RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9060
(366 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 128 bits (322), Expect = 2e-35
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 66 KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG 125
K+ V ++ L+ P +N+L + ++ E+ L + D ++ + V+ G+
Sbjct: 10 KKGKNSSVGLIQLNRPK-ALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGA 68
Query: 126 ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
M + S I KP++AA++G LGGG E+A+ C A
Sbjct: 69 DIKEM----QNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYA 124
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
+ + G PE++LG +PGAGGTQRL + ++
Sbjct: 125 GEKAQ------------------------FGQPEILLGTIPGAGGTQRLTRAVGKSLAME 160
Query: 246 MTLTGKTLKADKAKKMGI 263
M LTG + A AK+ G+
Sbjct: 161 MVLTGDRISAQDAKQAGL 178
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 85.1 bits (209), Expect = 1e-19
Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 38/255 (14%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G V VV L+ P + N L+ E+ + L +++D +R AV+++G+ F AGAD++
Sbjct: 7 GHVAVVFLNDPE-RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAF 64
Query: 131 LAACKTADQVKQISKSG--QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
L + S ++ + + PKP VAA++G + GG +ALAC + ++
Sbjct: 65 LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
+ G ++ V+ + G D+ L
Sbjct: 125 ARLGYTEVKIGFVAALVSVILVRAVG-------------------------EKAAKDLLL 159
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIK 308
TG+ ++A +AK +G+V+++ P E EEVA N + L K +
Sbjct: 160 TGRLVEAREAKALGLVNRIAPP-----GKALEEAKALAEEVAKNAPTSLRLTKELLLA-- 212
Query: 309 PMIPDKVLDVALKFE 323
+P L+ +
Sbjct: 213 --LPGMGLEDGFRLA 225
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 80.2 bits (196), Expect = 9e-18
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
A VL V L+ P K N++N E+ ++I DS R AV++SG F +G
Sbjct: 8 TSAQKHVLHVQLNRPE-KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGI 65
Query: 127 DISMLAA----------CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEV 176
D+ +A+ + A ++ + Q+ + IE PKP++AAI G C+GGG+++
Sbjct: 66 DLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDL 125
Query: 177 ALACHYRIAVKD 188
AC R +D
Sbjct: 126 ISACDIRYCTQD 137
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 74.7 bits (182), Expect = 9e-16
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 59
+G YPAP++ + ++ G E EA GF++LA T S L+GLF E KK
Sbjct: 244 QAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302
Score = 72.4 bits (176), Expect = 6e-15
Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 44/282 (15%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
++ + D G VN N ++E++ + I++D+S++ VI+S FI GADI+
Sbjct: 15 SGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVK-GVIVSSGKDVFIVGADITE 73
Query: 131 LAACKTADQVKQI--SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
+ I + +I S+ E P VAAI+G LGGGLE+ LA +R+
Sbjct: 74 FVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS 133
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
K GLPEV LG+ PG GGT RLP+L + N ++
Sbjct: 134 AKI------------------------GLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIA 169
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIK 308
+GK +A+ A K+ VD +V + L A++ + SG+L +
Sbjct: 170 SGKENRAEDALKVSAVDAVVTA-------------DKLGAAALDLIKRAISGELDYKAKR 216
Query: 309 PMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
+K+ + F AK V +G YPAP++
Sbjct: 217 QPKLEKLKL----NAIEQMMAFETAKGFVAGQAGPNYPAPVE 254
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 70.9 bits (172), Expect = 1e-14
Identities = 35/268 (13%), Positives = 68/268 (25%), Gaps = 46/268 (17%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
G ++ L +P +N+L E + +L + + II F +GAD
Sbjct: 13 GPFFIIHLINPD-NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKG 70
Query: 131 LAACKTAD----------QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
+A + D V + K ++ ++G +G + C
Sbjct: 71 IAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALC 130
Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
++ DK L G L
Sbjct: 131 DIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECL---------------- 174
Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
+ K K D + G + + P + +V ++
Sbjct: 175 -------MFNKPFKYDIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGL 220
Query: 301 KLK-INRIKPMI---PDKVLDVALKFEF 324
L +K ++ + A E
Sbjct: 221 YLPSCLGMKKLLKSNHIDAFNKANSVEV 248
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 65.5 bits (158), Expect = 8e-13
Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 38/265 (14%)
Query: 62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
+H +E+ G ++V+ ++ K NSL+ ++ + + ++SD +R+ +I S PG
Sbjct: 6 VRHLEEENRG-IVVLGINRAYGK-NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGI 63
Query: 122 FIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACH 181
F A ++ +V + ++++I + P P +AAI G LGGGLE+ALAC
Sbjct: 64 FC-AGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACD 122
Query: 182 YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALP 241
R+A K +GL E L ++PG GGTQRLP+ +
Sbjct: 123 IRVAASSAK------------------------MGLVETKLAIIPGGGGTQRLPRAIGMS 158
Query: 242 NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
++ + + L +AK +G++ ++E + + L G
Sbjct: 159 LAKELIFSARVLDGKEAKAVGLISHVLE--------QNQEGDAAYRKALDLAREFLPQGP 210
Query: 302 LKINRIKPMI---PDKVLDVALKFE 323
+ + K I + L L E
Sbjct: 211 VAMRVAKLAINQGMEVDLVTGLAIE 235
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 65.5 bits (158), Expect = 1e-12
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 67 EKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG 125
+ V D + V + P V+ N+ + E+ +L + + ++ P G
Sbjct: 23 HRHVDDATVRVAFNRPEVR-NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGG 81
Query: 126 ADISMLA----------------ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSC 169
T D + ++ I PK ++ ++G
Sbjct: 82 WAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWA 141
Query: 170 LGGGLEVALACHYRI 184
GGG + + C +
Sbjct: 142 AGGGHSLHVVCDLTL 156
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218
{Thermus thermophilus [TaxId: 274]}
Length = 263
Score = 47.9 bits (112), Expect = 6e-07
Identities = 19/111 (17%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
VL +T K+N++ + + + R +++ +R+ ++ G+ +
Sbjct: 20 VLEITFRGE--KLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEE 77
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
+ + + ++ + ++ + P+P+VAA+ +G GL +ALA
Sbjct: 78 MRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 128
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 45.6 bits (106), Expect = 4e-06
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 67 EKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVI 114
E G V V+ +P VNSL+ E ++E+ L ++++D S R ++
Sbjct: 7 EPDAGAGVAVMKFKNP--PVNSLSLEFLTELVISLEKLENDKSFRGVIL 53
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia
coli [TaxId: 562]}
Length = 261
Score = 41.7 bits (96), Expect = 7e-05
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Query: 61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
S ++ + V V+ + K+N+L+ + ++ L + +I+ G
Sbjct: 2 SYQYVNVVTINKVAVIEFNYGR-KLNALSKVFIDDLMQALSDLNRPEIR--CIILRAPSG 58
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
+ A + +QI I+ PKPI++ + GS GG E+ ++
Sbjct: 59 SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS 118
Query: 181 HYRIAVKDKKTGL 193
IA +
Sbjct: 119 DLIIAASTSTFSM 131
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 40.3 bits (92), Expect = 2e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
+ L + + N+LN+EV+ E+ + L +D S V+ S F
Sbjct: 10 DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDS--KLVLFSAAGSVF 59
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 32.3 bits (73), Expect = 0.091
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 160 PIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE 219
+ ++ +G G + I V+ + L R V LG +
Sbjct: 242 FTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQ-LGGTQ 300
Query: 220 VM 221
+M
Sbjct: 301 IM 302
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 28.3 bits (62), Expect = 1.7
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 123 IAG--ADISMLAACK--TADQVKQISKSGQQILSEIESSPKPI 161
I G A L TA++ Q+ ++ +L ++ + P+ I
Sbjct: 32 IVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQI 74
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 27.0 bits (59), Expect = 3.2
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 253 LKADKAKKMGIVDQLVE 269
+ A +AK+ GI+D+++E
Sbjct: 165 MNALEAKQYGIIDEVIE 181
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 27.1 bits (58), Expect = 3.5
Identities = 4/32 (12%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 91 EVMSEIQSILRR-IQSDSSIRSAVIISGKPGC 121
+ + ++ +L +++ + G+PG
Sbjct: 23 QQLQQLDILLGNWLRNPGHHYPRATLLGRPGT 54
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 59
Score = 24.7 bits (54), Expect = 3.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 289 VAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQI 329
V+ TAS + +GK K R+ +KV+ V + + N +
Sbjct: 12 VSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 26.2 bits (57), Expect = 6.1
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 253 LKADKAKKMGIVDQLVE 269
+ A + + G +D+++
Sbjct: 174 MSAQETLEYGFIDEIMA 190
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 210
Score = 26.1 bits (57), Expect = 6.6
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 180 CHYRIAVKDKK--TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL 237
+R A + T L + +A Y +V+ G+ ++ L G + +L
Sbjct: 90 SSFRYAAPAGRNWTTADLAGMRIATAYPNLVRKDLATKGIEATVIRLD---GAVEISVQL 146
Query: 238 TALPNVLDMTLTGKTLKA 255
+ D+ +G+TL
Sbjct: 147 GVADAIADVVGSGRTLSQ 164
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 25.7 bits (56), Expect = 7.8
Identities = 4/17 (23%), Positives = 12/17 (70%)
Query: 253 LKADKAKKMGIVDQLVE 269
+ +A++ GI+D+++
Sbjct: 174 MSPMEAQEFGILDKVLV 190
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 25.6 bits (56), Expect = 8.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 253 LKADKAKKMGIVDQLVE 269
L A +A + G+VD ++
Sbjct: 164 LSAPEAVEYGLVDSILT 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.376
Gapped
Lambda K H
0.267 0.0356 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,265,855
Number of extensions: 57279
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 22
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.2 bits)