RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9060
(366 letters)
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 284 bits (728), Expect = 6e-90
Identities = 79/291 (27%), Positives = 129/291 (44%), Gaps = 45/291 (15%)
Query: 63 KHFK-EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
K ++ + D G VN N ++E++ + I++D+S++ ++ SGK
Sbjct: 6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DV 64
Query: 122 FIAGADISMLAACKTAD--QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALA 179
FI GADI+ ++ + +I S+ E P VAAI+G LGGGLE+ LA
Sbjct: 65 FIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLA 124
Query: 180 CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA 239
+R+ K +GLPEV LG+ PG GGT RLP+L
Sbjct: 125 ADFRVMADSAK------------------------IGLPEVKLGIYPGFGGTVRLPRLIG 160
Query: 240 LPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
+ N ++ +GK +A+ A K+ VD +V + L A++ + S
Sbjct: 161 VDNAVEWIASGKENRAEDALKVSAVDAVVTA-------------DKLGAAALDLIKRAIS 207
Query: 300 GKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
G+L + +K+ A++ + F AK V +G YPAP++
Sbjct: 208 GELDYKAKRQPKLEKLKLNAIE----QMMAFETAKGFVAGQAGPNYPAPVE 254
Score = 85.4 bits (212), Expect = 3e-18
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 60
+G YPAP++ + ++ G E EA GF++LA T S L+GLF E KK
Sbjct: 244 QAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKK 303
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 264 bits (677), Expect = 2e-82
Identities = 84/286 (29%), Positives = 125/286 (43%), Gaps = 49/286 (17%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
E V V+TL +P VNSL+ +V+ ++S S + ++ A++I+G G F G
Sbjct: 12 EVGGDGVAVITLINP--PVNSLSFDVLYNLKSNYEEALSRNDVK-AIVITGAKGRFSGGF 68
Query: 127 DISMLAACKTAD--QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
DIS + + + K S I +E++ KP VAAI G LGGGLE+A+ACH RI
Sbjct: 69 DISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARI 128
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
+ LGLPE+ LG++PG GGTQRLP+L L L
Sbjct: 129 SAP------------------------AAQLGLPELQLGVIPGFGGTQRLPRLVGLTKAL 164
Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
+M LT K +KA++ +G++D +V P L A A + +
Sbjct: 165 EMILTSKPVKAEEGHSLGLIDAVVPP-------------AELVTTARRWALDIVGRRKPW 211
Query: 305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
K+ + E AK + +K + PL
Sbjct: 212 VSSVSKTD-KLPPLGEAREI-----LTFAKAQTLKRAPN-MKHPLM 250
Score = 79.2 bits (196), Expect = 2e-16
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 3 GGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNST 62
PL LD + GI GP AG E EAE SQ+ +KGL+ +F +Q K
Sbjct: 242 APNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPG 301
Query: 63 KHFKEKAVGDV 73
+ +
Sbjct: 302 VTDRGLVPRKI 312
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 264 bits (678), Expect = 2e-82
Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 57/298 (19%)
Query: 53 AQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSA 112
+ + S + + ++ L +P VN+++ V+ E+++ L++ SD +++ A
Sbjct: 11 SSGLVPRGSHMAEYLRLPHSLAMIRLCNP--PVNAVSPTVIREVRNGLQKAGSDHTVK-A 67
Query: 113 VIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGG 172
++I G G F AGADI +A + ++ EI+ KP++AAI G LGG
Sbjct: 68 IVICGANGNFCAGADIHGFSAFTPGLAL-------GSLVDEIQRYQKPVLAAIQGVALGG 120
Query: 173 GLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232
GLE+AL CHYRIA + K +GLPEV LG+LPGA GTQ
Sbjct: 121 GLELALGCHYRIA------------------------NAKARVGLPEVTLGILPGARGTQ 156
Query: 233 RLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
LP++ +P LD+ +GK L AD+A ++GI+D +V+ E A+
Sbjct: 157 LLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKS--------------DPVEEAIK 202
Query: 293 TASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
A ++ ++ P ++ + + + +F +A KV K G AP
Sbjct: 203 FAQKIIDKPIE--------PRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPG-VLAPET 251
Score = 78.9 bits (195), Expect = 4e-16
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 6 YPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61
AP + ++ ++ G + E + F L + Q+K L F A+ K S
Sbjct: 246 VLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWS 301
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 190 bits (485), Expect = 7e-59
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 42/257 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V V+ +P VNSL+ E ++E+ L ++++D S R ++ S +PG F AG D++
Sbjct: 13 AGVAVMKFKNP--PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTE 70
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ ++ K+ Q++ + S +V+AI+G+C GG VAL C YRI
Sbjct: 71 MCG-RSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILA---- 125
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+ + +GL E LG++ L G
Sbjct: 126 ------DNP------------RYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLG 167
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
+A ++GIVDQ+V E ++ A++ +Q + K
Sbjct: 168 LLFPPAEALQVGIVDQVVPE-------------EQVQSTALSAIAQWMAIPDHARQLTKA 214
Query: 310 MI---PDKVLDVALKFE 323
M+ L +
Sbjct: 215 MMRKATASRLVTQRDAD 231
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 186 bits (476), Expect = 2e-57
Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 44/257 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
+ V TL+ N+++S+VM ++ ++ +++ D +IR V+I G+ F AGADI
Sbjct: 14 DHIAVATLNHA--PANAMSSQVMHDVTELIDQVEKDDNIR-VVVIHGEGRFFSAGADIKE 70
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ A Q ++++ GQ +E KP++AAI G+ LGGGLE A++CH R A + K
Sbjct: 71 FTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAK 130
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
LGLPE+ LGL+PG GTQRLP+ +M LT
Sbjct: 131 ------------------------LGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTS 166
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
+ +A K G+V+ + E + + A Q+A +
Sbjct: 167 TPITGAEALKWGLVNGVFAE-------------ETFLDDTLKVAKQIAGKSPATARAVLE 213
Query: 310 MI---PDKVLDVALKFE 323
++ ++ E
Sbjct: 214 LLQTTKSSHYYEGVQRE 230
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 194 bits (493), Expect = 4e-57
Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 47/304 (15%)
Query: 63 KHFKEKAVGDVLVVTLDSPGV---------KVNSLNSEVMSEIQSILRRIQSD-SSIRSA 112
KH+K G V + +D K+NS + V E+ ++RI+ + +R+
Sbjct: 21 KHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTV 80
Query: 113 VIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIE----SSPKPIVAAISGS 168
V+ S K F +GA+I ML T K + + +E S +AA++G+
Sbjct: 81 VLTSLKDRVFCSGANIFMLGLS-THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGA 139
Query: 169 CLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA 228
C GGG E+ALAC V D+ + + LPEV L LG+LPG
Sbjct: 140 CAGGGYELALACDEIYLVDDRSSSVSLPEVPL---------------------LGVLPGT 178
Query: 229 GGTQRLPKLTALP--NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL 286
GG R+ + + ++ ++AK +VD++V+P N ++
Sbjct: 179 GGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKP-----NQFDQAIQARA 233
Query: 287 EEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP 346
E+A + + + + RI+ + L ++ + I +
Sbjct: 234 LELAAQSDRPAHAQGVPLTRIERTD----REDGLTYKTLDVTIDRAKRIATFTAKAPQTE 289
Query: 347 APLK 350
P
Sbjct: 290 PPAS 293
Score = 76.2 bits (187), Expect = 2e-15
Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 28/269 (10%)
Query: 11 KILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAV 70
I + A+ +++ T + GL T + F KA
Sbjct: 228 AIQARALELAAQSDRPA-HAQGVPLTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKAP 286
Query: 71 GDVLVVTLD---SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGAD 127
++D + G L + + R + G + AD
Sbjct: 287 QTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDAR-HLLAAD 345
Query: 128 ISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI-SGSCLGGGL-EVALACHYRIA 185
+ L K V++ ++ L+ I+ S + + A I GSC G E+A A
Sbjct: 346 -ASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYM 404
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLP-KLTALPNVL 244
D++ + L EV GL P RL + L
Sbjct: 405 AALPANE-----------------DEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPL 447
Query: 245 DM--TLTGKTLKADKAKKMGIVDQLVEPL 271
D + G+ +K +A+++G+V + +
Sbjct: 448 DAVRSRIGQAIKPVEAERLGLVTASPDDI 476
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 184 bits (470), Expect = 1e-56
Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
+ + L K NS + E E + + I+ D I+ VI+ P F AGADI+
Sbjct: 17 DGIAEIHLHIN--KSNSYDLEFYKEFNAAIDDIRFDPDIK-VVIVMSDVPKFFSAGADIN 73
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
L + Q + L +I SP+ +A + G +GGGLE+ALAC R
Sbjct: 74 FLRS-ADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMG--- 129
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
D+ +GLPEV LG+L G GGTQRL +L LDM +T
Sbjct: 130 --------------------DEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNIT 169
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIK 308
G+T+ +A ++G+V+++ E A +LA+ ++ IK
Sbjct: 170 GETITPQEALEIGLVNRVFPQ-------------AETRERTREYARKLANSATYAVSNIK 216
Query: 309 PMI---PDKVLDVALKFE 323
I + L+VA+++E
Sbjct: 217 LAIMNGKEMPLNVAIRYE 234
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 185 bits (471), Expect = 1e-56
Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 45/280 (16%)
Query: 48 MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS 107
MG AQT+ + + A + + + P N++ +V EI + +
Sbjct: 9 MGTLEAQTQGPGSMNEFVSVVADQGLATLVVSRP--PTNAMTRQVYREIVAAADELGRRD 66
Query: 108 SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167
I AV++ G F AG D+ L A + ++ + + + + PKP VAA++G
Sbjct: 67 DIG-AVVLFGGHEIFSAGDDMPELRT-LNAPEADTAARVRLEAIDAVAAIPKPTVAAVTG 124
Query: 168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG 227
LG GL +ALA +R++ + K G E++ GL+PG
Sbjct: 125 YALGAGLTLALAADWRVSGDNVK------------------------FGATEILAGLIPG 160
Query: 228 AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLE 287
GG RL ++ ++ +G+ A++A +G++D +V P + +
Sbjct: 161 GGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAP-------------DDVY 207
Query: 288 EVAVNTASQLAS-GKLKINRIKPMI---PDKVLDVALKFE 323
+ AV A + + K +I + E
Sbjct: 208 DSAVAWARRYLECPPRALAAAKAVINDVFELEATERAAAE 247
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 183 bits (466), Expect = 2e-56
Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 55/261 (21%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +TL++ KVN+++ +V+ + L + + D R+ VI++G+PG G D+ +
Sbjct: 14 DGVATLTLNNG--KVNAISPDVIIAFNAALDQAEKD---RAIVIVTGQPGILSGGYDLKV 68
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ +A+ + G + + S P PI+ A G + G + L+ YRI V
Sbjct: 69 MT--SSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPF 126
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+ +GL EV +G+ G + +
Sbjct: 127 S-----------------------IGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINA 163
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KL 302
+ + A G +D++V E L+ A+ A+QL KL
Sbjct: 164 EMFDPEGAMAAGFLDKVVSV-------------EELQGAALAVAAQLKKINMNAHKKTKL 210
Query: 303 KINRIKPMIPDKVLDVALKFE 323
K+ + LD A++ +
Sbjct: 211 KVRK----GLLDTLDAAIEQD 227
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 182 bits (465), Expect = 3e-56
Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 54/261 (20%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
+ V+ +D KVN L + + + D+ + A++I+G F G D+ +
Sbjct: 13 DAIGVIRMDDG--KVNVLGPTMQQALNEAIDAADRDN-VG-ALVIAGNHRVFSGGFDLKV 68
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
L + A + + G ++ + S PKP+V A +G + G + + +R+A
Sbjct: 69 LTS-GEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYN 127
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+ EV +G+ + L
Sbjct: 128 ------------------------VQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLA 163
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KL 302
KT + A G +D++ P E + A A + A KL
Sbjct: 164 KTFFGETALAAGFIDEISLP-------------EVVLSRAEEAAREFAGLNQQAHNATKL 210
Query: 303 KINRIKPMIPDKVLDVALKFE 323
+ K + +
Sbjct: 211 RARA----EALKAIRAGIDGI 227
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 180 bits (460), Expect = 6e-55
Identities = 64/257 (24%), Positives = 116/257 (45%), Gaps = 39/257 (15%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
++V+ ++ K NSL+ ++ + + ++SD +R+ +I S PG F AGAD+
Sbjct: 20 RGIVVLGINRAYGK-NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A ++ +V + ++++I + P P +AAI G LGGGLE+ALAC R+A K
Sbjct: 79 RAK-MSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK 137
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+GL E L ++PG GGTQRLP+ + ++ +
Sbjct: 138 ------------------------MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSA 173
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
+ L +AK +G++ ++ + + + A++ A + G + + K
Sbjct: 174 RVLDGKEAKAVGLISHVL---------EQNQEGDAAYRKALDLAREFLPQGPVAMRVAKL 224
Query: 310 MI---PDKVLDVALKFE 323
I + L L E
Sbjct: 225 AINQGMEVDLVTGLAIE 241
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 180 bits (459), Expect = 1e-54
Identities = 55/259 (21%), Positives = 96/259 (37%), Gaps = 45/259 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G VL T ++P +N + EV+ ++ ++L + ++ R + S F D++
Sbjct: 16 GTVLSATFNAP--PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTK 73
Query: 131 LAACKTADQVKQ---ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
+ TA+ K S + ++ P +A + G G G E LAC R A +
Sbjct: 74 VPE-YTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASR 132
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
+ LG PEV +G PGAG Q L +L L+
Sbjct: 133 E-----------------------NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAV 169
Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINR 306
LT AD A++ G V++ V L+E A++++ + +
Sbjct: 170 LTSSDFDADLAERYGWVNRAVPD-------------AELDEFVAGIAARMSGFPRDALIA 216
Query: 307 IKPMI--PDKVLDVALKFE 323
K I ++ +
Sbjct: 217 AKSAINAISLPAPAEVRAD 235
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 178 bits (455), Expect = 3e-54
Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 46/257 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G VL + L+ P K N+LN +M+ ++ L I IR AV+I G F AG D+S
Sbjct: 24 GPVLTIGLNRPK-KRNALNDGLMAALKDCLTDI--PDQIR-AVVIHGIGDHFSAGLDLSE 79
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
L + A + S++ ++ +I+ P++AA+ G+ +GGGLE+A A H R+A
Sbjct: 80 LRE-RDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAY 138
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
LPE G+ G GG+ RLP+L + + DM LTG
Sbjct: 139 ------------------------YALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTG 174
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
+ A + G L+E + A+ +++A L +
Sbjct: 175 RVYSAAEGVVHGFSQYLIEN-------------GSAYDKALELGNRVAQNAPLTNFAVLQ 221
Query: 310 MIP---DKVLDVALKFE 323
+P + L E
Sbjct: 222 ALPMIAEANPQTGLLME 238
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 178 bits (454), Expect = 5e-54
Identities = 60/259 (23%), Positives = 96/259 (37%), Gaps = 45/259 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V + LD+P VN + + +M E++++L + DSS+R V S P F+A D+ +
Sbjct: 17 HGVARIILDNP--PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRI 74
Query: 131 LAACKTADQVKQISKSG-----QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
A Q S Q + I P+ + ++G GGG E A A
Sbjct: 75 GEK-MDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFA 133
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
+ GLG E ++G++PG GGTQ L L+
Sbjct: 134 AAE-----------------------TAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALE 170
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKI 304
+ LT A+ A G +++ + + L+E A +A+ I
Sbjct: 171 VVLTADLFDAETAASYGWINRALPA-------------DELDEYVDRVARNIAALPDGVI 217
Query: 305 NRIKPMIPDKVLDVALKFE 323
K +P L L E
Sbjct: 218 EAAKRSLPADDLKEGLLGE 236
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 177 bits (451), Expect = 8e-54
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 41/234 (17%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAG 125
+ A V+ ++L+ NSL+ ++ E+Q+IL +I +++ R VI++G F AG
Sbjct: 13 DYATPHVVKISLNRERQA-NSLSLALLEELQNILTQINEEANTR-VVILTGAGEKAFCAG 70
Query: 126 ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
AD+ A +QV+ + + +E P+P++AAI+G LGGG E++LAC +RIA
Sbjct: 71 ADLKERAG-MNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIA 129
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
+ LGL E L ++PGAGGTQRLP+L + +
Sbjct: 130 AESAS------------------------LGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 165
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
+ TG+ + A +AK+ G+V+ +V LEE A+ A ++AS
Sbjct: 166 LIYTGRRISAQEAKEYGLVEFVVPV-------------HLLEEKAIEIAEKIAS 206
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 171 bits (435), Expect = 2e-51
Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 46/257 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V ++ L P V +N+L+ ++++EI + + + +R ++++G+ F AGADI
Sbjct: 13 GAVGIIELARPDV-LNALSRQMVAEIVAAVEAFDRNEKVR-VIVLTGRGRAFAAGADIQE 70
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+A +++ +++ + P++AA++G LGGG E+AL+C +A +
Sbjct: 71 MAK-DDPIRLEWLNQFAD--WDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
G PEV LG++PGAGGTQRL KL L+ TG
Sbjct: 128 ------------------------FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTG 163
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
+ A +A+++GIV+++V P E L E + A +LA L + IK
Sbjct: 164 ARMSAKEAEQLGIVNRVVSP-------------ELLMEETMRLAGRLAEQPPLALRLIKE 210
Query: 310 MI---PDKVLDVALKFE 323
+ D L ++FE
Sbjct: 211 AVQKAVDYPLYEGMQFE 227
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 171 bits (436), Expect = 2e-51
Identities = 70/257 (27%), Positives = 112/257 (43%), Gaps = 46/257 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V ++TL+ P +N+LNS+VM+E+ S + D I A+II+G F AGADI
Sbjct: 33 QRVGIITLNRPQA-LNALNSQVMNEVTSAATELDDDPDIG-AIIITGSAKAFAAGADIKE 90
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+A + ++ + P +AA++G LGGG E+A+ C IA K
Sbjct: 91 MA---DLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAK 147
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
G PE+ LG+LPG GG+QRL + +D+ LTG
Sbjct: 148 ------------------------FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTG 183
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
+T+ A +A++ G+V ++V + L A TA+ ++ K
Sbjct: 184 RTMDAAEAERSGLVSRVVPA-------------DDLLTEARATATTISQMSASAARMAKE 230
Query: 310 MI---PDKVLDVALKFE 323
+ + L L +E
Sbjct: 231 AVNRAFESSLSEGLLYE 247
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 170 bits (433), Expect = 4e-51
Identities = 66/262 (25%), Positives = 111/262 (42%), Gaps = 46/262 (17%)
Query: 66 KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG 125
K+ V ++ L+ P +N+L + ++ E+ L + D ++ A++++G F AG
Sbjct: 10 KKGKNSSVGLIQLNRPKA-LNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAG 67
Query: 126 ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
ADI + S I KP++AA++G LGGG E+A+ C A
Sbjct: 68 ADIKEMQ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYA 124
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
+ + G PE++LG +PGAGGTQRL + ++
Sbjct: 125 GEKAQ------------------------FGQPEILLGTIPGAGGTQRLTRAVGKSLAME 160
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKI 304
M LTG + A AK+ G+V ++ E L E A+ A ++A+ K+ +
Sbjct: 161 MVLTGDRISAQDAKQAGLVSKIFPV-------------ETLVEEAIQCAEKIANNSKIIV 207
Query: 305 NRIKPMI---PDKVLDVALKFE 323
K + + L K E
Sbjct: 208 AMAKESVNAAFEMTLTEGNKLE 229
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 170 bits (433), Expect = 5e-51
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 46/261 (17%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
+ V V ++ LD P +N+LN + +E+ R +D I A++++G F AGA
Sbjct: 14 SRPVAGVGLIRLDRPDA-LNALNQTLEAEVLDAARDFDADLEIG-AIVVTGSERAFAAGA 71
Query: 127 DISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
DI+ + T Q ++ ++ + KPIVAA++G LGGG E+A+ C IA
Sbjct: 72 DIAEMVT-LTPHQARE--RNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAA 128
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
+ G PE+ LG+LPG GGTQRL + +D+
Sbjct: 129 DTAR------------------------FGQPEITLGILPGLGGTQRLTRAVGKAKAMDL 164
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKIN 305
LTG++L A++A+++G+V ++V L + A+ A ++A +
Sbjct: 165 CLTGRSLTAEEAERVGLVSRIVPA-------------ADLLDEALAVAQRIARMSRPAGR 211
Query: 306 RIKPMI---PDKVLDVALKFE 323
+K I ++ L +++E
Sbjct: 212 AVKDAINEAFERPLSAGMRYE 232
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 169 bits (430), Expect = 1e-50
Identities = 54/267 (20%), Positives = 95/267 (35%), Gaps = 49/267 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG--CFIAGADI 128
V V+ + K+N+L+ + ++ L + IR +I+ G F AG DI
Sbjct: 12 NKVAVIEFNYGR-KLNALSKVFIDDLMQALSDLNRPE-IR-CIILRAPSGSKVFSAGHDI 68
Query: 129 SMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
L + D + +QI I+ PKPI++ + GS GG E+ ++ IA
Sbjct: 69 HELPS-GGRDPLSY-DDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST 126
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
+ V LG+ G L + V ++
Sbjct: 127 ST------------------------FSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIF 162
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRI 307
T + A +A +GI++ +VE E LE+ + A ++ L I I
Sbjct: 163 TASPITAQRALAVGILNHVVEV-------------EELEDFTLQMAHHISEKAPLAIAVI 209
Query: 308 KPMI---PDKVLDVALKFEFVRNQIFG 331
K + + + +FE +
Sbjct: 210 KEELRVLGEAHTMNSDEFE-RIQGMRR 235
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 168 bits (428), Expect = 2e-50
Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 39/234 (16%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
+ +L V + + G + E I D R VI++G ++A
Sbjct: 28 HRDENGILEVRMHTNGSS-LVFTGKTHREFPDAFYDISRDRDNR-VVILTGSGDAWMAEI 85
Query: 127 DISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
D L + + G+++L + P+++A++G+ L E L +A
Sbjct: 86 DFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILAS 144
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
++ +P + G++PG G P L
Sbjct: 145 ENTVFQ-----------------------DMPHLNAGIVPGDGVHILWPLALGLYRGRYF 181
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
T + L A +A ++ +V +++ L E A A LA
Sbjct: 182 LFTQEKLTAQQAYELNVVHEVLPQ-------------SKLMERAWEIARTLAKQ 222
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 169 bits (430), Expect = 3e-50
Identities = 51/313 (16%), Positives = 108/313 (34%), Gaps = 53/313 (16%)
Query: 48 MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGV---KVNSLNSEVMSEIQS----IL 100
M + ST E+ DV + + + ++ ++ +I +
Sbjct: 17 MSAVQPFIRTNIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLG 76
Query: 101 RRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQI------LSEI 154
+R+ + + V+++ F G D+++ ++ Q+
Sbjct: 77 QRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVG 136
Query: 155 ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG 214
+ +A + G+ LGGG E AL+CH IA +
Sbjct: 137 LGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVM------------------------ 172
Query: 215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPG 274
+GLPEV+ L PG G + + + + L G A++ MG+VD++V
Sbjct: 173 MGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVV------ 226
Query: 275 LNHPEERTMEYLEEVA-VNTASQLASGKLK--INRIKPMIPDKVLDVALKFEFVRNQIFG 331
P + + +E+V + + A ++ + L+ ++ +
Sbjct: 227 ---PRGQGVAAVEQVIRESKRTPHAWAAMQQVREMTTAV----PLEEMMRITEIWVDTAM 279
Query: 332 KAKEKVMKMSGGL 344
+ EK ++ L
Sbjct: 280 QLGEKSLRTMDRL 292
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 165 bits (421), Expect = 2e-49
Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 45/258 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
+V V+TLD P K N + + + ++ L R +D S+R AV++ G F AG D +
Sbjct: 8 DEVRVITLDHPN-KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFN 65
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
+ ++ +++ + + + KP +AA+ G +G G + AL R+
Sbjct: 66 EVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTA 125
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
+PE+ G+ G L + ++
Sbjct: 126 N------------------------FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQ 160
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIK 308
++L A + +V+Q+VE L + A+ A +AS K
Sbjct: 161 CQSLDAPRCVDYRLVNQVVES-------------SALLDAAITQAHVMASYPASAFINTK 207
Query: 309 PMI---PDKVLDVALKFE 323
+ +L+
Sbjct: 208 RAVNKPFIHLLEQTRDAS 225
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 165 bits (420), Expect = 3e-49
Identities = 50/261 (19%), Positives = 87/261 (33%), Gaps = 48/261 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G VL+VT+ + G K S E+ I D + VI++G F D +
Sbjct: 24 GGVLLVTVHTEG-KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTS 81
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
T +I GQ++L+ + S P++AA++G + E+ + +A +
Sbjct: 82 FNL-GTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAESAT 139
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
P G++PG G P + LTG
Sbjct: 140 FQ-----------------------DGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTG 176
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KL 302
+ L A A G V++++ + L A A +A +
Sbjct: 177 QELDARTALDYGAVNEVLSE-------------QELLPRAWELARGIAEKPLLARRYARK 223
Query: 303 KINRIKPMIPDKVLDVALKFE 323
+ R + + L + L E
Sbjct: 224 VLTRQLRRVMEADLSLGLAHE 244
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 163 bits (416), Expect = 2e-48
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 43/257 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V+++T++ P + N+L++ ++S+ + I D IR A I++G + G D+S
Sbjct: 17 GPVVILTMNRPHRR-NALSTNMVSQFAAAWDEIDHDDGIR-AAILTGAGSAYCVGGDLSD 74
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ + + L + KP++AA++G+CLGGG E+ R++ +
Sbjct: 75 GWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHAT 134
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
GLPEV GL+PGAG RL + ++M LTG
Sbjct: 135 ------------------------FGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTG 170
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
+ L A +A G+V +V + A + A ++ G L + K
Sbjct: 171 EPLTAFEAYHFGLVGHVVPA-------------GTALDKARSLADRIVRNGPLAVRNAKE 217
Query: 310 MI---PDKVLDVALKFE 323
I + A E
Sbjct: 218 AIVRSGWLAEEDARAIE 234
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 163 bits (415), Expect = 3e-48
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
A VL V L+ P K N++N E+ ++I DS R AV++SG F +G
Sbjct: 8 TSAQKHVLHVQLNRPE-KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGI 65
Query: 127 DISMLA----------ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEV 176
D+ +A + A ++ + Q+ + IE PKP++AAI G C+GGG+++
Sbjct: 66 DLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDL 125
Query: 177 ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK 236
AC R +D + EV +GL G QRLPK
Sbjct: 126 ISACDIRYCTQDAF------------------------FQVKEVDVGLAADVGTLQRLPK 161
Query: 237 LTALPN-VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS 295
+ + V ++T T + + AD+A G+V ++ + + A A+
Sbjct: 162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFP------------DKDVMLNAAFALAA 209
Query: 296 QLAS 299
++S
Sbjct: 210 DISS 213
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 163 bits (414), Expect = 3e-48
Identities = 48/231 (20%), Positives = 79/231 (34%), Gaps = 42/231 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS- 129
G VL + ++ P K N+L E+ I L + +R V++ G F AG D+
Sbjct: 13 GGVLTLAINRPEAK-NALYGELYLWIAKALDEADQNKDVR-VVVLRGAEHDFTAGNDMKD 70
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
+ + + +L KP++ A+ G +G G+ + L A
Sbjct: 71 FMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTA 130
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
+P V LGL P G +Q L K ++ T
Sbjct: 131 L------------------------FQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFT 166
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
K A+ A + G+V+++VE A TA L +
Sbjct: 167 AKKFNAETALQAGLVNEIVED---------------AYATAQATAQHLTAL 202
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 162 bits (412), Expect = 5e-48
Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 42/234 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
D L +TLD P K N L++E+ + + +R +++SI ++I+ K F +G +
Sbjct: 12 NDALYITLDYPEKK-NGLDAELGTSLLEAIRAGNNETSIH-SIILQSKHRAYFSSGPRLE 69
Query: 130 MLAAC---KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
L C ++ +++++ + EI +SPK VA I+G GGG + LAC RIA+
Sbjct: 70 DLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIAL 129
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
+ K +G+ P G + LP++ +++
Sbjct: 130 RRAK------------------------FLENFHKMGISPDLGASYFLPRIIGYEQTMNL 165
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
L GK +++A ++G++ ++ E + L+E N ++ G
Sbjct: 166 LLEGKLFTSEEALRLGLIQEICENK------------QELQERVKNYLKAVSEG 207
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 162 bits (412), Expect = 5e-48
Identities = 54/257 (21%), Positives = 93/257 (36%), Gaps = 43/257 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G VLV+ L+ P + N+ + ++ E+ L ++D+ +R A ++ G+ F AG D++
Sbjct: 17 GYVLVIGLNRPAKR-NAFDKTMLEELALALGEYETDTDLR-AAVLYGEGPLFTAGLDLAS 74
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+AA + KP++ A+ G L G+E+ALA IA +
Sbjct: 75 VAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETAT 134
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
EV G+ P G T R P+ N + LT
Sbjct: 135 ------------------------FAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTA 170
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
T A +A ++GIV ++V + A+ A +A L +
Sbjct: 171 DTFDAVEAHRIGIVQEIVPV-------------GEHVDTAIAIAQTIARQAPLGVQATLR 217
Query: 310 MI---PDKVLDVALKFE 323
+ A +
Sbjct: 218 NARLAVREGDAAAEEQL 234
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 161 bits (411), Expect = 6e-48
Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 41/230 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G + ++ LD G + N+ +S +++++ + + R ++ F AG D+
Sbjct: 20 GHLFLIGLDRAGKR-NAFDSAMLADLALAMGEYERSEESR-CAVLFAHGEHFTAGLDLME 77
Query: 131 LAACKTADQVKQISKSGQQILSEIESS-PKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
LA K A + G ++ KP+V A+ G+C G+E+ L +A +
Sbjct: 78 LAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGT 136
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
+ EV+ G+ P G T R P+ + + LT
Sbjct: 137 R------------------------FAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILT 172
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
G AD+A +M ++ ++VEP A+ A ++A
Sbjct: 173 GDEFDADEALRMRLLTEVVEP-------------GEELARALEYAERIAR 209
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 162 bits (412), Expect = 6e-48
Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 48/253 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
VL + L P + N+LNS+++ E+ +R+ D S R A++++G+ F AGAD+S
Sbjct: 29 EAVLTIELQRPERR-NALNSQLVEELTQAIRKAG-DGSAR-AIVLTGQGTAFCAGADLSG 85
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A ++ +++SP P+V AI+G +G GL++A+ C R+ D
Sbjct: 86 DA------FAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAF 139
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
P GL +RL L M L+
Sbjct: 140 ------------------------FQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSA 175
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPM 310
+ L A+ A G+ +++ + E+A + K +N
Sbjct: 176 EKLTAEIALHTGMANRIG---------TLADAQAWAAEIARLAPLAIQHAKRVLND---- 222
Query: 311 IPDKVLDVALKFE 323
D ++ A
Sbjct: 223 --DGAIEEAWPAH 233
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 161 bits (410), Expect = 1e-47
Identities = 58/267 (21%), Positives = 100/267 (37%), Gaps = 53/267 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +TL+ P + N+L++E+ S L Q+D + VI++G F AG D+
Sbjct: 17 DRVRTLTLNRPQSR-NALSAELRSTFFRALSDAQNDDDVD-VVIVTGADPVFCAGLDLKE 74
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
L + I + KP++ AI+G+ + GGLE+AL C IA ++ K
Sbjct: 75 LGD----------TTELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAK 124
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+GL+P G + RLP+ + M+LTG
Sbjct: 125 ------------------------FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTG 160
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
L A A + G+V ++V + L A A+ + + + +
Sbjct: 161 DYLSAQDALRAGLVTEVVAH-------------DDLLTAARRVAASIVGNNQKAVRALLD 207
Query: 310 MI---PDKVLDVALKFEFVRNQIFGKA 333
AL E + + ++
Sbjct: 208 SYHRIDALQTGGALWAEAEAARQWMRS 234
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 161 bits (411), Expect = 1e-47
Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 41/235 (17%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
E VL + LDSP +NS+ ++ ++ + I D +R V++ G+ F +G
Sbjct: 18 EPGEHGVLNLVLDSP--GLNSVGPQMHRDLADVWPVIDRDPDVR-VVLVRGEGKAFSSGG 74
Query: 127 DIS-MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
+ + +I + + ++ + + KP+V+AI G +G GL VAL +A
Sbjct: 75 SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
K + LG+ G P L +
Sbjct: 135 SATAK------------------------IIDGHTKLGVAAGDHAAICWPLLVGMAKAKY 170
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
LT +TL ++A+++G+V V+ + + A A LA G
Sbjct: 171 YLLTCETLSGEEAERIGLVSTCVDD-------------DEVLPTATRLAENLAQG 212
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 161 bits (409), Expect = 1e-47
Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 39/230 (16%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +TL+ P N+ N + L D + V+++G F AG D++
Sbjct: 14 NRVRTLTLNRPEAL-NAFNEALYDATAQALLDAADDPQVA-VVLLTGSGRGFSAGTDLAE 71
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ A T + + ++ + PKP++ A++G +G G + +
Sbjct: 72 MQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTAR 131
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
L P LG+ P A + LP+L N + ++
Sbjct: 132 ------------------------LKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSS 167
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ + A++A +MG+V ++ P E L A A LA+
Sbjct: 168 EWIDAEEALRMGLVWRICSP-------------EELLPEARRHAEILAAK 204
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 160 bits (408), Expect = 3e-47
Identities = 46/237 (19%), Positives = 92/237 (38%), Gaps = 34/237 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS- 129
G + ++TL+ P NS+N ++ + + +R+ D + R A +I+G F AG D
Sbjct: 36 GALRIITLNRPDSL-NSVNDDLHVGLARLWQRLTDDPTAR-AAVITGAGRAFSAGGDFGY 93
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
+ AD + + G++I+ + P+VAA++G +G G + ++
Sbjct: 94 LKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENA 153
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
L P V +GL+ GG P +L + LT
Sbjct: 154 Y------------------------LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALT 189
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
G + A +A ++G+ + + + + +++ + S K +N
Sbjct: 190 GTRISAQRAVELGLANHVADDP-------VAEAIACAKKILELPQQAVESTKRVLNI 239
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 159 bits (405), Expect = 3e-47
Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 45/230 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V+ +T+ + N + ++ ++ + + + VI++G F +GA
Sbjct: 11 NGVVQITMKDESSR-NGFSPSIVEGLRHCFSVVAQNQQYK-VVILTGYGNYFSSGASKEF 68
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
L + + I PI+AA+ G GGGL + L + + ++
Sbjct: 69 LIRKTRGE------VEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESV 122
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+ G P + L + +M TG
Sbjct: 123 ------------------------YATNFMKYGFTPVGATSLILREKLGSELAQEMIYTG 158
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ + + + GI +V + + A ++A
Sbjct: 159 ENYRGKELAERGIPFPVVSR-------------QDVLNYAQQLGQKIAKS 195
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 160 bits (407), Expect = 4e-47
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 41/231 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G L+VT++ P + N+L+ E+M + R+ +D IR I++G G F AG D+
Sbjct: 28 GHTLIVTMNRPSRR-NALSGEMMQIMVEAWDRVDNDPDIR-CCILTGAGGYFCAGMDLKA 85
Query: 131 LAACKTADQVKQ--ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
D K S L + KP++AA+ G + GG E+ R+A +
Sbjct: 86 ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAES 145
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
K G+ E L P G RL + D+ L
Sbjct: 146 AK------------------------FGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLL 181
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
TG+ + A +AK+MG+V +V A+ A +A+
Sbjct: 182 TGRHITAAEAKEMGLVGHVVPD-------------GQALTKALEIAEIIAA 219
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 159 bits (405), Expect = 5e-47
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 33/224 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V V+TL P + NS E+ ++ + +R+ D ++R ++++G P F +GA IS
Sbjct: 15 DGVAVLTLHGPSTR-NSFTVELGRQLGAAYQRLDDDPAVR-VIVLTGAPPAFCSGAQISA 72
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A T + S + P++AA++G +G G+ +AL RI ++ +
Sbjct: 73 AAE--TFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGR 130
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+P+V G+ P A LP+L ++ LTG
Sbjct: 131 ------------------------YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTG 166
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
+ A +A + G+ ++ + + ++A N A
Sbjct: 167 ASFSAQRAVETGLANRCLPA-----GKVLGAALRMAHDIATNVA 205
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 159 bits (404), Expect = 1e-46
Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 47/269 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
+ V L+ P + N+++ + E+ +L ++ D + ++++G + AG D+
Sbjct: 17 DGIAFVILNRPEKR-NAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAGEAWTAGMDLKE 74
Query: 131 LA----ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
A Q K ++ Q + KP +A ++G C GGG +AC I
Sbjct: 75 YFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICA 134
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
+ GL E+ G+ PG ++ + L
Sbjct: 135 DEAT------------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLMY 170
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKIN 305
+TGKT KA +MG+V++ V L EV + A L + +
Sbjct: 171 IMTGKTFGGQKAAEMGLVNESVPL-------------AQLREVTIELARNLLEKNPVVLR 217
Query: 306 RIKPMI---PDKVLDVALKFEFVRNQIFG 331
K + + + + +
Sbjct: 218 AAKHGFKRCRELTWEQNEDYLYAKLDQSR 246
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 158 bits (401), Expect = 2e-46
Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 46/259 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V VV L+ P + N L+ E+ + L +++D +R AV+++G+ F AGAD++
Sbjct: 7 GHVAVVFLNDPERR-NPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAF 64
Query: 131 LA--ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
L A++ + S S ++ + + PKP VAA++G + GG +ALAC + ++
Sbjct: 65 LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
+ LG EV +G + + L + D+ L
Sbjct: 125 AR------------------------LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLL 159
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRI 307
TG+ ++A +AK +G+V+++ P E A A ++A +
Sbjct: 160 TGRLVEAREAKALGLVNRIAPP-------------GKALEEAKALAEEVAKNAPTSLRLT 206
Query: 308 KPMI---PDKVLDVALKFE 323
K ++ P L+ +
Sbjct: 207 KELLLALPGMGLEDGFRLA 225
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 156 bits (398), Expect = 5e-46
Identities = 38/254 (14%), Positives = 78/254 (30%), Gaps = 40/254 (15%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
TL P K N+L++E++ + + + + ++ +G F AG D +
Sbjct: 15 PAAWTFTLSRPE-KRNALSAELVEALIDGVDAAHREQ-VP-LLVFAGAGRNFSAGFDFTD 71
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
++ + + +L + SP +A G G G+++ AC +R +
Sbjct: 72 YET-QSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+P + GL+ GT+R + L + +
Sbjct: 131 ------------------------FRMPGLKFGLVL---GTRRFRDIVGADQALSILGSA 163
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPM 310
+ AD+A+++G V E + A+ +
Sbjct: 164 RAFDADEARRIGFVRDCAAQ-----AQWPALIDAAAEAATALDPATRATLHRVLRDDHDD 218
Query: 311 IPDKVLDVALKFEF 324
AL
Sbjct: 219 A----DLAALARSA 228
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 155 bits (393), Expect = 3e-45
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 45/229 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
+L++T++ P K NS+N+ V + + R+ +D+ + I++G G F AG D+
Sbjct: 23 DRILIITINRPKAK-NSVNAAVSRALADAMDRLDADAGLS-VGILTGAGGSFCAGMDLKA 80
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
A + G+ + KP++AA+ G L GG E+ALA +A +D
Sbjct: 81 FARGENVVV------EGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSA 134
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
G+PEV GL+ G GG RLP+ +++ LTG
Sbjct: 135 ------------------------FGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTG 170
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
L A++A +G+V+ L EP + A+ A ++ +
Sbjct: 171 DNLSAERAHALGMVNVLAEP-------------GAALDAAIALAEKITA 206
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 154 bits (391), Expect = 7e-45
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 42/230 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
G+V+V+T++ P + N++N+ V + L Q D +R AV+++G F AGAD+
Sbjct: 17 GNVMVITINRPEAR-NAINAAVSIGVGDALEEAQHDPEVR-AVVLTGAGDKSFCAGADLK 74
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
+A + + G KP +AA++G+ LGGG E+ALA +A +
Sbjct: 75 AIAR-RENLYHPDHPEWGFAGYVR-HFIDKPTIAAVNGTALGGGTELALASDLVVADERA 132
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
+ GLPEV GL+ AGG R+ + + + LT
Sbjct: 133 Q------------------------FGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLT 168
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
G+ L A A+ G+++++VE + + A+ AS +
Sbjct: 169 GEPLSAAAARDWGLINEVVEA-------------GSVLDAALALASAITV 205
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 153 bits (390), Expect = 9e-45
Identities = 50/237 (21%), Positives = 82/237 (34%), Gaps = 43/237 (18%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
K G ++ NSLN EVM E+QS L +D S V++S F G
Sbjct: 10 RKQDGFTHILLSTKSSEN-NSLNPEVMREVQSALSTAAADDSK--LVLLSAVGSVFCCGL 66
Query: 127 DISMLAACKTAD---QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
D T D + +++++ + ++ KPI+ A++G +G G + C
Sbjct: 67 DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 126
Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
A + P G P T PK+ +
Sbjct: 127 WANEKAW------------------------FQTPYTTFGQSPDGCSTVMFPKIMGGASA 162
Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+M L+G+ L A +A G+V Q+ P + + +LAS
Sbjct: 163 NEMLLSGRKLTAQEACGKGLVSQVFWP-------------GTFTQEVMVRIKELASC 206
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 153 bits (389), Expect = 1e-44
Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 41/230 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V +TL+ P N+ ++ +E+ L++ +D ++R V+I+G F AG D+S
Sbjct: 11 GQVAWLTLNRPDQL-NAFTEQMNAEVTKALKQAGADPNVR-CVVITGAGRAFCAGEDLSG 68
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ D + ++ + KP+VAA++G+ G G+ +ALAC +R+ +
Sbjct: 69 VTE--EMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
+ +GL+P AG LP+L L++ + G
Sbjct: 127 ------------------------FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLG 162
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ + A++A +G+ +++ EE A +L++
Sbjct: 163 EKVTAEEAAALGLATKVIPL-------------SDWEEEVKQFAERLSAM 199
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 152 bits (387), Expect = 2e-44
Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 41/235 (17%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
VL +T N++ + + + R +++ +R AV++ G+ G F AG
Sbjct: 15 AWPRPGVLEITFR-GEKL-NAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGG 71
Query: 127 DISMLAACKTADQVK-QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
++ + + + ++ + ++ + P+P+VAA+ +G GL +ALA +
Sbjct: 72 SFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVV 131
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
K + L + LG+ G P L +
Sbjct: 132 GKGTR------------------------LLDGHLRLGVAAGDHAVLLWPLLVGMAKAKY 167
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
L + L ++A+++G+V VE E + E A+ A +LA G
Sbjct: 168 HLLLNEPLTGEEAERLGLVALAVED-------------EKVYEKALEVAERLAQG 209
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 151 bits (383), Expect = 1e-43
Identities = 48/265 (18%), Positives = 98/265 (36%), Gaps = 52/265 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G +TL+ P N+L+ +++E+++ ++D + ++++G F +GAD+
Sbjct: 19 GHTATITLNRPDAL-NALSPHMITELRAAYHEAENDDRVW-LLVVTGTGRAFCSGADVKE 76
Query: 131 LAACKTADQVK------QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
+ + ++ Q+ + KP++ A++G C G G++ I
Sbjct: 77 IPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVI 136
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
A + P V +GL+ G R+ ++ L
Sbjct: 137 ASEQAT------------------------FFDPHVSIGLVAG-RELVRVSRVLPRSIAL 171
Query: 245 DMTLTGK--TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GK 301
M L GK + A +A ++G++ ++VE + L E A A + S
Sbjct: 172 RMALMGKHERMSAQRAYELGLISEIVEH-------------DRLLERAHEIADIVNSNAP 218
Query: 302 LKINRIKPMI---PDKVLDVALKFE 323
L + + I + L A
Sbjct: 219 LAVRGTRLAILKGLNVPLHEAEILA 243
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 151 bits (384), Expect = 1e-43
Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)
Query: 40 MTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSI 99
M MG AQT+ + + ++ ++ +VTL+ P N++ +VM + +
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMSFVLVDRPRPEIALVTLNRPERM-NAMAFDVMLPFKQM 59
Query: 100 LRRIQSDSSIRSAVIISGKPGCFIAGADI------SMLAACKTADQVKQISKSGQQILSE 153
L I D+ +R AV+I+G F +GAD + + + +++
Sbjct: 60 LVDISHDNDVR-AVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILT 118
Query: 154 IESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKT 213
+ +P++AAI+G+ +GGGL +ALAC R+A +D
Sbjct: 119 LRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAY----------------------- 155
Query: 214 GLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLG 272
+ GL G + LP+ D+ LTG+ + AD+A+++G+V + V
Sbjct: 156 -FRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS-- 212
Query: 273 PGLNHPEERTMEYLEEVAVNTASQLASG 300
E L E ++A
Sbjct: 213 -----------ESLLEECYAIGERIAGF 229
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 150 bits (382), Expect = 2e-43
Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 43/234 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +T+ P N+L+ + M E+ L R + D S+ AV+I+G F AG +
Sbjct: 11 DGVAEITIKLPRH-RNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLRE 68
Query: 131 LAACKTA----DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
+ K D + + Q++ +I +P++AAI+G GGGL ++LA I
Sbjct: 69 IPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICA 128
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
K +G+ + L ++ + +++
Sbjct: 129 DSAK------------------------FVCAWHTIGIGNDTATSYSLARIVGMRRAMEL 164
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
LT +TL ++AK G+V ++ + EVA A +LA+
Sbjct: 165 MLTNRTLYPEEAKDWGLVSRVYPK-------------DEFREVAWKVARELAAA 205
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 150 bits (381), Expect = 2e-43
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 46/229 (20%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
VL++T++ P + N++N V + + ++ S + + II+G G F AG D+
Sbjct: 15 DRVLLITINRPDAR-NAVNRAVSQGLAAAADQLDSSADLS-VAIITGAGGNFCAGMDLKA 72
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ + + + + KPI+AA+ G L GG E+ L+C +A + K
Sbjct: 73 FVSGEAVLSERGLGFTNVPP-------RKPIIAAVEGFALAGGTELVLSCDLVVAGRSAK 125
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
G+PEV GL+ GAGG RLP +++ LTG
Sbjct: 126 ------------------------FGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTG 161
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
++ A+ A K G +++LV+ + A+ A+++ +
Sbjct: 162 ESFTAEDAAKYGFINRLVDD-------------GQALDTALELAAKITA 197
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 148 bits (377), Expect = 5e-43
Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 41/230 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
VLV+TL+ P N++ E++ + + L+ + D +R A++++G F AG D++
Sbjct: 8 DGVLVLTLNRPEKL-NAITGELLDALYAALKEGEEDREVR-ALLLTGAGRAFSAGQDLTE 65
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ + +++ + KP+V A++G G G+ +AL R+A
Sbjct: 66 FGD--RKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGAS 123
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
V +GL+P +G + LP+L L ++ L
Sbjct: 124 ------------------------FTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLS 159
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
L A++A +G+V ++V E L E A++ A +LA G
Sbjct: 160 PRLSAEEALALGLVHRVVPA-------------EKLMEEALSLAKELAQG 196
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 148 bits (377), Expect = 6e-43
Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 42/229 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V V L+ P + N+++ + + + +D ++ G G F AGAD+
Sbjct: 19 GPVTTVILNRPHAR-NAVDGPTAAALLAAFTEFDADPEAS-VAVLWGDNGTFCAGADLKA 76
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
+ + + + KP++AAISG + GG+E+AL C R+ +D
Sbjct: 77 MGTDRGNELHPH---GPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAV 133
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
LG+ G+ GGT RLP+L +D+ LTG
Sbjct: 134 ------------------------LGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTG 169
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
+ + A++A +G+V+++V E A A+++A+
Sbjct: 170 RPVHANEALDIGLVNRVVAR-------------GQAREAAETLAAEIAA 205
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 147 bits (374), Expect = 2e-42
Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 38/244 (15%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V ++T++ N+ ++++++E++ L +D+++R +++ F AGAD++
Sbjct: 12 DKVGLLTMNRISKH-NAFDNQLLTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTW 69
Query: 131 L--AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
+ A T ++ + S ++ I SPKP +A + G+ GGG +A AC IA
Sbjct: 70 MQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTS 129
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
+ EV LGL+P A + + + + +
Sbjct: 130 AR------------------------FCFSEVKLGLIP-AVISPYVVRAIGERAAKMLFM 164
Query: 249 TGKTLKADKAKKMGIVDQLVEP--LGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
+ + A +A + +V V L E T++Y +++ N + + K
Sbjct: 165 SAEVFDATRAYSLNLVQHCVPDDTL-------LEFTLKYASQISNNAPEAVKNSKQLAQY 217
Query: 307 IKPM 310
+
Sbjct: 218 VANK 221
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 146 bits (370), Expect = 1e-41
Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 43/237 (18%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
+K G +V K N+LN+EV+ EI + L +D S V+ S F G
Sbjct: 28 KKEDGFTQIVLSTRSTEK-NALNTEVIKEIVNALNSAAADDSK--LVLFSAAGSVFCCGL 84
Query: 127 DISMLAACKTADQ---VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
D ++ ++ + + ++ KPIV +++G +G G + C
Sbjct: 85 DFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLV 144
Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
A + P G P + PK+ +
Sbjct: 145 WANEKAW------------------------FQTPYTTFGQSPDGCSSITFPKMMGKASA 180
Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+M + G+ L A +A G+V Q+ + + +LAS
Sbjct: 181 NEMLIAGRKLTAREACAKGLVSQVFLT-------------GTFTQEVMIQIKELASY 224
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 146 bits (370), Expect = 2e-41
Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 38/235 (16%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
E G V ++T + ++N+ ++ + + + R ++D IR ++++G+ F AGA
Sbjct: 34 EATPGGVAIITFNRAD-RLNAWGPDLAAGFYAAIDRAEADPGIR-VIVLTGRGRGFCAGA 91
Query: 127 DISMLAACKTADQVKQ-------ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALA 179
+ A D+ G++ + KP++AAI+G C+G GL AL
Sbjct: 92 YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALM 151
Query: 180 CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA 239
C R A K GL+ G + LP+LT+
Sbjct: 152 CDVRFAAAGAK------------------------FAAVFARRGLIAEFGISWILPRLTS 187
Query: 240 LPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
LD+ L+G+T A++A ++G+V ++V P R +EY E++A +
Sbjct: 188 WAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-----EQLMPRALEYAEDIARYCS 237
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 145 bits (367), Expect = 2e-41
Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 46/230 (20%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G VL + LD P N++++ ++ E+ +R ++D S+R AV+++G F +G D++
Sbjct: 14 GAVLRIRLDRPEKL-NAVDTPMLEELSVHIRDAEADESVR-AVLLTGAGRAFCSGGDLTG 71
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
AD +++ I S PKP++A + G+ +G G +ALAC +A
Sbjct: 72 GDTAGAADA-------ANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASY 124
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
L +GL+P G + LP L M +T
Sbjct: 125 ------------------------FQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTA 160
Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ + A A + G++ + + E V + ++ G
Sbjct: 161 EKISAATAFEWGMISHITSA-------------DEYESVLTDVLRSVSGG 197
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 142 bits (360), Expect = 2e-40
Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 38/253 (15%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI-- 128
G V +TL+SP + N+L++ ++S++ LR SD ++R V+++ G F AGAD+
Sbjct: 19 GPVARLTLNSPHNR-NALSTALVSQLHQGLRDASSDPAVR-VVVLAHTGGTFCAGADLSE 76
Query: 129 --SMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
S + D + ++ ++ I S P++AAI G GG + AC +A
Sbjct: 77 AGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAG 136
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
L E +G+ P LPKL+A
Sbjct: 137 PRSS------------------------FALTEARIGVAPAIISLTLLPKLSA-RAAARY 171
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
LTG+ A +A+++G++ E L + + + +V + LA+ K
Sbjct: 172 YLTGEKFDARRAEEIGLITMAAEDL-------DAAIDQLVTDVGRGSPQGLAASKALTTA 224
Query: 307 IKPMIPDKVLDVA 319
D+ +
Sbjct: 225 AVLERFDRDAERL 237
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 140 bits (356), Expect = 1e-39
Identities = 49/269 (18%), Positives = 91/269 (33%), Gaps = 45/269 (16%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
E VL +TL + L+ +++ + LRR D + ++I G F AG
Sbjct: 11 EVLSEGVLTLTLGRA--PAHPLSRAMIAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGH 67
Query: 127 DISMLAACKTAD-----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACH 181
D+ + + V + ++ ++ ++ PKP +A + G GL++ AC
Sbjct: 68 DLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACD 127
Query: 182 YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALP 241
A + LP V G + ++
Sbjct: 128 LAYASPAAR------------------------FCLPGVQNGGFCTTPAV-AVSRVIGRR 162
Query: 242 NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
V +M LTG T AD A G++++++ + +A + L G
Sbjct: 163 AVTEMALTGATYDADWALAAGLINRILPE-----AALATHVADLAGALAARNQAPLRRGL 217
Query: 302 LKINRIKPMIPDKVLDVALKFE---FVRN 327
+NR + L+ A V +
Sbjct: 218 ETLNRHLEL----PLEQAYALATPVMVEH 242
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 140 bits (356), Expect = 1e-39
Identities = 50/278 (17%), Positives = 111/278 (39%), Gaps = 38/278 (13%)
Query: 48 MGLFRAQTECKKNSTKHF--KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQS 105
MG AQT+ + ++ +++ V+ +TL+ P N+L+ +++ + +
Sbjct: 9 MGTLEAQTQGPGSMSEPLLLQDRDERGVVTLTLNRPQAF-NALSEAMLAALGEAFGTLAE 67
Query: 106 DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI 165
D S+R AV+++ F AG D+ + A + + +++ ++ I+ P P++A +
Sbjct: 68 DESVR-AVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARV 126
Query: 166 SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL 225
G G ++ C +A +D + + + +GL
Sbjct: 127 HGIATAAGCQLVAMCDLAVATRDAR------------------------FAVSGINVGLF 162
Query: 226 PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEY 285
G L + +M +TG+ + AD AK +G+V+++V P ++
Sbjct: 163 CSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-----KALDDEIEAM 216
Query: 286 LEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFE 323
+ ++ + +A GK R ++ A
Sbjct: 217 VSKIVAKPRAAVAMGKALFYRQIETD----IESAYADA 250
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 141 bits (357), Expect = 1e-39
Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 55/286 (19%)
Query: 53 AQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSA 112
+++ + + + + + L +P K N+L+ ++ +QS + + ++
Sbjct: 23 MGAGRRESEPRPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLK-V 80
Query: 113 VIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGG 172
+IIS + F +G D+ L + D ++ ++ +++ I + P P++A ++G
Sbjct: 81 IIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAA 140
Query: 173 GLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232
G ++ +C +A P V +GL G
Sbjct: 141 GCQLVASCDIAVASDKSS------------------------FATPGVNVGLFCSTPGVA 176
Query: 233 RLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
L + L+M TG+ + A +A G++ ++V L+E +
Sbjct: 177 -LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPE-------------AELQEETMR 222
Query: 293 TASQLAS--------GKLKINRIKPMIPDKVLDVALKFE---FVRN 327
A ++AS GK + P L A V N
Sbjct: 223 IARKIASLSRPVVSLGKATFYKQLPQ----DLGTAYYLTSQAMVDN 264
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 140 bits (354), Expect = 3e-39
Identities = 48/234 (20%), Positives = 97/234 (41%), Gaps = 43/234 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V VTL P N+L E ++++ +L + ++R A++++G+ F +G D+
Sbjct: 25 DGVATVTLARPDKL-NALTFEAYADLRDLLAELSRRRAVR-ALVLAGEGRGFCSGGDVDE 82
Query: 131 LAACKTA---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
+ + ++ ++ Q++ + P P++AA+ G G G +ALA +R+A
Sbjct: 83 IIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADP 142
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDM 246
+ +GL G G LP++ L + +
Sbjct: 143 STR------------------------FAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRL 178
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ G T++A +A+++G++ +L E +E A A +LA G
Sbjct: 179 LMLGDTVRAPEAERIGLISELTEE-------------GRADEAARTLARRLADG 219
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 143 bits (363), Expect = 3e-39
Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 64/254 (25%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC--------- 121
V +T+ +N+ + + + ++++ + D +R ++ G
Sbjct: 175 DGVARLTMCRDDR-LNAEDGQQVDDMETAVDLALLDPGVR-VGLLRGGVMSHPRYRGKRV 232
Query: 122 FIAGADISMLAACKTAD---------------QVKQISKSGQQILSEIESSPKPIVAAIS 166
F AG ++ L+ + ++ + KP VAA+
Sbjct: 233 FSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVD 292
Query: 167 GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLP 226
G +GGG ++ L +A D LP G++P
Sbjct: 293 GFAIGGGAQLLLVFDRVLASSDAY------------------------FSLPAAKEGIIP 328
Query: 227 GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL 286
G RL + + L G+ + A + + +VD++VEP + L
Sbjct: 329 G-AANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEP-------------DEL 374
Query: 287 EEVAVNTASQLASG 300
+ + ++L
Sbjct: 375 DAAIERSLTRLDGD 388
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 138 bits (351), Expect = 6e-39
Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 40/230 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
+ VT++ P V N+ + ++E+ R + D ++ ++++G+ F +G D
Sbjct: 21 EGIAKVTINRPEV-RNAFTPKTVAEMIDAFSRARDDQNVS-VIVLTGEGDLAFCSGGDQK 78
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
+ + + + I PKP++A + G +GGG + + C IA +
Sbjct: 79 KRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNA 138
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
G +G G+ L ++ ++
Sbjct: 139 I------------------------FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 174
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
+ A +A MG+V+ +V E +E+ V ++
Sbjct: 175 CRQYNAQEALDMGLVNTVVPL-------------EKVEDETVQWCKEIMK 211
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 139 bits (351), Expect = 7e-39
Identities = 41/287 (14%), Positives = 81/287 (28%), Gaps = 49/287 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G ++ L +P N+L E + +L + + II F +GAD
Sbjct: 17 GPFFIIHLINPDNL-NALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKG 74
Query: 131 LAACKTADQ----------VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
+A + D V + K ++ ++G +G + C
Sbjct: 75 IAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALC 134
Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
++ DK L P LGL+ G T LP
Sbjct: 135 DIVYSINDKVY-----------------------LLYPFANLGLITEGGTTVSLPLKFGT 171
Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ + K K D + G + + P + +V ++
Sbjct: 172 NTTYECLMFNKPFKYDIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGL 224
Query: 301 KLK-INRIKPMI---PDKVLDVALKFEFVRNQIFGK---AKEKVMKM 340
L +K ++ + A E + + ++ ++
Sbjct: 225 YLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRFRQL 271
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 137 bits (348), Expect = 1e-38
Identities = 40/244 (16%), Positives = 82/244 (33%), Gaps = 36/244 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS- 129
V +T P N++N ++ E +L + ++ + + V++ G P F GAD
Sbjct: 15 ASVCYITFHRPEAN-NTINDTLIEECLQVLNQCETST-VT-VVVLEGLPEVFCFGADFQE 71
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
+ K + + + ++++ P ++ + G GGL A IA +
Sbjct: 72 IYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTA 131
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
L E++ GL P A L + MTL
Sbjct: 132 S------------------------FSLSELLFGLYP-ACVLPFLIRRIGRQKAHYMTLM 166
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKP 309
K + +A + G++D + ++L + +A K ++ +
Sbjct: 167 TKPISVQEASEWGLIDAFDAES-------DVLLRKHLLRLRRLNKKGIAHYKQFMSSLDH 219
Query: 310 MIPD 313
+
Sbjct: 220 QVSR 223
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 135 bits (343), Expect = 2e-37
Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 41/235 (17%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAG 125
EK+ + +T++ P V N+ + E+ L + D +I +I++G F +G
Sbjct: 32 EKSTDGIAKITINRPQV-RNAFRPLTVKEMIQALADARYDDNIG-VIILTGAGDKAFCSG 89
Query: 126 ADIS-MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
D D + +I + PKP+VA ++G +GGG + + C I
Sbjct: 90 GDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTI 149
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
A + G +G G G + ++
Sbjct: 150 AADNAI------------------------FGQTGPKVGSFDGGWGASYMARIVGQKKAR 185
Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
++ + A +A MG+V+ +V LE+ V ++
Sbjct: 186 EIWFLCRQYDAKQALDMGLVNTVVPL-------------ADLEKETVRWCREMLQ 227
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 136 bits (345), Expect = 2e-37
Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 56/251 (22%)
Query: 67 EKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-------K 118
+ V D + V + P V+ N+ + E+ +L + + V+++G
Sbjct: 60 HRHVDDATVRVAFNRPEVR-NAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDG 117
Query: 119 PGCFIAGADISMLA----------ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGS 168
F +G D + T D + ++ I PK ++ ++G
Sbjct: 118 GWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGW 177
Query: 169 CLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA 228
GGG + + C +A ++ + +G G
Sbjct: 178 AAGGGHSLHVVCDLTLASREYAR-----------------------FKQTDADVGSFDGG 214
Query: 229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEE 288
G+ L + ++ G+T A++ +MG V+ + E LE
Sbjct: 215 YGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-------------AELET 261
Query: 289 VAVNTASQLAS 299
V + A+++ +
Sbjct: 262 VGLQWAAEINA 272
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 135 bits (341), Expect = 2e-37
Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 43/233 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
+ + + P K N++N+E+ EI L+ D SI +++G + +G D++
Sbjct: 34 DGITKIMFNRPKKK-NAINTEMYHEIMRALKAASKDDSII--TVLTGNGDYYSSGNDLTN 90
Query: 131 LAACKTADQ---VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
K + ++ + PKP++A ++G +G + + A
Sbjct: 91 FTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD 150
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
P LG P + PK+ + +M
Sbjct: 151 RAT------------------------FHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML 186
Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ GK L A +A G+V ++ ++ A
Sbjct: 187 IFGKKLTAGEACAQGLVTEVFPD-------------STFQKEVWTRLKAFAKL 226
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 132 bits (334), Expect = 2e-36
Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 45/235 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC------FIA 124
G + + ++ P N+ + + E+ + D+ I V+++G F +
Sbjct: 18 GGIAKIVINRPHK-RNAFRPQTVFELYDAFCNAREDNRIG-VVLLTGAGPHSDGKYAFCS 75
Query: 125 GADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
G D S+ D + + I S PK ++A ++G +GGG + L C I
Sbjct: 76 GGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTI 135
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
A + G +G G G+ L ++
Sbjct: 136 AADNAI------------------------FGQTGPKVGSFDGGFGSSYLARIVGQKKAR 171
Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
++ + A +A++MG+V+ +V + LEE + A ++ S
Sbjct: 172 EIWYLCRQYSAQEAERMGMVNTVVPV-------------DRLEEEGIQWAKEILS 213
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 126 bits (319), Expect = 3e-34
Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 45/233 (19%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
+ +TL+ P N+ N E++ E+ + R D+ + +++ F AG D+
Sbjct: 28 DRIATITLNRPEAA-NAQNPELLDELDAAWTRAAEDNDVS-VIVLRANGKHFSAGHDLRG 85
Query: 131 LAACKTADQVKQI----SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
++ I S+ + + PKP +AA+ G C+ GGL + C IA
Sbjct: 86 GGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAA 145
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
+D P V++ + G ++
Sbjct: 146 EDAL------------------------FSDPVVLMDI--GGVEYHGHTWELGPRKAKEI 179
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
TG+ + A++ + G+V+++V P +R L+ A ++A
Sbjct: 180 LFTGRAMTAEEVAQTGMVNRVV---------PRDR----LDAETRALAGEIAK 219
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 119 bits (301), Expect = 3e-31
Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 67/267 (25%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
V +T + P K N++ ++ E+ +++ R D + +++SG+ F AG D+S
Sbjct: 43 DRVARITFNRPE-KGNAIVADTPLELSALVERADLDPDVH-VILVSGRGEGFCAGFDLSA 100
Query: 131 LAACKTAD-----------------------------QVKQISKSGQQILSEIESSPKPI 161
A ++ Q+ + + + KP
Sbjct: 101 YAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPT 160
Query: 162 VAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221
V I G C+ GG ++AL IA D K +G P +
Sbjct: 161 VVKIHGYCVAGGTDIALHADQVIAAADAK------------------------IGYPPMR 196
Query: 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP--LGPGLNHPE 279
+ +P AG + TG + +A + G+ + +P L +
Sbjct: 197 VWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADL-------D 246
Query: 280 ERTMEYLEEVAVNTASQLASGKLKINR 306
RT +E +A +QL KL N
Sbjct: 247 ARTERLVERIAAMPVNQLIMAKLACNT 273
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 84.8 bits (210), Expect = 2e-18
Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 38/208 (18%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
V VVTL+ +N+L+ +++ + L + D I V++ G F AG D+
Sbjct: 50 KLVGVVTLNVEK-ALNALDLDMVRAMTVQLNLWKKDPLIA-CVVLDGSGEKAFCAGGDVR 107
Query: 130 MLAACKTADQVKQISKSGQQILSE------IESSPKPIVAAISGSCLGGGLEVALACHYR 183
L A + + + E + + KP++ G +GGGL + ++
Sbjct: 108 ALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHK 167
Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
+ + + + +PEV +GL P GG+ L + +P
Sbjct: 168 VVT------------------------ETSRIAMPEVTIGLYPDVGGSYFLNR---MPGK 200
Query: 244 LD--MTLTGKTLKADKAKKMGIVDQLVE 269
+ + LT + A A +G+ D +
Sbjct: 201 MGLFLGLTAYHMNAADACYVGLADHYLN 228
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 83.5 bits (207), Expect = 5e-18
Identities = 57/209 (27%), Positives = 84/209 (40%), Gaps = 44/209 (21%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
G V+TL+ P +N+L ++ +I L++ + D +II G G F AG DI
Sbjct: 14 GCTGVITLNRPK-FLNALTLNMIRQIYPQLKKWEQDPETF-LIIIKGAGGKAFCAGGDIR 71
Query: 130 MLAACKTADQVKQISKSGQQILSE-------IESSPKPIVAAISGSCLGGGLEVALACHY 182
+++ + A Q K E + S KP VA I G +GGG V L+ H
Sbjct: 72 VISEAEKAKQ-----KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGG--VGLSVH- 123
Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
+R+ +K +PE +GL P GG LP+ L
Sbjct: 124 -------------------GQFRVA--TEKCLFAMPETAIGLFPDVGGGYFLPR---LQG 159
Query: 243 VLD--MTLTGKTLKADKAKKMGIVDQLVE 269
L + LTG LK + GI V+
Sbjct: 160 KLGYFLALTGFRLKGRDVYRAGIATHFVD 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 1e-13
Identities = 55/391 (14%), Positives = 110/391 (28%), Gaps = 107/391 (27%)
Query: 7 PAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS--TKH 64
+ + + + F + + K LM +TE ++ S T+
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFLMS--PIKTEQRQPSMMTRM 111
Query: 65 F---KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
+ +++ D V K N + +++ L ++ + V+I G G
Sbjct: 112 YIEQRDRLYNDNQVFA------KYNVSRLQPYLKLRQALLELRPAKN----VLIDGVLGS 161
Query: 122 FIAGADISMLAACKTADQVKQISKSGQQI----LSEIESSPKPIVAAISGSCLGGGLEVA 177
G + +A K K +I L +SP+ + LE+
Sbjct: 162 ---GK--TWVAL-DVCLSYKVQCKMDFKIFWLNLKN-CNSPETV------------LEML 202
Query: 178 LACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL 237
Y+I + + + ++ + + L +RL K
Sbjct: 203 QKLLYQI----DPNWTSRSD--HSSNIKLRIHSIQAEL----------------RRLLKS 240
Query: 238 TALPN---VLDMTLTGKTLKA------------DKAKKMGIVDQL---------VEPLGP 273
N VL K A K + D L ++
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK----QVTDFLSAATTTHISLDHHSM 296
Query: 274 GLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKP----MIPDKVLDVALKFEFVRNQI 329
L E L + L L N P +I + + D ++ + +
Sbjct: 297 TLTPDE--VKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWK-HV 350
Query: 330 FGKAKEKVMKMS-GGLYPAPLKS--KQGLIF 357
+++ S L PA + + +F
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-06
Identities = 64/308 (20%), Positives = 97/308 (31%), Gaps = 71/308 (23%)
Query: 4 GLYPAPLKILDVVR--TGIEKG-PSAGYEAEA---EGFSQLAMTPQSKGLMGLF----RA 53
G P L+ ++ TG +G +A AE E F K + LF R
Sbjct: 257 GFTPGELR--SYLKGATGHSQGLVTAVAIAETDSWESFFVSV----RKAITVLFFIGVRC 310
Query: 54 QTECKKNSTKHFKEKAVGDVLVVTLDSPG--VKVNSLNSEVMSEIQSILRRIQSDSSIRS 111
E N++ + D L P + +++L E ++Q + + S
Sbjct: 311 Y-EAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQE---QVQDYVNKTNSHLPAGK 364
Query: 112 AVIIS---GKPGCF-IAGADISMLAACKTADQVKQISKSGQQILSEIE------------ 155
V IS G ++G S+ T + K S Q S I
Sbjct: 365 QVEISLVNG-AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ---SRIPFSERKLKFSNRF 420
Query: 156 ---SSP------KPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRI 206
+SP P I+ + + A +I V D G L ++ + RI
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 207 V-------VK-DKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT----LTGKTLK 254
V VK + T + L G GG L LT D T + TL
Sbjct: 480 VDCIIRLPVKWETTTQFKATHI---LDFGPGGASGLGVLTH--RNKDGTGVRVIVAGTLD 534
Query: 255 ADKAKKMG 262
+ G
Sbjct: 535 INPDDDYG 542
Score = 44.7 bits (105), Expect = 4e-05
Identities = 66/383 (17%), Positives = 106/383 (27%), Gaps = 138/383 (36%)
Query: 17 RTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVV 76
R +K SA + A EG + L+ +F Q N+ +F+E L
Sbjct: 135 RPFDKKSNSALFRAVGEG---------NAQLVAIFGGQG----NTDDYFEE------LRD 175
Query: 77 TLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVI-I-------SGKPGC-FIAGAD 127
+ V V L + ++R + + + I S P ++
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 128 ISM-----------LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG-SCLGGGLE 175
IS + K +P + + + G + GL
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGF-----------------TPGELRSYLKGATGHSQGLV 278
Query: 176 VALACHYRIAVKDKKTG----------------LGL------PEVALACHYRIVVKDKKT 213
A+A IA D + +G+ P +L I+ +
Sbjct: 279 TAVA----IAETD--SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILEDSLEN 330
Query: 214 GLGLPEVMLGLLPGAGGTQ------------RLPKLT----ALPN-----VLD---MTLT 249
G+P ML + + TQ LP +L N V+ +L
Sbjct: 331 NEGVPSPMLSI---SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTM---------------EYLEEVAVNTA 294
G L KAK +DQ P ER + L +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPF-------SERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 295 SQLASGKLKINRIKPMIPDKVLD 317
L + N IP V D
Sbjct: 441 KDLVKNNVSFNAKDIQIP--VYD 461
Score = 35.4 bits (81), Expect = 0.035
Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 66/199 (33%)
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIES---SPKPIVAAISGSCLGGGLEVA 177
C++ G DI LAA + + K+ + I + I + + +P S S L
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK-SNSAL---FR-- 147
Query: 178 LACHYRIAVKDKKTGL-------GLPEV------ALACHYRIVVKDKKTGLGLPEVMLGL 224
AV + L G + L Y ++V D L
Sbjct: 148 -------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD-------------L 187
Query: 225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEER-TM 283
+ + + L +L L A+K G+ + L +P
Sbjct: 188 IKFSA--ETLSELIRTT-----------LDAEKVFTQGL------NILEWLENPSNTPDK 228
Query: 284 EYLEEVAV----NTASQLA 298
+YL + + QLA
Sbjct: 229 DYLLSIPISCPLIGVIQLA 247
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 41.1 bits (96), Expect = 2e-04
Identities = 25/176 (14%), Positives = 55/176 (31%), Gaps = 14/176 (7%)
Query: 146 SGQQILSEIESSPKPIVAAIS---GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALAC 202
+ I+ I+ S P++ + S G +AL H G P + +
Sbjct: 55 AMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQ 114
Query: 203 HYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMG 262
+ I+ + L A + R + + +L ++A K G
Sbjct: 115 NGSIIEAPPAITNYFIAYIKSL---AQESGRNATI-----AEEFITKDLSLTPEEALKYG 166
Query: 263 IVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDV 318
+++ + + L + T L +++ + P DK++
Sbjct: 167 VIEVVARDINELLKKSNGMKTKIPVNGRYVT---LNFTNVEVRYLAPSFKDKLISY 219
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional
enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid
beta oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 33.0 bits (76), Expect = 0.17
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 41 TPQSKGLMGLFRAQTECKKNS 61
+ Q+K L F A+ K S
Sbjct: 2 SGQAKALQYAFFAEKSANKWS 22
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.0
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 301 KLKINRIKPMIPDKVLDVALK 321
KL+ +K D +A+K
Sbjct: 24 KLQ-ASLKLYADDSAPALAIK 43
Score = 26.8 bits (58), Expect = 8.7
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 5/20 (25%)
Query: 334 KEKVMKMSGGL--Y-P--AP 348
K+ + K+ L Y AP
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein;
2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Length = 106
Score = 27.5 bits (61), Expect = 3.1
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 93 MSEIQSILRRIQSDSSIRSAVIIS 116
M+E++ L+R+QS ++ ++++
Sbjct: 11 MAEVEETLKRLQSQKGVQGIIVVN 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.376
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,403,404
Number of extensions: 334437
Number of successful extensions: 987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 90
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)