BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9061
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVY---AKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+GKG++ Y KG + + V+ L +LK + Q + DED+ M+ E V
Sbjct: 582 GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYE-QRDVTDEDIINWMMIPLCLETV 640
Query: 65 LCLEETILNSPA 76
CLE+ I+ + A
Sbjct: 641 RCLEDGIVETAA 652
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK---DEDLQLRMVSRFVNEAV 64
GRK+ KG++ Y ++ + + I+++ S +S ++ D+D+ M+ VNE
Sbjct: 312 GRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGY 371
Query: 65 LCLEETILNS 74
C+EE ++++
Sbjct: 372 RCIEEGVISN 381
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKG----SKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEA 63
G+K+GKG++ Y K K P L+ ++ Q + E++ R + +NEA
Sbjct: 312 GQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEA 371
Query: 64 VLCLEETILNSP 75
LEE + P
Sbjct: 372 FRILEEGMAARP 383
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKG----SKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEA 63
G+K+GKG++ Y K K P L+ ++ Q + E++ R + +NEA
Sbjct: 576 GQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEA 635
Query: 64 VLCLEETILNSP 75
LEE + P
Sbjct: 636 FRILEEGMAARP 647
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKG----SKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEA 63
G+K+GKG++ Y K K P L+ ++ Q + E++ R + +NEA
Sbjct: 591 GQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEA 650
Query: 64 VLCLEETILNSP 75
LEE + P
Sbjct: 651 FRILEEGMAARP 662
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKG----SKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEA 63
G+K+GKG++ Y K K P L+ ++ Q + E++ R + +NEA
Sbjct: 591 GQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEA 650
Query: 64 VLCLEETILNSP 75
LEE + P
Sbjct: 651 FRILEEGMAARP 662
>pdb|2Y1I|A Chain A, Crystal Structure Of A S-Diastereomer Analogue Of The
Spore Photoproduct In Complex With Fragment Dna
Polymerase I From Bacillus Stearothermophilus
pdb|2Y1J|A Chain A, Crystal Structure Of A R-Diastereomer Analogue Of The
Spore Photoproduct In Complex With Fragment Dna
Polymerase I From Bacillus Stearothermophilus
Length = 580
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 26 PVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
P+ A I+KK + + LK+E LQ R++ + +E +L
Sbjct: 499 PIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELIL 538
>pdb|2XY7|A Chain A, Crystal Structure Of A Salicylic Aldehyde Base In The
Pre-Insertion Site Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus
Length = 580
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 26 PVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
P+ A I+KK + + LK+E LQ R++ + +E +L
Sbjct: 499 PIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELIL 538
>pdb|2XY5|A Chain A, Crystal Structure Of An Artificial Salen-Copper Basepair
In Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 581
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 26 PVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
P+ A I+KK + + LK+E LQ R++ + +E +L
Sbjct: 500 PIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELIL 539
>pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
In Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 580
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 26 PVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
P+ A I+KK + + LK+E LQ R++ + +E +L
Sbjct: 499 PIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELIL 538
>pdb|2XY6|A Chain A, Crystal Structure Of A Salicylic Aldehyde Basepair In
Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 581
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 26 PVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
P+ A I+KK + + LK+E LQ R++ + +E +L
Sbjct: 500 PIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELIL 539
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 LCLEETILNSPASPVYDHHLDGN 87
LCL+ + LN P + + HHL GN
Sbjct: 394 LCLDVSKLNGPVTMLKCHHLKGN 416
>pdb|1Z41|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus
Subtilis
pdb|1Z41|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus
Subtilis
pdb|1Z42|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus
Subtilis Complexed With P-Hydroxybenzaldehyde
pdb|1Z42|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus
Subtilis Complexed With P-Hydroxybenzaldehyde
pdb|1Z44|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus
Subtilis Complexed With P-Nitrophenol
pdb|1Z44|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus
Subtilis Complexed With P-Nitrophenol
pdb|1Z48|A Chain A, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
pdb|1Z48|B Chain B, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
Length = 338
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 67 LEETILNSPASPVYDHHLDGNLEPGHSRHVTS 98
L+ I+ SP H DG L P H H S
Sbjct: 16 LKNRIVXSPXCXYSSHEKDGKLTPFHXAHYIS 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,340,039
Number of Sequences: 62578
Number of extensions: 114632
Number of successful extensions: 349
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 29
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)