.+.|||...+..-++- +.+ .|..|..++++.-+-|...
T Consensus 392 A~aeatVPkitvI~rkayGga~~~M~~~~~~------------~~~---------------~~AwP~a~iaVMG~egAv~ 444 (526)
T COG4799 392 AVAEATVPKITVITRKAYGGAYYVMGGKALG------------PDF---------------NYAWPTAEIAVMGPEGAVS 444 (526)
T ss_pred hHhhccCCeEEEEecccccceeeeecCccCC------------Cce---------------eEecCcceeeecCHHHHHH
Confidence 9999999999999999999987543322211 011 4555666666665555544
Q ss_pred HHhhh-c-CHHH-H---------HHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060 233 RLPKL-T-ALPN-V---------LDMTLTGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 233 ~l~r~-~-G~~~-a---------~~l~ltG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.+-+. + ...+ . +.--..-+..++--|.+.|++|.|.+|
T Consensus 445 i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p 494 (526)
T COG4799 445 ILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP 494 (526)
T ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH
Confidence 44431 1 1111 0 001112222456677889999999987
No 153
>KOG0840|consensus
Probab=82.54 E-value=12 Score=35.40 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=18.5
Q ss_pred cCCCcCHHHHHHcCCcceecCC
Q psy9060 249 TGKTLKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 249 tG~~~~a~eA~~~GLVd~vv~~ 270 (366)
.-+-++|+||++.||||+|...
T Consensus 236 Rd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 236 RDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred ccccCCHHHHHHhcchhhhhcC
Confidence 3455899999999999999963
No 154
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=82.41 E-value=2.4 Score=41.17 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhcCC---CccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060 91 EVMSEIQSILRRIQSDS---SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167 (366)
Q Consensus 91 ~~~~eL~~al~~~~~d~---~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G 167 (366)
....++.++|+.+.... .+-++||..|+|. + -||..|.+ ..+.+.|..++.|||++| |
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-~---eDL~~FN~--------------e~varai~~~~~PvisaI-G 115 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGS-I---EDLWAFND--------------EEVARAIAASPIPVISAI-G 115 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCC-h---HHhcccCh--------------HHHHHHHHhCCCCEEEec-C
Confidence 34678888888887654 5666777666542 1 24433322 357788999999999999 4
Q ss_pred ccchhHHHHHhhccEEEEecCC
Q psy9060 168 SCLGGGLEVALACHYRIAVKDK 189 (366)
Q Consensus 168 ~a~GgG~elalacD~ria~~~a 189 (366)
|-.-- .-.=+.+|+|..++++
T Consensus 116 He~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 116 HETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred CCCCc-hHHHHHHHhhCCCHHH
Confidence 43321 2344567888777764
No 155
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=80.60 E-value=3 Score=42.60 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccc
Q psy9060 89 NSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGS 168 (366)
Q Consensus 89 ~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~ 168 (366)
..+...++..+++.+...+++.++||..|+| ++ -||..|.+ ..+.+.+..||.|||.+| ||
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-s~---eDL~~Fn~--------------e~~~rai~~~~~Pvis~i-GH 228 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-SL---EDLWSFND--------------EKVARAIFLSKIPIISAV-GH 228 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-CH---HHhhhcCc--------------HHHHHHHHcCCCCEEEec-Cc
Confidence 3445678888898888766677666655544 21 24433322 357788999999999999 33
Q ss_pred cchhHHHHHhhccEEEEecCC
Q psy9060 169 CLGGGLEVALACHYRIAVKDK 189 (366)
Q Consensus 169 a~GgG~elalacD~ria~~~a 189 (366)
-.-- .-.=+.+|+|..++.+
T Consensus 229 e~D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 229 ETDF-TISDFVADLRAPTPSA 248 (432)
T ss_pred CCCc-cHHHHhhhccCCCcHH
Confidence 2211 2244667888888765
No 156
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=71.55 E-value=6.4 Score=40.12 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecccc
Q psy9060 90 SEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSC 169 (366)
Q Consensus 90 ~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a 169 (366)
.....++.++|+.+.... +.++||..|+| ++ -||..|.+ ..+.+.+.+|+.|||++| ||-
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii~RGGG-S~---eDL~~Fn~--------------e~v~~ai~~~~~Pvis~I-GHE 234 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIVARGGG-SL---EDLWAFND--------------EAVARAIAASRIPVISAV-GHE 234 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEEecCCC-CH---HHhhccCc--------------HHHHHHHHcCCCCEEEec-cCC
Confidence 334678888888887643 55566655544 11 24443322 357788999999999999 332
Q ss_pred chhHHHHHhhccEEEEecCC
Q psy9060 170 LGGGLEVALACHYRIAVKDK 189 (366)
Q Consensus 170 ~GgG~elalacD~ria~~~a 189 (366)
.-- .-.=+.+|+|..++++
T Consensus 235 ~D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 235 TDF-TIADFVADLRAPTPTA 253 (438)
T ss_pred CCc-cHHHHhhhccCCChHH
Confidence 211 2345667888888765
No 157
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=67.52 E-value=17 Score=34.95 Aligned_cols=73 Identities=22% Similarity=0.406 Sum_probs=46.6
Q ss_pred eCCEEEEEecCCCCCCCCCCHHHHHHHHH-----------------------HHHHhhcCCCccEEEEEeeCCCcEEcCC
Q psy9060 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQS-----------------------ILRRIQSDSSIRSAVIISGKPGCFIAGA 126 (366)
Q Consensus 70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~-----------------------al~~~~~d~~v~~vVl~~g~g~~F~aG~ 126 (366)
.++|++|.= ...++-++..++.+ +|+.+++||+.+++|+++--|+
T Consensus 145 ~G~IGiVSr------SGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG------ 212 (293)
T COG0074 145 PGNIGIVSR------SGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGG------ 212 (293)
T ss_pred CCceEEEec------CcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCC------
Confidence 577887632 24566666666554 8999999999998777532222
Q ss_pred CcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Q psy9060 127 DISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCL 170 (366)
Q Consensus 127 Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~ 170 (366)
+ .++.+ .+++.+ ....||+|+.+-|.+.
T Consensus 213 ~--------aEe~A-------A~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 213 P--------AEEEA-------AEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred c--------HHHHH-------HHHHHH-hccCCCEEEEEeccCC
Confidence 1 12222 233444 3445999999999876
No 158
>smart00250 PLEC Plectin repeat.
Probab=61.58 E-value=6.2 Score=25.80 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=17.0
Q ss_pred cCCCcCHHHHHHcCCcce
Q psy9060 249 TGKTLKADKAKKMGIVDQ 266 (366)
Q Consensus 249 tG~~~~a~eA~~~GLVd~ 266 (366)
+|++++-.||.+.||||.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 159
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=56.72 E-value=17 Score=37.07 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060 92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG 171 (366)
Q Consensus 92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G 171 (366)
-..++.++++.+.+..++.++||-.|+|. +.++-...+ ..+.+.+..+++|+|++| ||-.-
T Consensus 177 A~~eIv~aI~~an~~~~~DvlIVaRGGGS-------iEDLW~FNd-----------E~vaRAi~~s~iPvISAV-GHEtD 237 (440)
T COG1570 177 AAEEIVEAIERANQRGDVDVLIVARGGGS-------IEDLWAFND-----------EIVARAIAASRIPVISAV-GHETD 237 (440)
T ss_pred cHHHHHHHHHHhhccCCCCEEEEecCcch-------HHHHhccCh-----------HHHHHHHHhCCCCeEeec-ccCCC
Confidence 46789999999998888887665444331 222211111 246788999999999999 33321
Q ss_pred hHHHHHhhccEEEEecCC
Q psy9060 172 GGLEVALACHYRIAVKDK 189 (366)
Q Consensus 172 gG~elalacD~ria~~~a 189 (366)
- .-.=+.+|+|-.++++
T Consensus 238 ~-tL~DfVAD~RApTPTa 254 (440)
T COG1570 238 F-TLADFVADLRAPTPTA 254 (440)
T ss_pred c-cHHHhhhhccCCCchH
Confidence 0 1223457788777654
No 160
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=50.24 E-value=6.7 Score=26.72 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.0
Q ss_pred cCCCcCHHHHHHcCCcceec
Q psy9060 249 TGKTLKADKAKKMGIVDQLV 268 (366)
Q Consensus 249 tG~~~~a~eA~~~GLVd~vv 268 (366)
+|++++.++|.+.||||.-.
T Consensus 18 tg~~lsv~~A~~~glId~~~ 37 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDSDT 37 (45)
T ss_dssp TTEEEEHHHHHHTTSS-HHH
T ss_pred CCeEEcHHHHHHCCCcCHHH
Confidence 79999999999999998654
No 161
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=48.64 E-value=59 Score=31.92 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Q psy9060 95 EIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCL 170 (366)
Q Consensus 95 eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~ 170 (366)
.+.+.|+.+.+||+.+++++. +... . ..+.+..++. .. ....||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~-~E~g-----G--------~~e~~aa~fi-------~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILI-GEIG-----G--------TAEEEAAEWI-------KN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEE-EecC-----C--------chhHHHHHHH-------Hh-hcCCCcEEEEEecCCC
Confidence 345678888889998876654 4321 0 0112222222 22 2468999999999874
No 162
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=44.69 E-value=2.7e+02 Score=26.11 Aligned_cols=141 Identities=13% Similarity=0.209 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH---HHHHHHHHHHHHHHHcCCCC
Q psy9060 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV---KQISKSGQQILSEIESSPKP 160 (366)
Q Consensus 85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~kP 160 (366)
...+..+.-..|.+++.++-.+..=+-+|++-..+ ..++- .++. ++...+....+..-+...-|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~gr------------reEllGi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGR------------REELLGINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccch------------HHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence 46677776667776555444333334455443332 32322 2222 33333444555566677889
Q ss_pred EEEEeccccchhHH-HHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcC
Q psy9060 161 IVAAISGSCLGGGL-EVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA 239 (366)
Q Consensus 161 ~Iaav~G~a~GgG~-elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G 239 (366)
+|+.|.|.+++||| .-.+.+|..||-+++ ++-..+-. +..|..+ ..
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga-------------------------------~i~vM~~~-s~ARVTk-~~ 154 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRLIALPGA-------------------------------MIHVMGKP-SAARVTK-RP 154 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcchhcCCCC-------------------------------eeecCChH-HhHHHhh-cC
Confidence 99999999999997 557788877776643 22221111 2234433 24
Q ss_pred HHHHHHHHhcCCC--cCHHHHHHcCCcceecCC
Q psy9060 240 LPNVLDMTLTGKT--LKADKAKKMGIVDQLVEP 270 (366)
Q Consensus 240 ~~~a~~l~ltG~~--~~a~eA~~~GLVd~vv~~ 270 (366)
...-.++.-+--. ++.+--.++|.|+++.+.
T Consensus 155 ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 155 VEELEELAKSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred HHHHHHHhhcCCCcCCCHHHHHHhccHHHHhcc
Confidence 4444444444444 577888899999999974
No 163
>KOG3019|consensus
Probab=42.62 E-value=27 Score=32.82 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcce
Q psy9060 233 RLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQ 266 (366)
Q Consensus 233 ~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~ 266 (366)
-+..++|+.+|. ++|.|+++-++.|++.|+=-+
T Consensus 270 vvqA~fG~erA~-~vLeGqKV~Pqral~~Gf~f~ 302 (315)
T KOG3019|consen 270 VVQALFGPERAT-VVLEGQKVLPQRALELGFEFK 302 (315)
T ss_pred HHHHHhCcccee-EEeeCCcccchhHhhcCceee
Confidence 345567877775 889999999999999998543
No 164
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=40.94 E-value=28 Score=32.58 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhh
Q psy9060 5 LYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT 55 (366)
Q Consensus 5 ~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~ 55 (366)
..++...+...+......+.++++..|.+.|..+..+++.+..++.|...+
T Consensus 200 ~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr 250 (257)
T PRK05862 200 SLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKR 250 (257)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccC
Confidence 345666677788777778889999999999999999999999999886654
No 165
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=40.51 E-value=1.5e+02 Score=29.42 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=31.9
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP 119 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g 119 (366)
|-+..+.+-+ + .-++++.+..|.+.+++...++++.++||+.|..
T Consensus 72 i~~~~~~~id-S-~~mt~~dw~~la~~I~~~~~~~~~~GiVVtHGTD 116 (349)
T TIGR00520 72 IKGEQIVNVG-S-QDMNEEVLLKLAKGINELLASDDYDGIVITHGTD 116 (349)
T ss_pred EEEEEccCCC-c-ccCCHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence 3344444433 2 3488999999999998887777888988876653
No 166
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=39.09 E-value=34 Score=32.16 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhh
Q psy9060 8 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT 55 (366)
Q Consensus 8 Ap~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~ 55 (366)
+...+.+.+..+...++++++..|.+.|..+..+++.+..+..|+..+
T Consensus 207 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr 254 (261)
T PRK08138 207 ALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKR 254 (261)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 556667777777777888999999999999999999999999887654
No 167
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=37.45 E-value=57 Score=28.44 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060 95 EIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG 171 (366)
Q Consensus 95 eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G 171 (366)
...++|+.+.+||+++++++ -+..+.= ..++.+..+.+.+...-. ....+|+|+.|.|...-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlv-d~~~G~g------------~~~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILV-DIVGGIG------------SCEDPAAGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEE-EEESSSS------------SHHHHHHHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEE-EeccccC------------chHHHHHHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 55677888889999997554 3332210 112233333322221111 34679999999998765
No 168
>KOG0540|consensus
Probab=37.13 E-value=3e+02 Score=28.47 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=64.5
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcC
Q psy9060 78 LDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESS 157 (366)
Q Consensus 78 lnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (366)
-|+|.-....|..+.-..-.+.++...+ ..+- +|++...++ |-.|.+.+ ...+.+.+..++......
T Consensus 355 gnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IP-Li~l~ni~G-fm~g~~~e----------~~gIaK~gAklv~a~a~a 421 (536)
T KOG0540|consen 355 GNNPKFAGGVLFSESAVKGARFIELCDQ-RNIP-LIFLQNITG-FMVGRAAE----------AGGIAKHGAKLVYAVACA 421 (536)
T ss_pred ccCchhcccccchhhhhhhHHHHHHHHh-cCCc-EEEEEccCC-ccccchhh----------hhchhhhhhhhhhhhhhc
Confidence 3444322345665555666666666554 3455 455555554 88877643 344567778888888888
Q ss_pred CCCEEEEeccccchhHHH---HHhhccEEEEecCC
Q psy9060 158 PKPIVAAISGSCLGGGLE---VALACHYRIAVKDK 189 (366)
Q Consensus 158 ~kP~Iaav~G~a~GgG~e---lalacD~ria~~~a 189 (366)
..|-|..|.|.+.||-.. -++.-|+.++-+++
T Consensus 422 kvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A 456 (536)
T KOG0540|consen 422 KVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNA 456 (536)
T ss_pred cCceEEEEecCccCCcccccccccCCceeEEcccc
Confidence 999999999999997655 24455666666554
No 169
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=36.70 E-value=1.2e+02 Score=30.30 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC
Q psy9060 86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK 118 (366)
Q Consensus 86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~ 118 (366)
.-|+++.+..|.+.+.+.-.+.++.++||+.|.
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItHGT 110 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITHGT 110 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeCCC
Confidence 458999999999999999888888888886654
No 170
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=36.46 E-value=1.3e+02 Score=29.39 Aligned_cols=33 Identities=9% Similarity=0.195 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC
Q psy9060 87 SLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP 119 (366)
Q Consensus 87 al~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g 119 (366)
-++++.+.+|.+.+++..+++++.++||+.|..
T Consensus 56 ~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTD 88 (323)
T smart00870 56 NMTPADWLKLAKRINEALADDGYDGVVVTHGTD 88 (323)
T ss_pred cCCHHHHHHHHHHHHHHhccCCCCEEEEecCCc
Confidence 388999999999998876667788988876653
No 171
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=32.73 E-value=52 Score=30.74 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhh
Q psy9060 8 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT 55 (366)
Q Consensus 8 Ap~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~ 55 (366)
+...+.+.+..+...+.++++..|...|..+..+++++..+..|+..+
T Consensus 203 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr 250 (257)
T PRK07658 203 TTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKR 250 (257)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 445567777777677889999999999999999999999998886543
No 172
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=32.03 E-value=1.2e+02 Score=25.79 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Q psy9060 95 EIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCL 170 (366)
Q Consensus 95 eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~ 170 (366)
.+.+.++.+.+||+.+++++. -.+ + .+. +.+.+..++.... ||||+..-|..-
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly-~E~--~------------~d~-------~~f~~~~~~a~~~-KPVv~lk~Grt~ 93 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLY-LEG--I------------GDG-------RRFLEAARRAARR-KPVVVLKAGRTE 93 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEE-ES----------------S-H-------HHHHHHHHHHCCC-S-EEEEE-----
T ss_pred CHHHHHHHHhcCCCCCEEEEE-ccC--C------------CCH-------HHHHHHHHHHhcC-CCEEEEeCCCch
Confidence 467888899999999975543 322 1 111 2334555555555 999999999743
No 173
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.01 E-value=5e+02 Score=25.17 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=58.9
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchh-hhcCCHHHHHHHH---------
Q psy9060 75 VVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML-AACKTADQVKQIS--------- 144 (366)
Q Consensus 75 ~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~-~~~~~~~~~~~~~--------- 144 (366)
++.++.. .|-++.+.+....+++...--.+.-++.|++.|..+.|.---|.... .+. -...+.
T Consensus 131 ilpi~Gs---~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~----l~k~l~~~g~~~lis 203 (329)
T COG3660 131 ILPINGS---PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASL----LVKILENQGGSFLIS 203 (329)
T ss_pred eeeccCC---CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHH----HHHHHHhCCceEEEE
Confidence 4455542 36678888888888887775555556778888888877653332111 000 000000
Q ss_pred --HHHHHHH-HHHHc-CCCCEEEEeccccch--hHHHHHhhccEEEEecCC
Q psy9060 145 --KSGQQIL-SEIES-SPKPIVAAISGSCLG--GGLEVALACHYRIAVKDK 189 (366)
Q Consensus 145 --~~~~~~~-~~i~~-~~kP~Iaav~G~a~G--gG~elalacD~ria~~~a 189 (366)
+..-+.. ..|.+ ++--.+..-++.-.| --+.+..++||+|++.|+
T Consensus 204 fSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDS 254 (329)
T COG3660 204 FSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADS 254 (329)
T ss_pred eecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecch
Confidence 0000111 11211 333445566766333 346778889999999886
No 174
>PRK11096 ansB L-asparaginase II; Provisional
Probab=28.45 E-value=2.7e+02 Score=27.65 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=29.1
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC
Q psy9060 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP 119 (366)
Q Consensus 73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g 119 (366)
|-+..+.+-+ + .-++++-+.+|.+.+++ .++++.++||++|..
T Consensus 69 i~~~~~~~~d-S-~~~t~~~~~~l~~~i~~--~~~~~dGiVVtHGTD 111 (347)
T PRK11096 69 VKGEQVVNIG-S-QDMNDEVWLTLAKKINT--DCDKTDGFVITHGTD 111 (347)
T ss_pred EEEEEcccCC-c-ccCCHHHHHHHHHHHHH--hcCCCCEEEEeCCCc
Confidence 4445554433 2 34888888899999987 356788888876653
No 175
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=27.81 E-value=65 Score=30.15 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhh
Q psy9060 8 APLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT 55 (366)
Q Consensus 8 Ap~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~ 55 (366)
+...+.+.+..+...+.++++..|...|..+..+|+.+..+..|+..+
T Consensus 207 ~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r 254 (260)
T PRK07511 207 ALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKR 254 (260)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccC
Confidence 444556677777777889999999999999999999999998886654
No 176
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=25.96 E-value=76 Score=29.69 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhh
Q psy9060 7 PAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT 55 (366)
Q Consensus 7 PAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~ 55 (366)
++...+.+.+..+...+.++++..|.+.+..+..+++++..+..|...+
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r 253 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKR 253 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 3556667778777777889999999999999999999999988886554
No 177
>KOG1255|consensus
Probab=25.83 E-value=1.7e+02 Score=27.72 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Q psy9060 95 EIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCL 170 (366)
Q Consensus 95 eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~ 170 (366)
.+.++|+.+.+|+..+++|++.--|+. .++++.++.+. .. -..-+||||+.|.|...
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIGG~--------------AEe~AA~flk~---~n--Sg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIGGS--------------AEEEAAEFLKE---YN--SGSTAKPVVSFIAGVTA 274 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccCCh--------------hhHHHHHHHHH---hc--cCCCCCceeEEeecccC
Confidence 567788889999999998876433321 12333222221 11 12468999999998654
No 178
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=24.98 E-value=83 Score=29.34 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhh
Q psy9060 10 LKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQT 55 (366)
Q Consensus 10 ~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~ 55 (366)
..+-..+..+...++++++..|.+.|.++..+++++..++.|+..+
T Consensus 207 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~ 252 (259)
T PRK06688 207 RYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKR 252 (259)
T ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 3345666666677889999999999999999999999998886643
No 179
>PLN02522 ATP citrate (pro-S)-lyase
Probab=23.00 E-value=2.4e+02 Score=30.34 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCccEEEEEeeC-CCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Q psy9060 96 IQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCL 170 (366)
Q Consensus 96 L~~al~~~~~d~~v~~vVl~~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~ 170 (366)
+.+.++.+.+||+.+++++. +. |. . ++. .+.+..++.. ..||||+.+-|.+.
T Consensus 210 ~~D~L~~~~~Dp~Tk~Ivly-gEiGg--~------------~e~-------~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVL-GELGG--R------------DEY-------SLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEE-EecCc--h------------hHH-------HHHHHHHHhc-CCCCEEEEeccCCC
Confidence 56678888888888876654 44 31 0 111 1122223222 68999999999876
No 180
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.58 E-value=3.7e+02 Score=21.22 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=32.9
Q ss_pred eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCC--------ccEEEE
Q psy9060 65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSS--------IRSAVI 114 (366)
Q Consensus 65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~--------v~~vVl 114 (366)
+..+..+++.+++++.| ++....+.+.+.+........ ++.+|+
T Consensus 2 ~~~~~~~~v~ii~~~g~------l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIl 53 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP------LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVIL 53 (117)
T ss_dssp CEEEEETTEEEEEEESE------ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEE
T ss_pred CeeEEECCEEEEEEeeE------EEHHHHHHHHHHHHHhhhcccccccccccceEEEE
Confidence 35677899999999764 666778888888888776654 676555
Done!