RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9060
(366 letters)
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 369 bits (949), Expect = e-122
Identities = 166/290 (57%), Positives = 207/290 (71%), Gaps = 23/290 (7%)
Query: 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
+ H + GDV VV +DSP KVN+L+ E+ +E + ++ + ++ +I+SAV+ISGKPG
Sbjct: 11 ARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPG 70
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
F+AGADI M+AACKTA +V Q+S+ GQ++ IE S KPIVAAISGSCLGGGLE+ALAC
Sbjct: 71 SFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALAC 130
Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
HYRIA KD+KT LGLPEVMLGLLPGAGGTQRLPKLT +
Sbjct: 131 HYRIA----------------------TKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV 168
Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
P LDM LTGK ++AD+AKKMGIVDQLV+PLGPGL EE T+EYLEEVAV A LA+G
Sbjct: 169 PAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228
Query: 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
KL INR K ++ K+ + FVR Q++ A++KVMK + GLYPAPLK
Sbjct: 229 KLSINRDKGLV-HKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLK 277
Score = 100 bits (251), Expect = 3e-23
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 2 SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 60
+ GLYPAPLKILDVVRTG ++GP AGYEAE++ F +L+MT +SK L+GLF QT+CKKN
Sbjct: 268 TKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKN 326
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 267 bits (685), Expect = 1e-83
Identities = 118/278 (42%), Positives = 167/278 (60%), Gaps = 43/278 (15%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
+ V+T+D PG K+N+L +E ++++IL++++ D ++ V ISGKP FIAGADI+MLA
Sbjct: 16 IAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLA 75
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
ACKTA + + +++ GQQ+ +EIE+ P P+VAAI G+CLGGGLE+ALACHYR+
Sbjct: 76 ACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVC------- 128
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
D KT LGLPEV LGLLPG+GGTQRLP+L + LDM LTGK
Sbjct: 129 ---------------TDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQ 173
Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIP 312
L+A +A K+G+VD +V P L EVAV A K K R +
Sbjct: 174 LRAKQALKLGLVDDVV---------PH----SILLEVAVELAK-----KGKPARRPLPVR 215
Query: 313 DKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
+++L+ R +F +A++K + + G YPAP +
Sbjct: 216 ERLLE---GNPLGRALLFKQARKKTLAKTQGNYPAPER 250
Score = 92.3 bits (230), Expect = 2e-20
Identities = 41/73 (56%), Positives = 50/73 (68%)
Query: 3 GGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNST 62
G YPAP +ILDVVRTG+EKG S+GYEAEA F +LAMTP+S L +F A TE KK++
Sbjct: 242 QGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTG 301
Query: 63 KHFKEKAVGDVLV 75
K + V V V
Sbjct: 302 SDAKPRPVNKVGV 314
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 218 bits (557), Expect = 4e-65
Identities = 112/276 (40%), Positives = 159/276 (57%), Gaps = 43/276 (15%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
+ ++T+D PG K+N+L +E ++ IL +++ D SIR V++SGKP FIAGADISMLA
Sbjct: 11 IAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLA 70
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
AC+TA + K +++ GQ + +E+E+ P P+VAAI G+CLGGGLE+ALACH R+
Sbjct: 71 ACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVC------- 123
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
D KT LGLPEV LGLLPG+GGTQRLP+L + LDM LTGK
Sbjct: 124 ---------------SDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQ 168
Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIP 312
L+A +A K+G+VD +V P + ++TA ++A I + +
Sbjct: 169 LRAKQALKLGLVDDVV-PQ----------------SILLDTAVEMALKGKPIRKPLSLQE 211
Query: 313 DKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 348
+ L R +F +A +K K + G YPA
Sbjct: 212 RLLEGTPLG----RALLFDQAAKKTAKKTQGNYPAA 243
Score = 72.5 bits (178), Expect = 7e-14
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 4 GLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61
G YPA +ILDVVR G+ +G G +AEA F +L MTP+S L +F A TE KK +
Sbjct: 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKET 295
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 188 bits (480), Expect = 4e-58
Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 56/284 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V V+ LD P VN+L++E+++E+ L +++ D S++ A++++G PG F AGADI
Sbjct: 6 AGVAVIKLDRPE-AVNALSAELLTELIQALEKLEQDPSVK-AIVLTGGPGAFSAGADIKE 63
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+AA A Q Q S Q + S +E PKP++AA++G LGGGLE+ALAC YRIA + K
Sbjct: 64 MAAEPLAQQ-AQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
GLPEV LG++PGAGGTQRLP++ + L+M LTG
Sbjct: 123 ------------------------FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTG 158
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRIKP 309
+ ++A +A KMG+VD++V PEE+ L E A+ A +LA L + +K
Sbjct: 159 RRIRAQEALKMGLVDKVV---------PEEQ----LVEEAIELAQRLADKPPLALAALKA 205
Query: 310 MIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQ 353
+ A +V + LYPAP +
Sbjct: 206 AM---------------RAALEDALPEVRAQALRLYPAPFSTDD 234
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 181 bits (461), Expect = 5e-56
Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 32/220 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V +TL+ P K N+L+ E++ E+ + L ++D +R V+++G F AGAD+
Sbjct: 7 GGVATITLNRPE-KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKE 64
Query: 131 LAACKTA-DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
LAA A ++ + + Q++L + PKP++AA++G+ LGGGLE+ALAC RIA +D
Sbjct: 65 LAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED- 123
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
GLPEV LGL+PG GGTQRLP+L ++ LT
Sbjct: 124 -----------------------AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLT 160
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV 289
G+ + A++A ++G+VD++V +E +
Sbjct: 161 GRRISAEEALELGLVDEVVPD-----EELLAAALELARRL 195
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 178 bits (453), Expect = 5e-54
Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 32/277 (11%)
Query: 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
+ + + V+TL+ P N+LN E++ E+ L ++D +R V+++G
Sbjct: 4 YETILVEREDGIAVITLNRPEKL-NALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKA 61
Query: 122 FIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACH 181
F AGAD+ L + + + + + + GQ +L + PKP++AA++G LGGGLE+ALAC
Sbjct: 62 FSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACD 121
Query: 182 YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALP 241
RIA +D K GLPEV LGLLPG GGTQRLP+L
Sbjct: 122 IRIAAEDAK------------------------FGLPEVNLGLLPGDGGTQRLPRLLGRG 157
Query: 242 NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
++ LTG+ + A +A ++G+VD++V ER +E +A + LA+ K
Sbjct: 158 RAKELLLTGEPISAAEALELGLVDEVVPDAE----ELLERALELARRLAAPPLA-LAATK 212
Query: 302 LKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVM 338
+ + L+ F R +E V
Sbjct: 213 RLVRAALEADLAEALEAEAL-AFARLFSSEDFREGVR 248
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 150 bits (380), Expect = 3e-43
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 40/237 (16%)
Query: 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
K + V V+TL+ P N+L+S+V+ E+ +L +++ D ++R V+I G+ F
Sbjct: 2 KFLSVRVEDHVAVITLNHP--PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFF 58
Query: 123 IAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
AGADI + A+Q ++++ GQ +E KP++AAI G+ LGGGLE+A++CH
Sbjct: 59 SAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHI 118
Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
R A + K LGLPE+ LGL+PG GTQRLP+
Sbjct: 119 RFATESAK------------------------LGLPELNLGLIPGFAGTQRLPRYVGKAK 154
Query: 243 VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
L+M LT + + +A K G+V+ + PEE L++ A A ++A
Sbjct: 155 ALEMMLTSEPITGAEALKWGLVNGV---------FPEE---TLLDD-AKKLAKKIAG 198
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 143 bits (364), Expect = 6e-38
Identities = 83/282 (29%), Positives = 123/282 (43%), Gaps = 74/282 (26%)
Query: 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI----SMLAACKTADQV 140
VN L+ ++ + L +++ S ++ ++ S K FI GADI S+ AA +++
Sbjct: 28 VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKD-AFIVGADITEFLSLFAA--PEEEL 84
Query: 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVAL 200
Q I + +E P P VAAI+G LGGG E LA YR+A
Sbjct: 85 SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVA--------------- 129
Query: 201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKK 260
+GLPE LG++PG GGT RLP+L N L+ GK ++A+ A K
Sbjct: 130 ---------SPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALK 180
Query: 261 MGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK-------------LKINRI 307
+G VD +V P E L+E A+ Q +GK LK+++I
Sbjct: 181 VGAVDAVVAP-------------EKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKI 227
Query: 308 KPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPL 349
+ M+ F AK V + +G YPAP+
Sbjct: 228 EAMM-----------------SFTTAKGMVAQKAGKHYPAPM 252
Score = 44.1 bits (105), Expect = 8e-05
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 6 YPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHF 65
YPAP+ + + G E EA+GF +LA T ++ L+G+F K + K
Sbjct: 248 YPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL- 306
Query: 66 KEKAVGDV 73
K V
Sbjct: 307 -AKDAKPV 313
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 131 bits (331), Expect = 5e-36
Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 33/235 (14%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISML 131
V+ +TL+ P N+L+ ++ E+Q+IL +I ++++R VI++G F AGAD+
Sbjct: 14 VVKITLNRPR-AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKER 71
Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
A +QV+ + + +E P+P++AAI+G LGGGLE+ALAC +RIA +
Sbjct: 72 AGMNE-EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES--- 127
Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
LGL E L ++PGAGGTQRLP+L + ++ TG+
Sbjct: 128 ---------------------ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGR 166
Query: 252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
+ A +AK++G+V+ +V + EE+ +E E++A N + K I+
Sbjct: 167 RISAQEAKEIGLVEFVVPA-----HLLEEKAIEIAEKIASNGPIAVRQAKEAISN 216
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 124 bits (314), Expect = 2e-33
Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 26/200 (13%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G + VVT++ P +N+LNSE + E+ ++L I++D ++ + ++ F+AGADIS
Sbjct: 12 GHIAVVTINRPKA-LNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISE 70
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ ++ ++ G ++ ++E+ KP++AAI+G LGGG E+++AC RIA + K
Sbjct: 71 MKD-LNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAK 129
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
G PEV LG+ PG GGTQRL ++ ++ TG
Sbjct: 130 ------------------------FGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTG 165
Query: 251 KTLKADKAKKMGIVDQLVEP 270
+ A++A ++G+V+++VEP
Sbjct: 166 DMINAEEALRIGLVNKVVEP 185
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 121 bits (305), Expect = 3e-32
Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
VL +T++ P K N+L + + + L +D ++R V+++G F AG DI
Sbjct: 13 DGVLTITINRPD-KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIK- 69
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
K + + L I + PKP+VAA++G +G G+ +ALAC A + K
Sbjct: 70 -DFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAK 128
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
LP LGL P AGG+ LP+L +M L G
Sbjct: 129 ------------------------FSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLG 164
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ L A++A ++G+V+++V L+ A A++LA+G
Sbjct: 165 EPLSAEEALRIGLVNRVVPA-------------AELDAEADAQAAKLAAG 201
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 116 bits (292), Expect = 2e-30
Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 38/224 (16%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
VL++TL+ P + N+LN+ +++++ + L +D+SI +I+G F AGAD++ +A
Sbjct: 12 VLLLTLNRPEAR-NALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMA 69
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
D ++ Q+ +++ KP++AA++G LG G E+AL C IA ++ +
Sbjct: 70 ---EKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENAR-- 124
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
GLPE+ LG++PGAGGTQRL + M LTG++
Sbjct: 125 ----------------------FGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGES 162
Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 296
+ A +A++ G+V ++ P E T+E ++A A
Sbjct: 163 ITAQQAQQAGLVSEV---------FPPELTLERALQLASKIARH 197
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 114 bits (288), Expect = 8e-30
Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 29/200 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V ++TL+ P +N+LN +M E+ + L +D I A++I+G F AGADI
Sbjct: 12 GRVGLITLNRPKA-LNALNDALMDELGAALAAFDADEGI-GAIVITGSEKAFAAGADIKE 69
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+A D K + + ++ I KP++AA++G LGGG E+A+ C IA K
Sbjct: 70 MADLSFMDVYKGDYITNWEKVARIR---KPVIAAVAGYALGGGCELAMMCDIIIAADTAK 126
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
G PE+ LG+LPG GG+QRL + +D+ LTG
Sbjct: 127 ------------------------FGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTG 162
Query: 251 KTLKADKAKKMGIVDQLVEP 270
+ + A +A++ G+V ++V
Sbjct: 163 RMMDAAEAERAGLVSRVVPA 182
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 112 bits (281), Expect = 6e-29
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
++ + LD P K N++ E++ ++S +IQ+D+S R ++ S PG F AGAD+
Sbjct: 5 IVELRLDRPEAK-NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
++ V++ S + S +E+ P +A + G+ LGGGLE+AL+C RI ++
Sbjct: 64 KMSPSE-VQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAV-- 120
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
GLPE L ++PGAGGTQRLP+L ++ TG+
Sbjct: 121 ----------------------FGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRR 158
Query: 253 LKADKAKKMGIVDQLV 268
+ A +A MG+V+ V
Sbjct: 159 IGAREAASMGLVNYCV 174
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 112 bits (281), Expect = 7e-29
Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 34/224 (15%)
Query: 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
G V + L+ P K N+LN +++ +++ R+ +R AV++ G+ F AG D+S
Sbjct: 9 DGGVATIGLNRPA-KRNALNDGLIAALRAAFARLPEG--VR-AVVLHGEGDHFCAGLDLS 64
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
L + A + S+ ++ +I+ P++AA+ G+ +GGGLE+A A H R+A
Sbjct: 65 ELRE-RDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVA---- 119
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
D+ T LPE G+ G GG+ R+P+L + + DM LT
Sbjct: 120 --------------------DESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLT 159
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 293
G+ A + +++G+ LV G L ++ ME +A N
Sbjct: 160 GRVYDAQEGERLGLAQYLVPA-GEAL----DKAMELARRIAQNA 198
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 112 bits (281), Expect = 9e-29
Identities = 76/262 (29%), Positives = 121/262 (46%), Gaps = 46/262 (17%)
Query: 72 DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
V ++ L+ P + N+LN EV ++ + D IR A++++G F AGADI
Sbjct: 17 GVALLRLNRPEAR-NALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEF 74
Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
A + + + ++ I PKP++AA++G LGGG E
Sbjct: 75 ATAGAIEMYLRHT---ERYWEAIAQCPKPVIAAVNGYALGGGCE---------------- 115
Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
LA H I+V + G PE+ +GL+PGAGGTQRL + + M LTG
Sbjct: 116 --------LAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGC 167
Query: 252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKPM 310
+ A +A +G+V ++VE +E+T+ A+ A ++A L + +IK +
Sbjct: 168 MVPAPEALAIGLVSEVVE---------DEQTLPR----ALELAREIARMPPLALAQIKEV 214
Query: 311 I---PDKVLDVALKFEFVRNQI 329
+ D LD AL E Q+
Sbjct: 215 VLAGADAPLDAALALERKAFQL 236
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 112 bits (283), Expect = 3e-27
Identities = 80/277 (28%), Positives = 121/277 (43%), Gaps = 53/277 (19%)
Query: 79 DSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA--CKT 136
D+PG VN + ++ + L I++ SS++ ++ SGK FI GADI+
Sbjct: 23 DAPG-SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALP 80
Query: 137 ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLP 196
++ Q I +++E P P VAAI+G LGGG E LA +RIA
Sbjct: 81 DAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIA----------- 129
Query: 197 EVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKAD 256
D +GLPE LG++PG GGT RLP++ N L+ +GK +A+
Sbjct: 130 -------------DDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAE 176
Query: 257 KAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL--KINRIKPMIPDK 314
A K+G VD +V + L A+ +GKL K R + P K
Sbjct: 177 DALKVGAVDAVVTA-------------DKLGAAALQLLKDAINGKLDWKAKRQPKLEPLK 223
Query: 315 V--LDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPL 349
+ ++ + F + + A G YPAP+
Sbjct: 224 LSKIEAMMSFTTAKGMVAQVA--------GPHYPAPM 252
Score = 42.1 bits (99), Expect = 4e-04
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 2 SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61
+G YPAP+ + + G E EA+GF +LA T ++K L+GLF K +
Sbjct: 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKA 303
Query: 62 TKHFK 66
K K
Sbjct: 304 KKADK 308
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 104 bits (262), Expect = 5e-26
Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 30/204 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
+ ++TL+ P K+N+LN ++ + + L I+ D S+R AVI++G F AGADI
Sbjct: 11 DGIALLTLNRPE-KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIH 68
Query: 130 MLA---ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
+ A ++ + GQ + + +E+ PKP++AA++G GGG E+ A H IA
Sbjct: 69 EFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIAS 128
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
+ PE+ LG+ P GGTQRLP+L L++
Sbjct: 129 ERAL------------------------FAKPEIRLGMPPTFGGTQRLPRLAGRKRALEL 164
Query: 247 TLTGKTLKADKAKKMGIVDQLVEP 270
LTG A++A ++G+V+ +V
Sbjct: 165 LLTGDAFSAERALEIGLVNAVVPH 188
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 97.1 bits (242), Expect = 3e-23
Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 41/230 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G +L +TLD P K N+++++ + + + D +R A+I F AG D+
Sbjct: 11 GSILEITLDRP--KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKA 68
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A + D G L+EI KP++AA++G GGG E+ALA +
Sbjct: 69 AAEGEAPD--ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADF-------- 118
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
IV D + LPE LG++P +GG RLPK +M +TG
Sbjct: 119 ---------------IVCADNAS-FALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTG 162
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ + A++A + GIV+++V P+ M+ E+ A QL +
Sbjct: 163 RRMDAEEALRWGIVNRVV---------PQAELMDRAREL----AQQLVNS 199
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 94.9 bits (237), Expect = 2e-22
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 41/241 (17%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
+ V L+ P K+N+L+ + E+ + ++R++ D IR AVI+SG+ G F AG D+ +A
Sbjct: 13 IADVRLNRPD-KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVA 70
Query: 133 ACKTADQVKQISK-------SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
+ + VK + K Q++ P P++AA+ G C GGGL++AL RIA
Sbjct: 71 S-SPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIA 129
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
D K L + E GL+P GT L L +
Sbjct: 130 APDTK------------------------LSIMEAKWGLVPDMAGTVSLRGLVRKDVARE 165
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305
+T T + A++A ++G+V + + P + E+A + +A+ K IN
Sbjct: 166 LTYTARVFSAEEALELGLVTHVSD-------DPLAAALALAREIAQRSPDAIAAAKRLIN 218
Query: 306 R 306
R
Sbjct: 219 R 219
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 94.8 bits (236), Expect = 2e-22
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 39/242 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
G + +T ++P + N+++ ++ + L + D +IR V+++G F++GADIS
Sbjct: 19 GGLGRITFNNPA-RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADIS 76
Query: 130 MLAACKTADQV----KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
++ + +Q ++ Q L++ KP +A I G C+GGG+ +ALAC RIA
Sbjct: 77 QFEESRSDAEAVAAYEQAVEAAQAALAD---YAKPTIACIRGYCIGGGMGIALACDIRIA 133
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
+D + G+P LGL G G + L L D
Sbjct: 134 AEDSR------------------------FGIPAARLGLGYGYDGVKNLVDLVGPSAAKD 169
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305
+ T + A +A ++G+V ++ + E +Y +A N L + K I
Sbjct: 170 LFYTARRFDAAEALRIGLVHRVTAA-----DDLETALADYAATIAGNAPLTLRAAKRAIA 224
Query: 306 RI 307
+
Sbjct: 225 EL 226
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 94.3 bits (235), Expect = 3e-22
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 33/202 (16%)
Query: 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
G VL++T++ P + N++N+ V + + L + +D + I++G G F AG D+
Sbjct: 10 RGRVLIITINRPEAR-NAVNAAVAQGLAAALDELDADPDLSVG-ILTGAGGTFCAGMDL- 66
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSP-KPIVAAISGSCLGGGLEVALACHYRIAVKD 188
K + ++ S G+ E P KP++AA+ G L GG E+ALAC +A +D
Sbjct: 67 -----KAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARD 121
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
K GLPEV GL+ GG RLP+ +++ L
Sbjct: 122 AK------------------------FGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELAL 157
Query: 249 TGKTLKADKAKKMGIVDQLVEP 270
TG L A++A ++G+V++L EP
Sbjct: 158 TGDMLTAERAHELGLVNRLTEP 179
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 93.1 bits (232), Expect = 7e-22
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 35/213 (16%)
Query: 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
+ G V ++TL++P N+ ++ + ++ ++ + +D + + VI
Sbjct: 1 MMIELDLEIDGHVAILTLNNP--PANTWTADSLQALKQLVLELNADKDVYALVITGDGEK 58
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSE-IE--SSPKPI-VAAISGSCLGGGLEV 176
F AGAD+++ A D K +++ + E E S+ + + +AAI+G +GGGLE
Sbjct: 59 FFSAGADLNLFA-----DGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLEC 113
Query: 177 ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK 236
ALAC RIA +++ + LPE +GLLP AGGTQ LP
Sbjct: 114 ALACDIRIA------------------------EEQAQMALPEASVGLLPCAGGTQNLPW 149
Query: 237 LTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269
L M L G+ + A A ++G+V+++VE
Sbjct: 150 LVGEGWAKRMILCGERVDAATALRIGLVEEVVE 182
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 92.7 bits (231), Expect = 1e-21
Identities = 63/230 (27%), Positives = 99/230 (43%), Gaps = 39/230 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
G + +T + P + N++ + + I I +D SIR AV++ G F+AG DI+
Sbjct: 16 GGIARITFNRPAAR-NAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIA 73
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
A TA+ + ++L +E P +AAI+G+C+GGG +A AC RIA
Sbjct: 74 QFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSA 133
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
+ G P +A +T LG RL L V DM T
Sbjct: 134 R--FGFP-IA------------RT--------LGNCLSMSNLARLVALLGAARVKDMLFT 170
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
+ L+A++A G+V+++VE L+ A A LA+
Sbjct: 171 ARLLEAEEALAAGLVNEVVED-------------AALDARADALAELLAA 207
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 91.6 bits (228), Expect = 2e-21
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 76 VTLDSPGV---------KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
VT D GV +N L + V+ + LR + +D +R V+ FI GA
Sbjct: 10 VTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGA 69
Query: 127 DISMLAACKTADQVKQISKSGQQILSE-IESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
DI +A A IS+ L + + P P++A I G CLGGGLE+A AC RIA
Sbjct: 70 DIKEMATLDQASAEAFISRLRD--LCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIA 127
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
D + G+PEV +G+P V+ L LP+L
Sbjct: 128 AHDAQ--FGMPEVR---------------VGIPSVIHAAL--------LPRLIGWARTRW 162
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEP 270
+ LTG+T+ A +A G+VD++V
Sbjct: 163 LLLTGETIDAAQALAWGLVDRVVPL 187
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 90.9 bits (226), Expect = 4e-21
Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 29/200 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V +VTL+ P V +N+L+ + E++ + +D A++ F AG D+
Sbjct: 12 GHVTIVTLNRPEV-MNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKE 70
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
AA +SG L+ KPI+AA++G +GGG E+ALAC
Sbjct: 71 QAAGGKRG----WPESGFGGLTSRFDLDKPIIAAVNGVAMGGGFELALACDL-------- 118
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
IV + T LPE +GL AGG RLP+ L + M LTG
Sbjct: 119 ---------------IVAAENAT-FALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTG 162
Query: 251 KTLKADKAKKMGIVDQLVEP 270
+ + A + ++G V+++V
Sbjct: 163 RRVTAREGLELGFVNEVVPA 182
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 85.8 bits (213), Expect = 3e-19
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 36/206 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V VTL+ PG K N++N SE+ I R + +D +R AV++SG F G D+
Sbjct: 14 DHVAQVTLNRPG-KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPA 71
Query: 131 LAAC----------KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
+A + +++ Q ++ + KP++AA+ G C+GGG+++ AC
Sbjct: 72 MAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISAC 131
Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
R A D K + EV LG++ G QRLP++
Sbjct: 132 DMRYASADAK------------------------FSVREVDLGMVADVGSLQRLPRIIGD 167
Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQ 266
++ ++ LTG+ + A +A+K+G+V++
Sbjct: 168 GHLRELALTGRDIDAAEAEKIGLVNR 193
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 84.8 bits (210), Expect = 7e-19
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 41/228 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G L+VT++ P + N+L++E++ + R+ +D IRS I++G G F AG D+
Sbjct: 13 GHTLIVTMNRPEAR-NALSTEMLRIMVDAWDRVDNDPDIRSC-ILTGAGGAFCAGMDLKA 70
Query: 131 LAACKTADQVKQISKSGQQILSEIE------SSPKPIVAAISGSCLGGGLEVALACHYRI 184
D K G S I+ KP++AA+ G + GG E+ R+
Sbjct: 71 ATKKPPGDSFK----DGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRV 126
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
A + K G+ E L P G RL +
Sbjct: 127 AGESAK------------------------FGISEAKWSLFPMGGSAVRLVRQIPYTVAC 162
Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
D+ LTG+ + A +AK++G++ +V P G L ++ +E E + N
Sbjct: 163 DLLLTGRHITAAEAKEIGLIGHVV-PDGQAL----DKALELAELINAN 205
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 84.7 bits (210), Expect = 9e-19
Identities = 78/270 (28%), Positives = 123/270 (45%), Gaps = 52/270 (19%)
Query: 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
G LV+TL +PG + N+L+ ++ + L + D SIR AV+++G G F AG +++
Sbjct: 10 EGSTLVLTLSNPGAR-NALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLN 67
Query: 130 MLAACKTADQVKQISKSGQ--QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
L + Q + + I + PKP++AA+ G+ G G +ALAC +A +
Sbjct: 68 RLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAAR 127
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL--D 245
D K Y V +GL P GG+ L + ALP L +
Sbjct: 128 DAK---------FVMAY---------------VKVGLTPDGGGSWFLAR--ALPRQLATE 161
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-I 304
+ L GK + A++ +G+V++L EP G L A+ A QLA+G +
Sbjct: 162 LLLEGKPISAERLHALGVVNRLAEP-GQALAE------------ALALADQLAAGSPNAL 208
Query: 305 NRIKPMI---PDKVLDVALKFE---FVRNQ 328
RIK +I P+ L L+ E FV +
Sbjct: 209 ARIKSLIADAPEATLAAQLEAERDHFVASL 238
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 84.4 bits (209), Expect = 1e-18
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 40/231 (17%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
V V+TL+ P ++N+ + +E+ + + R ++D ++R ++++G F AGAD+ L
Sbjct: 16 VAVITLNRPD-RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQ 73
Query: 133 AC-----KTADQVKQISK----SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
+ V+ Q + + KP++AAI+G+C G GL AL C R
Sbjct: 74 TIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVR 133
Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
A K A R GL+ G + LP+L N
Sbjct: 134 FAADGAK-------FTTAFARR-----------------GLIAEHGISWILPRLVGHANA 169
Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
LD+ L+ +T A++A ++G+V+++V P + ERT+ Y E++A N +
Sbjct: 170 LDLLLSARTFYAEEALRLGLVNRVVPP-----DELMERTLAYAEDLARNVS 215
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 83.7 bits (207), Expect = 1e-18
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 31/210 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
+VT+ P K+N+LN E+ +E S L++I +D IR VI++G+ F GAD+S
Sbjct: 8 EGYAIVTMSRPD-KLNALNLEMRNEFISKLKQINADPKIRV-VIVTGEGRAFCVGADLSE 65
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A D + ++ I+ EI S K ++AI+G G + +AL+ ++ A +D K
Sbjct: 66 FAPDFAID----LRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVK 121
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
A LGL G L KLT ++ + G
Sbjct: 122 -------FVTAFQ-----------------RLGLASDTGVAYFLLKLTGQ-RFYEILVLG 156
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEE 280
A++A++ G++ +PL
Sbjct: 157 GEFTAEEAERWGLLKISEDPLSDAEEMANR 186
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 82.7 bits (205), Expect = 4e-18
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
V +TL+ P N+L++ + + + L +D + V+++G F AG D+
Sbjct: 11 HDRVRTLTLNRPE-ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLK 68
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
L +A + + + KP++ AI+G+ + GGLE+ALAC IA
Sbjct: 69 ELGGDGSAYGAQD---ALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIA---- 121
Query: 190 KTGLGLPEVALAC--HYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
E A H R+ G+LPG G + RLP+ + M+
Sbjct: 122 ------SERARFADTHARV----------------GILPGWGLSVRLPQKVGIGRARRMS 159
Query: 248 LTGKTLKADKAKKMGIVDQLVEP 270
LTG L A A + G+V ++V
Sbjct: 160 LTGDFLDAADALRAGLVTEVVPH 182
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 83.3 bits (206), Expect = 2e-17
Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 36/223 (16%)
Query: 63 KHFKEKAVGDVLVVTLD-------SPG--VKVNSLNSEVMSEIQSILRRIQSD-SSIRSA 112
+H+K G V +T+D PG +K+NS + V E+ ++RI+ + +R+
Sbjct: 11 RHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTV 70
Query: 113 VIISGKPGCFIAGADISMLAACKTADQV---KQISKSGQQILSEIESSPKPIVAAISGSC 169
V+ SGK F +GA+I ML A +V K +++ I S +AA++G+C
Sbjct: 71 VMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTC 130
Query: 170 LGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG 229
GGG E+ALAC + V D+ + + LPEV L LG+LPG G
Sbjct: 131 AGGGYELALACDEIMLVDDRSSSVSLPEVPL---------------------LGVLPGTG 169
Query: 230 GTQRLP-KLTALPNVLDMTLT-GKTLKADKAKKMGIVDQLVEP 270
G R+ K + D+ T + ++ +AK+ +VD++V+P
Sbjct: 170 GLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP 212
>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.
Length = 550
Score = 80.0 bits (198), Expect = 2e-16
Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 68/239 (28%)
Query: 63 KHFKEKAVGDVLVVTLD-------SPG--VKVNSLNSEVMSEIQSILRRIQSD-SSIRSA 112
+H+K G V +T+D PG +K+NS + V E+ L+RI+ + +R+
Sbjct: 15 RHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTV 74
Query: 113 VIISGKPGCFIAGADISMLAA---------CK----TADQVKQISK-SGQQILSEIESSP 158
V+ S K F +GA+I ML CK T + ++ S+ SG + +
Sbjct: 75 VVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFI------- 127
Query: 159 KPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218
AA++G+C GGG E+ALAC + V D+ + + LPEV L
Sbjct: 128 ----AAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPL------------------ 165
Query: 219 EVMLGLLPGAGGTQRLPKLT-------ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
LG+LPG GG L ++T L ++ G ++ +A +VD++V+P
Sbjct: 166 ---LGVLPGTGG---LTRVTDKRKVRRDLADIFCTIEEG--VRGKRAVDWRLVDEVVKP 216
Score = 33.4 bits (77), Expect = 0.17
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 22/119 (18%)
Query: 151 LSEIESSPKPIVAAI-SGSCLGGGL-EVALACHYRIAVKDKKTGLGLPEVALACHYRIVV 208
L ++ + + + A I GSC G L E+ALA D+ L LP+
Sbjct: 362 LKRLDVTSRSLFALIEPGSCFAGTLAELALAA-------DRSYMLALPDDN--------- 405
Query: 209 KDKKTGLGLPEVMLGLLPGAGGTQRLP-KLTALPNVLD--MTLTGKTLKADKAKKMGIV 264
D + L + GL P G RL + P+ L G+ L AD A+++G+V
Sbjct: 406 -DPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLV 463
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 77.2 bits (191), Expect = 3e-16
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 54/222 (24%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V V L+ P V+ N+++ + + R +D + AV+ G G F AGAD+
Sbjct: 11 GPVTTVILNRPEVR-NAVDGPTAAALADAFRAFDADDAASVAVL-WGAGGTFCAGADLKA 68
Query: 131 LAACKTADQVKQISKSG-------QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
+ + ++ SG + LS KP++AA+SG + GGLE+AL C R
Sbjct: 69 VGT----GRGNRLHPSGDGPMGPSRMRLS------KPVIAAVSGYAVAGGLELALWCDLR 118
Query: 184 IAVKDKKTGL-----GLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT 238
+A +D G+ G+P + D GGT RLP+L
Sbjct: 119 VAEEDAVFGVFCRRWGVPLI-----------D------------------GGTVRLPRLI 149
Query: 239 ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE 280
+D+ LTG+ + AD+A +G+ +++V P G EE
Sbjct: 150 GHSRAMDLILTGRPVDADEALAIGLANRVV-PKGQARAAAEE 190
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 77.3 bits (191), Expect = 3e-16
Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLN-SEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
G ++ +T++ P + N+L+ ++ + + + I +D S+R AVI++G F +G ++
Sbjct: 11 GHIVTLTMNRPETR-NALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVK 68
Query: 130 MLAACK-----TADQVKQISKSG-QQI---LSEIESSPKPIVAAISGSCLGGGLEVALAC 180
+ A + ++Q + G Q+I L +E P++AA++G +G G ++A C
Sbjct: 69 DMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEV---PVIAAVNGPAIGAGCDLACMC 125
Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
RIA + + V LGL+PG GG LP++ +
Sbjct: 126 DIRIASETARFAESF------------------------VKLGLIPGDGGAWLLPRIIGM 161
Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
+M TG + A A + G+V ++V
Sbjct: 162 ARAAEMAFTGDAIDAATALEWGLVSRVVPA 191
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 77.0 bits (190), Expect = 3e-16
Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 48/245 (19%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI-SML 131
V VVTLD+P VN+L+ E+ E+ ++ I +R V+++G F AGAD+
Sbjct: 14 VAVVTLDNP--PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRP 70
Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
K ++ ++ ++ I KP++AA++G LG GL + +C
Sbjct: 71 DVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCD---------- 120
Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL--DMTLT 249
I+V + GLPE+ +GL G RL + L M LT
Sbjct: 121 --------------IIVASENAVFGLPEIDVGLAGGGKHAMRL-----FGHSLTRRMMLT 161
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKIN 305
G + A + + G+++ + P E M E+A AS+ K +N
Sbjct: 162 GYRVPAAELYRRGVIEACL---------PPEELMPEAMEIAREIASKSPLATRLAKDALN 212
Query: 306 RIKPM 310
I+ M
Sbjct: 213 TIENM 217
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 76.1 bits (188), Expect = 8e-16
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V VTL+ P V+ N+ N V++E+ + R + +D S+R AV+++G F AGAD++
Sbjct: 12 GQVATVTLNRPDVR-NAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNW 69
Query: 131 LAACKTADQVKQISKSGQ--QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
+ + + + + +L I PKP++A + G GG+ + AC +A
Sbjct: 70 MKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT-ALPN--VLD 245
L EV LGL+P P + A+
Sbjct: 130 AV------------------------FCLSEVRLGLIP----ATISPYVIRAMGERAARR 161
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEP 270
LT + A +A ++G+V ++V
Sbjct: 162 YFLTAERFDAAEALRLGLVHEVVPA 186
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 75.7 bits (186), Expect = 1e-15
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 35/192 (18%)
Query: 86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC----------K 135
N+L+ + +E L + + ++ S +I+SG F +G D+ L + +
Sbjct: 30 NALSLDFFTEFPKALSSLDQNPNV-SVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR 88
Query: 136 TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGL 195
+ +++++ K Q ++ IE KP++AAI G+C+GGG+++ AC R +D
Sbjct: 89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED------- 141
Query: 196 PEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 255
+ EV L + G QRLP + N +++ LTG+
Sbjct: 142 -----------------AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSG 184
Query: 256 DKAKKMGIVDQL 267
+AK++G+V ++
Sbjct: 185 SEAKELGLVSRV 196
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 74.6 bits (184), Expect = 3e-15
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 37/223 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G VL++ LD P K N+ +S ++ ++ L ++D +R AV+ + F AG D++
Sbjct: 7 GHVLLIGLDRPA-KRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEH-FTAGLDLAD 64
Query: 131 LAACKTADQVKQISKSGQ---QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
+A K A + G + S KP+V A+ G CL G+E+ LA +A
Sbjct: 65 VAP-KLAAGGFPFPEGGIDPWGTVGRRLS--KPLVVAVQGYCLTLGIELMLAADIVVAAD 121
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
+ T EV G+LP G T R P+ N +
Sbjct: 122 N------------------------TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL 157
Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA 290
LTG A +A ++G+V ++V P G L ER +E E +A
Sbjct: 158 LTGDEFDAQEALRLGLVQEVVPP-GEQL----ERAIELAERIA 195
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 74.3 bits (183), Expect = 4e-15
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 29/200 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQ-SDSSIRSAVIISGKPGCFIAGADIS 129
G V + L+ P +N+L+ ++ E+ L+ + S + I V++ G F AG DI
Sbjct: 14 GRVATIMLNRPEA-LNALDEPMLKELLQALKEVAESSAHI---VVLRGNGRGFSAGGDIK 69
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
M+ + + + + +I+ + + PK ++AI G G GL +AL Y IA
Sbjct: 70 MMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISA 129
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
K LA ++ + +GL+P GG L K +
Sbjct: 130 K---------LAMNF---------------IGIGLIPDGGGHFFLQKRVGENKAKQIIWE 165
Query: 250 GKTLKADKAKKMGIVDQLVE 269
GK L A +A +G++D+++
Sbjct: 166 GKKLSATEALDLGLIDEVIG 185
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 73.7 bits (181), Expect = 5e-15
Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 38/255 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +TL+ P K+NS +E+ E++ L R++ D R A++++G F AG D+S
Sbjct: 7 AGVARLTLNRPD-KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSE 63
Query: 131 LAACKTA--DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
D + I ++ + + P P+V A++G G G +ALAC +A +
Sbjct: 64 RNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES 123
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
A + K +GL+P +GGT LP+L + + +
Sbjct: 124 ------------ARFIQAFAK------------IGLIPDSGGTWSLPRLVGRARAMGLAM 159
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIK 308
G+ L A A G++ Q+V+ + M+ + +AV+ A+Q G R
Sbjct: 160 LGEKLDARTAASWGLIWQVVD---------DAALMDEAQALAVHLAAQPTRGLALTKRAI 210
Query: 309 PMIPDKVLDVALKFE 323
LD L E
Sbjct: 211 QAAATNSLDTQLDLE 225
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 72.6 bits (178), Expect = 7e-15
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 26/185 (14%)
Query: 86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK 145
N+L +V EI + + + +AVI+ G F AG D+ L +A + ++
Sbjct: 29 NALTRQVYREIVAAANELGRRDDV-AAVILYGGHEIFSAGDDMPELRTL-SAQEADTAAR 86
Query: 146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYR 205
QQ + + + PKP VAAI+G LG GL +ALA +R++ + K
Sbjct: 87 VRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVK--------------- 131
Query: 206 IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVD 265
G E++ GL P G RL + ++ +G+ A++A +G++D
Sbjct: 132 ---------FGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLID 182
Query: 266 QLVEP 270
++V P
Sbjct: 183 EMVAP 187
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 72.9 bits (179), Expect = 1e-14
Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 32/205 (15%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
K+ + +T++ P +N+L +M E+ + +R+ D S++ +I++G F +G
Sbjct: 14 PKSRNGIATITINRPK-ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGV 71
Query: 127 DISMLAACKTADQVKQISKS-GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
D++ AA + K K ++++E KPI+ AI+G + G E+ALAC +A
Sbjct: 72 DLT--AA---EEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVA 126
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
+ K + H + G+ P G +Q+L ++ +
Sbjct: 127 SRGAKF--------IDTHAK----------------FGIFPSWGLSQKLSRIIGANRARE 162
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEP 270
++LT L A+ A++ G+V+ +VE
Sbjct: 163 VSLTAMPLTAETAERWGLVNHVVEE 187
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 72.4 bits (178), Expect = 1e-14
Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 39/233 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G++ ++TL G + LN ++ I+S LR+++S ++ S +I + + F G D++
Sbjct: 8 GNLFILTLTGDGE--HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAW 65
Query: 131 L-AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
AA ++ + + +++++ S P P +AA++G G +AL+ Y + KD+
Sbjct: 66 AQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDR 125
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL-DMTL 248
L + EV + GL LP+ + LL G+ P D+ L
Sbjct: 126 GV-LYMSEVDI-------------GLPLPDYFMALLRAKIGS---------PAARRDVLL 162
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
L A++A +MGIVD H E E AV +LA+ K
Sbjct: 163 RAAKLTAEEAVEMGIVDSA---------HDSA---EETVEAAVRLGEELAARK 203
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 73.1 bits (180), Expect = 1e-14
Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 42/214 (19%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS--- 129
+ +TL+ P K+N+ + E+ +D ++R AVI++G F AGAD+S
Sbjct: 14 IATITLNRPD-KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGG 71
Query: 130 -------------MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEV 176
+ + G ++ I S KP++AA++G +G G +
Sbjct: 72 NTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATM 131
Query: 177 ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK 236
LA R+A + G V + G++P A + LP+
Sbjct: 132 TLAMDIRLASTAARFGF--------------VFGR----------RGIVPEAASSWFLPR 167
Query: 237 LTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
L L L+ +G+ A +A G+V + P
Sbjct: 168 LVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 70.8 bits (174), Expect = 8e-14
Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
+HF + V +TL+ P K N L E +E++ + R + ++ AV+++G G
Sbjct: 16 ARHFLWEVDDGVATITLNRPERK-NPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGN 73
Query: 122 FIAGAD----ISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVA 177
F +G D I L + + +G + + P+PI+AA+ G C G G +A
Sbjct: 74 FCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRAC-PQPIIAAVDGVCAGAGAILA 132
Query: 178 LACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA--GGTQRLP 235
+A R+ KT V LA GA G LP
Sbjct: 133 MASDLRLGTPSAKTAFLFTRVGLA-------------------------GADMGACALLP 167
Query: 236 KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS 295
++ ++ TG+++ A++ ++ G ++LVEP E L A A
Sbjct: 168 RIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-------------EELLAEAQALAR 214
Query: 296 QLASG 300
+LA+G
Sbjct: 215 RLAAG 219
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 68.6 bits (168), Expect = 3e-13
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
V ++T++ P + N++ +E+ +++++ + ++D + A++++G F AGAD++ L
Sbjct: 13 VALITVNDPD-RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALG 70
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
A + + L+ + S P P +AA++G+ +G GL +ALA RIA
Sbjct: 71 AAPGRPAEDGLRRIYDGFLA-VASCPLPTIAAVNGAAVGAGLNLALAADVRIAG------ 123
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
P+ + LGL PG G T L + L G
Sbjct: 124 ---PKALFDARF---------------QKLGLHPGGGATWMLQRAVGPQVARAALLFGMR 165
Query: 253 LKADKAKKMGIVDQLVE 269
A+ A + G+ + +
Sbjct: 166 FDAEAAVRHGLALMVAD 182
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 68.3 bits (167), Expect = 5e-13
Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 42/230 (18%)
Query: 72 DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
++ ++TL+ P ++NS+ +VM ++ L + D+S+R V+++G F +GAD
Sbjct: 19 EIALITLNRPE-RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSA 76
Query: 132 AACKTADQVKQ--ISKSGQQILSEI----ESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
+ + + + ++L ++ +P++AA++G +GGGL +ALA R+A
Sbjct: 77 GVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVA 136
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG-LLPGAGGTQRLPKLTALPNVL 244
++R GL E+ L LLP A G+ R
Sbjct: 137 SSS-------------AYFR--AAGINNGLTASELGLSYLLPRAIGSSR---------AF 172
Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
++ LTG+ + A++A+++G+V + V P+E+ ++ +A A
Sbjct: 173 EIMLTGRDVDAEEAERIGLVSRQV---------PDEQLLDTCYAIAARMA 213
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 67.6 bits (166), Expect = 6e-13
Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 30/202 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +TL+ P K+NS E+ E++ L +++ D R A++++G F AG D++
Sbjct: 12 AGVATLTLNRPD-KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLAD 68
Query: 131 LAACKTA---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
D + I ++ + + P P++AA++G G G +ALAC +A +
Sbjct: 69 RDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAAR 128
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
A + VK +GL+P +GGT LP+L + L +
Sbjct: 129 S------------ASFIQAFVK------------IGLVPDSGGTWFLPRLVGMARALGLA 164
Query: 248 LTGKTLKADKAKKMGIVDQLVE 269
L G+ L A++A++ G++ ++V+
Sbjct: 165 LLGEKLSAEQAEQWGLIWRVVD 186
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 67.3 bits (164), Expect = 7e-13
Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 46/231 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G +L + L P K N +++ +++ + + L DS++R AV++ + F GA +
Sbjct: 9 GKLLRLRLARP--KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASV-- 63
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A DQ + S +++ + SP PI+ A+ G CLGGGLEVA A + A D K
Sbjct: 64 --AEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAK 121
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT---QRLPKLTALPNVLDMT 247
LG PE++LG+ A +R+ ++ A D+
Sbjct: 122 ------------------------LGQPEIVLGVFAPAASCLLPERMGRVAA----EDLL 153
Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEE-VAVNTASQL 297
+G+++ + ++G+ + + E PE + + +E A +AS L
Sbjct: 154 YSGRSIDGAEGARIGLANAVAE-------DPENAALAWFDEHPAKLSASSL 197
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 65.7 bits (161), Expect = 4e-12
Identities = 55/207 (26%), Positives = 82/207 (39%), Gaps = 63/207 (30%)
Query: 89 NSEVMSEI---QSILRRIQSDSS--IRSAVIISGKPGCFIAGADISMLA----------- 132
N E++ +I Q +R+ DS + V+ S PG F G D+++ A
Sbjct: 41 NLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDAL 100
Query: 133 ---ACKTADQVKQISK-SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
A D V + G +S +A + G LGGG E AL+ H IA +
Sbjct: 101 LAYARACVDGVHAFHRGFGAGAIS---------IALVQGDALGGGFEAALSHHTIIAERG 151
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG----TQRL-PKLTALPNV 243
K +G PE++ L PG G +R+ PKL
Sbjct: 152 AK------------------------MGFPEILFNLFPGMGAYSFLARRVGPKLAE---- 183
Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEP 270
++ L+GK A++ MG+VD LVE
Sbjct: 184 -ELILSGKLYTAEELHDMGLVDVLVED 209
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 64.3 bits (157), Expect = 8e-12
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 40/216 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V +TLDSP + N+L++ +++++ LR +D ++R AV+++ G F AGAD+S
Sbjct: 14 GGVATLTLDSPHNR-NALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSE 71
Query: 131 LAACKTADQVKQISKSGQQI--LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
++++ + L I PKP++AAI G GG + AC
Sbjct: 72 AGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACD------- 124
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT--ALPNVLDM 246
IVV ++ L E +G+ P LP+L+ A
Sbjct: 125 -----------------IVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYY-- 165
Query: 247 TLTGKTLKADKAKKMGIV-------DQLVEPLGPGL 275
LTG+ A +A ++G+V D V L L
Sbjct: 166 -LTGEKFGAAEAARIGLVTAAADDVDAAVAALLADL 200
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 63.9 bits (156), Expect = 1e-11
Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 35/203 (17%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
V +TL+ P K N+L++ +++E+ + RR+ +D+++R V+++G F AG D+ +
Sbjct: 15 VATLTLNRPE-KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMR 72
Query: 133 ACKTADQVKQISKSGQ--QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A TAD+ +I ++ + +L + PKP++ I G GGG+ + C IAV +
Sbjct: 73 AQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR 132
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT---QRLPKLTALPNVLDMT 247
GL E LGL+P R+ + A +
Sbjct: 133 ------------------------FGLTETRLGLIPATISPYVVARMGEANARR----VF 164
Query: 248 LTGKTLKADKAKKMGIVDQLVEP 270
++ + A++A ++G++ ++V
Sbjct: 165 MSARLFDAEEAVRLGLLSRVVPA 187
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 64.1 bits (156), Expect = 1e-11
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 27/204 (13%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-KPGCFIAG 125
++ G + VV L VNS+ + + L +++D ++R V SG + F AG
Sbjct: 16 DRRPGGIAVVWLAKE--PVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAG 73
Query: 126 ADISMLAACKT-ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
DI+ L A KT A + + + L + S V AI G+C GG V+L C YR+
Sbjct: 74 NDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRL 133
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
+ T +GL EVAL G+ +P+ L G +++ +
Sbjct: 134 -QTTEGT-MGLNEVAL-------------GIPVPKFWARLFMGRVIDRKVAESL------ 172
Query: 245 DMTLTGKTLKADKAKKMGIVDQLV 268
L G+ ++ +AK++G++D++V
Sbjct: 173 --LLRGRLVRPAEAKQLGLIDEVV 194
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 63.5 bits (155), Expect = 1e-11
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G VL + L P + N+LN+E+ E++ +R+ D S R A++++G+ F AGAD
Sbjct: 8 GQVLTIELQRPE-RRNALNAELCEELREAVRKA-VDESAR-AIVLTGQGTVFCAGAD--- 61
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
L+ AD + ++L I+++P P++AAI+G +G GL++A+AC R+ +
Sbjct: 62 LSGDVYADD---FPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE 116
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 63.2 bits (154), Expect = 2e-11
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 29/203 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
D+ +TL+ P V N N + EI LR + D S+R ++I+ F G D+
Sbjct: 10 DDLATLTLNRPEVS-NGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVE 67
Query: 131 LAACKTADQVK---QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
+ D V+ +I++ +I I+ PKP++ + G+ G +A+A + IA
Sbjct: 68 MKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIA-- 125
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
KT V +GL P AGG L + L +
Sbjct: 126 ----------------------STKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLA 163
Query: 248 LTGKTLKADKAKKMGIVDQLVEP 270
+TG+ L A+KA + G V ++ E
Sbjct: 164 MTGEALTAEKALEYGFVYRVAES 186
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 63.1 bits (154), Expect = 2e-11
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
VL + L+ PG +N+ ++ + E+ I R + D +R V+I G+ F AG D++++
Sbjct: 22 VLEIVLNGPG-ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVE 79
Query: 133 A-CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK- 190
+ ++ + + ++ + + KPIV+AI G +G GL AL IA KD +
Sbjct: 80 EMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARI 139
Query: 191 ----TGLGLPEVALACHYRIV 207
T LG VA H IV
Sbjct: 140 IDGHTRLG---VAAGDHAAIV 157
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 61.3 bits (149), Expect = 9e-11
Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 50/288 (17%)
Query: 63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
K G V ++TLD P V +N+++ +++ + L I+ + ++++G F
Sbjct: 4 KKVTLDFDGGVAILTLDHPEV-MNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGF 62
Query: 123 IAGADIS-MLAACKTADQVKQISKSGQQI----LSEIESSPKPIVAAISGSCLGGGLEVA 177
GA++ + + +D + + L + + P PIV A++G G G+ A
Sbjct: 63 CTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFA 122
Query: 178 LACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL 237
L + + L RI GL+P G T LP+L
Sbjct: 123 LMGDLILCARSA--------YFLQAFRRI----------------GLVPDGGSTWLLPRL 158
Query: 238 TALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL 297
++++L G+ L A+ A + G+V+++V + M A+ A +L
Sbjct: 159 VGKARAMELSLLGEKLPAETALQWGLVNRVV---------DDAELM----AEAMKLAHEL 205
Query: 298 ASGKLK----INRIKPMIPDKVLDVALKFEFVRNQIFGK---AKEKVM 338
A+G I ++ P+ + L E +I GK KE V
Sbjct: 206 ANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVG 253
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 60.0 bits (146), Expect = 2e-10
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 43/228 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +TLD KVN+L+ ++ + + L + + D R+ V+I+G+PG F G D+ +
Sbjct: 11 DGVATITLDDG--KVNALSPAMIDALNAALDQAEDD---RAVVVITGQPGIFSGGFDLKV 65
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ A + +G + + S PKP++ A +G + G + L+ YRI V
Sbjct: 66 MT--SGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGV-HGP 122
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+GL EVA+ G+ +P + L RL +A +
Sbjct: 123 FKIGLNEVAI-------------GMTMPHAAIELA-----RDRLTP-SAFQRA---VINA 160
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298
+ ++A G +D++V P E L A A +LA
Sbjct: 161 EMFDPEEAVAAGFLDEVVPP-------------EQLLARAQAAARELA 195
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 56.9 bits (138), Expect = 3e-09
Identities = 45/232 (19%), Positives = 98/232 (42%), Gaps = 46/232 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +TL+ P N+L+ +++ +Q+ L I +D S+R V+++ F AG D+
Sbjct: 19 DGVATLTLNRPQ-AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKE 76
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ A + + + +++ I + P+P++A + G G ++ +C +A +
Sbjct: 77 MRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTAR 136
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL---PGAGGTQRLPKLTALPNVLDMT 247
+P V +GL P ++ +P+ A ++M
Sbjct: 137 ------------------------FAVPGVNIGLFCSTPMVALSRNVPRKQA----MEML 168
Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
LTG+ + A A++ G+V+++V + L+ A+ +A+
Sbjct: 169 LTGEFIDAATAREWGLVNRVVPA-------------DALDAAVARLAAVIAA 207
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 55.8 bits (135), Expect = 5e-09
Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 42/202 (20%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
GDV + L P + N++N +++E +L R + ++I V++ G P F GAD S
Sbjct: 12 GDVCFLQLHRPEAQ-NTINDRLIAECMDVLDRCEHAATI---VVLEGLPEVFCFGADFSA 67
Query: 131 LAACKTADQVKQISKSGQQIL----SEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
+A + + L + + P +A + G GG+ A
Sbjct: 68 IAE---KPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD----- 119
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT---ALPNV 243
IV+ D+ L E++ GL+P LP L
Sbjct: 120 -------------------IVIADETAPFSLSELLFGLIPAC----VLPFLIRRIGTQKA 156
Query: 244 LDMTLTGKTLKADKAKKMGIVD 265
MTL + + A +A G+VD
Sbjct: 157 HYMTLMTQPVTAQQAFSWGLVD 178
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 56.2 bits (136), Expect = 6e-09
Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 70/276 (25%)
Query: 60 NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP 119
++ K + G + +TL+ P K N++ ++ E+++ + R D + +++SG
Sbjct: 7 DNLKTMTYEVTGRIARITLNRPE-KGNAITADTPLELRAAVERADLDPGVH-VILVSGAG 64
Query: 120 GCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSP--------------------- 158
F AG D+S A ++ +Q ++ + P
Sbjct: 65 KGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLW 124
Query: 159 ---KPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGL------GLPEVALACHYRIVVK 209
KP VA + G C+ GG ++AL C IA D K G G+P + + R+
Sbjct: 125 HAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAY-RL--- 180
Query: 210 DKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269
G QR + + TG + +A + G+ + V
Sbjct: 181 --------------------GPQRAKR---------LLFTGDCITGAQAAEWGLAVEAVP 211
Query: 270 PLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305
P +ERT +E +A +QLA KL +N
Sbjct: 212 P-----EELDERTERLVERIAAVPVNQLAMVKLAVN 242
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 55.0 bits (133), Expect = 1e-08
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 37/206 (17%)
Query: 70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQ--SDSSIRSAVIISGKPGC--FIAG 125
+ + +T ++P K N+L S+V+ I +++ + + IR VI+ G + AG
Sbjct: 11 INKIATITFNNPA-KRNAL-SKVL--IDDLMQALSDLNRPEIR-VVILRAPSGSKVWSAG 65
Query: 126 ADISML-AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
DI L + + D + +QIL I+ PKP++A + GS GG E+ ++C
Sbjct: 66 HDIHELPSGGR--DPL-SYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCD--- 119
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
+++ + + LG+ G V
Sbjct: 120 ---------------------LIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVK 158
Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEP 270
+M T + A +A +GI++ +VE
Sbjct: 159 EMFFTASPITAQRALAVGILNHVVEV 184
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 54.2 bits (131), Expect = 2e-08
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 47/229 (20%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
+ VT+D P VN+L S + + +D R V++ + F AG DI L
Sbjct: 12 IAEVTVDYP--PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQ 68
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
A + ++ + P++AA+ G CLGGG
Sbjct: 69 ATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGG------------------- 109
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL--TG 250
+ L + ++V GLPEV G L A QRL +P L L T
Sbjct: 110 -----IGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRL-----VPQHLMRALFFTA 159
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
T+ A + G V+++V P ++ L+E A+ A ++A+
Sbjct: 160 ATITAAELHHFGSVEEVV---------PRDQ----LDEAALEVARKIAA 195
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 51.3 bits (123), Expect = 2e-07
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 50/244 (20%)
Query: 69 AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI 128
A V V+ + P K N++ + + + L+ +D +IR+ V + G GCF AG D+
Sbjct: 12 AHPGVQVIRFNRPEKK-NAITRAMYATMAKALKAADADDAIRAHVFL-GTEGCFSAGNDM 69
Query: 129 SMLAACKTADQVKQISKSGQQI---LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
A + G +I L + + KPIV+ + G +G G + L C A
Sbjct: 70 QDFLAAAMGG-----TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFA 124
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
R + + P V L L+P AG + P+L
Sbjct: 125 SP-----------------RSLFRT-------PFVDLALVPEAGSSLLAPRLMGHQRAFA 160
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG---KL 302
+ G+ A+ A++ G++ ++V+ E +E + A +LA+ L
Sbjct: 161 LLALGEGFSAEAAQEAGLIWKIVDE-------------EAVEAETLKAAEELAAKPPQAL 207
Query: 303 KINR 306
+I R
Sbjct: 208 QIAR 211
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 51.0 bits (123), Expect = 4e-07
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 37/202 (18%)
Query: 75 VVTLDSPGVK-VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISML- 131
V+TL+ P K +N+L+ E++ I + L + D ++ AV+I G F AG DI L
Sbjct: 15 VITLNRP--KALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALY 71
Query: 132 --AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
A + + ++ + I PKP +A + G +GGG V ++ H
Sbjct: 72 EAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGG--VGISAHGS------ 123
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MT 247
+RIV ++T + +PE +G P GGT L + P L +
Sbjct: 124 --------------HRIVT--ERTKMAMPETGIGFFPDVGGTYFLSR---APGALGTYLA 164
Query: 248 LTGKTLKADKAKKMGIVDQLVE 269
LTG + A A G+ D V
Sbjct: 165 LTGARISAADALYAGLADHFVP 186
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 47.7 bits (114), Expect = 4e-06
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 25/114 (21%)
Query: 158 PKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL 217
KP +A ++G C GGG +AC IA + + GL
Sbjct: 104 QKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQ------------------------FGL 139
Query: 218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPL 271
E+ G+ PG G ++ + + L +TG+T KA +MG+V++ V PL
Sbjct: 140 SEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESV-PL 192
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 46.7 bits (111), Expect = 9e-06
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 69 AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI 128
G V V+TL+ P +N ++ V+S + L + + D S+ +II G F AG D+
Sbjct: 17 EKGRVRVITLNRPRQ-LNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDL 74
Query: 129 SMLAACKTADQ-VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
M + +D ++ + I + K VA + G +GGG + + +R+
Sbjct: 75 KMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVT- 133
Query: 188 DKKTGLGLPEVALACH 203
+KT PE ++ H
Sbjct: 134 -EKTVFATPEASVGFH 148
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 46.1 bits (109), Expect = 2e-05
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 36/242 (14%)
Query: 76 VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA-- 133
+ LD+P + NS ++++ I RR SD + + V + F G + A
Sbjct: 41 IILDNPK-QYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYY 99
Query: 134 CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGL 193
+ +Q + ++S I KP++ ++G +GGG E+ +A + IA G
Sbjct: 100 AGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQ 159
Query: 194 GLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTL 253
P+ H G P G T LP + + +
Sbjct: 160 AGPK-----H-------------------GSAPIGGATDFLPLMIGCEQAMVSGTLCEPW 195
Query: 254 KADKAKKMGIVDQLVEPL---GPGLNHPEERTMEYLEEVA------VNTASQLASGKLKI 304
A KAK++GI+ +V L G + +P T YL+E +L +GK I
Sbjct: 196 SAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELI 255
Query: 305 NR 306
+
Sbjct: 256 KQ 257
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 42.6 bits (101), Expect = 1e-04
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 30/191 (15%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
+ VT+ K N+ + E+ ++ I D + VI++G P F G L
Sbjct: 15 IAQVTMQDRVNK-NAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLL 72
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
+ +T + + S + P P++AA+ G +GGGL + L + +
Sbjct: 73 SLQTGKGTFTEAN----LYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSR----- 123
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
E ++ + G PG G T LP+ L +M LT +
Sbjct: 124 ----ESVYTANF---------------MKYGFTPGMGATAILPEKLGLALGQEMLLTARY 164
Query: 253 LKADKAKKMGI 263
+ + KK G+
Sbjct: 165 YRGAELKKRGV 175
>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase.
Length = 381
Score = 43.2 bits (101), Expect = 1e-04
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 37/172 (21%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
V ++TL+ P ++N+L+ ++S + + + D S++ VI+ G F AG D++ A
Sbjct: 19 VRILTLNRPK-QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVA--A 74
Query: 133 ACKTADQVKQISKSGQQILSE-------IESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
+ +Q + G S+ + + K V+ ++G +GGG V++ +RIA
Sbjct: 75 VVRDIEQGNW--RLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIA 132
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL 237
++ T +PE LGL P G + L +L
Sbjct: 133 TEN------------------------TVFAMPETALGLFPDVGASYFLSRL 160
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 42.5 bits (100), Expect = 2e-04
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI 143
K N+ N++++ E+ L ++QSD+S+R +++ G+ F AGAD++ + ++AD
Sbjct: 26 KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQ--QSADLDYNT 82
Query: 144 SKSGQQILSEIESS----PKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVA 199
+ + L+E+ + P +A + G+ GG L + C I D + L +
Sbjct: 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIG 142
Query: 200 LA 201
LA
Sbjct: 143 LA 144
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 41.6 bits (97), Expect = 4e-04
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---ADQVK 141
+N+L + + +Q + + + D +I V++ G F AG DI L + D ++
Sbjct: 58 LNALTTHMGYRLQKLYKNWEEDPNI-GFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIR 116
Query: 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALA 201
+ S + + + KP VA ++G +GGG V++ +R+A +T PE +
Sbjct: 117 EFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVAT--DRTIFATPETIIG 174
Query: 202 CH 203
H
Sbjct: 175 FH 176
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 40.7 bits (95), Expect = 6e-04
Identities = 58/259 (22%), Positives = 100/259 (38%), Gaps = 66/259 (25%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG----- 125
G V +TL+ P ++N++ + EI++ + + D I+ +++ G F G
Sbjct: 13 GPVATITLNRPE-QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGG 70
Query: 126 ------------------ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167
D +M+ A +T K ++ I + KP++A + G
Sbjct: 71 GFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMA---------IWRASKPVIAQVHG 121
Query: 168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG 227
C+GG + AL IA D +G P + Y TG+ L
Sbjct: 122 WCVGGASDYALCADIVIASDDAV--IGTPYSRMWGAYL-------TGMWL---------- 162
Query: 228 AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLE 287
RL +L V +LTG+ L +A + ++++ V E R E
Sbjct: 163 ----YRL----SLAKVKWHSLTGRPLTGVQAAEAELINEAVP-----FERLEARVAEVAT 209
Query: 288 EVAVNTASQLASGKLKINR 306
E+A SQL + KL +N+
Sbjct: 210 ELARIPLSQLQAQKLIVNQ 228
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 40.5 bits (95), Expect = 0.001
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 41/253 (16%)
Query: 61 STKHFK----EKAVGDVLV-VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVII 115
S K F EKAVG+ + +T++ P + N+ + E+Q + DSS+ +I+
Sbjct: 60 SGKEFTDIIYEKAVGEGIAKITINRPERR-NAFRPRTVKELQRAFNDARDDSSV-GVIIL 117
Query: 116 SGK-PGCFIAGADISMLAACKTADQ--VKQISKSGQQILSEIESSPKPIVAAISGSCLGG 172
+GK F +G D ++ +++ QI +I PKP++A ++G +GG
Sbjct: 118 TGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQI--QIRRLPKPVIAMVAGYAVGG 175
Query: 173 GLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232
G + + C IA + G +TG P+V G G+
Sbjct: 176 GHILHMVCDLTIAADNAVFG-------------------QTG---PKV--GSFDAGYGSS 211
Query: 233 RLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
+ +L +M + A +A KMG+V+ +V L+ E T+++ E+ N
Sbjct: 212 IMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVP-----LDELEGETVKWCREILRN 266
Query: 293 TASQLASGKLKIN 305
+ + + K +N
Sbjct: 267 SPTAIRVLKSALN 279
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 39.2 bits (92), Expect = 0.002
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G + +TL+ P + N+ N +++ E+ + RR ++D ++R ++++G F AG D+
Sbjct: 12 GRIARITLNRPEAR-NAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGS 69
Query: 131 LAACKTADQVKQ---------ISKSGQQILSEIESS------------PKPIVAAISGSC 169
+ D +K G + E PKP +A + G+C
Sbjct: 70 GTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGAC 129
Query: 170 LGGGLEVALACHYRIAVKD 188
+ GGL +A C +A D
Sbjct: 130 IAGGLMLAWVCDLIVASDD 148
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 37.4 bits (87), Expect = 0.007
Identities = 50/262 (19%), Positives = 100/262 (38%), Gaps = 40/262 (15%)
Query: 47 LMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSD 106
+ + EK+V + +T++ P V+ N+ + + E+ + D
Sbjct: 4 DYAPWEWVD-GFEGYEDITYEKSVDGIAKITINRPEVR-NAFRPKTVDEMIDAFADARDD 61
Query: 107 SSIRSAVIISGKPG--CFIAGADISM---LAACKTADQVKQISKSGQQILSEIESSPKPI 161
++ ++ G F +G D + D + +++ Q L I + PKP+
Sbjct: 62 PNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRL--IRTMPKPV 119
Query: 162 VAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221
+A ++G +GGG + + C IA + G +TG P+V
Sbjct: 120 IAMVAGYAIGGGHVLHVVCDLTIAADNAIFG-------------------QTG---PKV- 156
Query: 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEER 281
G G G+ L ++ ++ + A++A MG+V+ +V E+
Sbjct: 157 -GSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVP-----HADLEKE 210
Query: 282 TMEYLEEVAVNTASQLASGKLK 303
T+++ E + S A LK
Sbjct: 211 TVQWARE--MLAKSPTALRMLK 230
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 37.1 bits (86), Expect = 0.007
Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 76 VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADISMLAAC 134
+T++ P V+ N+ + EI L + D I VI++G F +G D +
Sbjct: 16 ITINRPQVR-NAFRPLTVKEIIQALDDAREDPDI-GVVILTGAGDKAFCSGGDQKVRGDY 73
Query: 135 KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLG 194
D + + +I + PKP++A ++G +GGG + + C IA ++ + G
Sbjct: 74 GYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQT 133
Query: 195 LPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLK 254
P+V G G G+ + ++ ++ +
Sbjct: 134 GPKV------------------------GSFDGGYGSSYMARIVGQKKAREIWFLCRQYD 169
Query: 255 ADKAKKMGIVDQLVE 269
A +A MG+V+ +V
Sbjct: 170 AKQALDMGLVNTVVP 184
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 36.1 bits (83), Expect = 0.027
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 35/175 (20%)
Query: 85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144
+N+L +++ ++ + + + I V++ G F +GAD+ L V++
Sbjct: 63 LNALTIPMVARLKRLYESWEENPDI-GFVLMKGSGRAFCSGADVVSLYHLINEGNVEE-C 120
Query: 145 KSGQQILSEIE----SSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVAL 200
K + L + + KP VA + G +G G +++ +R+
Sbjct: 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTD------------- 167
Query: 201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MTLTGKTL 253
KT PEV +G P AG + L + LP L + LTG+ L
Sbjct: 168 -----------KTVFAHPEVQMGFHPDAGASYYLSR---LPGYLGEYLALTGQKL 208
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 34.1 bits (78), Expect = 0.079
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI 143
K+N+ + E+ L+ D I V+ F G D S D I
Sbjct: 22 KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQS--THDGGYDGRGTI 79
Query: 144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEV 198
+++ S I PKP++A + G +GGG + C IA + + G P+V
Sbjct: 80 GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKV 134
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 32.6 bits (75), Expect = 0.24
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 76 VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISML--A 132
+T++ P V+ N+ + + E+ + D +I +I++G F +G D +
Sbjct: 26 ITINRPEVR-NAFRPKTVKEMIDAFADARDDDNI-GVIILTGAGDKAFCSGGDQKVRGYG 83
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
D V +++ Q L I + PKP++A ++G +GGG + L C IA
Sbjct: 84 GYVDDDGVPRLNVLDLQRL--IRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIA 134
>gnl|CDD|220725 pfam10383, Clr2, Transcription-silencing protein Clr2. Clr2 is a
chromatin silencing protein, one of a quartet of
proteins forming the core of SHREC, a multienzyme
effector complex that mediates hetero-chromatic
transcriptional gene silencing in fission yeast. Clr2
does not have any obvious well-conserved domains but,
along with the other core proteins, binds to the histone
deacetylase Clr3, and on its own might also have a role
in chromatin organisation at the cnt domain, the site of
kinetochore assembly.
Length = 133
Score = 31.2 bits (71), Expect = 0.37
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 70 VGDVLVVTLDSPGVKVNSLNSEVM-----SEIQSILRRIQSDSSIRSAVIISGK 118
VGD + + + + L +V EIQ L IQ D ++S V GK
Sbjct: 15 VGDPVRLKPTGYSLGASRLGPDVTDVMVIDEIQ--LDLIQCDPDLKSQVRFKGK 66
>gnl|CDD|204929 pfam12460, MMS19_N, NER and RNAPII transcription protein n
terminal. This domain family is found in eukaryotes,
and is approximately 60 amino acids in length. MMS19 is
required for both nucleotide excision repair (NER) and
RNA polymerase II (RNAP II) transcription.
Length = 64
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 257 KAKKMGIVDQLVEPLGPGLNHPEE----RTMEYLEEV 289
+ K+ ++ LVE LG L + + ++ L EV
Sbjct: 25 ENGKLTLL-DLVESLGEYLTSEDPIIRAKAVQLLSEV 60
>gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The
related but duplicated, double-length protein SppA
(protease IV) of E. coli was shown experimentally to
degrade signal peptides as are released by protein
processing and secretion. This protein shows stronger
homology to the C-terminal region of SppA than to the
N-terminal domain or to the related putative protease
SuhB. The member of this family from Bacillus subtilis
was shown to have properties consistent with a role in
degrading signal peptides after cleavage from precursor
proteins, although it was not demonstrated conclusively
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 208
Score = 29.6 bits (67), Expect = 2.1
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 23/95 (24%)
Query: 100 LRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIE--SS 157
L RI+ D +I++ V+ PG + + ++I ++E +
Sbjct: 23 LERIKDDKTIKALVLRINSPGGTVVAS---------------------EEIYKKLEKLKA 61
Query: 158 PKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
KP+VA++ G GG +++A A TG
Sbjct: 62 KKPVVASMGGMAASGGYYISMAADEIFANPGTITG 96
>gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 29.3 bits (66), Expect = 3.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 82 GVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF-IAGADISMLAACKTA 137
G V + N + +Q + +++ + +RS VI++G PG F AG D ++A + A
Sbjct: 17 GYAVPAFNIHNLETLQVV---VETAAELRSPVILAGTPGTFSYAGTD-YIVAIAEVA 69
>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 430
Score = 28.2 bits (63), Expect = 7.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
+ IL+ + SIR+ + IS P F+ GA
Sbjct: 275 ATCDPNGILKETKVVDSIRNYLNISTDPATFVQGA 309
>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an
ATP-dependent protease. Clp protease (caseinolytic
protease; ClpP; endopeptidase Clp; Peptidase S14;
ATP-dependent protease, ClpAP)-like enzymes are highly
conserved serine proteases and belong to the
ClpP/Crotonase superfamily. Included in this family are
Clp proteases that are involved in a number of cellular
processes such as degradation of misfolded proteins,
regulation of short-lived proteins and housekeeping
removal of dysfunctional proteins. They are also
implicated in the control of cell growth, targeting
DNA-binding protein from starved cells. The functional
Clp protease is comprised of two components: a
proteolytic component and one of several regulatory
ATPase components, both of which are required for
effective levels of protease activity in the presence of
ATP. Active site consists of the triad Ser, His and Asp,
preferring hydrophobic or non-polar residues at P1 or
P1' positions. The protease exists as a tetradecamer
made up of two heptameric rings stacked back-to-back
such that the catalytic triad of each subunit is located
at the interface between three monomers, thus making
oligomerization essential for function. Another family
included in this class of enzymes is the signal peptide
peptidase A (SppA; S49) which is involved in the
cleavage of signal peptides after their removal from the
precursor proteins by signal peptidases. Mutagenesis
studies suggest that the catalytic center of SppA
comprises a Ser-Lys dyad and not the usual Ser-His-Asp
catalytic triad found in the majority of serine
proteases. In addition to the carboxyl-terminal protease
domain that is conserved in all the S49 family members,
the E. coli SppA contains an amino-terminal domain.
Others, including sohB peptidase, protein C, protein
1510-N and archaeal signal peptide peptidase, do not
contain the amino-terminal domain. The third family
included in this hierarchy is nodulation formation
efficiency D (NfeD) which is a membrane-bound Clp-class
protease and only found in bacteria and archaea.
Majority of the NfeD genomes have been shown to possess
operons containing a homologous NfeD/stomatin gene pair,
causing NfeD to be previously named stomatin operon
partner protein (STOPP). NfeD homologs can be divided
into two groups: long and short forms. Long-form
homologs have a putative ClpP-class serine protease
domain while the short form homologs do not. Downstream
from the ClpP-class domain is the so-called NfeD or
DUF107 domain. N-terminal region of the NfeD homolog
PH1510 from Pyrococcus horikoshii has been shown to
possess serine protease activity having a Ser-Lys
catalytic dyad.
Length = 161
Score = 27.4 bits (61), Expect = 7.6
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
+G I+ +++S KP++A + G G +A A + +
Sbjct: 45 AGMNIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVM 84
>gnl|CDD|219361 pfam07277, SapC, SapC. This family contains a number of bacterial
SapC proteins approximately 250 residues long. In
Campylobacter fetus, SapC forms part of a
paracrystalline surface layer (S-layer) that confers
serum resistance.
Length = 220
Score = 27.5 bits (62), Expect = 9.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 198 VALACHYRIV-VKDKKTGLGLPEVMLGLLPG 227
A Y IV VK+ +TG P +LGL PG
Sbjct: 34 AQAAAEYPIVFVKNAETGQFQPVALLGLEPG 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.376
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,239,477
Number of extensions: 1770666
Number of successful extensions: 1743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1577
Number of HSP's successfully gapped: 111
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)