BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9061
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens
GN=HADHA PE=1 SV=2
Length = 763
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
GRKSGKG+++Y +G K + +N +IL L P+S + DED+Q R+V+RFVNEAV+C
Sbjct: 629 GRKSGKGFYIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMC 688
Query: 67 LEETILNSPA 76
L+E IL +PA
Sbjct: 689 LQEGILATPA 698
>sp|Q29554|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa
GN=HADHA PE=1 SV=1
Length = 763
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
GRKSGKG++VY +G K R VN +IL + + + DED+Q R+V+RFVNEAVLC
Sbjct: 629 GRKSGKGFYVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLC 688
Query: 67 LEETILNSPA 76
L+E IL +PA
Sbjct: 689 LQEGILATPA 698
>sp|Q8BMS1|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus
GN=Hadha PE=1 SV=1
Length = 763
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
GRKSGKG+++Y +GSK + +N IL L + + DED+Q R+++RFVNEAVLC
Sbjct: 629 GRKSGKGFYIYQEGSKNKSLNSEMDNILANLRLPAKPEVSSDEDVQYRVITRFVNEAVLC 688
Query: 67 LEETILNSPA 76
L+E IL +PA
Sbjct: 689 LQEGILATPA 698
>sp|Q64428|ECHA_RAT Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus
norvegicus GN=Hadha PE=1 SV=2
Length = 763
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
GRKSGKG+++Y GSK + +N IL L + + DED+Q R+++RFVNEAVLC
Sbjct: 629 GRKSGKGFYIYQSGSKNKNLNSEIDNILVNLRLPAKPEVSSDEDIQYRVITRFVNEAVLC 688
Query: 67 LEETILNSP 75
L+E IL +P
Sbjct: 689 LQEGILATP 697
>sp|A7MQP0|FADB_CROS8 Fatty acid oxidation complex subunit alpha OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=fadB PE=3 SV=1
Length = 729
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARP--VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+GKG++ Y + SK +P V D A+ L QP+ A DE++ RM+ VNE V
Sbjct: 582 GQKNGKGFYAYQEDSKGKPRKVPDDAVDSLLAEVSQPKRAFSDEEIVARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|Q9KT58|FADJ_VIBCH Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=fadJ PE=3 SV=2
Length = 708
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
GRKSGKG++ Y KGSK + V+ +LK L P+S L D+++ +R + +NEAV CL
Sbjct: 580 GRKSGKGFYTY-KGSKKKEVDKSVYKLLK---LTPESKLNDKEIAMRCLLPMLNEAVRCL 635
Query: 68 EETILNS 74
+E I+ S
Sbjct: 636 DEGIIRS 642
>sp|A5F2P2|FADJ_VIBC3 Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=fadJ PE=3 SV=1
Length = 708
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
GRKSGKG++ Y KGSK + V+ +LK L P+S L D+++ +R + +NEAV CL
Sbjct: 580 GRKSGKGFYTY-KGSKKKEVDKSVYKLLK---LTPESKLNDKEIAMRCLLPMLNEAVRCL 635
Query: 68 EETILNS 74
+E I+ S
Sbjct: 636 DEGIIRS 642
>sp|Q7MIS5|FADJ_VIBVY Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain YJ016) GN=fadJ PE=3 SV=1
Length = 705
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
GRKSGKG++ Y KG K + V+ +LK L P+S L D D+ LR V +NEAV CL
Sbjct: 577 GRKSGKGFYTY-KGKK-KEVDKSVYKLLK---LTPESKLSDNDIALRCVLPMLNEAVRCL 631
Query: 68 EETILNSP 75
++ I+ SP
Sbjct: 632 DDGIIRSP 639
>sp|Q87MM3|FADJ_VIBPA Fatty acid oxidation complex subunit alpha OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=fadJ PE=3 SV=1
Length = 703
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
GRKSGKG++ Y KG K + V+ +LK L P+S L D D+ LR V +NEAV CL
Sbjct: 577 GRKSGKGFYTY-KGKK-KEVDKSIYKLLK---LTPESKLSDNDIALRCVLPMLNEAVRCL 631
Query: 68 EETILNSP 75
++ I+ SP
Sbjct: 632 DDGIIRSP 639
>sp|Q8DB47|FADJ_VIBVU Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain CMCP6) GN=fadJ PE=3 SV=1
Length = 705
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
GRKSGKG++ Y KG K + V+ +LK L P+S L D D+ LR V +NEAV CL
Sbjct: 577 GRKSGKGFYTY-KGKK-KEVDKSVYKLLK---LTPESKLSDNDIALRCVLPMLNEAVRCL 631
Query: 68 EETILNSP 75
++ I+ SP
Sbjct: 632 DDGIIRSP 639
>sp|A7MS61|FADJ_VIBHB Fatty acid oxidation complex subunit alpha OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=fadJ PE=3 SV=1
Length = 704
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
GRK+GKG++ Y KG K + V+ ++ K +L P+S L D D+ LR V +NEAV CL
Sbjct: 577 GRKTGKGFYTY-KGKK-KEVDK---SVYKLLNLTPESKLSDNDIALRCVLPMLNEAVRCL 631
Query: 68 EETILNSP 75
++ I+ SP
Sbjct: 632 DDGIIRSP 639
>sp|A8G8D1|FADB_SERP5 Fatty acid oxidation complex subunit alpha OS=Serratia
proteamaculans (strain 568) GN=fadB PE=3 SV=1
Length = 729
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+ G++ Y++ +K +P ND +L QP+ + DE++ RM+ +NE V
Sbjct: 582 GQKNQLGFYRYSQDNKGKPRKDNDEQTDVLLAEVSQPRQTISDEEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEENIIASPA 652
>sp|Q6DAP5|FADB_ERWCT Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=fadB PE=3 SV=1
Length = 729
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVY---AKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+G+G++ Y +KG + + +D A+LK S QP+ A E++ RM+ +NE
Sbjct: 582 GQKNGQGFYRYQTDSKGKQRKEQDDAVDALLKNIS-QPKKAFSAEEIIARMMIPMINEVA 640
Query: 65 LCLEETILNSPA 76
CLEE I+ SPA
Sbjct: 641 RCLEEGIVASPA 652
>sp|A8ACZ4|FADB_CITK8 Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadB
PE=3 SV=1
Length = 729
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ DE++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDSLLAEVSQPKRDFSDEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|A1JIG4|FADB_YERE8 Fatty acid oxidation complex subunit alpha OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=fadB PE=3 SV=1
Length = 729
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARP--VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G+G++ Y + +K +P ND + L QP D+D+ R + +NE V
Sbjct: 582 GQKNGQGFYRYTQDTKGKPRKENDEQVDALLAQVSQPLQKFSDDDIIARTMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|B5XYH0|FADB_KLEP3 Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae
(strain 342) GN=fadB PE=3 SV=1
Length = 729
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ DE++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDSLLADVSQPKRDFSDEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|A4WFX4|FADB_ENT38 Fatty acid oxidation complex subunit alpha OS=Enterobacter sp.
(strain 638) GN=fadB PE=3 SV=1
Length = 729
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P +D A+ L QP DE++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEDDTAVESLLADVSQPTRDFSDEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|A6TGM4|FADB_KLEP7 Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=fadB PE=3 SV=1
Length = 729
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y SK +P D A+ L QP+ DE++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKDDSKGKPKKEEDAAVDSLLADVSQPKRDFSDEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|B0TL21|FADJ_SHEHH Fatty acid oxidation complex subunit alpha OS=Shewanella
halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1
Length = 708
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
GRK+GKG+++Y KA+ V+ ++L L+P + ++ R V + +NEAV CL
Sbjct: 579 GRKNGKGFYLYGGKKKAKEVDQTVYSVL---GLKPGVDTEATEVAQRCVVQMLNEAVRCL 635
Query: 68 EETILNSP 75
EE+I+ P
Sbjct: 636 EESIIACP 643
>sp|Q9F0Y7|FADB_ENTCL Fatty acid oxidation complex subunit alpha OS=Enterobacter cloacae
GN=fadB PE=3 SV=1
Length = 729
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 8 GRKSGKGYFVYAKGSKARP------VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVN 61
G+K+G G++ Y + SK +P V DG LA + QP+ D+++ RM+ +N
Sbjct: 582 GQKNGLGFWRYKENSKGKPKKEEDAVVDGLLADVS----QPKRDFTDDEIIARMMIPMIN 637
Query: 62 EAVLCLEETILNSPA 76
E V CLEE I+ SPA
Sbjct: 638 EVVRCLEEGIIASPA 652
>sp|A9MYB0|FADB_SALPB Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|Q57HM6|FADB_SALCH Fatty acid oxidation complex subunit alpha OS=Salmonella
choleraesuis (strain SC-B67) GN=fadB PE=3 SV=2
Length = 729
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|A0KEL1|FADB_AERHH Fatty acid oxidation complex subunit alpha OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadB
PE=3 SV=1
Length = 715
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARP--VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+GKG++ Y + K +P V D A L +P+ + + RM+ +NE VL
Sbjct: 583 GQKNGKGFYAYEQDKKGKPKKVADAASYELLAPIAKPKQDFDKDAIIARMMIPMINEVVL 642
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 643 CLEEGIVATPA 653
>sp|Q9L6L5|FADB_SALTY Fatty acid oxidation complex subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|B5EZW0|FADB_SALA4 Fatty acid oxidation complex subunit alpha OS=Salmonella agona
(strain SL483) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|B4TNZ1|FADB_SALSV Fatty acid oxidation complex subunit alpha OS=Salmonella
schwarzengrund (strain CVM19633) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|B5BIZ0|FADB_SALPK Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi
A (strain AKU_12601) GN=fadB PE=3 SV=1
Length = 725
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|Q5PKQ2|FADB_SALPA Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi
A (strain ATCC 9150 / SARB42) GN=fadB PE=3 SV=1
Length = 725
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|B4SZ85|FADB_SALNS Fatty acid oxidation complex subunit alpha OS=Salmonella newport
(strain SL254) GN=fadB PE=3 SV=1
Length = 729
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ D+++ RM+ +NE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKHDFSDDEIIARMMIPMINEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652
>sp|A5WH99|FADB_PSYWF Fatty acid oxidation complex subunit alpha OS=Psychrobacter sp.
(strain PRwf-1) GN=fadB PE=3 SV=1
Length = 719
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 8 GRKSGKGYFVYAKGSKARP---VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+G G++ Y K S+ +P +D A+LK + D+ + RM+ F NE V
Sbjct: 583 GQKNGVGFYKYEKDSRGKPKKTADDATYALLKDTTDTDNQQFDDQTIIDRMMLAFCNETV 642
Query: 65 LCLEETILNSPA 76
CLE+ I+ +P+
Sbjct: 643 RCLEDNIVATPS 654
>sp|B2TVJ5|FADB_SHIB3 Fatty acid oxidation complex subunit alpha OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=fadB PE=3
SV=1
Length = 729
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B1IW61|FADB_ECOLC Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B7M649|FADB_ECO8A Fatty acid oxidation complex subunit alpha OS=Escherichia coli O8
(strain IAI1) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B7L9A7|FADB_ECO55 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain 55989 / EAEC) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|Q83PG1|FADB_SHIFL Fatty acid oxidation complex subunit alpha OS=Shigella flexneri
GN=fadB PE=3 SV=4
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|Q0SZ36|FADB_SHIF8 Fatty acid oxidation complex subunit alpha OS=Shigella flexneri
serotype 5b (strain 8401) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B6I4I6|FADB_ECOSE Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain SE11) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|A8A6V1|FADB_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O9:H4 (strain HS) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|Q3YVC1|FADB_SHISS Fatty acid oxidation complex subunit alpha OS=Shigella sonnei
(strain Ss046) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|P21177|FADB_ECOLI Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12) GN=fadB PE=1 SV=2
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B1XAK8|FADB_ECODH Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12 / DH10B) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|C5A020|FADB_ECOBW Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=fadB PE=3 SV=1
Length = 729
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B7LTY9|FADB_ESCF3 Fatty acid oxidation complex subunit alpha OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=fadB PE=3 SV=1
Length = 729
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B7NFE7|FADB_ECOLU Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=fadB PE=3 SV=1
Length = 729
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|B7UNH4|FADB_ECO27 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=fadB PE=3 SV=1
Length = 729
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D A+ L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE I+ +PA
Sbjct: 642 CLEEGIIATPA 652
>sp|Q1R466|FADB_ECOUT Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain UTI89 / UPEC) GN=fadB PE=3 SV=2
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAI---LKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+G G++ Y + SK +P + + + L K S QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDVVVDDLLAKVS-QPKRDFSEEEIIARMMIPMVNEVV 640
Query: 65 LCLEETILNSPA 76
CLEE I+ +PA
Sbjct: 641 RCLEEGIIATPA 652
>sp|B7MHD1|FADB_ECO45 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAI---LKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+G G++ Y + SK +P + + + L K S QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDVVVDDLLAKVS-QPKRDFSEEEIIARMMIPMVNEVV 640
Query: 65 LCLEETILNSPA 76
CLEE I+ +PA
Sbjct: 641 RCLEEGIIATPA 652
>sp|A7ZU51|FADB_ECO24 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 8 GRKSGKGYFVYAKGSKARPV--NDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
G+K+G G++ Y + SK +P D + L QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDAVVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVR 641
Query: 66 CLEETILNSPA 76
CLEE+I+ +PA
Sbjct: 642 CLEESIIATPA 652
>sp|B7N2F2|FADB_ECO81 Fatty acid oxidation complex subunit alpha OS=Escherichia coli O81
(strain ED1a) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAI---LKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+G G++ Y + SK +P + + + L K S QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDVVVDDLLAKVS-QPKRDFSEEEIIARMMIPMVNEVV 640
Query: 65 LCLEETILNSPA 76
CLEE I+ +PA
Sbjct: 641 RCLEEGIIATPA 652
>sp|Q0TAL0|FADB_ECOL5 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 8 GRKSGKGYFVYAKGSKARPVNDGALAI---LKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
G+K+G G++ Y + SK +P + + + L K S QP+ +E++ RM+ VNE V
Sbjct: 582 GQKNGLGFWRYKEDSKGKPKKEEDVVVDDLLAKVS-QPKRDFSEEEIIARMMIPMVNEVV 640
Query: 65 LCLEETILNSPA 76
CLEE I+ +PA
Sbjct: 641 RCLEEGIIATPA 652
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,865,566
Number of Sequences: 539616
Number of extensions: 1429177
Number of successful extensions: 3590
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 3315
Number of HSP's gapped (non-prelim): 216
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)