Query psy9061
Match_columns 99
No_of_seqs 123 out of 1235
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:55:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 99.9 9.2E-24 2E-28 175.3 9.3 93 4-96 599-696 (737)
2 TIGR02437 FadB fatty oxidation 99.9 6.2E-23 1.4E-27 169.9 9.2 92 4-96 578-675 (714)
3 TIGR02440 FadJ fatty oxidation 99.9 3.8E-22 8.3E-27 164.8 8.9 90 4-96 567-659 (699)
4 PRK11154 fadJ multifunctional 99.9 4.6E-22 9.9E-27 164.5 8.7 90 4-96 572-666 (708)
5 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 1.1E-21 2.4E-26 157.2 7.9 47 49-96 415-461 (503)
6 PRK11730 fadB multifunctional 99.9 2.1E-21 4.5E-26 160.8 9.2 92 4-96 578-675 (715)
7 PRK08268 3-hydroxy-acyl-CoA de 99.8 1.8E-21 3.8E-26 156.1 5.9 49 47-96 414-462 (507)
8 KOG1683|consensus 99.8 9.4E-20 2E-24 141.1 4.5 94 4-97 248-345 (380)
9 PF00725 3HCDH: 3-hydroxyacyl- 99.5 8.2E-15 1.8E-19 93.7 2.8 46 50-96 2-47 (97)
10 KOG2304|consensus 99.4 2.8E-13 6.1E-18 100.7 3.7 50 46-96 197-246 (298)
11 PRK05808 3-hydroxybutyryl-CoA 99.3 8E-13 1.7E-17 98.3 3.9 50 46-96 183-232 (282)
12 PRK09260 3-hydroxybutyryl-CoA 99.3 3.7E-12 8E-17 95.1 4.4 48 48-96 184-231 (288)
13 PRK07819 3-hydroxybutyryl-CoA 99.3 4.4E-12 9.5E-17 95.4 4.3 48 48-96 189-236 (286)
14 PRK08293 3-hydroxybutyryl-CoA 99.2 8.5E-12 1.9E-16 93.2 4.2 49 47-96 187-235 (287)
15 COG1250 FadB 3-hydroxyacyl-CoA 99.2 6.1E-12 1.3E-16 96.2 3.2 49 47-96 184-232 (307)
16 PLN02545 3-hydroxybutyryl-CoA 99.2 1.9E-11 4E-16 91.5 4.2 49 47-96 185-233 (295)
17 PRK06035 3-hydroxyacyl-CoA deh 99.1 3.2E-11 6.9E-16 90.2 3.5 49 47-96 187-235 (291)
18 PRK07530 3-hydroxybutyryl-CoA 99.1 4.4E-11 9.5E-16 89.4 4.1 48 48-96 186-233 (292)
19 PRK07066 3-hydroxybutyryl-CoA 99.1 1E-10 2.2E-15 89.8 4.2 49 47-96 186-237 (321)
20 PRK11730 fadB multifunctional 98.8 2.1E-09 4.6E-14 89.6 3.9 48 47-96 494-541 (715)
21 TIGR02437 FadB fatty oxidation 98.8 2.3E-09 4.9E-14 89.5 4.0 48 47-96 494-541 (714)
22 PRK11154 fadJ multifunctional 98.8 3E-09 6.6E-14 88.6 4.3 47 47-96 491-537 (708)
23 TIGR02440 FadJ fatty oxidation 98.8 3.5E-09 7.6E-14 88.1 4.0 47 47-96 486-532 (699)
24 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.8 6.4E-09 1.4E-13 83.9 4.1 48 48-96 187-234 (503)
25 TIGR02441 fa_ox_alpha_mit fatt 98.7 8.3E-09 1.8E-13 86.5 3.8 47 47-96 516-562 (737)
26 PRK08268 3-hydroxy-acyl-CoA de 98.6 3.6E-08 7.9E-13 79.6 4.3 47 48-95 189-235 (507)
27 PRK06130 3-hydroxybutyryl-CoA 98.5 1.2E-07 2.7E-12 71.1 4.3 48 48-96 183-233 (311)
28 PRK08269 3-hydroxybutyryl-CoA 98.5 9.9E-08 2.1E-12 72.9 3.5 47 49-96 183-232 (314)
29 PRK06129 3-hydroxyacyl-CoA deh 98.3 7.9E-07 1.7E-11 67.1 4.5 47 48-95 186-235 (308)
30 PRK07531 bifunctional 3-hydrox 98.0 5.6E-06 1.2E-10 66.6 4.0 50 46-96 182-234 (495)
31 COG1250 FadB 3-hydroxyacyl-CoA 97.8 7.4E-06 1.6E-10 62.9 1.2 17 4-20 269-285 (307)
32 PRK08269 3-hydroxybutyryl-CoA 97.3 9.8E-05 2.1E-09 56.5 1.7 18 3-20 267-284 (314)
33 PRK06130 3-hydroxybutyryl-CoA 96.7 0.00059 1.3E-08 51.2 1.2 19 3-21 267-285 (311)
34 KOG2305|consensus 96.6 0.0013 2.8E-08 49.7 2.2 47 49-96 189-238 (313)
35 KOG1683|consensus 94.7 0.0084 1.8E-07 47.4 0.0 48 47-96 171-218 (380)
36 PF02493 MORN: MORN repeat; I 71.9 2.4 5.3E-05 19.6 1.1 15 7-21 7-21 (23)
37 PF09003 Phage_integ_N: Bacter 46.7 9 0.00019 23.8 0.6 14 7-20 20-33 (75)
38 KOG1785|consensus 46.7 20 0.00044 29.3 2.8 55 12-70 324-378 (563)
39 TIGR01505 tartro_sem_red 2-hyd 38.0 59 0.0013 24.0 4.0 37 50-87 169-209 (291)
40 KOG0429|consensus 37.0 74 0.0016 24.0 4.3 52 14-75 130-181 (258)
41 cd00279 YlxR Ylxr homologs; gr 36.6 19 0.00042 22.3 1.0 15 6-20 32-46 (79)
42 smart00698 MORN Possible plasm 34.8 23 0.00049 17.2 0.9 14 7-20 9-22 (26)
43 PRK11559 garR tartronate semia 34.7 71 0.0015 23.5 4.0 36 51-87 173-212 (296)
44 PRK14624 hypothetical protein; 33.3 81 0.0017 21.0 3.6 42 47-93 66-107 (115)
45 PRK00587 hypothetical protein; 32.0 91 0.002 20.2 3.7 24 46-69 59-82 (99)
46 PRK03762 hypothetical protein; 31.5 86 0.0019 20.4 3.5 24 46-69 62-85 (103)
47 COG2740 Predicted nucleic-acid 30.3 26 0.00056 22.6 0.9 16 5-20 37-52 (95)
48 PRK14625 hypothetical protein; 30.0 1E+02 0.0022 20.3 3.7 23 47-69 62-84 (109)
49 PRK14628 hypothetical protein; 29.3 95 0.0021 20.7 3.5 40 46-89 76-115 (118)
50 COG0718 Uncharacterized protei 28.8 1.2E+02 0.0026 19.9 3.8 25 46-70 64-88 (105)
51 COG1458 Predicted DNA-binding 28.7 1.6E+02 0.0034 21.9 4.7 33 51-83 138-170 (221)
52 PF04296 DUF448: Protein of un 28.3 33 0.00072 20.9 1.1 15 6-20 31-45 (78)
53 smart00427 H2B Histone H2B. 28.2 1.5E+02 0.0033 18.9 4.1 35 51-86 31-68 (89)
54 PRK14629 hypothetical protein; 27.8 1.2E+02 0.0027 19.6 3.7 23 47-69 63-85 (99)
55 cd00585 Peptidase_C1B Peptidas 27.6 2.6E+02 0.0056 22.8 6.3 68 26-93 136-222 (437)
56 TIGR00501 met_pdase_II methion 27.5 1.5E+02 0.0033 22.3 4.7 46 49-99 107-155 (295)
57 PF04967 HTH_10: HTH DNA bindi 25.8 1.1E+02 0.0023 17.5 2.9 8 13-20 15-22 (53)
58 PHA01735 hypothetical protein 25.7 1.7E+02 0.0037 18.1 4.4 34 49-83 7-40 (76)
59 PF08745 UPF0278: UPF0278 fami 25.7 32 0.0007 25.3 0.8 34 50-83 130-163 (205)
60 KOG3316|consensus 25.5 1.4E+02 0.0031 21.2 3.9 41 51-91 6-49 (163)
61 PLN00053 photosystem II subuni 25.1 39 0.00085 22.6 1.0 14 7-20 45-59 (117)
62 PRK14627 hypothetical protein; 25.1 1.4E+02 0.0031 19.2 3.7 23 47-69 61-83 (100)
63 PRK00153 hypothetical protein; 25.1 1.2E+02 0.0027 19.3 3.4 24 47-70 63-86 (104)
64 PRK04358 hypothetical protein; 24.9 1.7E+02 0.0037 21.7 4.4 35 49-83 136-170 (217)
65 TIGR00103 DNA_YbaB_EbfC DNA-bi 23.4 88 0.0019 20.1 2.4 24 47-70 64-87 (102)
66 TIGR03875 RNA_lig_partner RNA 22.7 1.8E+02 0.0039 21.4 4.2 32 52-83 135-166 (206)
67 PRK14621 hypothetical protein; 22.3 1.6E+02 0.0034 19.4 3.5 24 46-69 61-84 (111)
68 PLN00158 histone H2B; Provisio 22.2 2E+02 0.0044 19.3 4.0 35 51-86 57-94 (116)
69 PRK14623 hypothetical protein; 21.7 1.7E+02 0.0036 19.2 3.5 25 46-70 58-82 (106)
70 PRK09354 recA recombinase A; P 21.4 1.3E+02 0.0028 23.7 3.4 26 9-36 286-311 (349)
71 TIGR02727 MTHFS_bact 5,10-meth 20.7 25 0.00054 24.4 -0.6 11 6-18 132-142 (181)
72 PRK10333 5-formyltetrahydrofol 20.6 25 0.00055 24.6 -0.6 12 5-18 125-136 (182)
73 PRK14622 hypothetical protein; 20.5 2E+02 0.0042 18.6 3.6 39 47-89 61-99 (103)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.90 E-value=9.2e-24 Score=175.31 Aligned_cols=93 Identities=48% Similarity=0.716 Sum_probs=79.5
Q ss_pred CCCCccccCceeEeccCCCC-CCCCCHHHHHHHHhhccCCcc-ccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHH
Q psy9061 4 WCPPGRKSGKGYFVYAKGSK-ARPVNDGALAILKKYSLQPQS-ALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYD 81 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~ 81 (99)
+|++|+|||+|||+|+++++ ++.+++++..++......+.. ..+.++|+|||+++|+|||++||+|||+.+|+|||.+
T Consensus 599 ~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a 678 (737)
T TIGR02441 599 AGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIG 678 (737)
T ss_pred CCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHH
Confidence 69999999999999987653 567999998888654323321 3578999999999999999999999998899999999
Q ss_pred HHhhcCCCC---cccccc
Q psy9061 82 HHLDGNLEP---GHSRHV 96 (99)
Q Consensus 82 ~~~g~G~p~---gp~~~~ 96 (99)
|++|+|||+ |||+..
T Consensus 679 ~~~G~GfP~~~gGP~~~a 696 (737)
T TIGR02441 679 AVFGLGFPPFLGGPFRFV 696 (737)
T ss_pred HHhCCCCCCccCCHHHHH
Confidence 999999997 999864
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.88 E-value=6.2e-23 Score=169.86 Aligned_cols=92 Identities=29% Similarity=0.474 Sum_probs=77.9
Q ss_pred CCCCccccCceeEeccCC---CCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061 4 WCPPGRKSGKGYFVYAKG---SKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY 80 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~ 80 (99)
+|++|+|||+|||+|+++ +.++..|+++..++...+.. ...++.++|+|||+.+|+|||++||+|||+.+++|||.
T Consensus 578 ~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~ 656 (714)
T TIGR02437 578 AKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVYE-QRDFDDEEIIARMMIPMINETVRCLEEGIVATAAEADM 656 (714)
T ss_pred CCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhcc-cCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence 699999999999999643 12356899998887654322 23578899999999999999999999998889999999
Q ss_pred HHHhhcCCCC---cccccc
Q psy9061 81 DHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 81 ~~~~g~G~p~---gp~~~~ 96 (99)
++++|+|||+ |||+..
T Consensus 657 ~~~~G~Gfp~~~gGP~~~~ 675 (714)
T TIGR02437 657 GLVYGLGFPPFRGGAFRYL 675 (714)
T ss_pred HHHhCCCCCCccCCHHHHH
Confidence 9999999998 999864
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.87 E-value=3.8e-22 Score=164.79 Aligned_cols=90 Identities=28% Similarity=0.478 Sum_probs=78.0
Q ss_pred CCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q psy9061 4 WCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHH 83 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~ 83 (99)
+|++|+|||+|||+|+.+++++..|+.+..++.. .+....+.++|+|||+.+++|||++|++|||+.+|+|||.+++
T Consensus 567 ~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~ 643 (699)
T TIGR02440 567 DDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI---KPGVDKEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAI 643 (699)
T ss_pred CCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHH
Confidence 6999999999999998655556789998887632 2233578999999999999999999999999779999999999
Q ss_pred hhcCCCC---cccccc
Q psy9061 84 LDGNLEP---GHSRHV 96 (99)
Q Consensus 84 ~g~G~p~---gp~~~~ 96 (99)
+|+|||+ |||+..
T Consensus 644 ~g~G~p~~~~Gpf~~~ 659 (699)
T TIGR02440 644 FGIGFPPFLGGPFRYI 659 (699)
T ss_pred hcCCCCCCcCCHHHHH
Confidence 9999997 999864
No 4
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.87 E-value=4.6e-22 Score=164.47 Aligned_cols=90 Identities=30% Similarity=0.496 Sum_probs=77.0
Q ss_pred CCCCccccCceeEeccCCCC--CCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHH
Q psy9061 4 WCPPGRKSGKGYFVYAKGSK--ARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYD 81 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~ 81 (99)
.|++|+|||+|||+|+++++ ++..++++..++.. .+...++.++|+|||+.+|+|||++|++|||+.+++|||.+
T Consensus 572 ~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~ 648 (708)
T PRK11154 572 DDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI---TPQSRLSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIG 648 (708)
T ss_pred CCCCcccCCceEEECCCCcccccccCCHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHH
Confidence 69999999999999985433 35688888777642 23345899999999999999999999999997799999999
Q ss_pred HHhhcCCCC---cccccc
Q psy9061 82 HHLDGNLEP---GHSRHV 96 (99)
Q Consensus 82 ~~~g~G~p~---gp~~~~ 96 (99)
|++|+|||+ |||+..
T Consensus 649 ~~~G~G~p~~~gGp~~~~ 666 (708)
T PRK11154 649 AVFGIGFPPFLGGPFRYM 666 (708)
T ss_pred HHhcCCCCCccCCHHHHH
Confidence 999999998 999864
No 5
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.85 E-value=1.1e-21 Score=157.24 Aligned_cols=47 Identities=23% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
.+|+|||+.+++|||+++++|||+ +++|||.+|++|+|||+|||...
T Consensus 415 Gfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~GP~~~~ 461 (503)
T TIGR02279 415 GLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPYGPLAWA 461 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCcCHHHHH
Confidence 799999999999999999999999 99999999999999999999753
No 6
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.85 E-value=2.1e-21 Score=160.78 Aligned_cols=92 Identities=29% Similarity=0.464 Sum_probs=76.9
Q ss_pred CCCCccccCceeEeccCCC--C-CCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061 4 WCPPGRKSGKGYFVYAKGS--K-ARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY 80 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~ 80 (99)
+|++|+|||+|||+|+++. + ++..|+.+.+++...+.. ...+++++|+|||+.+++|||++|++|||+.+|+|||.
T Consensus 578 ~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~ 656 (715)
T PRK11730 578 AKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQP-KREFSDEEIIARMMIPMINEVVRCLEEGIVASPAEADM 656 (715)
T ss_pred CCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhccc-cCCCCHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 6999999999999997432 1 345788888887654322 23478899999999999999999999998669999999
Q ss_pred HHHhhcCCCC---cccccc
Q psy9061 81 DHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 81 ~~~~g~G~p~---gp~~~~ 96 (99)
++++|+|||+ |||+..
T Consensus 657 a~~~g~G~p~~~gGPf~~~ 675 (715)
T PRK11730 657 ALVYGLGFPPFRGGAFRYL 675 (715)
T ss_pred HHHhCCCCCCCcCCHHHHH
Confidence 9999999997 999864
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.84 E-value=1.8e-21 Score=156.13 Aligned_cols=49 Identities=27% Similarity=0.136 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
+..+|+||++.+++|||++|++|||+ |++|||.+|++|+|||+|||+..
T Consensus 414 ~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~GP~~~~ 462 (507)
T PRK08268 414 SPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPLGPLAWG 462 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHHH
Confidence 56789999999999999999999998 99999999999999999999754
No 8
>KOG1683|consensus
Probab=99.78 E-value=9.4e-20 Score=141.10 Aligned_cols=94 Identities=34% Similarity=0.491 Sum_probs=78.0
Q ss_pred CCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhccCCc-cccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHH
Q psy9061 4 WCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQ-SALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDH 82 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~ 82 (99)
.|+.|+|||+|||.|+++.++..-.+++.+.+++....+. +..+++++++|+++++||||++|++||++.+++++|++.
T Consensus 248 ~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~~r~~~~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~ 327 (380)
T KOG1683|consen 248 KGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPNPRVADDEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIAS 327 (380)
T ss_pred HHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCCcccCCHHHHHHHHhhHHHHHHHHHHHHHHhcCccccceee
Confidence 4789999999999999864332222677777766552222 457999999999999999999999999999999999999
Q ss_pred HhhcCCCC---ccccccc
Q psy9061 83 HLDGNLEP---GHSRHVT 97 (99)
Q Consensus 83 ~~g~G~p~---gp~~~~~ 97 (99)
++|+|||+ ||+|-|.
T Consensus 328 v~G~gfp~~~GGp~~~~d 345 (380)
T KOG1683|consen 328 VFGLGFPPFRGGPMRFVD 345 (380)
T ss_pred eeccCCCCcCCCceeeee
Confidence 99999997 9999764
No 9
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.51 E-value=8.2e-15 Score=93.67 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 50 DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 50 ~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
+|+||++.+++|||+++++||++ ||+|||.+++.++|||+|||+..
T Consensus 2 Fi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~Gpf~l~ 47 (97)
T PF00725_consen 2 FIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPMGPFELA 47 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSSTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCCccchHH
Confidence 57999999999999999999999 89999999999999999999864
No 10
>KOG2304|consensus
Probab=99.38 E-value=2.8e-13 Score=100.72 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
-+..+|+||||.++++||+++++.|.+ |-+|||.+|++|.|||||||+..
T Consensus 197 DtpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPMGPfEL~ 246 (298)
T KOG2304|consen 197 DTPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPMGPFELA 246 (298)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCCChHHHH
Confidence 356799999999999999999999999 89999999999999999999863
No 11
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.34 E-value=8e-13 Score=98.31 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
-...+|.||++.+++|||++|+++||+ +|+|||.++++|+|||+|||+..
T Consensus 183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~Gp~~~~ 232 (282)
T PRK05808 183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPIGPLALA 232 (282)
T ss_pred CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence 356799999999999999999999998 89999999999999999999864
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.28 E-value=3.7e-12 Score=95.10 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
..+|+|||+.+++|||++|+++||+ +++|||.++++|+|||+|||+..
T Consensus 184 ~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~Gp~~~~ 231 (288)
T PRK09260 184 PGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPMGPLELG 231 (288)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence 5789999999999999999999998 99999999999999999999764
No 13
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.26 E-value=4.4e-12 Score=95.36 Aligned_cols=48 Identities=10% Similarity=-0.007 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
..+|.|||+.+++|||++|++||++ |++|||.++++|+|||+|||+..
T Consensus 189 pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~Gpf~~~ 236 (286)
T PRK07819 189 SGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPMGPLRLS 236 (286)
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence 5689999999999999999999997 89999999999999999999864
No 14
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.23 E-value=8.5e-12 Score=93.20 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+||++.+++|||++++++|++ ||+|||.+++.++|||+|||+..
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~Gp~~~~ 235 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPMGPFGIL 235 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCcCHHHHH
Confidence 45799999999999999999999999 99999999999999999999864
No 15
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.22 E-value=6.1e-12 Score=96.21 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+||++.+++|||++++++|++ +|++||.+|..++|||||||+..
T Consensus 184 ~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pmGpf~l~ 232 (307)
T COG1250 184 VPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPMGPFELA 232 (307)
T ss_pred CCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCccHHHHH
Confidence 46799999999999999999999999 99999999999999999999864
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.18 E-value=1.9e-11 Score=91.48 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|.||++.+++|||++|+++|++ +++|||.++++|+|||+|||+..
T Consensus 185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~Gp~~~~ 233 (295)
T PLN02545 185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPMGPLHLA 233 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCCCHHHHH
Confidence 35789999999999999999999998 89999999999999999999864
No 17
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.13 E-value=3.2e-11 Score=90.19 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...++.||++.+++|||+++++||++ |++|||.++..++|||+|||+..
T Consensus 187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~Gp~~~~ 235 (291)
T PRK06035 187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPMGPFELM 235 (291)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCccCHHHHH
Confidence 35689999999999999999999999 99999999999999999999864
No 18
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.13 E-value=4.4e-11 Score=89.36 Aligned_cols=48 Identities=21% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
..+|.||++.+++|||++++++|++ +++|||.++.+|+|||+|||+..
T Consensus 186 pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~GP~~~~ 233 (292)
T PRK07530 186 PAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPMGPLELA 233 (292)
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence 3689999999999999999999998 99999999999999999999864
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.08 E-value=1e-10 Score=89.85 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~ 96 (99)
...+|.|||+.+++|||++++++|++ |++|||.+|.+|+|+| +|||++.
T Consensus 186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~ 237 (321)
T PRK07066 186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTY 237 (321)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHh
Confidence 46799999999999999999999999 9999999999999998 9999864
No 20
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.85 E-value=2.1e-09 Score=89.63 Aligned_cols=48 Identities=6% Similarity=-0.166 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+|||+.+++|||++++++| + +++|||.++..++|||+|||+..
T Consensus 494 ~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~GP~~~~ 541 (715)
T PRK11730 494 CPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPMGPAYLL 541 (715)
T ss_pred cCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCccCHHHHH
Confidence 467999999999999999999999 7 89999999999999999999864
No 21
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.84 E-value=2.3e-09 Score=89.51 Aligned_cols=48 Identities=6% Similarity=-0.163 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|.|||+.++++||++++++| + +|++||.++..++|||+|||++.
T Consensus 494 ~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~GPf~l~ 541 (714)
T TIGR02437 494 CPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPMGPAYLL 541 (714)
T ss_pred cccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCccCHHHHH
Confidence 467999999999999999999999 6 89999999999999999999864
No 22
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.83 E-value=3e-09 Score=88.58 Aligned_cols=47 Identities=15% Similarity=-0.012 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+|||+.+++|||++++++|+ +++|||.+++ ++|||+|||+..
T Consensus 491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~GPf~~~ 537 (708)
T PRK11154 491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPVGPITLL 537 (708)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCCCHHHHH
Confidence 3468999999999999999999996 6999999998 899999999864
No 23
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.81 E-value=3.5e-09 Score=88.14 Aligned_cols=47 Identities=17% Similarity=0.013 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+|||+.+++|||++++++| + +++|||.++. ++|||+|||+..
T Consensus 486 ~pGfi~nRl~~~~~~Ea~~l~~~G-~-~~~dID~a~~-~~G~p~GPf~l~ 532 (699)
T TIGR02440 486 KAGFYVNRILAPYMNEAARLLLEG-E-PVEHIDKALV-KFGFPVGPITLL 532 (699)
T ss_pred ccchHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHH-HcCCCcCHHHHH
Confidence 357999999999999999999999 4 8999999997 999999999864
No 24
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.77 E-value=6.4e-09 Score=83.90 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
..+|.||++.++++||+.++++|++ ++++||.++..++|||||||++.
T Consensus 187 pGfi~Nrl~~~~~~EA~~l~e~g~a-~~~~ID~al~~~~G~~mGPf~l~ 234 (503)
T TIGR02279 187 PGFIVNRVARPYYAEALRALEEQVA-APAVLDAALRDGAGFPMGPFELT 234 (503)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHHH
Confidence 4579999999999999999999999 99999999999999999999863
No 25
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.73 E-value=8.3e-09 Score=86.47 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+||++.+++|||+++++||+ +++|||.++ .++|||+|||+..
T Consensus 516 ~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~GP~~l~ 562 (737)
T TIGR02441 516 GPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPVGAATLA 562 (737)
T ss_pred cCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCCCHHHHH
Confidence 4578999999999999999999996 899999997 5999999999864
No 26
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.62 E-value=3.6e-08 Score=79.56 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRH 95 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~ 95 (99)
..+|.||++.++++||+.++++|++ ++++||.++..++|||||||+.
T Consensus 189 pGfi~Nrll~~~~~Ea~~l~~~g~~-~~~~iD~al~~~~G~~mGPf~l 235 (507)
T PRK08268 189 PGFIVNRAARPYYTEALRVLEEGVA-DPATIDAILREAAGFRMGPFEL 235 (507)
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHH
Confidence 4689999999999999999999999 9999999999999999999984
No 27
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=1.2e-07 Score=71.14 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~ 96 (99)
..++.||++.++++||..++++|++ ++++||.++..++||| +|||+..
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~ 233 (311)
T PRK06130 183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQR 233 (311)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHh
Confidence 3569999999999999999999999 9999999999999999 6999864
No 28
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.49 E-value=9.9e-08 Score=72.88 Aligned_cols=47 Identities=19% Similarity=0.084 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061 49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV 96 (99)
Q Consensus 49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~ 96 (99)
.+|+||++.++++||+.|+++|++ ++++||.++..++||| +|||+..
T Consensus 183 Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~ 232 (314)
T PRK08269 183 GYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFI 232 (314)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHH
Confidence 579999999999999999999998 9999999999999999 5999754
No 29
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.31 E-value=7.9e-07 Score=67.14 Aligned_cols=47 Identities=15% Similarity=-0.001 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Cccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRH 95 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~ 95 (99)
..+|.||++.++++||+.++++|++ |+++||.++..|+|++ +|||..
T Consensus 186 ~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~ 235 (308)
T PRK06129 186 DGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFET 235 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHH
Confidence 4579999999999999999999999 9999999999999998 899865
No 30
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.01 E-value=5.6e-06 Score=66.56 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=45.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV 96 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~ 96 (99)
....++.||++.++++||+.++++|++ |+++||.++..|+|++ +|||++.
T Consensus 182 ~~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~ 234 (495)
T PRK07531 182 EIDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETY 234 (495)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHH
Confidence 456789999999999999999999999 9999999999988875 8999764
No 31
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.80 E-value=7.4e-06 Score=62.93 Aligned_cols=17 Identities=47% Similarity=0.739 Sum_probs=15.8
Q ss_pred CCCCccccCceeEeccC
Q psy9061 4 WCPPGRKSGKGYFVYAK 20 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~ 20 (99)
+|++|+|||+|||+|++
T Consensus 269 ~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 269 AGRLGRKSGKGFYDYRG 285 (307)
T ss_pred cccccccCCCcceeccc
Confidence 69999999999999974
No 32
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.33 E-value=9.8e-05 Score=56.46 Aligned_cols=18 Identities=28% Similarity=0.483 Sum_probs=15.9
Q ss_pred CCCCCccccCceeEeccC
Q psy9061 3 FWCPPGRKSGKGYFVYAK 20 (99)
Q Consensus 3 ~~grlGrKtG~GfY~Y~~ 20 (99)
-+|++|+|||+|||+|++
T Consensus 267 ~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 267 EEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HCCCCcccCCCcceeCCC
Confidence 369999999999999964
No 33
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.74 E-value=0.00059 Score=51.23 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCCCCccccCceeEeccCC
Q psy9061 3 FWCPPGRKSGKGYFVYAKG 21 (99)
Q Consensus 3 ~~grlGrKtG~GfY~Y~~g 21 (99)
-.|++|+|+|+|||+|+++
T Consensus 267 ~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 267 EAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred HcCCccccCCCcCccCCCC
Confidence 3689999999999999754
No 34
>KOG2305|consensus
Probab=96.62 E-value=0.0013 Score=49.71 Aligned_cols=47 Identities=13% Similarity=-0.084 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061 49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV 96 (99)
Q Consensus 49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~ 96 (99)
.+.+||+.++++||..+++..|+. +..|+|..|-.|+|.+ -||++++
T Consensus 189 Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 189 GFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred cceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhh
Confidence 468899999999999999999999 7999999999999975 4888765
No 35
>KOG1683|consensus
Probab=94.75 E-value=0.0084 Score=47.38 Aligned_cols=48 Identities=10% Similarity=-0.182 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
.-++.++|++.++.+++.+++.|=++ +|..+|. ++--+|||+||++..
T Consensus 171 c~gf~v~r~l~~y~~~~~~~l~e~g~-~p~~iD~-~~t~fGf~~g~~~L~ 218 (380)
T KOG1683|consen 171 CCGFRVNRLLPPYTIGLNELLLEIGA-DPWLIDS-LITKFGFRVGERALA 218 (380)
T ss_pred CCceEEEecccHHHHHHHHHHHHcCC-CHHHHHH-HHHhcCccccHHHHh
Confidence 34678999999999999999999335 7999999 778899999998753
No 36
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=71.89 E-value=2.4 Score=19.60 Aligned_cols=15 Identities=33% Similarity=0.866 Sum_probs=12.1
Q ss_pred CccccCceeEeccCC
Q psy9061 7 PGRKSGKGYFVYAKG 21 (99)
Q Consensus 7 lGrKtG~GfY~Y~~g 21 (99)
-|++.|.|-|.|+++
T Consensus 7 ~g~~~G~G~~~~~~G 21 (23)
T PF02493_consen 7 NGKKHGYGVYTFPDG 21 (23)
T ss_dssp TTEEECEEEEE-TTS
T ss_pred ECcccccEEEEeCCC
Confidence 488999999999875
No 37
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=46.72 E-value=9 Score=23.82 Aligned_cols=14 Identities=36% Similarity=0.990 Sum_probs=6.3
Q ss_pred CccccCceeEeccC
Q psy9061 7 PGRKSGKGYFVYAK 20 (99)
Q Consensus 7 lGrKtG~GfY~Y~~ 20 (99)
..+++|+|||.|..
T Consensus 20 ~dkr~~k~Yy~Yr~ 33 (75)
T PF09003_consen 20 KDKRNGKGYYQYRN 33 (75)
T ss_dssp TT-----SEEEEE-
T ss_pred CCcCcceeEEEEec
Confidence 34678999999953
No 38
>KOG1785|consensus
Probab=46.66 E-value=20 Score=29.30 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=29.5
Q ss_pred CceeEeccCCCCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcC
Q psy9061 12 GKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEET 70 (99)
Q Consensus 12 G~GfY~Y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eG 70 (99)
..|||.|++|. ..|+++..+.+.... ..-..+.++..--|-..---|-|.+..|.
T Consensus 324 keGFYlyPdGr---~~npdLt~l~~~~p~-d~i~VtqEQyeLYceMgsTFeLCKICaen 378 (563)
T KOG1785|consen 324 KEGFYLYPDGR---DQNPDLTGLCQPPPQ-DRIKVTQEQYELYCEMGSTFELCKICAEN 378 (563)
T ss_pred ccceEECCCCc---cCCCChhhccCCCcc-cceeeeHHHHHHHHHccchHHHHHHhhcc
Confidence 35799999873 467777665432110 00124455544444444455666666554
No 39
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=38.01 E-value=59 Score=23.98 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHcCCCCCcchHHHHHHhhcC
Q psy9061 50 DLQLRMVSRF----VNEAVLCLEETILNSPASPVYDHHLDGN 87 (99)
Q Consensus 50 ~i~~Rll~~~----vnEA~~~l~eGv~~s~~diD~~~~~g~G 87 (99)
.+.++++... ++|+..+.+..-+ +++++..++..+.+
T Consensus 169 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi-d~~~~~~~l~~~~~ 209 (291)
T TIGR01505 169 KVANQIIVALNIEAVSEALVFASKAGV-DPVRVRQALRGGLA 209 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHhcCcc
Confidence 4788888876 9999999988778 89999988875554
No 40
>KOG0429|consensus
Probab=36.96 E-value=74 Score=23.98 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=28.0
Q ss_pred eeEeccCCCCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q psy9061 14 GYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSP 75 (99)
Q Consensus 14 GfY~Y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~ 75 (99)
=||+|+..- .+-.|+++..++.+ +.++...|+.-....--..+.++--..+|
T Consensus 130 iF~dpd~si-~kl~N~eAa~l~~k---------~r~ef~~rvqe~vk~sr~~iyD~ppteDP 181 (258)
T KOG0429|consen 130 IFYDPDVSI-DKLINPEAAVLYKK---------HRDEFRERVQECVKASRSMIYDEPPTEDP 181 (258)
T ss_pred HhcCcccch-hhhcChHHHHHHHH---------hHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 489987542 24569998888764 33444555544443333333444333333
No 41
>cd00279 YlxR Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Probab=36.59 E-value=19 Score=22.26 Aligned_cols=15 Identities=40% Similarity=0.886 Sum_probs=12.2
Q ss_pred CCccccCceeEeccC
Q psy9061 6 PPGRKSGKGYFVYAK 20 (99)
Q Consensus 6 rlGrKtG~GfY~Y~~ 20 (99)
..|++.|+|+|.-.+
T Consensus 32 ~~~k~~GRGaYvc~~ 46 (79)
T cd00279 32 PTGKLPGRGAYVCAD 46 (79)
T ss_pred CCCCCCCCeEEEcCC
Confidence 368889999999754
No 42
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=34.79 E-value=23 Score=17.16 Aligned_cols=14 Identities=36% Similarity=0.994 Sum_probs=11.9
Q ss_pred CccccCceeEeccC
Q psy9061 7 PGRKSGKGYFVYAK 20 (99)
Q Consensus 7 lGrKtG~GfY~Y~~ 20 (99)
-|++.|.|-|.|++
T Consensus 9 ~g~~hG~G~~~~~d 22 (26)
T smart00698 9 NGKRHGRGVYTYAN 22 (26)
T ss_pred CCeEEeeEEEEecc
Confidence 37899999999975
No 43
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=34.68 E-value=71 Score=23.51 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=27.1
Q ss_pred HHHHHHHH----HHHHHHHHHHcCCCCCcchHHHHHHhhcC
Q psy9061 51 LQLRMVSR----FVNEAVLCLEETILNSPASPVYDHHLDGN 87 (99)
Q Consensus 51 i~~Rll~~----~vnEA~~~l~eGv~~s~~diD~~~~~g~G 87 (99)
+.++++.. +++|+..+.+..-+ ++++++.++..+.+
T Consensus 173 l~~n~~~~~~~~~~~Ea~~l~~~~Gi-~~~~~~~~l~~~~~ 212 (296)
T PRK11559 173 LANQVIVALNIAAMSEALVLATKAGV-NPDLVYQAIRGGLA 212 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHhcCcc
Confidence 46665554 58999999987777 78999988875544
No 44
>PRK14624 hypothetical protein; Provisional
Probab=33.30 E-value=81 Score=21.00 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHS 93 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~ 93 (99)
++.+++..|+.+-+|+|..-+++- +.+.+-. +.-|+++| |.|
T Consensus 66 eD~E~LeDLI~aAvNdA~~k~~e~---~~e~m~~-~tgGm~lP-Gl~ 107 (115)
T PRK14624 66 DDNKMLEDLVMAATNDALKKAKEA---TAYEFQN-ASGGLDFS-EIS 107 (115)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HhCCCCCC-chH
Confidence 578899999999999999999883 2234433 34566666 643
No 45
>PRK00587 hypothetical protein; Provisional
Probab=31.97 E-value=91 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHc
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEE 69 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~e 69 (99)
.++.++++-++.+-+|+|..-+++
T Consensus 59 ~eD~E~LeDLI~aA~NdA~~k~~e 82 (99)
T PRK00587 59 PEDKETLQDMLREAINEAISITCK 82 (99)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998876
No 46
>PRK03762 hypothetical protein; Provisional
Probab=31.49 E-value=86 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHc
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEE 69 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~e 69 (99)
+++.+++.-++.+-+|+|..-+++
T Consensus 62 l~D~e~LeDLI~aAiNdA~~k~~~ 85 (103)
T PRK03762 62 LEDKESLQILLISAINDVYKMVEE 85 (103)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999887
No 47
>COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]
Probab=30.33 E-value=26 Score=22.55 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=13.0
Q ss_pred CCCccccCceeEeccC
Q psy9061 5 CPPGRKSGKGYFVYAK 20 (99)
Q Consensus 5 grlGrKtG~GfY~Y~~ 20 (99)
.-.|++.|+|+|.-.+
T Consensus 37 d~~~k~~GRGaYv~~~ 52 (95)
T COG2740 37 DPTGKLPGRGAYVCPD 52 (95)
T ss_pred ccccCCCCceEEEeCC
Confidence 4578999999999764
No 48
>PRK14625 hypothetical protein; Provisional
Probab=30.00 E-value=1e+02 Score=20.30 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEE 69 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~e 69 (99)
++.+++..|+.+-+|+|..-+++
T Consensus 62 eD~e~LeDLI~aA~NdA~~k~~~ 84 (109)
T PRK14625 62 GEGEVIADLIVAAHADAKKKLDA 84 (109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999988
No 49
>PRK14628 hypothetical protein; Provisional
Probab=29.30 E-value=95 Score=20.70 Aligned_cols=40 Identities=10% Similarity=-0.038 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE 89 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p 89 (99)
+++.|++.-++.+-+|+|..-+++- +.+.+-. +.-|+++|
T Consensus 76 l~D~E~LeDLIiaA~NdA~~ka~~~---~~~~m~~-~tggm~lP 115 (118)
T PRK14628 76 KEDFETLKDLLIAGMNEVMEKIEKR---REEEMSK-ITQQFGIP 115 (118)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HhCCCCCC
Confidence 4578899999999999999999883 2233332 33466666
No 50
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.75 E-value=1.2e+02 Score=19.94 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcC
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEET 70 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~eG 70 (99)
.++.|++.-++.+-+|+|..-+++-
T Consensus 64 peD~E~LeDLi~aA~ndA~~kv~e~ 88 (105)
T COG0718 64 PEDKEMLEDLILAAFNDAKKKVEET 88 (105)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999874
No 51
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=28.71 E-value=1.6e+02 Score=21.89 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q psy9061 51 LQLRMVSRFVNEAVLCLEETILNSPASPVYDHH 83 (99)
Q Consensus 51 i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~ 83 (99)
++-.++..+=+-=...+..|+..|..|+|..+.
T Consensus 138 ~igk~I~~lR~KYR~alR~GiLDSapDlDvLLL 170 (221)
T COG1458 138 VVGKIIRKLREKYREALRKGILDSAPDLDVLLL 170 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 334444444455566789999999999998654
No 52
>PF04296 DUF448: Protein of unknown function (DUF448); InterPro: IPR007393 This entry represents a group of uncharacterised proteins. Some member sequences retain zinc-binding residues. The structure of the hypothetical cytosolic protein SP0554 from Streptococcus pneumoniae revealed an alpha+beta fold that could have evolved from a glucocorticoid receptor-like zinc finger domain [].; PDB: 1G2R_A.
Probab=28.26 E-value=33 Score=20.89 Aligned_cols=15 Identities=33% Similarity=0.846 Sum_probs=9.0
Q ss_pred CCccccCceeEeccC
Q psy9061 6 PPGRKSGKGYFVYAK 20 (99)
Q Consensus 6 rlGrKtG~GfY~Y~~ 20 (99)
..|+..|+|+|.-.+
T Consensus 31 ~~~k~~GRGaYvc~~ 45 (78)
T PF04296_consen 31 PSGKLPGRGAYVCPD 45 (78)
T ss_dssp TTS---SEEEEEES-
T ss_pred CCCCCCCCeEEEcCC
Confidence 357899999999864
No 53
>smart00427 H2B Histone H2B.
Probab=28.25 E-value=1.5e+02 Score=18.92 Aligned_cols=35 Identities=17% Similarity=-0.020 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHcC---CCCCcchHHHHHHhhc
Q psy9061 51 LQLRMVSRFVNEAVLCLEET---ILNSPASPVYDHHLDG 86 (99)
Q Consensus 51 i~~Rll~~~vnEA~~~l~eG---v~~s~~diD~~~~~g~ 86 (99)
+++-++-.+..||.++...+ -+ +..+|..|+.+-+
T Consensus 31 fvnDiferIa~EAs~L~~~nkr~Tl-tsreIqtAvrl~L 68 (89)
T smart00427 31 FVNDIFERIAAEASKLARYNKKSTL-SSREIQTAVRLIL 68 (89)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcC-CHHHHHHHHHHHc
Confidence 66777778899999998765 45 6789998887754
No 54
>PRK14629 hypothetical protein; Provisional
Probab=27.79 E-value=1.2e+02 Score=19.56 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEE 69 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~e 69 (99)
++.+++..++.+-+|+|..-+++
T Consensus 63 eD~e~LeDLI~aAvNdA~~k~~e 85 (99)
T PRK14629 63 LDNEALEHMIKSAFNDAVSKVKE 85 (99)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988876
No 55
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=27.61 E-value=2.6e+02 Score=22.76 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHhhccCCcc------ccCHHHHHHHHHHHHHHHHHHHHHcCCCCC-------------cchHHHHHHhhc
Q psy9061 26 PVNDGALAILKKYSLQPQS------ALKDEDLQLRMVSRFVNEAVLCLEETILNS-------------PASPVYDHHLDG 86 (99)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~------~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s-------------~~diD~~~~~g~ 86 (99)
..|.-+..+++++...|.. .-+.-.-.|++|...++|.+..+.+-+... -.+|...+...+
T Consensus 136 Gqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~~l 215 (437)
T cd00585 136 GQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAIAL 215 (437)
T ss_pred CchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677788888887644321 112334578888888888766655432211 156777777899
Q ss_pred CCCCccc
Q psy9061 87 NLEPGHS 93 (99)
Q Consensus 87 G~p~gp~ 93 (99)
|-||--|
T Consensus 216 G~pP~~F 222 (437)
T cd00585 216 GEPPEKF 222 (437)
T ss_pred CCCCceE
Confidence 9998544
No 56
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=27.48 E-value=1.5e+02 Score=22.33 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH---hhcCCCCccccccccC
Q psy9061 49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHH---LDGNLEPGHSRHVTSH 99 (99)
Q Consensus 49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~---~g~G~p~gp~~~~~~~ 99 (99)
+++.+.+..+ .+.|+.++.-|+. ..||+.++. ..+|+. |.+|.++|
T Consensus 107 ~~l~~a~~~A-~~aai~~~kPGv~--~~dV~~ai~~vi~~~G~~--~i~~~~GH 155 (295)
T TIGR00501 107 DNLVKAAKDA-LYTAIKEIRAGVR--VGEIGKAIQEVIESYGVK--PISNLTGH 155 (295)
T ss_pred HHHHHHHHHH-HHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCe--eecCCCCc
Confidence 3444444443 3678888999965 689998884 466664 56788877
No 57
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.78 E-value=1.1e+02 Score=17.50 Aligned_cols=8 Identities=38% Similarity=0.762 Sum_probs=6.6
Q ss_pred ceeEeccC
Q psy9061 13 KGYFVYAK 20 (99)
Q Consensus 13 ~GfY~Y~~ 20 (99)
.|||+++.
T Consensus 15 ~GYfd~PR 22 (53)
T PF04967_consen 15 LGYFDVPR 22 (53)
T ss_pred cCCCCCCC
Confidence 68999975
No 58
>PHA01735 hypothetical protein
Probab=25.74 E-value=1.7e+02 Score=18.07 Aligned_cols=34 Identities=12% Similarity=-0.007 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q psy9061 49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHH 83 (99)
Q Consensus 49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~ 83 (99)
+|...-+-..+.||-.+.+.+|-+ +..|+-.|..
T Consensus 7 ee~fs~LH~~lt~El~~RiksgeA-TtaDL~AA~d 40 (76)
T PHA01735 7 EEQFDELHQLLTNELLSRIKSGEA-TTADLRAACD 40 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHH
Confidence 455556666667777777777766 4455555543
No 59
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=25.72 E-value=32 Score=25.29 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q psy9061 50 DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHH 83 (99)
Q Consensus 50 ~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~ 83 (99)
+.+..++..+=+-=...+..|++.|.+|+|+.+.
T Consensus 130 ~~i~~~I~~lRekYRealr~G~ldS~~D~dvl~L 163 (205)
T PF08745_consen 130 EVIGEIIRKLREKYREALRKGILDSREDIDVLLL 163 (205)
T ss_dssp -------------------------HHHHHHHHH
T ss_pred ccccccccccccccccccccccCCChHhHHHHHH
Confidence 4456666666666677889999999999998554
No 60
>KOG3316|consensus
Probab=25.47 E-value=1.4e+02 Score=21.15 Aligned_cols=41 Identities=15% Similarity=-0.005 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHH---HHcCCCCCcchHHHHHHhhcCCCCc
Q psy9061 51 LQLRMVSRFVNEAVLC---LEETILNSPASPVYDHHLDGNLEPG 91 (99)
Q Consensus 51 i~~Rll~~~vnEA~~~---l~eGv~~s~~diD~~~~~g~G~p~g 91 (99)
..+-|...||+.+... -++|-+..-+..|.+..-++||.-|
T Consensus 6 ~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG 49 (163)
T KOG3316|consen 6 LFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVG 49 (163)
T ss_pred HHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHH
Confidence 3455666777777776 4567676667778888889998765
No 61
>PLN00053 photosystem II subunit R; Provisional
Probab=25.13 E-value=39 Score=22.58 Aligned_cols=14 Identities=43% Similarity=0.949 Sum_probs=11.2
Q ss_pred Ccccc-CceeEeccC
Q psy9061 7 PGRKS-GKGYFVYAK 20 (99)
Q Consensus 7 lGrKt-G~GfY~Y~~ 20 (99)
-|||. |+|.|+|.+
T Consensus 45 sGRk~kGkGVYqFvd 59 (117)
T PLN00053 45 SGRKGKGKGVYQFVD 59 (117)
T ss_pred CCccCCCcceEEehh
Confidence 47776 899999975
No 62
>PRK14627 hypothetical protein; Provisional
Probab=25.12 E-value=1.4e+02 Score=19.15 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEE 69 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~e 69 (99)
++.+++.-++.+-+|+|..-.++
T Consensus 61 ed~e~LeDLI~aA~N~A~~k~~~ 83 (100)
T PRK14627 61 DDVEMLQDLLLVAINDASRKAQQ 83 (100)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999998877
No 63
>PRK00153 hypothetical protein; Validated
Probab=25.08 E-value=1.2e+02 Score=19.28 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcC
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEET 70 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eG 70 (99)
.+.+.+..++..-+|+|..-+++-
T Consensus 63 ~d~e~LedlI~~A~n~A~~~~~~~ 86 (104)
T PRK00153 63 EDVEMLEDLILAAFNDALRKAEET 86 (104)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999999988884
No 64
>PRK04358 hypothetical protein; Provisional
Probab=24.88 E-value=1.7e+02 Score=21.74 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q psy9061 49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHH 83 (99)
Q Consensus 49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~ 83 (99)
.+.+..++..+=+.=...+..|+..|.+|+|....
T Consensus 136 ~~~v~~~I~~lRekYReAlr~G~ldS~~DidvlaL 170 (217)
T PRK04358 136 REVVGKIISKLREKYREALRKGILDSAEDLDVLLL 170 (217)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCcccchhhHHHHHH
Confidence 34567777777777778899999999999998554
No 65
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=23.42 E-value=88 Score=20.09 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcC
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEET 70 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eG 70 (99)
.+.+++.-++..-+|+|..-+++-
T Consensus 64 ~d~e~LedlI~~A~N~A~~k~~~~ 87 (102)
T TIGR00103 64 EDKEALEDMITEALNDAVKKVEET 87 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999988874
No 66
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=22.75 E-value=1.8e+02 Score=21.42 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q psy9061 52 QLRMVSRFVNEAVLCLEETILNSPASPVYDHH 83 (99)
Q Consensus 52 ~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~ 83 (99)
+..++..+=+.=...+..|++.|.+|+|+...
T Consensus 135 ~~~~I~~lRekYReAlR~GiLdS~~DidvlaL 166 (206)
T TIGR03875 135 VGKIIRKLREKYREALRKGILDSAEDLDVLLL 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHccccCchhhHHHHHH
Confidence 55666666666677889999999999998543
No 67
>PRK14621 hypothetical protein; Provisional
Probab=22.30 E-value=1.6e+02 Score=19.39 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHc
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEE 69 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~e 69 (99)
+++.+++.-++.+-+|+|..-+++
T Consensus 61 ldD~e~LeDLI~aA~NdA~~ka~~ 84 (111)
T PRK14621 61 MDDVEMVQDLVVAAVNSALEESAK 84 (111)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999998887
No 68
>PLN00158 histone H2B; Provisional
Probab=22.24 E-value=2e+02 Score=19.28 Aligned_cols=35 Identities=9% Similarity=-0.085 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHcC---CCCCcchHHHHHHhhc
Q psy9061 51 LQLRMVSRFVNEAVLCLEET---ILNSPASPVYDHHLDG 86 (99)
Q Consensus 51 i~~Rll~~~vnEA~~~l~eG---v~~s~~diD~~~~~g~ 86 (99)
++|-++..+..||.++..-. -+ +..+|..++.+-+
T Consensus 57 fvnDiferIA~EAs~La~~nkr~Tl-tsrEIqtAvrLvL 94 (116)
T PLN00158 57 FINDIFEKIATEAGKLARYNKKPTV-TSREIQTAVRLIL 94 (116)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcC-CHHHHHHHHHHhc
Confidence 56777778889999998755 55 6789999887754
No 69
>PRK14623 hypothetical protein; Provisional
Probab=21.73 E-value=1.7e+02 Score=19.18 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcC
Q psy9061 46 LKDEDLQLRMVSRFVNEAVLCLEET 70 (99)
Q Consensus 46 ~~~~~i~~Rll~~~vnEA~~~l~eG 70 (99)
+++.+.+.-++.+-+|+|..-+++-
T Consensus 58 l~D~E~LeDLI~aAvn~A~~k~~~~ 82 (106)
T PRK14623 58 LEDKEQLEDYLVLTLNKAIEKATEI 82 (106)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999988874
No 70
>PRK09354 recA recombinase A; Provisional
Probab=21.42 E-value=1.3e+02 Score=23.72 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=14.1
Q ss_pred cccCceeEeccCCCCCCCCCHHHHHHHH
Q psy9061 9 RKSGKGYFVYAKGSKARPVNDGALAILK 36 (99)
Q Consensus 9 rKtG~GfY~Y~~g~~~~~~~~~~~~~~~ 36 (99)
+|+| +||.|.+.. -.+=...+..++.
T Consensus 286 ~k~g-~w~~~~~~~-~~qg~~~~~~~l~ 311 (349)
T PRK09354 286 EKSG-AWYSYNGEK-IGQGRENAKQYLK 311 (349)
T ss_pred Eccc-CEEEECCce-ecCcHHHHHHHHH
Confidence 4566 899997542 1122234555554
No 71
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=20.71 E-value=25 Score=24.41 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=7.9
Q ss_pred CCccccCceeEec
Q psy9061 6 PPGRKSGKGYFVY 18 (99)
Q Consensus 6 rlGrKtG~GfY~Y 18 (99)
|+|. |+||||.
T Consensus 132 RLG~--GgGyYDR 142 (181)
T TIGR02727 132 RLGY--GGGYYDR 142 (181)
T ss_pred cccC--CcchHHH
Confidence 4443 8899986
No 72
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=20.64 E-value=25 Score=24.62 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.2
Q ss_pred CCCccccCceeEec
Q psy9061 5 CPPGRKSGKGYFVY 18 (99)
Q Consensus 5 grlGrKtG~GfY~Y 18 (99)
.|+|. |+||||-
T Consensus 125 ~RLG~--GgGyYDR 136 (182)
T PRK10333 125 QRLGM--GGGFYDR 136 (182)
T ss_pred CcccC--CcchHHH
Confidence 34554 8899975
No 73
>PRK14622 hypothetical protein; Provisional
Probab=20.51 E-value=2e+02 Score=18.61 Aligned_cols=39 Identities=18% Similarity=0.015 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE 89 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p 89 (99)
++.+++.-++..-+|+|+.-+++-.- +.+.. +.-|+++|
T Consensus 61 ed~e~LeDLI~aA~N~A~~k~~~~~~---~~m~~-~tgg~~lP 99 (103)
T PRK14622 61 NDKAMLEDLVTAAVNAAVEKARTAAD---ESMSK-ATGGIKIP 99 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhCCCCCC
Confidence 56788999999999999999887322 33333 23355555
Done!